Pregenerated sensors for CITED1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051159Ensembl transcript IDs: ENSMUST00000050551.10, ENSMUST00000101336.10, ENSMUST00000130589.2, ENSMUST00000134887.8, ENSMUST00000136277.2
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | CGATCCAGAGGAGCTAGTGGGAACTCCGTTGGCTTTGGCTCCATTTaGGGTGACCCCGGGGTAGTGCAGGACAGTCACTGCCTTGCGATC | + |
Preference number: 5 (lower is better) Translates to: RSRGASGNSVGFGSI*GDPGVVQDSHCLAI Trigger: GATCGCAAGGCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAATGGAGCCAAAGCCAACGGAGTTCCCACTAGCTCCTCTGGATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 |
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CDS GCA 90 bp | TTTGGCTCCATTTGCGGTGACCCCGGGGTAGTGCAGGACAGTCACTaGCTTGCGATCCTTCACTCCAAGGTTGGAGTAGGCCAGAGAGTT | + |
Preference number: 5 (lower is better) Translates to: FGSICGDPGVVQDSH*LAILHSKVGVGQRV Trigger: AACTCTCTGGCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAATGGAGCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 ENSMUST00000136277.2 |
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CDS GCA 90 bp | GTTGGCATCCTCCTTCCCAGAGGTGGTGCCACCCTTGACATCAAGTaGAGGCCTCGACATAGTTGGCATTTCAGAGCCTGGGCAGAAGTC | + |
Preference number: 5 (lower is better) Translates to: VGILLPRGGATLDIK*RPRHSWHFRAWAEV Trigger: GACTTCTGCCCAGGCTCTGAAATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2 |
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CDS CCA 90 bp | GGTAGTGCAGGACAGTCACTGCCTTGCGATCCTTCACTCCAAGGTTaGAGTAGGCCAGAGAGTTCATCTCCTGGTTGGCATCCTCCTTCC | + |
Preference number: 5 (lower is better) Translates to: GSAGQSLPCDPSLQG*SRPESSSPGWHPPS Trigger: GGAAGGAGGATGCCAACCAGGAGATGAACTCTCTGGCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTACC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 ENSMUST00000136277.2 |
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CDS GCA 72 bp | GGAGCTAGTGGGAACTCCGTTGGCTTTGGCTCCATTTaGGGTGACCCCGGGGTAGTGCAGGACAGTCACTGC | + |
Preference number: 6 (lower is better) Translates to: GASGNSVGFGSI*GDPGVVQDSHC Trigger: GCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAATGGAGCCAAAGCCAACGGAGTTCCCACTAGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 |
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CDS GCA 72 bp | ATTTGCGGTGACCCCGGGGTAGTGCAGGACAGTCACTaGCTTGCGATCCTTCACTCCAAGGTTGGAGTAGGC | + |
Preference number: 6 (lower is better) Translates to: ICGDPGVVQDSH*LAILHSKVGVG Trigger: GCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTACCCCGGGGTCACCGCAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050551.10 ENSMUST00000101336.10 ENSMUST00000130589.2 ENSMUST00000134887.8 ENSMUST00000136277.2 |
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CDS CAA 90 bp | TTGGCATTTCAGAGCCTGGGCAGAAGTCCGATAAATCGGTGGCAGTaGATGCCGCCAGCTGGGCCTGTTGGTCGGTATACTCCACCTCCA | + |
Preference number: 6 (lower is better) Translates to: LAFQSLGRSPINRWQ*MPPAGPVGRYTPPP Trigger: TGGAGGTGGAGTATACCGACCAACAGGCCCAGCTGGCGGCATCAACTGCCACCGATTTATCGGACTTCTGCCCAGGCTCTGAAATGCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2 |
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CDS CAA 72 bp | TGGTTGGCATCCTCCTTCCCAGAGGTGGTGCCACCCTaGACATCAAGTGCAGGCCTCGACATAGTTGGCATT | + |
Preference number: 6 (lower is better) Translates to: WLASSFPEVVPP*TSSAGLDIVGI Trigger: AATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2 |
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CDS CAA 90 bp | TTCATCTCCTGGTTGGCATCCTCCTTCCCAGAGGTGGTGCCACCCTaGACATCAAGTGCAGGCCTCGACATAGTTGGCATTTCAGAGCCT | + |
Preference number: 6 (lower is better) Translates to: FISWLASSFPEVVPP*TSSAGLDIVGISEP Trigger: AGGCTCTGAAATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAACCAGGAGATGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130589.2 |