Pregenerated sensors for CITED1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051159

Ensembl transcript IDs: ENSMUST00000050551.10, ENSMUST00000101336.10, ENSMUST00000130589.2, ENSMUST00000134887.8, ENSMUST00000136277.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CGATCCAGAGGAGCTAGTGGGAACTCCGTTGGCTTTGGCTCCATTTaGGGTGACCCCGGGGTAGTGCAGGACAGTCACTGCCTTGCGATC	+
Preference number: 5 (lower is better) Translates to: RSRGASGNSVGFGSI*GDPGVVQDSHCLAI Trigger: GATCGCAAGGCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAATGGAGCCAAAGCCAACGGAGTTCCCACTAGCTCCTCTGGATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8
CDS GCA 90 bp	TTTGGCTCCATTTGCGGTGACCCCGGGGTAGTGCAGGACAGTCACTaGCTTGCGATCCTTCACTCCAAGGTTGGAGTAGGCCAGAGAGTT	+
Preference number: 5 (lower is better) Translates to: FGSICGDPGVVQDSH*LAILHSKVGVGQRV Trigger: AACTCTCTGGCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAATGGAGCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 ENSMUST00000136277.2
CDS GCA 90 bp	GTTGGCATCCTCCTTCCCAGAGGTGGTGCCACCCTTGACATCAAGTaGAGGCCTCGACATAGTTGGCATTTCAGAGCCTGGGCAGAAGTC	+
Preference number: 5 (lower is better) Translates to: VGILLPRGGATLDIK*RPRHSWHFRAWAEV Trigger: GACTTCTGCCCAGGCTCTGAAATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2
CDS CCA 90 bp	GGTAGTGCAGGACAGTCACTGCCTTGCGATCCTTCACTCCAAGGTTaGAGTAGGCCAGAGAGTTCATCTCCTGGTTGGCATCCTCCTTCC	+
Preference number: 5 (lower is better) Translates to: GSAGQSLPCDPSLQG*SRPESSSPGWHPPS Trigger: GGAAGGAGGATGCCAACCAGGAGATGAACTCTCTGGCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTACC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 ENSMUST00000136277.2
CDS GCA 72 bp	GGAGCTAGTGGGAACTCCGTTGGCTTTGGCTCCATTTaGGGTGACCCCGGGGTAGTGCAGGACAGTCACTGC	+
Preference number: 6 (lower is better) Translates to: GASGNSVGFGSI*GDPGVVQDSHC Trigger: GCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAATGGAGCCAAAGCCAACGGAGTTCCCACTAGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8
CDS GCA 72 bp	ATTTGCGGTGACCCCGGGGTAGTGCAGGACAGTCACTaGCTTGCGATCCTTCACTCCAAGGTTGGAGTAGGC	+
Preference number: 6 (lower is better) Translates to: ICGDPGVVQDSH*LAILHSKVGVG Trigger: GCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 ENSMUST00000136277.2
CDS CAA 90 bp	TTGGCATTTCAGAGCCTGGGCAGAAGTCCGATAAATCGGTGGCAGTaGATGCCGCCAGCTGGGCCTGTTGGTCGGTATACTCCACCTCCA	+
Preference number: 6 (lower is better) Translates to: LAFQSLGRSPINRWQ*MPPAGPVGRYTPPP Trigger: TGGAGGTGGAGTATACCGACCAACAGGCCCAGCTGGCGGCATCAACTGCCACCGATTTATCGGACTTCTGCCCAGGCTCTGAAATGCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2
CDS CAA 72 bp	TGGTTGGCATCCTCCTTCCCAGAGGTGGTGCCACCCTaGACATCAAGTGCAGGCCTCGACATAGTTGGCATT	+
Preference number: 6 (lower is better) Translates to: WLASSFPEVVPP*TSSAGLDIVGI Trigger: AATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2
CDS CAA 90 bp	TTCATCTCCTGGTTGGCATCCTCCTTCCCAGAGGTGGTGCCACCCTaGACATCAAGTGCAGGCCTCGACATAGTTGGCATTTCAGAGCCT	+
Preference number: 6 (lower is better) Translates to: FISWLASSFPEVVPP*TSSAGLDIVGISEP Trigger: AGGCTCTGAAATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAACCAGGAGATGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2

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