Pregenerated sensors for CITED4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070803Ensembl transcript IDs: ENSMUST00000094814.6
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCTGGCAGGAGGCAGAGCCTGGAGGCAAGGCAGGTGTTCTCGGCTaGAGCCGTCTCGGCACGAAAACCAGGCGCCTCCACCCTCACGGA | + |
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Preference number: 1 (lower is better) Translates to: IWQEAEPGGKAGVLG*SRLGTKTRRLHPHG Trigger: TCCGTGAGGGTGGAGGCGCCTGGTTTTCGTGCCGAGACGGCTCCAGCCGAGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTGCCAGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR CCA 90 bp | AGACCGCTGAGGCTTGGGTATGAGAAGCGAGACCCAACTGTCATCTaGCAGGAGGCAGAGCCTGGAGGCAAGGCAGGTGTTCTCGGCTGG | + |
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Preference number: 1 (lower is better) Translates to: RPLRLGYEKRDPTVI*QEAEPGGKAGVLGW Trigger: CCAGCCGAGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTGCCAGATGACAGTTGGGTCTCGCTTCTCATACCCAAGCCTCAGCGGTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR CCA 90 bp | CTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATTaGGGCAAGGCGGCGGAAAGAGGGCACAGAATCCAAGAACGTGGA | + |
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Preference number: 1 (lower is better) Translates to: LLEKEGQAEACNGSD*GKAAERGHRIQERG Trigger: TCCACGTTCTTGGATTCTGTGCCCTCTTTCCGCCGCCTTGCCCCAATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR GCA 90 bp | GGGGTACGGAGAGATGGCTCCCTAGACCCAATCCGGTTAGTAGGCTaGTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATT | + |
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Preference number: 1 (lower is better) Translates to: GVRRDGSLDPIRLVG*SRRKVRQRPVMAQI Trigger: AATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCTACTAACCGGATTGGGTCTAGGGAGCCATCTCTCCGTACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR-3UTR CCA 90 bp | GTTAGTAGGCTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATCTCACGGAGGGTGTGTaGGAGCCGGGCCACCGGGCG | + |
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Preference number: 2 (lower is better) Translates to: VSRLLEKEGQAEACNGSDLTEGV*EPGHRA Trigger: CGCCCGGTGGCCCGGCTCCCACACACCCTCCGTGAG...ATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCTACTAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR-3UTR CCA 90 bp | GTTAGTAGGCTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATGCAGGAGGCAGAGCCTaGAGGCAAGGCAGGTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: VSRLLEKEGQAEACNGSDAGGRA*RQGRCS Trigger: AGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTGC...ATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCTACTAAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR-3UTR CCA 90 bp | GTTAGTAGGCTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATGACCCAACTGTCATCTaGCAGGAGGCAGAGCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: VSRLLEKEGQAEACNGSDDPTVI*QEAEPG Trigger: TCCAGGCTCTGCCTCCTGCCAGATGACAGTTGGGTC...ATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCTACTAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR-3UTR TCA 90 bp | GTTAGTAGGCTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATGCTGAGGCTTGGGTATaGGAAGCGAGACCCAACTGT | + |
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Preference number: 2 (lower is better) Translates to: VSRLLEKEGQAEACNGSDAEAWV*EARPNC Trigger: ACAGTTGGGTCTCGCTTCTCATACCCAAGCCTCAGC...ATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCTACTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR CCA 72 bp | GCGAGACCCAACTGTCATCTGGCAGGAGGCAGAGCCTaGAGGCAAGGCAGGTGTTCTCGGCTGGAGCCGTCT | + |
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Preference number: 3 (lower is better) Translates to: ARPNCHLAGGRA*RQGRCSRLEPS Trigger: AGACGGCTCCAGCCGAGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTGCCAGATGACAGTTGGGTCTCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| 3UTR CCA 72 bp | AAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATTaGGGCAAGGCGGCGGAAAGAGGGCACAGAATCCAA | + |
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Preference number: 3 (lower is better) Translates to: KEGQAEACNGSD*GKAAERGHRIQ Trigger: TTGGATTCTGTGCCCTCTTTCCGCCGCCTTGCCCCAATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR TCA 90 bp | GTGTGTGGGAGCCGGGCCACCGGGCGCAAGGTCCCGTGTCTCTGGGTGGTGGCTCGCCGGCTGCAGAGGTaGGGGCCCTCCAGCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VCGSRATGRKVPCLWVVARRLQR*GPSSGC Trigger: GCAGCCGCTGGAGGGCCCTCACCTCTGCAGCCGGCG...AGCCACCACCCAGAGACACGGGACCTTGCGCCCGGTGGCCCGGCTCCCACACAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR GCA 90 bp | CAGGAGGCAGAGCCTGGAGGCAAGGCAGGTGTTCTCGGCTGGAGCCGTCTCGGCTGCGGGCCGTGGGTGTaGGGCGGCACCTGTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QEAEPGGKAGVLGWSRLGCGPWV*GGTCSR Trigger: CCTGCTACAGGTGCCGCCGCACACCCACGGCCCGCA...GCCGAGACGGCTCCAGCCGAGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR GCA 90 bp | GCAGGAGGCAGAGCCTGGAGGCAAGGCAGGTGTTCTCGGCTGGAGCCGTCTCGGCCCGAAGGAGCCGTATaGCAGGGTCCCGGGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: AGGRAWRQGRCSRLEPSRPEGAV*QGPGWR Trigger: CCGCCACCCGGGACCCTGGCATACGGCTCCTTCGGG...CCGAGACGGCTCCAGCCGAGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR GCA 90 bp | GCAGGAGGCAGAGCCTGGAGGCAAGGCAGGTGTTCTCGGCTGGAGCCGTCTCGGGCTGCAGACTGCAGGTaGGTGCTACCGGCGCCCGGC | + |
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Preference number: 4 (lower is better) Translates to: AGGRAWRQGRCSRLEPSRAADCR*VLPAPG Trigger: GCCGGGCGCCGGTAGCACGCACCTGCAGTCTGCAGC...CCGAGACGGCTCCAGCCGAGAACACCTGCCTTGCCTCCAGGCTCTGCCTCCTGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR CCA 90 bp | CCCTCACGGAGGGTGTGTGGGAGCCGGGCCACCGGGCGCAAGGTCCCGTGTCTCCAATCGAACTCGCTCTaGCCGAGGAAGAGCTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: PSRRVCGSRATGRKVPCLQSNSL*PRKSSG Trigger: GCCGGAGCTCTTCCTCGGCCAGAGCGAGTTCGATTG...GAGACACGGGACCTTGCGCCCGGTGGCCCGGCTCCCACACACCCTCCGTGAGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGGCCTGTAATGGCTCAGATTGGGGCAAGGCGGCGGAAAGAGGGCACAAGAGTCCGGGGAGCGTaGGGGCCGTGGGTGTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: RQRPVMAQIGARRRKEGTRVRGA*GPWVCG Trigger: GCCGCACACCCACGGCCCGCACGCTCCCCGGACTCT...TGTGCCCTCTTTCCGCCGCCTTGCCCCAATCTGAGCCATTACAGGCCTCTGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR CCA 90 bp | AGGCTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATTGGGGCGGAGCGTGCGGGCCGTaGGTGTGCGGCGGCACCTGT | + |
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Preference number: 4 (lower is better) Translates to: RLLEKEGQAEACNGSDWGGACGP*VCGGTC Trigger: ACAGGTGCCGCCGCACACCCACGGCCCGCACGCTCC...GCCCCAATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR CCA 90 bp | AGGCAGAGGCCTGTAATGGCTCAGATTGGGGCAAGGCGGCGGAAAGAGGGCACAGCCCGGGCCTGCGTATaGCTGCAGAGTCCGGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: RQRPVMAQIGARRRKEGTARACV*LQSPGS Trigger: GCTCCCCGGACTCTGCAGCCATACGCAGGCCCGGGC...TGTGCCCTCTTTCCGCCGCCTTGCCCCAATCTGAGCCATTACAGGCCTCTGCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR GCA 90 bp | AAGGTCAGGCAGAGGCCTGTAATGGCTCAGATTGGGGCAAGGCGGCGGAAAGAGCGGGGACGGTGTGGCTaGAGACTGCAGGTGCGTGCT | + |
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Preference number: 4 (lower is better) Translates to: KVRQRPVMAQIGARRRKERGRCG*RLQVRA Trigger: AGCACGCACCTGCAGTCTGCAGCCACACCGTCCCCG...CTCTTTCCGCCGCCTTGCCCCAATCTGAGCCATTACAGGCCTCTGCCTGACCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS-3UTR CCA 90 bp | AGGCTGCTCGAGAAGGAAGGTCAGGCAGAGGCCTGTAATGGCTCAGATTGGGGCGAGACGGGGAAGGGCTaGAAAGAGACCGGCGACCCG | + |
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Preference number: 4 (lower is better) Translates to: RLLEKEGQAEACNGSDWGETGKG*KETGDP Trigger: CGGGTCGCCGGTCTCTTTCCAGCCCTTCCCCGTCTC...GCCCCAATCTGAGCCATTACAGGCCTCTGCCTGACCTTCCTTCTCGAGCAGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS CCA 90 bp | CGCCTCTTCGTCGATGAGCTCGGTGTCCATGCAGCCCAGGGCGGGTaGCGGCGGCGGCGGCGGCAACGAGGCTGCGGCTCCGGGCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: RLFVDELGVHAAQGG*RRRRRQRGCGSGRR Trigger: CCGGCGCCCGGAGCCGCAGCCTCGTTGCCGCCGCCGCCGCCGCCACCCGCCCTGGGCTGCATGGACACCGAGCTCATCGACGAAGAGGCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 90 bp | CCGGGATGCGGCCCGGGGACGGTGTGGCTGCAGACTGCAGGTGCGTaGTACCGGCGCCCGGCGACTGCGAGACGGGGAAGGGCTGGAAAG | + |
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Preference number: 5 (lower is better) Translates to: PGCGPGTVWLQTAGA*YRRPATARRGRAGK Trigger: CTTTCCAGCCCTTCCCCGTCTCGCAGTCGCCGGGCGCCGGTAGCACGCACCTGCAGTCTGCAGCCACACCGTCCCCGGGCCGCATCCCGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 90 bp | GGTGTGGCTGCAGACTGCAGGTGCGTGCTACCGGCGCCCGGCGACTaGGAGACGGGGAAGGGCTGGAAAGAGACCGGCGACCCGAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GVAADCRCVLPAPGD*ETGKGWKETGDPKE Trigger: CTCCTTCGGGTCGCCGGTCTCTTTCCAGCCCTTCCCCGTCTCGCAGTCGCCGGGCGCCGGTAGCACGCACCTGCAGTCTGCAGCCACACC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS CCA 90 bp | GCGGCCGGCGCTGACCCCAGGTCTGAGAAGCAATCGAACTCGCTCTaGCCGAGGAAGAGCTCCGGCAGCTCGCGTACGCGGTGCAACCCG | + |
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Preference number: 5 (lower is better) Translates to: AAGADPRSEKQSNSL*PRKSSGSSRTRCNP Trigger: CGGGTTGCACCGCGTACGCGAGCTGCCGGAGCTCTTCCTCGGCCAGAGCGAGTTCGATTGCTTCTCAGACCTGGGGTCAGCGCCGGCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 90 bp | AACTCGCTCTGGCCGAGGAAGAGCTCCGGCAGCTCGCGTACGCGGTaGAACCCGAGCTCGAGTTCCAGCGACGTCAGCGCCTCTTCGTCG | + |
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Preference number: 5 (lower is better) Translates to: NSLWPRKSSGSSRTR*NPSSSSSDVSASSS Trigger: CGACGAAGAGGCGCTGACGTCGCTGGAACTCGAGCTCGGGTTGCACCGCGTACGCGAGCTGCCGGAGCTCTTCCTCGGCCAGAGCGAGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 72 bp | GCCGGGATGCGGCCCGGGGACGGTGTGGCTGCAGACTaGAGGTGCGTGCTACCGGCGCCCGGCGACTGCGAG | + |
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Preference number: 6 (lower is better) Translates to: AGMRPGDGVAAD*RCVLPAPGDCE Trigger: CTCGCAGTCGCCGGGCGCCGGTAGCACGCACCTGCAGTCTGCAGCCACACCGTCCCCGGGCCGCATCCCGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 72 bp | CCCGGGCCTGCGTATGGCTGCAGAGTCCGGGGAGCGTaGGGGCCGTGGGTGTGCGGCGGCACCTGTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: PGPAYGCRVRGA*GPWVCGGTCSR Trigger: CCTGCTACAGGTGCCGCCGCACACCCACGGCCCGCACGCTCCCCGGACTCTGCAGCCATACGCAGGCCCGGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 72 bp | GGGCTGGAAAGAGACCGGCGACCCGAAGGAGCCGTATaGCAGGGTCCCGGGTGGCGGCGGCGGTCCCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: GLERDRRPEGAV*QGPGWRRRSQR Trigger: CCGCTGGGACCGCCGCCGCCACCCGGGACCCTGGCATACGGCTCCTTCGGGTCGCCGGTCTCTTTCCAGCCC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 72 bp | CGCAGACCGCTGTCCATGCCCGGGCCTGCGTATGGCTaGAGAGTCCGGGGAGCGTGCGGGCCGTGGGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RRPLSMPGPAYG*RVRGACGPWVC Trigger: GCACACCCACGGCCCGCACGCTCCCCGGACTCTGCAGCCATACGCAGGCCCGGGCATGGACAGCGGTCTGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 72 bp | GCAGACTGCAGGTGCGTGCTACCGGCGCCCGGCGACTaGGAGACGGGGAAGGGCTGGAAAGAGACCGGCGAC | + |
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Preference number: 6 (lower is better) Translates to: ADCRCVLPAPGD*ETGKGWKETGD Trigger: GTCGCCGGTCTCTTTCCAGCCCTTCCCCGTCTCGCAGTCGCCGGGCGCCGGTAGCACGCACCTGCAGTCTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS GCA 72 bp | TGGCCGAGGAAGAGCTCCGGCAGCTCGCGTACGCGGTaGAACCCGAGCTCGAGTTCCAGCGACGTCAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: WPRKSSGSSRTR*NPSSSSSDVSA Trigger: GGCGCTGACGTCGCTGGAACTCGAGCTCGGGTTGCACCGCGTACGCGAGCTGCCGGAGCTCTTCCTCGGCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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| CDS CCA 72 bp | GCTGACCCCAGGTCTGAGAAGCAATCGAACTCGCTCTaGCCGAGGAAGAGCTCCGGCAGCTCGCGTACGCGG | + |
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Preference number: 6 (lower is better) Translates to: ADPRSEKQSNSL*PRKSSGSSRTR Trigger: CCGCGTACGCGAGCTGCCGGAGCTCTTCCTCGGCCAGAGCGAGTTCGATTGCTTCTCAGACCTGGGGTCAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094814.6 |
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