Pregenerated sensors for CISD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037710

Ensembl transcript IDs: ENSMUST00000045887.9

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	ACCAGCTCAACCAGGAGGAGTGAGGGTCACGGCAGGGTTCTCCCATaGTGTAAGAAATCAACGCAATTTCATCACACCCCGTTACTTTCC	+
Preference number: 1 (lower is better) Translates to: TSSTRRSEGHGRVLP*CKKSTQFHHTPLLS Trigger: GGAAAGTAACGGGGTGTGATGAAATTGCGTTGATTTCTTACACCATGGGAGAACCCTGCCGTGACCCTCACTCCTCCTGGTTGAGCTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045887.9
3UTR GCA 72 bp	AGCAAGGCCGATGCCATGGATATGAGAGCTGTGATTTaGAGGGACCAACCACATCTAGAACCGGGGAGGCCA	+
Preference number: 3 (lower is better) Translates to: SKADAMDMRAVI*RDQPHLEPGRP Trigger: TGGCCTCCCCGGTTCTAGATGTGGTTGGTCCCTGCAAATCACAGCTCTCATATCCATGGCATCGGCCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045887.9
3UTR CCA 72 bp	ACCAGGAGGAGTGAGGGTCACGGCAGGGTTCTCCCATaGTGTAAGAAATCAACGCAATTTCATCACACCCCG	+
Preference number: 3 (lower is better) Translates to: TRRSEGHGRVLP*CKKSTQFHHTP Trigger: CGGGGTGTGATGAAATTGCGTTGATTTCTTACACCATGGGAGAACCCTGCCGTGACCCTCACTCCTCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045887.9
CDS TCA 72 bp	CCAGGTAACCGAGAGCGGCTGTGCCAGCAGCAAAGGTaGCGGCCGCGATCCACTCAACTCGCACAGCGGAGT	+
Preference number: 6 (lower is better) Translates to: PGNRERLCQQQR*RPRSTQLAQRS Trigger: ACTCCGCTGTGCGAGTTGAGTGGATCGCGGCCGTCACCTTTGCTGCTGGCACAGCCGCTCTCGGTTACCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045887.9

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu