Pregenerated sensors for CIRBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045193Ensembl transcript IDs: ENSMUST00000054666.7, ENSMUST00000105365.9, ENSMUST00000154726.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCCGGACTGCTATGCTCCCCATGGGCTTGAGACATGTGCCCGATaGGCAGGACCTGCTGCAACTCCGCAGCCGGGCTGGGGAGCTGGA | + |
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Preference number: 1 (lower is better) Translates to: LPDCYAPHGLETCAR*AGPAATPQPGWGAG Trigger: TCCAGCTCCCCAGCCCGGCTGCGGAGTTGCAGCAGGTCCTGCCCATCGGGCACATGTCTCAAGCCCATGGGGAGCATAGCAGTCCGGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 90 bp | CCGATGGGCAGGACCTGCTGCAACTCCGCAGCCGGGCTGGGGAGCTaGAGGGCCATGGCTTGCTCAAATCGAGTCCATTCCATCTCAGGA | + |
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Preference number: 1 (lower is better) Translates to: PMGRTCCNSAAGLGS*RAMACSNRVHSISG Trigger: TCCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCCGGCTGCGGAGTTGCAGCAGGTCCTGCCCATCGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 90 bp | CAGAAGCAGGCTGCTGACGGGTCAGAACGGAAAGGACTACAAAAGTaGGAACAAGGTGCTCACTACACAACGATCAGCGAAGCTCCCCCA | + |
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Preference number: 1 (lower is better) Translates to: QKQAADGSERKGLQK*EQGAHYTTISEAPP Trigger: TGGGGGAGCTTCGCTGATCGTTGTGTAGTGAGCACCTTGTTCCCACTTTTGTAGTCCTTTCCGTTCTGACCCGTCAGCAGCCTGCTTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 90 bp | ACAGACAGCGCTTCCTTAAAAACAGGTCTAGTCACGAGGCCATCTTaGGTCAGAAGCAGGCTGCTGACGGGTCAGAACGGAAAGGACTAC | + |
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Preference number: 1 (lower is better) Translates to: TDSASLKTGLVTRPS*VRSRLLTGQNGKDY Trigger: GTAGTCCTTTCCGTTCTGACCCGTCAGCAGCCTGCTTCTGACCCAAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGCGCTGTCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGGGGAGCTGGAGGGCCATGGCTTGCTCAAATCGAGTCCATTCCATCTCAGGGTCACGAGGCCATCTTaGGTCAGAAGCAGGCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: AGELEGHGLLKSSPFHLRVTRPS*VRSRLL Trigger: CAGCAGCCTGCTTCTGACCCAAGATGGCCTCGTGAC...CCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR-3UTR CCA 90 bp | TCTGTCCCAGCGACCACGCCAGCCCAGCTTCTTTATCTTTTCCACAGAAGCCTGTGGCTCCAGATCCTGTaGAACCCTCTAGGACCCAGA | + |
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Preference number: 2 (lower is better) Translates to: SVPATTPAQLLYLFHRSLWLQIL*NPLGPR Trigger: TCTGGGTCCTAGAGGGTTCCACAGGATCTGGAGCCA...CAGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| 3UTR-3UTR CCA 90 bp | CCGCCCCCACAACATTCTGTCCCAGCGACCACGCCAGCCCAGCTTCTTTATCTTACTGTGTGCAGTCTATaGCTCCAGATCCTGTGGAAC | + |
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Preference number: 2 (lower is better) Translates to: PPPQHSVPATTPAQLLYLTVCSL*LQILWN Trigger: GTTCCACAGGATCTGGAGCCATAGACTGCACACAGT...AAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGAATGTTGTGGGGGCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| 3UTR CAA 90 bp | AACAGACAGCGCTTCCTTAAAAACAGGTCTAGTCACGAGGCCATCTaGGGTCAGAAGCAGGCTGCTGACGGGTCAGAACGGAAAGGACTA | + |
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Preference number: 2 (lower is better) Translates to: NRQRFLKNRSSHEAI*GQKQAADGSERKGL Trigger: TAGTCCTTTCCGTTCTGACCCGTCAGCAGCCTGCTTCTGACCCAAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGCGCTGTCTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR-3UTR GCA 90 bp | ATTTCACACGGTCTTTTAATCGGCTTCGTGAAGCCAAAGAAACTGCGTACAAGAATGGGCAGGACCTGCTaGAACTCCGCAGCCGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: ISHGLLIGFVKPKKLRTRMGRTC*NSAAGL Trigger: CAGCCCGGCTGCGGAGTTGCAGCAGGTCCTGCCCAT...TCTTGTACGCAGTTTCTTTGGCTTCACGAAGCCGATTAAAAGACCGTGTGAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR-3UTR CCA 90 bp | ATTTCACACGGTCTTTTAATCGGCTTCGTGAAGCCAAAGAAACTGCGTACAAGAAAAGGACTACAAAAGTaGGAACAAGGTGCTCACTAC | + |
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Preference number: 2 (lower is better) Translates to: ISHGLLIGFVKPKKLRTRKGLQK*EQGAHY Trigger: GTAGTGAGCACCTTGTTCCCACTTTTGTAGTCCTTT...TCTTGTACGCAGTTTCTTTGGCTTCACGAAGCCGATTAAAAGACCGTGTGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 72 bp | TGCTATGCTCCCCATGGGCTTGAGACATGTGCCCGATaGGCAGGACCTGCTGCAACTCCGCAGCCGGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: CYAPHGLETCAR*AGPAATPQPGW Trigger: CCAGCCCGGCTGCGGAGTTGCAGCAGGTCCTGCCCATCGGGCACATGTCTCAAGCCCATGGGGAGCATAGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR GCA 72 bp | TCCGCAGCCGGGCTGGGGAGCTGGAGGGCCATGGCTTaGTCAAATCGAGTCCATTCCATCTCAGGAGGGGTG | + |
|
Preference number: 3 (lower is better) Translates to: SAAGLGSWRAMA*SNRVHSISGGV Trigger: CACCCCTCCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCCGGCTGCGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 72 bp | AGGACCTGCTGCAACTCCGCAGCCGGGCTGGGGAGCTaGAGGGCCATGGCTTGCTCAAATCGAGTCCATTCC | + |
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Preference number: 3 (lower is better) Translates to: RTCCNSAAGLGS*RAMACSNRVHS Trigger: GGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCCGGCTGCGGAGTTGCAGCAGGTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 72 bp | GCAACTCCGCAGCCGGGCTGGGGAGCTGGAGGGCCATaGCTTGCTCAAATCGAGTCCATTCCATCTCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: ATPQPGWGAGGP*LAQIESIPSQE Trigger: CTCCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCCGGCTGCGGAGTTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 72 bp | GGGCAAACTGTGTGCAGTCTATGGCTCCAGATCCTGTaGAACCCTCTAGGACCCAGAGTCAGCCATCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: GQTVCSLWLQIL*NPLGPRVSHPP Trigger: GGGAGGATGGCTGACTCTGGGTCCTAGAGGGTTCCACAGGATCTGGAGCCATAGACTGCACACAGTTTGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| 3UTR GCA 72 bp | CGCCAGCCCAGCTTCTTTATCTTTTCCACAGAAGCCTaGATCGCCCACGAGCCAGGTGCTAGCTCAGGAATT | + |
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Preference number: 3 (lower is better) Translates to: RQPSFFIFSTEA*IAHEPGASSGI Trigger: AATTCCTGAGCTAGCACCTGGCTCGTGGGCGATGCAGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| 3UTR CCA 72 bp | GCTTCCTTAAAAACAGGTCTAGTCACGAGGCCATCTTaGGTCAGAAGCAGGCTGCTGACGGGTCAGAACGGA | + |
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Preference number: 3 (lower is better) Translates to: ASLKTGLVTRPS*VRSRLLTGQNG Trigger: TCCGTTCTGACCCGTCAGCAGCCTGCTTCTGACCCAAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR GCA 72 bp | GTCAGAACGGAAAGGACTACAAAAGTGGGAACAAGGTaGTCACTACACAACGATCAGCGAAGCTCCCCCATC | + |
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Preference number: 3 (lower is better) Translates to: VRTERTTKVGTR*SLHNDQRSSPI Trigger: GATGGGGGAGCTTCGCTGATCGTTGTGTAGTGAGCACCTTGTTCCCACTTTTGTAGTCCTTTCCGTTCTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CCA 72 bp | GCTGCTGACGGGTCAGAACGGAAAGGACTACAAAAGTaGGAACAAGGTGCTCACTACACAACGATCAGCGAA | + |
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Preference number: 3 (lower is better) Translates to: AADGSERKGLQK*EQGAHYTTISE Trigger: TTCGCTGATCGTTGTGTAGTGAGCACCTTGTTCCCACTTTTGTAGTCCTTTCCGTTCTGACCCGTCAGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR GCA 72 bp | GACAATATAAATAAACATTTCCACAGCCTCCCGGACTaGTATGCTCCCCATGGGCTTGAGACATGTGCCCGA | + |
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Preference number: 3 (lower is better) Translates to: DNINKHFHSLPD*YAPHGLETCAR Trigger: TCGGGCACATGTCTCAAGCCCATGGGGAGCATAGCAGTCCGGGAGGCTGTGGAAATGTTTATTTATATTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR TCA 72 bp | CCAAAGAAACTGCGTACAAGAATTCCTCAGCCACTGTaGATACAACATCGATGGAGTATGCATGTCTTCGGT | + |
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Preference number: 3 (lower is better) Translates to: PKKLRTRIPQPL*IQHRWSMHVFG Trigger: ACCGAAGACATGCATACTCCATCGATGTTGTATTCACAGTGGCTGAGGAATTCTTGTACGCAGTTTCTTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| 3UTR CAA 72 bp | CTCCGCAGCCGGGCTGGGGAGCTGGAGGGCCATGGCTaGCTCAAATCGAGTCCATTCCATCTCAGGAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LRSRAGELEGHG*LKSSPFHLRRG Trigger: ACCCCTCCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCCGGCTGCGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR GCA 90 bp | GAACCCTCTAGGACCCAGAGTCAGCCATCCTCCCATGGCTCAGGTTGGCTCCCCACCTGCTCCAGCGCCTaGTCGTTGGTGTCGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: EPSRTQSQPSSHGSGWLPTCSSA*SLVSKL Trigger: CAGCTTCGACACCAACGAGCAGGCGCTGGAGCAGGT...GGGGAGCCAACCTGAGCCATGGGAGGATGGCTGACTCTGGGTCCTAGAGGGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| 3UTR CAA 72 bp | CCTGCATCGCCCACGAGCCAGGTGCTAGCTCAGGAATaGCCGGGCAAACTGTGTGCAGTCTATGGCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: PASPTSQVLAQE*PGKLCAVYGSR Trigger: TCTGGAGCCATAGACTGCACACAGTTTGCCCGGCAATTCCTGAGCTAGCACCTGGCTCGTGGGCGATGCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR GCA 90 bp | TTTCCACAGAAGCCTGCATCGCCCACGAGCCAGGTGCTAGCTCAGGAATTGCCGTACTTGGAGAAGACCTaGTCCAGCGCCTGCTCGTTG | + |
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Preference number: 4 (lower is better) Translates to: FPQKPASPTSQVLAQELPYLEKT*SSACSL Trigger: CAACGAGCAGGCGCTGGAGCAGGTCTTCTCCAAGTA...CGGCAATTCCTGAGCTAGCACCTGGCTCGTGGGCGATGCAGGCTTCTGTGGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR GCA 90 bp | AAACATTTCCACAGCCTCCCGGACTGCTATGCTCCCCATGGGCTTGAGACATGTACCTGCTCCAGCGCCTaGTCGTTGGTGTCGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KHFHSLPDCYAPHGLETCTCSSA*SLVSKL Trigger: CAGCTTCGACACCAACGAGCAGGCGCTGGAGCAGGT...ACATGTCTCAAGCCCATGGGGAGCATAGCAGTCCGGGAGGCTGTGGAAATGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR CCA 90 bp | CCGCCCCCACAACATTCTGTCCCAGCGACCACGCCAGCCCAGCTTCTTTATCTTAGATCTGCCCATACTTaGAGAAGACCTGCTCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: PPPQHSVPATTPAQLLYLRSAHT*RRPAPA Trigger: CGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCT...AAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGAATGTTGTGGGGGCGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR CCA 90 bp | ATGGCTTGCTCAAATCGAGTCCATTCCATCTCAGGAGGGGTGGGGCGCCAGACTAGATCTGCCCATACTTaGAGAAGACCTGCTCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: MACSNRVHSISGGVGRQTRSAHT*RRPAPA Trigger: CGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCT...AGTCTGGCGCCCCACCCCTCCTGAGATGGAATGGACTCGATTTGAGCAAGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR CCA 90 bp | CACGCCAGCCCAGCTTCTTTATCTTTTCCACAGAAGCCTGCATCGCCCACGAGCTGGCATAGTAGTCTCTaGAGCCTCCATAACCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: HASPASLSFPQKPASPTSWHSSL*SLHNPH Trigger: GTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCA...GCTCGTGGGCGATGCAGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR CCA 90 bp | TTCTGTCCCAGCGACCACGCCAGCCCAGCTTCTTTATCTTTTCCACAGAAGCCTCACCCTGACTCCGGCTaGCATAGTAGTCTCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: FCPSDHASPASLSFPQKPHPDSG*HSSLWS Trigger: GCTCCAGAGACTACTATGCCAGCCGGAGTCAGGGTG...AGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| 3UTR CAA 72 bp | CGCTTCCTTAAAAACAGGTCTAGTCACGAGGCCATCTaGGGTCAGAAGCAGGCTGCTGACGGGTCAGAACGG | + |
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Preference number: 4 (lower is better) Translates to: RFLKNRSSHEAI*GQKQAADGSER Trigger: CCGTTCTGACCCGTCAGCAGCCTGCTTCTGACCCAAGATGGCCTCGTGACTAGACCTGTTTTTAAGGAAGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR TCA 90 bp | CCGCCCCCACAACATTCTGTCCCAGCGACCACGCCAGCCCAGCTTCTTTATCTTCGATATTTTCAAAGGTaGCAAACCCAAAGCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: PPPQHSVPATTPAQLLYLRYFQR*QTQSLG Trigger: CCCGAGGCTTTGGGTTTGTCACCTTTGAAAATATCG...AAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGAATGTTGTGGGGGCGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR TCA 90 bp | GGGCTGGGGAGCTGGAGGGCCATGGCTTGCTCAAATCGAGTCCATTCCATCTCACGATATTTTCAAAGGTaGCAAACCCAAAGCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: GLGSWRAMACSNRVHSISRYFQR*QTQSLG Trigger: CCCGAGGCTTTGGGTTTGTCACCTTTGAAAATATCG...TGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR GCA 90 bp | AACTGCGTACAAGAATTCCTCAGCCACTGTGAATACAACATCGATGGAGTATGCTACTTGGAGAAGACCTaGTCCAGCGCCTGCTCGTTG | + |
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Preference number: 4 (lower is better) Translates to: NCVQEFLSHCEYNIDGVCYLEKT*SSACSL Trigger: CAACGAGCAGGCGCTGGAGCAGGTCTTCTCCAAGTA...GCATACTCCATCGATGTTGTATTCACAGTGGCTGAGGAATTCTTGTACGCAGTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR CCA 90 bp | CAAAGAAACTGCGTACAAGAATTCCTCAGCCACTGTGAATACAACATCGATGGATGGCATAGTAGTCTCTaGAGCCTCCATAACCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: QRNCVQEFLSHCEYNIDGWHSSL*SLHNPH Trigger: GTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCA...TCCATCGATGTTGTATTCACAGTGGCTGAGGAATTCTTGTACGCAGTTTCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS CCA 90 bp | GATAACCATAGCTGCCACCCTGACTCCGGCTGGCATAGTAGTCTCTaGAGCCTCCATAACCCCCACTCCGGGACTCAAAGCGGCCACCTC | + |
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Preference number: 5 (lower is better) Translates to: DNHSCHPDSGWHSSL*SLHNPHSGTQSGHL Trigger: GAGGTGGCCGCTTTGAGTCCCGGAGTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCAGCCGGAGTCAGGGTGGCAGCTATGGTTATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 |
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| CDS-3UTR CAA 90 bp | GCTGGGGAGCTGGAGGGCCATGGCTTGCTCAAATCGAGTCCATTCCATCTCAGGTCCAGCGCCTGCTCGTaGGTGTCGAAGCTGAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: AGELEGHGLLKSSPFHLRSSACS*VSKLSP Trigger: AGGACTCAGCTTCGACACCAACGAGCAGGCGCTGGA...CCTGAGATGGAATGGACTCGATTTGAGCAAGCCATGGCCCTCCAGCTCCCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS-3UTR CAA 90 bp | CTCCCGGACTGCTATGCTCCCCATGGGCTTGAGACATGTGCCCGATGGGCAGGAGAGATCTGCCCATACTaGGAGAAGACCTGCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LPDCYAPHGLETCARWAGEICPY*EKTCSS Trigger: GCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTC...TCCTGCCCATCGGGCACATGTCTCAAGCCCATGGGGAGCATAGCAGTCCGGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105365.9 |
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| CDS GCA 90 bp | CGGGACCGGTTGTCAGAAGACTTGCCAGCCTGGTCAACTCTGATCTaGCGCCCGTCCACAGACTTCCCATTCATAGCCATCATGGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: RDRLSEDLPAWSTLI*RPSTDFPFIAIMAS Trigger: GGACGCCATGATGGCTATGAATGGGAAGTCTGTGGACGGGCGGCAGATCAGAGTTGACCAGGCTGGCAAGTCTTCTGACAACCGGTCCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS GCA 90 bp | CATAGCTGTCTCTGTAGGACCCTCCCGAGCTCCGATAACCATAGCTaGCACCCTGACTCCGGCTGGCATAGTAGTCTCTGGAGCCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: HSCLCRTLPSSDNHS*HPDSGWHSSLWSLH Trigger: ATGGAGGCTCCAGAGACTACTATGCCAGCCGGAGTCAGGGTGGCAGCTATGGTTATCGGAGCTCGGGAGGGTCCTACAGAGACAGCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 |
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| CDS-3UTR CAA 90 bp | AGCCCAGCTTCTTTATCTTTTCCACAGAAGCCTGCATCGCCCACGAGCCAGGTGTCCAGCGCCTGCTCGTaGGTGTCGAAGCTGAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: SPASLSFPQKPASPTSQVSSACS*VSKLSP Trigger: AGGACTCAGCTTCGACACCAACGAGCAGGCGCTGGA...CACCTGGCTCGTGGGCGATGCAGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR CAA 90 bp | GCGACCACGCCAGCCCAGCTTCTTTATCTTTTCCACAGAAGCCTGCATCGCCCAGAGATCTGCCCATACTaGGAGAAGACCTGCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: ATTPAQLLYLFHRSLHRPEICPY*EKTCSS Trigger: GCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTC...TGGGCGATGCAGGCTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCGTGGTCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS-3UTR CAA 90 bp | ACATTCTGTCCCAGCGACCACGCCAGCCCAGCTTCTTTATCTTTTCCACAGAAGCGGTTGTCAGAAGACTaGCCAGCCTGGTCAACTCTG | + |
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Preference number: 5 (lower is better) Translates to: TFCPSDHASPASLSFPQKRLSED*PAWSTL Trigger: CAGAGTTGACCAGGCTGGCAAGTCTTCTGACAACCG...CTTCTGTGGAAAAGATAAAGAAGCTGGGCTGGCGTGGTCGCTGGGACAGAATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054666.7 |
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| CDS CAA 90 bp | AAGCCCCGGCCTCCAGCAGAGCCACCCCGGTATCCTCGGGACCGGTaGTCAGAAGACTTGCCAGCCTGGTCAACTCTGATCTGCCGCCCG | + |
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Preference number: 6 (lower is better) Translates to: KPRPPAEPPRYPRDR*SEDLPAWSTLICRP Trigger: CGGGCGGCAGATCAGAGTTGACCAGGCTGGCAAGTCTTCTGACAACCGGTCCCGAGGATACCGGGGTGGCTCTGCTGGAGGCCGGGGCTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS CAA 90 bp | CCAGCAGAGCCACCCCGGTATCCTCGGGACCGGTTGTCAGAAGACTaGCCAGCCTGGTCAACTCTGATCTGCCGCCCGTCCACAGACTTC | + |
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Preference number: 6 (lower is better) Translates to: PAEPPRYPRDRLSED*PAWSTLICRPSTDF Trigger: GAAGTCTGTGGACGGGCGGCAGATCAGAGTTGACCAGGCTGGCAAGTCTTCTGACAACCGGTCCCGAGGATACCGGGGTGGCTCTGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS CCA 72 bp | AGCTGCCACCCTGACTCCGGCTGGCATAGTAGTCTCTaGAGCCTCCATAACCCCCACTCCGGGACTCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SCHPDSGWHSSL*SLHNPHSGTQS Trigger: GCTTTGAGTCCCGGAGTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCAGCCGGAGTCAGGGTGGCAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 |
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| CDS CAA 72 bp | CCTCCAGCAGAGCCACCCCGGTATCCTCGGGACCGGTaGTCAGAAGACTTGCCAGCCTGGTCAACTCTGATC | + |
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Preference number: 6 (lower is better) Translates to: PPAEPPRYPRDR*SEDLPAWSTLI Trigger: GATCAGAGTTGACCAGGCTGGCAAGTCTTCTGACAACCGGTCCCGAGGATACCGGGGTGGCTCTGCTGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS CAA 90 bp | GTCTCCCTGTCCTTTACCACCACCACTTCGGAGATCTGCCCATACTaGGAGAAGACCTGCTCCAGCGCCTGCTCGTTGGTGTCGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: VSLSFTTTTSEICPY*EKTCSSACSLVSKL Trigger: CAGCTTCGACACCAACGAGCAGGCGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTCCGAAGTGGTGGTGGTAAAGGACAGGGAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS GCA 72 bp | GTCTCCCTGTCCTTTACCACCACCACTTCGGAGATCTaGCCATACTTGGAGAAGACCTGCTCCAGCGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: VSLSFTTTTSEI*PYLEKTCSSAC Trigger: GCAGGCGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTCCGAAGTGGTGGTGGTAAAGGACAGGGAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS CCA 72 bp | AGCTCCGATAACCATAGCTGCCACCCTGACTCCGGCTaGCATAGTAGTCTCTGGAGCCTCCATAACCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: SSDNHSCHPDSG*HSSLWSLHNPH Trigger: GTGGGGGTTATGGAGGCTCCAGAGACTACTATGCCAGCCGGAGTCAGGGTGGCAGCTATGGTTATCGGAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 |
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| CDS CAA 72 bp | TCCTTTACCACCACCACTTCGGAGATCTGCCCATACTaGGAGAAGACCTGCTCCAGCGCCTGCTCGTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: SFTTTTSEICPY*EKTCSSACSLV Trigger: CACCAACGAGCAGGCGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTCCGAAGTGGTGGTGGTAAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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| CDS GCA 72 bp | TTGTCAGAAGACTTGCCAGCCTGGTCAACTCTGATCTaGCGCCCGTCCACAGACTTCCCATTCATAGCCATC | + |
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Preference number: 6 (lower is better) Translates to: LSEDLPAWSTLI*RPSTDFPFIAI Trigger: GATGGCTATGAATGGGAAGTCTGTGGACGGGCGGCAGATCAGAGTTGACCAGGCTGGCAAGTCTTCTGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054666.7 ENSMUST00000105365.9 ENSMUST00000154726.8 |
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