Pregenerated sensors for CIR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041777Ensembl transcript IDs: ENSMUST00000058615.10
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCTGTCTCAAAGAGAAACCGTTCCCTCCACTCCCAACATACACCTTTAAATACAGCACCATGGATTTTCTaGAGGAAGACATTCTACCCA | + |
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Preference number: 2 (lower is better) Translates to: PVSKRNRSLHSQHTPLNTAPWIF*RKTFYP Trigger: TGGGTAGAATGTCTTCCTTCAGAAAATCCATGGTGC...TGTATTTAAAGGTGTATGTTGGGAGTGGAGGGAACGGTTTCTCTTTGAGACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| 3UTR-3UTR TCA 90 bp | ATTTACAGGTGCAAAGTTAAGGTTGATAATCAGTTGGTCTTAAATGTGGACCTGAGGGTCCTTACCAAGTaGAGGAGGGTGCAGTTAGTG | + |
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Preference number: 2 (lower is better) Translates to: IYRCKVKVDNQLVLNVDLRVLTK*RRVQLV Trigger: CACTAACTGCACCCTCCTTCACTTGGTAAGGACCCT...CAGGTCCACATTTAAGACCAACTGATTATCAACCTTAACTTTGCACCTGTAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CCA 90 bp | ACCCTAAATTCCCTGCAAATATCTGCAAACTTAAGCTTGTGGTACAACAGTGCTACTAGGGCTCCGGTGTaGCCGGCTCCTCACCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: TLNSLQISANLSLWYNSATRAPV*PAPHLP Trigger: AGGGAGGTGAGGAGCCGGCCACACCGGAGCCCTAGT...AGCACTGTTGTACCACAAGCTTAAGTTTGCAGATATTTGCAGGGAATTTAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CCA 90 bp | TACCAAGTGAAGGAGGGTGCAGTTAGTGTCAGACTGACTCCAGGACTTGGAAACCTTCACCATGGCTTCTaGTGCCCTTTCTTCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: YQVKEGAVSVRLTPGLGNLHHGF*CPFFPS Trigger: AGAAGGGAAGAAAGGGCACCAGAAGCCATGGTGAAG...GTTTCCAAGTCCTGGAGTCAGTCTGACACTAACTGCACCCTCCTTCACTTGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CCA 90 bp | CAGGCTAGCAAGAGCTACATAGTAATGGGAAGACCCTGTCTCAAAGAGAAACCGTGGTCACCTTCACCATaGCTTCTGGTGCCCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: QASKSYIVMGRPCLKEKPWSPSP*LLVPFL Trigger: AAGAAAGGGCACCAGAAGCCATGGTGAAGGTGACCA...CGGTTTCTCTTTGAGACAGGGTCTTCCCATTACTATGTAGCTCTTGCTAGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | AACCAGAAAGGCTATTGTGGGAGGAGACAGAATAACACTCCCCTCAAGATATACCACCATGGCTTCTGGTaGCCTTTCTTCCCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: NQKGYCGRRQNNTPLKIYHHGFW*PFFPSA Trigger: AGCAGAAGGGAAGAAAGGGCACCAGAAGCCATGGTG...GTATATCTTGAGGGGAGTGTTATTCTGTCTCCTCCCACAATAGCCTTTCTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR TCA 90 bp | AGACCCTGTCTCAAAGAGAAACCGTTCCCTCCACTCCCAACATACACCTTTAAACCATCCATACCTTCTTaGTGTTGGATTTGGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: RPCLKEKPFPPLPTYTFKPSIPS*CWIWTQ Trigger: CTGCGTCCAAATCCAACATCAAGAAGGTATGGATGG...TTTAAAGGTGTATGTTGGGAGTGGAGGGAACGGTTTCTCTTTGAGACAGGGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | ACCCTAAATTCCCTGCAAATATCTGCAAACTTAAGCTTGTGGTACAACAGTGCTCCCTTTCTTCCCTTCTaGTCTTCACTAGGGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: TLNSLQISANLSLWYNSAPFLPF*SSLGLR Trigger: CCGGAGCCCTAGTGAAGAGCAGAAGGGAAGAAAGGG...AGCACTGTTGTACCACAAGCTTAAGTTTGCAGATATTTGCAGGGAATTTAGGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR TCA 90 bp | AACCAGAAAGGCTATTGTGGGAGGAGACAGAATAACACTCCCCTCAAGATATACTGCGACATAGTCCTGTaGTGGATCATTTGCGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: NQKGYCGRRQNNTPLKIYCDIVL*WIICGQ Trigger: TTGACCGCAAATGATCCATCACAGGACTATGTCGCA...GTATATCTTGAGGGGAGTGTTATTCTGTCTCCTCCCACAATAGCCTTTCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | TACCAAGTGAAGGAGGGTGCAGTTAGTGTCAGACTGACTCCAGGACTTGGAAACTTATCATACGACTCCTaGTCTTTAAGGTACTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: YQVKEGAVSVRLTPGLGNLSYDS*SLRYCC Trigger: GCAACAGTACCTTAAAGAGCAGGAGTCGTATGATAA...GTTTCCAAGTCCTGGAGTCAGTCTGACACTAACTGCACCCTCCTTCACTTGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | GTTAAGGTTGATAATCAGTTGGTCTTAAATGTGGACCTGCTATACTCACAGGGTTTCTTCTCTGGACTGTaGCGGTGGCTTCTGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: VKVDNQLVLNVDLLYSQGFFSGL*RWLLDV Trigger: GACATCCAGAAGCCACCGGCACAGTCCAGAGAAGAA...ACCCTGTGAGTATAGCAGGTCCACATTTAAGACCAACTGATTATCAACCTTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CCA 90 bp | AGACCCTGTCTCAAAGAGAAACCGTTCCCTCCACTCCCAACATACACCTTTAAATTCTTTCTTAACTCCTaGTGGGGCCTCGTACATGAA | + |
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Preference number: 4 (lower is better) Translates to: RPCLKEKPFPPLPTYTFKFFLNS*WGLVHE Trigger: TTCATGTACGAGGCCCCACCAGGAGTTAAGAAAGAA...TTTAAAGGTGTATGTTGGGAGTGGAGGGAACGGTTTCTCTTTGAGACAGGGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | ATTTACAGGTGCAAAGTTAAGGTTGATAATCAGTTGGTCTTAAATGTGGACCTGTTCCTGAGGAGCTTCTaGTTCTGCTTGGTGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: IYRCKVKVDNQLVLNVDLFLRSF*FCLVVS Trigger: GCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAA...CAGGTCCACATTTAAGACCAACTGATTATCAACCTTAACTTTGCACCTGTAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | ACCCTAAATTCCCTGCAAATATCTGCAAACTTAAGCTTGTGGTACAACAGTGCTCAGAATGGACCCACATaGTATTCTCCCCAGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: TLNSLQISANLSLWYNSAQNGPT*YSPQNS Trigger: AGAGTTCTGGGGAGAATAGCATGTGGGTCCATTCTG...AGCACTGTTGTACCACAAGCTTAAGTTTGCAGATATTTGCAGGGAATTTAGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR GCA 90 bp | GTTAAGGTTGATAATCAGTTGGTCTTAAATGTGGACCTGCTATACTCACAGGGTCCCTGTCACTGTGACTaGTGGAAAGTTCTTCGTAAA | + |
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Preference number: 4 (lower is better) Translates to: VKVDNQLVLNVDLLYSQGPCHCD*WKVLRK Trigger: TTTACGAAGAACTTTCCAGCAGTCACAGTGACAGGG...ACCCTGTGAGTATAGCAGGTCCACATTTAAGACCAACTGATTATCAACCTTAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CCA 90 bp | GTTAAGGTTGATAATCAGTTGGTCTTAAATGTGGACCTGCTATACTCACAGGGTGATTTGGACGCAGGATaGAAGTCCTTCTTACACATG | + |
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Preference number: 4 (lower is better) Translates to: VKVDNQLVLNVDLLYSQGDLDAG*KSFLHM Trigger: CATGTGTAAGAAGGACTTCCATCCTGCGTCCAAATC...ACCCTGTGAGTATAGCAGGTCCACATTTAAGACCAACTGATTATCAACCTTAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CCA 90 bp | GTTAAGGTTGATAATCAGTTGGTCTTAAATGTGGACCTGCTATACTCACAGGGTCCTCCTTACAGTCACTaGATTTACTTTCAGAACATT | + |
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Preference number: 4 (lower is better) Translates to: VKVDNQLVLNVDLLYSQGPPYSH*IYFQNI Trigger: AATGTTCTGAAAGTAAATCCAGTGACTGTAAGGAGG...ACCCTGTGAGTATAGCAGGTCCACATTTAAGACCAACTGATTATCAACCTTAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| 3UTR CAA 72 bp | TCACCACCACCACAACAACAACAAAACAAAAACTACTaGTATACCCTAAATTCCCTGCAAATATCTGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: SPPPQQQQNKNY*YTLNSLQISAN Trigger: GTTTGCAGATATTTGCAGGGAATTTAGGGTATACAAGTAGTTTTTGTTTTGTTGTTGTTGTGGTGGTGGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS GCA 90 bp | GTGGCCGGCTCCTCACCTCCCTGTGCTTCTGACGGTAAGGACTCCTaGTTCTGCTTCGCCGGCTGCTCTCAGCCCGGCTACGGCTCCGAC | + |
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Preference number: 5 (lower is better) Translates to: VAGSSPPCASDGKDS*FCFAGCSQPGYGSD Trigger: GTCGGAGCCGTAGCCGGGCTGAGAGCAGCCGGCGAAGCAGAAGCAGGAGTCCTTACCGTCAGAAGCACAGGGAGGTGAGGAGCCGGCCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS GCA 90 bp | GGCTCCTCACCTCCCTGTGCTTCTGACGGTAAGGACTCCTGCTTCTaGTTCGCCGGCTGCTCTCAGCCCGGCTACGGCTCCGACTTCGGA | + |
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Preference number: 5 (lower is better) Translates to: GSSPPCASDGKDSCF*FAGCSQPGYGSDFG Trigger: TCCGAAGTCGGAGCCGTAGCCGGGCTGAGAGCAGCCGGCGAAGCAGAAGCAGGAGTCCTTACCGTCAGAAGCACAGGGAGGTGAGGAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CCA 90 bp | GCTCCGACTTCGGATTCCCCGATTTCTGTCAGACCCTTTCTTCTCTaGACTGTGCCGGTGGCTTCTGGATGTCCGGTCAGAAGCAGAATG | + |
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Preference number: 5 (lower is better) Translates to: APTSDSPISVRPFLL*TVPVASGCPVRSRM Trigger: CATTCTGCTTCTGACCGGACATCCAGAAGCCACCGGCACAGTCCAGAGAAGAAAGGGTCTGACAGAAATCGGGGAATCCGAAGTCGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CCA 90 bp | GATTTCTGTCAGACCCTTTCTTCTCTGGACTGTGCCGGTGGCTTCTaGATGTCCGGTCAGAAGCAGAATGGACCCACATGCTATTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: DFCQTLSSLDCAGGF*MSGQKQNGPTCYSP Trigger: GGGAGAATAGCATGTGGGTCCATTCTGCTTCTGACCGGACATCCAGAAGCCACCGGCACAGTCCAGAGAAGAAAGGGTCTGACAGAAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CAA 90 bp | TTGATGCCCAGGTGGTTGCTCCGAAGCTCTGTTGAGCCTGCTGCCTCTCCCTTTCATACCTTCTTGATGTaGGATTTGGACGCAGGATGG | + |
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Preference number: 5 (lower is better) Translates to: LMPRWLLRSSVEPAASPFHTFLM*DLDAGW Trigger: CCATCCTGCGTCCAAATCCAACATCAAGAAGGTATG...AAAGGGAGAGGCAGCAGGCTCAACAGAGCTTCGGAGCAACCACCTGGGCATCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CAA 90 bp | TTGATGCCCAGGTGGTTGCTCCGAAGCTCTGTTGAGCCTGCTGCCTCTCCCTTTGCCATCCATACCTTCTaGATGTTGGATTTGGACGCA | + |
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Preference number: 5 (lower is better) Translates to: LMPRWLLRSSVEPAASPFAIHTF*MLDLDA Trigger: TGCGTCCAAATCCAACATCAAGAAGGTATGGATGGC...AAAGGGAGAGGCAGCAGGCTCAACAGAGCTTCGGAGCAACCACCTGGGCATCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CAA 90 bp | ACCCTAAATTCCCTGCAAATATCTGCAAACTTAAGCTTGTGGTACAACAGTGCTCTTCTTCACAGTCACTaGCGACATAGTCCTGTGATG | + |
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Preference number: 5 (lower is better) Translates to: TLNSLQISANLSLWYNSALLHSH*RHSPVM Trigger: CATCACAGGACTATGTCGCAAGTGACTGTGAAGAAG...AGCACTGTTGTACCACAAGCTTAAGTTTGCAGATATTTGCAGGGAATTTAGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CAA 90 bp | AACCAGAAAGGCTATTGTGGGAGGAGACAGAATAACACTCCCCTCAAGATATACGAAGAGGAAGGGGATTaGTTTTTACGTTTCTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: NQKGYCGRRQNNTPLKIYEEEGD*FLRFLC Trigger: ACACAAGAAACGTAAAAACAAATCCCCTTCCTCTTC...GTATATCTTGAGGGGAGTGTTATTCTGTCTCCTCCCACAATAGCCTTTCTGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS-3UTR CAA 90 bp | AGACCCTGTCTCAAAGAGAAACCGTTCCCTCCACTCCCAACATACACCTTTAAATCTCTTTTCTTTTCTTaGTTATCACTCTCACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RPCLKEKPFPPLPTYTFKSLFFS*LSLSLL Trigger: CAGCAGTGAGAGTGATAACAAAGAAAAGAAAAGAGA...TTTAAAGGTGTATGTTGGGAGTGGAGGGAACGGTTTCTCTTTGAGACAGGGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS GCA 72 bp | TCCTCACCTCCCTGTGCTTCTGACGGTAAGGACTCCTaGTTCTGCTTCGCCGGCTGCTCTCAGCCCGGCTAC | + |
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Preference number: 6 (lower is better) Translates to: SSPPCASDGKDS*FCFAGCSQPGY Trigger: GTAGCCGGGCTGAGAGCAGCCGGCGAAGCAGAAGCAGGAGTCCTTACCGTCAGAAGCACAGGGAGGTGAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CCA 72 bp | TCGGATTCCCCGATTTCTGTCAGACCCTTTCTTCTCTaGACTGTGCCGGTGGCTTCTGGATGTCCGGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SDSPISVRPFLL*TVPVASGCPVR Trigger: TCTGACCGGACATCCAGAAGCCACCGGCACAGTCCAGAGAAGAAAGGGTCTGACAGAAATCGGGGAATCCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS GCA 72 bp | TTCTGGATGTCCGGTCAGAAGCAGAATGGACCCACATaGTATTCTCCCCAGAACTCTCTTGTTTTGGAAACC | + |
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Preference number: 6 (lower is better) Translates to: FWMSGQKQNGPT*YSPQNSLVLET Trigger: GGTTTCCAAAACAAGAGAGTTCTGGGGAGAATAGCATGTGGGTCCATTCTGCTTCTGACCGGACATCCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CAA 72 bp | AGTCTATCCAATTTCCTGAGGAGCTTCTGCTTCTGCTaGGTGGTGAGCGACTTTAAGAACTCAACTTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: SLSNFLRSFCFC*VVSDFKNSTSG Trigger: CCCTGAAGTTGAGTTCTTAAAGTCGCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAAATTGGATAGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS GCA 72 bp | TCAAGTCTATCCAATTTCCTGAGGAGCTTCTGCTTCTaGTTGGTGGTGAGCGACTTTAAGAACTCAACTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSLSNFLRSFCF*LVVSDFKNSTS Trigger: TGAAGTTGAGTTCTTAAAGTCGCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAAATTGGATAGACTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CAA 90 bp | TTCTTTTCAAGTCTATCCAATTTCCTGAGGAGCTTCTGCTTCTGCTaGGTGGTGAGCGACTTTAAGAACTCAACTTCAGGGTCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: FFSSLSNFLRSFCFC*VVSDFKNSTSGSSS Trigger: TGAAGAAGACCCTGAAGTTGAGTTCTTAAAGTCGCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAAATTGGATAGACTTGAAAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS GCA 72 bp | TTCTTTTCAAGTCTATCCAATTTCCTGAGGAGCTTCTaGTTCTGCTTGGTGGTGAGCGACTTTAAGAACTCA | + |
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Preference number: 6 (lower is better) Translates to: FFSSLSNFLRSF*FCLVVSDFKNS Trigger: TGAGTTCTTAAAGTCGCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAAATTGGATAGACTTGAAAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CAA 72 bp | TTCTTCTTCCTCTTCTCTTTCTCTCTTTTCTTTTCTTaGTTATCACTCTCACTGCTGCTATCTGATGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: FFFLFSFSLFFS*LSLSLLLSDVS Trigger: GGAGACATCAGATAGCAGCAGTGAGAGTGATAACAAAGAAAAGAAAAGAGAGAAAGAGAAGAGGAAGAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CAA 72 bp | TCCTCCTTACAGTCACTGGATTTACTTTCAGAACATTaGGTTTTCTTCTTCTTCTTCCTCTTCTCTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SSLQSLDLLSEH*VFFFFFLFSFS Trigger: AGAGAAAGAGAAGAGGAAGAAGAAGAAGAAAACCAAATGTTCTGAAAGTAAATCCAGTGACTGTAAGGAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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| CDS CAA 90 bp | TTAGGCTTGTCCTCCTTACAGTCACTGGATTTACTTTCAGAACATTaGGTTTTCTTCTTCTTCTTCCTCTTCTCTTTCTCTCTTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LGLSSLQSLDLLSEH*VFFFFFLFSFSLFF Trigger: AAAGAAAAGAGAGAAAGAGAAGAGGAAGAAGAAGAAGAAAACCAAATGTTCTGAAAGTAAATCCAGTGACTGTAAGGAGGACAAGCCTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058615.10 |
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