Pregenerated sensors for CKAP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037725Ensembl transcript IDs: ENSMUST00000046916.9
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TACAAAGCAGTTTTTCTTGTGGTGCTAAGGACTGAATTCAGAGCCTaGCACATTAGGCAAGCACTCTTCTGGGGGCACATCCTGAGACCC | + |
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Preference number: 2 (lower is better) Translates to: YKAVFLVVLRTEFRA*HIRQALFWGHILRP Trigger: GGGTCTCAGGATGTGCCCCCAGAAGAGTGCTTGCCTAATGTGCAAGGCTCTGAATTCAGTCCTTAGCACCACAAGAAAAACTGCTTTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CCA 90 bp | AGCGGCCTGCTGAGGCCCTGTTTCGCAGCTCCGTGGGAACTACTGTaGAGGCTTCGGATAGGTGGTCGCACAAGTGTGTCCTTCGACGCA | + |
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Preference number: 5 (lower is better) Translates to: SGLLRPCFAAPWELL*RLRIGGRTSVSFDA Trigger: TGCGTCGAAGGACACACTTGTGCGACCACCTATCCGAAGCCTCCACAGTAGTTCCCACGGAGCTGCGAAACAGGGCCTCAGCAGGCCGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CCA 90 bp | GTAACATTGGCAAGCGGCCTGCTGAGGCCCTGTTTCGCAGCTCCGTaGGAACTACTGTGGAGGCTTCGGATAGGTGGTCGCACAAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: VTLASGLLRPCFAAP*ELLWRLRIGGRTSV Trigger: CACACTTGTGCGACCACCTATCCGAAGCCTCCACAGTAGTTCCCACGGAGCTGCGAAACAGGGCCTCAGCAGGCCGCTTGCCAATGTTAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CCA 90 bp | CTGTTTCGCAGCTCCGTGGGAACTACTGTGGAGGCTTCGGATAGGTaGTCGCACAAGTGTGTCCTTCGACGCAGTGCTCACAGGTTTAGC | + |
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Preference number: 5 (lower is better) Translates to: LFRSSVGTTVEASDR*SHKCVLRRSAHRFS Trigger: GCTAAACCTGTGAGCACTGCGTCGAAGGACACACTTGTGCGACCACCTATCCGAAGCCTCCACAGTAGTTCCCACGGAGCTGCGAAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 90 bp | CGTCATCTGAGCTTTCCTCTCTGCGGTGGTGTCCTTGAGCTGAGCTaGTCTATGAACACTTGCTCCTGCAATCGTGTATCTGCGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: RHLSFPLCGGVLELS*SMNTCSCNRVSALV Trigger: GACCAGCGCAGATACACGATTGCAGGAGCAAGTGTTCATAGATCAGCTCAGCTCAAGGACACCACCGCAGAGAGGAAAGCTCAGATGACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 90 bp | GGGTCGTGGTCTTTTAACATGGCTGGCAGTCGTGAAGTCTTGTCTTaGATGCGCCGTGAGCGTCTCACTGGTGTCAGGAACTTTAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: GSWSFNMAGSREVLS*MRRERLTGVRNFSS Trigger: AGAGCTAAAGTTCCTGACACCAGTGAGACGCTCACGGCGCATTCAAGACAAGACTTCACGACTGCCAGCCATGTTAAAAGACCACGACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 90 bp | TTCTCCACTCCGTCATCTGAGCTTTCCTCTCTGCGGTGGTGTCCTTaGGCTGAGCTGATCTATGAACACTTGCTCCTGCAATCGTGTATC | + |
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Preference number: 5 (lower is better) Translates to: FSTPSSELSSLRWCP*AELIYEHLLLQSCI Trigger: GATACACGATTGCAGGAGCAAGTGTTCATAGATCAGCTCAGCTCAAGGACACCACCGCAGAGAGGAAAGCTCAGATGACGGAGTGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 90 bp | GCTGTAGTTGAGGCTTTTACGCTGACGGTGTTCGCAGGCTCACTCTaGGCCTTCATGGCTTTAGACACAGTAGTGGGAAGTTTCTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: AVVEAFTLTVFAGSL*AFMALDTVVGSFLV Trigger: AACCAAGAAACTTCCCACTACTGTGTCTAAAGCCATGAAGGCTCAGAGTGAGCCTGCGAACACCGTCAGCGTAAAAGCCTCAACTACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 90 bp | ATTAGACGAATCAGTCCTGGCTGCATCTTTAGATGCTATGCTTCTTaGTGGGGCCTGAGAAGAACCGGCTTTGACAACGGACACAACTGG | + |
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Preference number: 5 (lower is better) Translates to: IRRISPGCIFRCYAS*WGLRRTGFDNGHNW Trigger: CCAGTTGTGTCCGTTGTCAAAGCCGGTTCTTCTCAGGCCCCATCAAGAAGCATAGCATCTAAAGATGCAGCCAGGACTGATTCGTCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS GCA 90 bp | CCCTACATTAGCATCAGCATTTACTTCTTGGATAGGTTCCTTGGTTaGATGAGCCTCCTCAATATTTTCTCCCAAATTGACTTTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: PYISISIYFLDRFLG*MSLLNIFSQIDFFL Trigger: CAAGAAAAAGTCAATTTGGGAGAAAATATTGAGGAGGCTCATGCAACCAAGGAACCTATCCAAGAAGTAAATGCTGATGCTAATGTAGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CCA 72 bp | GTTTTCTTTGTTCTCGGAAGGCCGGCTGGTCTCGCCTaGTCGGGGGCAGCTGCAGGTCCCGGGTCACCGGCA | + |
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Preference number: 6 (lower is better) Translates to: VFFVLGRPAGLA*SGAAAGPGSPA Trigger: TGCCGGTGACCCGGGACCTGCAGCTGCCCCCGACCAGGCGAGACCAGCCGGCCTTCCGAGAACAAAGAAAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CCA 72 bp | CTGAGGCCCTGTTTCGCAGCTCCGTGGGAACTACTGTaGAGGCTTCGGATAGGTGGTCGCACAAGTGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: LRPCFAAPWELL*RLRIGGRTSVS Trigger: GGACACACTTGTGCGACCACCTATCCGAAGCCTCCACAGTAGTTCCCACGGAGCTGCGAAACAGGGCCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS GCA 72 bp | TTCCGCTACGTCGGTCTCAAAGAACAGAGGGCACAGTaGTGCATTAGGGCGGCAGACAAAGGCATCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: FRYVGLKEQRAQ*CIRAADKGIPS Trigger: GGAGGGGATGCCTTTGTCTGCCGCCCTAATGCAGCACTGTGCCCTCTGTTCTTTGAGACCGACGTAGCGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CCA 72 bp | AGCTCCGTGGGAACTACTGTGGAGGCTTCGGATAGGTaGTCGCACAAGTGTGTCCTTCGACGCAGTGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: SSVGTTVEASDR*SHKCVLRRSAH Trigger: GTGAGCACTGCGTCGAAGGACACACTTGTGCGACCACCTATCCGAAGCCTCCACAGTAGTTCCCACGGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS GCA 72 bp | CGGCAGACAAAGGCATCCCCTCCCAACTCAGACAACTaGTCCAGGGAAGACACAGAAGGGTCGTGGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: RQTKASPPNSDN*SREDTEGSWSF Trigger: AAAAGACCACGACCCTTCTGTGTCTTCCCTGGAGCAGTTGTCTGAGTTGGGAGGGGATGCCTTTGTCTGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 72 bp | GAGGCTTTTACGCTGACGGTGTTCGCAGGCTCACTCTaGGCCTTCATGGCTTTAGACACAGTAGTGGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: EAFTLTVFAGSL*AFMALDTVVGS Trigger: ACTTCCCACTACTGTGTCTAAAGCCATGAAGGCTCAGAGTGAGCCTGCGAACACCGTCAGCGTAAAAGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 72 bp | CCGTCATCTGAGCTTTCCTCTCTGCGGTGGTGTCCTTaGGCTGAGCTGATCTATGAACACTTGCTCCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: PSSELSSLRWCP*AELIYEHLLLQ Trigger: TTGCAGGAGCAAGTGTTCATAGATCAGCTCAGCTCAAGGACACCACCGCAGAGAGGAAAGCTCAGATGACGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CAA 72 bp | TTCGACGCAGTGCTCACAGGTTTAGCGTCTGCAAACTaGGTGGCAGCAGCTGTAGTTGAGGCTTTTACGCTG | + |
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Preference number: 6 (lower is better) Translates to: FDAVLTGLASAN*VAAAVVEAFTL Trigger: CAGCGTAAAAGCCTCAACTACAGCTGCTGCCACCAAGTTTGCAGACGCTAAACCTGTGAGCACTGCGTCGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 72 bp | TCTTTTAACATGGCTGGCAGTCGTGAAGTCTTGTCTTaGATGCGCCGTGAGCGTCTCACTGGTGTCAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: SFNMAGSREVLS*MRRERLTGVRN Trigger: GTTCCTGACACCAGTGAGACGCTCACGGCGCATTCAAGACAAGACTTCACGACTGCCAGCCATGTTAAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 72 bp | GCTGCATCTTTAGATGCTATGCTTCTTGATGGGGCCTaGGAAGAACCGGCTTTGACAACGGACACAACTGGT | + |
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Preference number: 6 (lower is better) Translates to: AASLDAMLLDGA*EEPALTTDTTG Trigger: ACCAGTTGTGTCCGTTGTCAAAGCCGGTTCTTCTCAGGCCCCATCAAGAAGCATAGCATCTAAAGATGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 72 bp | ATCAGTCCTGGCTGCATCTTTAGATGCTATGCTTCTTaGTGGGGCCTGAGAAGAACCGGCTTTGACAACGGA | + |
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Preference number: 6 (lower is better) Translates to: ISPGCIFRCYAS*WGLRRTGFDNG Trigger: TCCGTTGTCAAAGCCGGTTCTTCTCAGGCCCCATCAAGAAGCATAGCATCTAAAGATGCAGCCAGGACTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS TCA 72 bp | AGCTTTCCTCTCTGCGGTGGTGTCCTTGAGCTGAGCTaGTCTATGAACACTTGCTCCTGCAATCGTGTATCT | + |
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Preference number: 6 (lower is better) Translates to: SFPLCGGVLELS*SMNTCSCNRVS Trigger: AGATACACGATTGCAGGAGCAAGTGTTCATAGATCAGCTCAGCTCAAGGACACCACCGCAGAGAGGAAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS GCA 72 bp | TTAACATGGCTGGCAGTCGTGAAGTCTTGTCTTGAATaGGCCGTGAGCGTCTCACTGGTGTCAGGAACTTTA | + |
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Preference number: 6 (lower is better) Translates to: LTWLAVVKSCLE*AVSVSLVSGTL Trigger: TAAAGTTCCTGACACCAGTGAGACGCTCACGGCGCATTCAAGACAAGACTTCACGACTGCCAGCCATGTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CAA 72 bp | GCCTTCATGGCTTTAGACACAGTAGTGGGAAGTTTCTaGGTTGTTGTAAGACTCTCGCCTTTGACACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: AFMALDTVVGSF*VVVRLSPLTLG Trigger: TCCCAGTGTCAAAGGCGAGAGTCTTACAACAACCAAGAAACTTCCCACTACTGTGTCTAAAGCCATGAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS GCA 72 bp | TTTTGTTGTCTTGATCATCTTCATACACCTCAACTTTaGCATGATGTTCATTCTCCTCTCCTGGTTTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FCCLDHLHTPQL*HDVHSPLLVFL Trigger: CAGGAAAACCAGGAGAGGAGAATGAACATCATGGCAAAGTTGAGGTGTATGAAGATGATCAAGACAACAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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| CDS CAA 72 bp | CCAAGCACTCGCTTTTTAGACACATTACTGTCTTGTTaGGGCTTCTCTGCAGTCATTTGCATCTTTTTATTG | + |
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Preference number: 6 (lower is better) Translates to: PSTRFLDTLLSC*GFSAVICIFLL Trigger: CAATAAAAAGATGCAAATGACTGCAGAGAAGCCCAAACAAGACAGTAATGTGTCTAAAAAGCGAGTGCTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046916.9 |
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