RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CIITA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022504

Ensembl transcript IDs: ENSMUST00000023147.8, ENSMUST00000230146.2, ENSMUST00000230392.2, ENSMUST00000230395.2, ENSMUST00000230450.2, ENSMUST00000230892.2

Found 657 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTaGGGCTGTCTTTGTACCTGGTGCTGTAAGGGCCTGGAGCTGGTC +
Preference number: 1 (lower is better)
Translates to: GRQPQFCLPALTAAE*GCLCTWCCKGLELV
Trigger: GACCAGCTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTaGTGCTGTAAGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAG +
Preference number: 1 (lower is better)
Translates to: CLPALTAAEWGCLCT*CCKGLELVLGPSEE
Trigger: CTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 90 bp GCCAGTGTTGCCCTTAGCGTCTTCAGAGCCTCTAGGTGGCCCTGTTaGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGT +
Preference number: 1 (lower is better)
Translates to: ASVALSVFRASRWPC*EQQEDMLSHQAGPG
Trigger: ACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAAGACGCTAAGGGCAACACTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 90 bp CAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTGGCATCAGGGCTaGCATGGTGGAGCCACACAGCTCCCTCTGCCAAGACAAGAAAGC +
Preference number: 1 (lower is better)
Translates to: QLPLPRMCQSCWHQG*HGGATQLPLPRQES
Trigger: GCTTTCTTGTCTTGGCAGAGGGAGCTGTGTGGCTCCACCATGCCAGCCCTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 90 bp TCTTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATaGTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTG +
Preference number: 1 (lower is better)
Translates to: SSEPLGGPVGSSRKT*FLTRLALVWTSRHL
Trigger: CAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR GCA 90 bp CAGCGAGCGATACAGATCTGCCTTTCTCCTGACAGGTACAGCAGATaGCTGCCTTGGAGAGTGCCTCAGTGCTGTCCCTGGTGGCCACAG +
Preference number: 1 (lower is better)
Translates to: QRAIQICLSPDRYSR*LPWRVPQCCPWWPQ
Trigger: CTGTGGCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGTCAGGAGAAAGGCAGATCTGTATCGCTCGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp CGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTAAGGGCCTaGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTT +
Preference number: 1 (lower is better)
Translates to: RPQSGAVFVPGAVRA*SWSWGLQKSKTCVL
Trigger: AAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR TCA 90 bp CCAGACAGACCAAAGGCAGCGAGCGATACAGATCTGCCTTTCTCCTaGCAGGTACAGCAGATGCCTGCCTTGGAGAGTGCCTCAGTGCTG +
Preference number: 1 (lower is better)
Translates to: PDRPKAASDTDLPFS*QVQQMPALESASVL
Trigger: CAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGTCAGGAGAAAGGCAGATCTGTATCGCTCGCTGCCTTTGGTCTGTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 90 bp CTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATaGTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCT +
Preference number: 1 (lower is better)
Translates to: LSHQAGPGLDKQALG*FCSSFCPGVSKRRP
Trigger: AGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 90 bp CTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTaGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTG +
Preference number: 1 (lower is better)
Translates to: LLGAAGRHAFSPGWP*SGQAGTWMLLFLVL
Trigger: CAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR GCA 90 bp GTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATaGAGCAGGGCAGTAGGAGAGAGCACTCCACTCTGTACAGTGGTC +
Preference number: 1 (lower is better)
Translates to: VAKADQCGYTELLPG*SRAVGESTPLCTVV
Trigger: GACCACTGTACAGAGTGGAGTGCTCTCTCCTACTGCCCTGCTGCATCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 90 bp ACCTCCCTGCTAGAATATTCTCTGCGATTGTGTTCAGGCCCTGGGTaGAGCAGAGAGGAACCCTGGGTTGTGCTAACAGAGGAAGCCGGA +
Preference number: 1 (lower is better)
Translates to: TSLLEYSLRLCSGPG*SREEPWVVLTEEAG
Trigger: TCCGGCTTCCTCTGTTAGCACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAATATTCTAGCAGGGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 90 bp ATACAGATCTGCCTTTCTCCTGACAGGTACAGCAGATGCCTGCCTTaGAGAGTGCCTCAGTGCTGTCCCTGGTGGCCACAGAAATGGGAC +
Preference number: 1 (lower is better)
Translates to: IQICLSPDRYSRCLP*RVPQCCPWWPQKWD
Trigger: GTCCCATTTCTGTGGCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGTCAGGAGAAAGGCAGATCTGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp CTTCCAGAGGGGAACTTGTTAGTTCTCCCTTCCGTAGTGTGGTCCTaGGAACCAAGCTCGGGTCACCAGGCTTGCTTTATTCCCTCAGCC +
Preference number: 1 (lower is better)
Translates to: LPEGNLLVLPSVVWS*EPSSGHQACFIPSA
Trigger: GGCTGAGGGAATAAAGCAAGCCTGGTGACCCGAGCTTGGTTCCCAGGACCACACTACGGAAGGGAGAACTAACAAGTTCCCCTCTGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp CAAGATTTATTTGTATGCCTGTGCACTGAGCCCACACAGTGCCCGTaGAGTCCACAAGAGGCTGTCAGAACCCCTGTGCCAGGCATTGGC +
Preference number: 1 (lower is better)
Translates to: QDLFVCLCTEPTQCP*SPQEAVRTPVPGIG
Trigger: GCCAATGCCTGGCACAGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCACAGGCATACAAATAAATCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 90 bp CACCCTGAGCCCAAGGTCCTAACAGTTCATAATGTAAGCCTGAGCTaGAGCTGGACCTGTCTCTTTAAGAATCGCCCCCAGCAGCCATGC +
Preference number: 1 (lower is better)
Translates to: HPEPKVLTVHNVSLS*SWTCLFKNRPQQPC
Trigger: GCATGGCTGCTGGGGGCGATTCTTAAAGAGACAGGTCCAGCTGCAGCTCAGGCTTACATTATGAACTGTTAGGACCTTGGGCTCAGGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp GATTCCAGCCTGACTTCTGGGTTGGTGGGCACTGCTGAGCCTGCCTaGCCAGCGGAGTGTGGATTGTTTCAAGTTATTATAGTTCGGCTG +
Preference number: 1 (lower is better)
Translates to: DSSLTSGLVGTAEPA*PAECGLFQVIIVRL
Trigger: CAGCCGAACTATAATAACTTGAAACAATCCACACTCCGCTGGCCAGGCAGGCTCAGCAGTGCCCACCAACCCAGAAGTCAGGCTGGAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp CATGACCTCCCTGCTAGAATATTCTCTGCGATTGTGTTCAGGCCCTaGGTGCAGCAGAGAGGAACCCTGGGTTGTGCTAACAGAGGAAGC +
Preference number: 1 (lower is better)
Translates to: HDLPARIFSAIVFRP*VQQRGTLGCANRGS
Trigger: GCTTCCTCTGTTAGCACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAATATTCTAGCAGGGAGGTCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 90 bp GAGCCCAAGGTCCTAACAGTTCATAATGTAAGCCTGAGCTGCAGCTaGACCTGTCTCTTTAAGAATCGCCCCCAGCAGCCATGCAGACCA +
Preference number: 1 (lower is better)
Translates to: EPKVLTVHNVSLSCS*TCLFKNRPQQPCRP
Trigger: TGGTCTGCATGGCTGCTGGGGGCGATTCTTAAAGAGACAGGTCCAGCTGCAGCTCAGGCTTACATTATGAACTGTTAGGACCTTGGGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp CAGAAACTTCCAGAGGGGAACTTGTTAGTTCTCCCTTCCGTAGTGTaGTCCTGGGAACCAAGCTCGGGTCACCAGGCTTGCTTTATTCCC +
Preference number: 1 (lower is better)
Translates to: QKLPEGNLLVLPSVV*SWEPSSGHQACFIP
Trigger: GGGAATAAAGCAAGCCTGGTGACCCGAGCTTGGTTCCCAGGACCACACTACGGAAGGGAGAACTAACAAGTTCCCCTCTGGAAGTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR TCA 90 bp GGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAAGCTaGGTCCACAGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCC +
Preference number: 1 (lower is better)
Translates to: GDGMLTLMGYGPQKS*VHSTQFKVQHGQCS
Trigger: GGAACACTGACCATGCTGGACCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR TCA 90 bp ACCCAGGCAGCAGACAGGGTTCTCGGGGGATCTGGGTTCAAATCCTaGCTACGCGCAACAGCTTGCTATATGGCCTTTGGCAAAACAAAA +
Preference number: 1 (lower is better)
Translates to: TQAADRVLGGSGFKS*LRATACYMAFGKTK
Trigger: TTTTGTTTTGCCAAAGGCCATATAGCAAGCTGTTGCGCGTAGTCAGGATTTGAACCCAGATCCCCCGAGAACCCTGTCTGCTGCCTGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 90 bp CCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGTCCAGCATaGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGG +
Preference number: 1 (lower is better)
Translates to: PTEKLSPQYPVQGPA*SVFPEYILVQSTAG
Trigger: CCCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR TCA 90 bp CCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCCGACTCAGCTTTaGCCTAAAGTTTATGGAAACAGTGCCACAAGTAGAAAGAGCTAC +
Preference number: 1 (lower is better)
Translates to: PFGSHPGSGPGPTQL*PKVYGNSATSRKSY
Trigger: GTAGCTCTTTCTACTTGTGGCACTGTTTCCATAAACTTTAGGTCAAAGCTGAGTCGGGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR TCA 90 bp GACACAGACAACTGCACTCACAAAGTACTTAGAGCAGTCAGAATCTaGGAACTAGGTGTGGGTGGGAGTCAGCAGGAACCAGGAGAGGTG +
Preference number: 1 (lower is better)
Translates to: DTDNCTHKVLRAVRI*ELGVGGSQQEPGEV
Trigger: CACCTCTCCTGGTTCCTGCTGACTCCCACCCACACCTAGTTCTCAGATTCTGACTGCTCTAAGTACTTTGTGAGTGCAGTTGTCTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR GCA 90 bp CAAGAAATAGTTCACAGGCTGACGCAAGCTGAGTCCCACCAACAGTaGCTGGGCACACAACACATGACCTCCCTGCTAGAATATTCTCTG +
Preference number: 1 (lower is better)
Translates to: QEIVHRLTQAESHQQ*LGTQHMTSLLEYSL
Trigger: CAGAGAATATTCTAGCAGGGAGGTCATGTGTTGTGTGCCCAGGCACTGTTGGTGGGACTCAGCTTGCGTCAGCCTGTGAACTATTTCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 90 bp AAGATCTTTGCAGTGAAGACAGGATCTAGGCAGTGGTGGGCTGTATaGTGGGCACACGGGCGCATGCAGAGTGTTGTAGAAACAATACTG +
Preference number: 1 (lower is better)
Translates to: KIFAVKTGSRQWWAV*WAHGRMQSVVETIL
Trigger: CAGTATTGTTTCTACAACACTCTGCATGCGCCCGTGTGCCCACCATACAGCCCACCACTGCCTAGATCCTGTCTTCACTGCAAAGATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 90 bp CCAGGAGAGGTGAAGTTACTGCTTCAGTGTCCAGAGTTTCCGTCTTaGAGGGTGAAAAGTTCTAGAAAGGGAGGTAGCAATGGTTCCAGA +
Preference number: 1 (lower is better)
Translates to: PGEVKLLLQCPEFPS*RVKSSRKGGSNGSR
Trigger: TCTGGAACCATTGCTACCTCCCTTTCTAGAACTTTTCACCCTCCAAGACGGAAACTCTGGACACTGAAGCAGTAACTTCACCTCTCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR TCA 90 bp CACATGACCTTTATGTATTCAAGATTTATTTGTATGCCTGTGCACTaGGCCCACACAGTGCCCGTGGAGTCCACAAGAGGCTGTCAGAAC +
Preference number: 1 (lower is better)
Translates to: HMTFMYSRFICMPVH*AHTVPVESTRGCQN
Trigger: GTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCACAGGCATACAAATAAATCTTGAATACATAAAGGTCATGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 90 bp CCTTCCGTAGTGTGGTCCTGGGAACCAAGCTCGGGTCACCAGGCTTaGTTTATTCCCTCAGCCATTTTGCTGACCCATTTTATTAATATT +
Preference number: 1 (lower is better)
Translates to: PSVVWSWEPSSGHQA*FIPSAILLTHFINI
Trigger: AATATTAATAAAATGGGTCAGCAAAATGGCTGAGGGAATAAAGCAAGCCTGGTGACCCGAGCTTGGTTCCCAGGACCACACTACGGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 90 bp ATCTCTGTCCCCCAAACTGTCTTTGCTGTACTGCCGAGTACAACCTaGTCAGAATCCACAAGCATTCATGGAAATTCACATCAGCTACCC +
Preference number: 1 (lower is better)
Translates to: ISVPQTVFAVLPSTT*SESTSIHGNSHQLP
Trigger: GGGTAGCTGATGTGAATTTCCATGAATGCTTGTGGATTCTGAGCAGGTTGTACTCGGCAGTACAGCAAAGACAGTTTGGGGGACAGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR TCA 90 bp CTCTGCTTTCTAAGTGCTGGGGTTAAAGGTGTATGCCACCACACATaGCCTTTATGTATTCAAGATTTATTTGTATGCCTGTGCACTGAG +
Preference number: 1 (lower is better)
Translates to: LCFLSAGVKGVCHHT*PLCIQDLFVCLCTE
Trigger: CTCAGTGCACAGGCATACAAATAAATCTTGAATACATAAAGGTCATGTGTGGTGGCATACACCTTTAACCCCAGCACTTAGAAAGCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR TCA 90 bp ACAGGTACAGCAGATGCCTGCCTTGGAGAGTGCCTCAGTGCTGTCCCTGGTGGCGTTGGTGGGCACTGCTaGGCCTGCCTGGCCAGCGGA +
Preference number: 2 (lower is better)
Translates to: TGTADACLGECLSAVPGGVGGHC*ACLASG
Trigger: TCCGCTGGCCAGGCAGGCTCAGCAGTGCCCACCAAC...GCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp GAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCCTGCCTTTaGGTTCACACCCAGGGTCTGGGCCAGGCCCGACTCAGCTTTGAC +
Preference number: 2 (lower is better)
Translates to: EELPATAPKQTTPCL*VHTQGLGQARLSFD
Trigger: GTCAAAGCTGAGTCGGGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGGGCCCACAGAAAAGCTaGGTCCACAGTACCCAGTTC +
Preference number: 2 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRGPQKS*VHSTQF
Trigger: GAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCC...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGGCAGGGCCCAACTCTaGGCCTGCAGGGGCAGGGTG +
Preference number: 2 (lower is better)
Translates to: FLTRLALVWTSRHLDASVGRAQL*ACRGRV
Trigger: CACCCTGCCCCTGCAGGCTCAGAGTTGGGCCCTGCC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGGCCTGGAGCTGGTCTTaGGGCCTTCAGAAGAGCAAG +
Preference number: 2 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVAWSWS*GLQKSK
Trigger: CTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGC...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGGGCTGTCTTTGTACCTaGTGCTGTAAGGGCCTGGAG +
Preference number: 2 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRGCLCT*CCKGLE
Trigger: CTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCC...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTCACCAGGCTGGCCCTaGTCTGGACAAGCAGGCACT +
Preference number: 2 (lower is better)
Translates to: REGEARRTPRHSPEADHSSPGWP*SGQAGT
Trigger: AGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGGCCTGGAGCTGGTCTTaGGGCCTTCAGAAGAGCAAG +
Preference number: 2 (lower is better)
Translates to: PELKGGVPEETGAAALVLAWSWS*GLQKSK
Trigger: CTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGC...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGGGCTGTCTTTGTACCTaGTGCTGTAAGGGCCTGGAG +
Preference number: 2 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVGCLCT*CCKGLE
Trigger: CTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCC...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp TTCTCTGCGATTGTGTTCAGGCCCTGGGTGCAGCAGAGAGGAACCCTGGGTTGTGGAGGGGCCTGGTACTaGATAACAGGGCCTGGGCGG +
Preference number: 2 (lower is better)
Translates to: FSAIVFRPWVQQRGTLGCGGAWY*ITGPGR
Trigger: CCGCCCAGGCCCTGTTATCCAGTACCAGGCCCCTCC...ACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR-3UTR TCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCAGGGCCCAACTCTaGGCCTGCAGGGGCAGGGTG +
Preference number: 2 (lower is better)
Translates to: SRHLDASVPRSVLECRREGRAQL*ACRGRV
Trigger: CACCCTGCCCCTGCAGGCTCAGAGTTGGGCCCTGCC...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTCTAGGTGGCCCTGTTaGGAGCAGCAGGAAGACATG +
Preference number: 2 (lower is better)
Translates to: REGEARRTPRHSPEADHSSRWPC*EQQEDM
Trigger: CATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCAGGGTGATGGGATGTTaGCTCTTATGGGCTATGGCC +
Preference number: 2 (lower is better)
Translates to: REGEARRTPRHSPEADHSRVMGC*LLWAMA
Trigger: GGCCATAGCCCATAAGAGTCAACATCCCATCACCCT...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCCCTGCAGGGGCAGGGTaGTGGGATGTTGACTCTTAT +
Preference number: 2 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSPAGAG*WDVDSY
Trigger: ATAAGAGTCAACATCCCATCACCCTGCCCCTGCAGG...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR GCA 90 bp GGCTCAGTGATTGAGAGCACTTGCTGCCTTCTCAGGGGACCTGAGTTCTCTTCCGAGCAGCGGCACTGGTaGTGCCAAGCCCTTTTGGGC +
Preference number: 2 (lower is better)
Translates to: GSVIESTCCLLRGPEFSSEQRHW*CQALLG
Trigger: GCCCAAAAGGGCTTGGCAGCACCAGTGCCGCTGCTC...GGAAGAGAACTCAGGTCCCCTGAGAAGGCAGCAAGTGCTCTCAATCACTGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp CCCTGGGTGCAGCAGAGAGGAACCCTGGGTTGTGCTAACAGAGGAAGCCGGACAAGAACTAGGTGTGGGTaGGAGTCAGCAGGAACCAGG +
Preference number: 2 (lower is better)
Translates to: PWVQQRGTLGCANRGSRTRTRCG*ESAGTR
Trigger: CCTGGTTCCTGCTGACTCCCACCCACACCTAGTTCT...TGTCCGGCTTCCTCTGTTAGCACAACCCAGGGTTCCTCTCTGCTGCACCCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CAA 90 bp TGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTaGTCCTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCT +
Preference number: 2 (lower is better)
Translates to: CFCSSFCPGVSKRRP*SSRVNPRKAAPVLS
Trigger: AGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAGGACAAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR GCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCAAGCAGGCACTTGGATaGTTCTGTTCCTCGTTCTGT +
Preference number: 2 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQAKQALG*FCSSFC
Trigger: ACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTT...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACGGTGCTGTAAGGGCCTaGAGCTGGTCTTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHGAVRA*SWSWGL
Trigger: AAGGCCCCAAGACCAGCTCCAGGCCCTTACAGCACC...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGGCTGTCTTTGTACCTaGTGCTGTAAGGGCCTGGAG +
Preference number: 2 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSGCLCT*CCKGLE
Trigger: CTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTGGCTGTCTTTGTACCTaGTGCTGTAAGGGCCTGGAG +
Preference number: 2 (lower is better)
Translates to: TRLALVWTSRHLDASVPRGCLCT*CCKGLE
Trigger: CTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCC...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGCCTGCAGGGGCAGGGTaGTGGGATGTTGACTCTTAT +
Preference number: 2 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLPAGAG*WDVDSY
Trigger: ATAAGAGTCAACATCCCATCACCCTGCCCCTGCAGG...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR GCA 90 bp TGCACTGAGCCCACACAGTGCCCGTGGAGTCCACAAGAGGCTGTCAGAACCCCTTCGGGTCACCAGGCTTaGTTTATTCCCTCAGCCATT +
Preference number: 2 (lower is better)
Translates to: CTEPTQCPWSPQEAVRTPSGHQA*FIPSAI
Trigger: AATGGCTGAGGGAATAAAGCAAGCCTGGTGACCCGA...AGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCAGTAAGGGCCTGGAGCTaGTCTTGGGGCCTTCAGAAG +
Preference number: 2 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSVRAWS*SWGLQK
Trigger: CTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCTTAC...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGGGTGCTGTAAGGGCCTaGAGCTGGTCTTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRGAVRA*SWSWGL
Trigger: AAGGCCCCAAGACCAGCTCCAGGCCCTTACAGCACC...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp GGCTCAGTGATTGAGAGCACTTGCTGCCTTCTCAGGGGACCTGAGTTCTCTTCCGGATCTAGGCAGTGGTaGGCTGTATGGTGGGCACAC +
Preference number: 2 (lower is better)
Translates to: GSVIESTCCLLRGPEFSSGSRQW*AVWWAH
Trigger: GTGTGCCCACCATACAGCCCACCACTGCCTAGATCC...GGAAGAGAACTCAGGTCCCCTGAGAAGGCAGCAAGTGCTCTCAATCACTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR TCA 90 bp GGCTCAGTGATTGAGAGCACTTGCTGCCTTCTCAGGGGACCTGAGTTCTCTTCCCCTGCAGGGGCAGGGTaGTGGGATGTTGACTCTTAT +
Preference number: 2 (lower is better)
Translates to: GSVIESTCCLLRGPEFSSPAGAG*WDVDSY
Trigger: ATAAGAGTCAACATCCCATCACCCTGCCCCTGCAGG...GGAAGAGAACTCAGGTCCCCTGAGAAGGCAGCAAGTGCTCTCAATCACTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTGCAGGGGCAGGGTaGTGGGATGTTGACTCTTAT +
Preference number: 2 (lower is better)
Translates to: FLTRLALVWTSRHLDASVPAGAG*WDVDSY
Trigger: ATAAGAGTCAACATCCCATCACCCTGCCCCTGCAGG...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR GCA 90 bp GGGCTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGAAGCAGCAGGAAGACATaGTTTCTCACCAGGCTGGCC +
Preference number: 2 (lower is better)
Translates to: GLAVAKADQCGYTELLPGSSRKT*FLTRLA
Trigger: GGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCT...TCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGTTCAAGGTCCAGCATaGTCAGTGTTCCCAGAGTAC +
Preference number: 2 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAVQGPA*SVFPEY
Trigger: GTACTCTGGGAACACTGACCATGCTGGACCTTGAAC...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp TTCTCTGCGATTGTGTTCAGGCCCTGGGTGCAGCAGAGAGGAACCCTGGGTTGTGGTTCTCGGGGGATCTaGGTTCAAATCCTGACTACG +
Preference number: 2 (lower is better)
Translates to: FSAIVFRPWVQQRGTLGCGSRGI*VQILTT
Trigger: CGTAGTCAGGATTTGAACCCAGATCCCCCGAGAACC...ACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CAA 90 bp ACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTaGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAA +
Preference number: 2 (lower is better)
Translates to: TCFLTRLALVWTSRH*DASVPRSVLECRRE
Trigger: TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGGGCCCACAGAAAAGCTaGGTCCACAGTACCCAGTTC +
Preference number: 2 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRGPQKS*VHSTQF
Trigger: GAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCC...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCGACTCTTATGGGCTATaGCCCACAGAAAAGCTGAGT +
Preference number: 2 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFDSYGL*PTEKLS
Trigger: ACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAGTC...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp TGCACTGAGCCCACACAGTGCCCGTGGAGTCCACAAGAGGCTGTCAGAACCCCTGGTGTTTTGCAGTTTTaGAAGCATCTTAGGCCCTTG +
Preference number: 2 (lower is better)
Translates to: CTEPTQCPWSPQEAVRTPGVLQF*KHLRPL
Trigger: CAAGGGCCTAAGATGCTTCCAAAACTGCAAAACACC...AGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR TCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCCACAGAAAAGCTaGGTCCACAGTACCCAGTTC +
Preference number: 2 (lower is better)
Translates to: SRHLDASVPRSVLECRREGPQKS*VHSTQF
Trigger: GAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCC...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp CTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATGCAGGGTGATGGGATGTTaGCTCTTATGGGCTATGGCC +
Preference number: 2 (lower is better)
Translates to: LAVAKADQCGYTELLPGCRVMGC*LLWAMA
Trigger: GGCCATAGCCCATAAGAGTCAACATCCCATCACCCT...GCATCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGTTCAAGGTCCAGCATaGTCAGTGTTCCCAGAGTAC +
Preference number: 2 (lower is better)
Translates to: FLTRLALVWTSRHLDASVVQGPA*SVFPEY
Trigger: GTACTCTGGGAACACTGACCATGCTGGACCTTGAAC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAGTTCAAGGTCCAGCATaGTCAGTGTTCCCAGAGTAC +
Preference number: 2 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKVQGPA*SVFPEY
Trigger: GTACTCTGGGAACACTGACCATGCTGGACCTTGAAC...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR TCA 90 bp CTCTGTCCCCCAAACTGTCTTTGCTGTACTGCCGAGTACAACCTGCTCAGAATCTCTGGGTTCAAATCCTaGCTACGCGCAACAGCTTGC +
Preference number: 2 (lower is better)
Translates to: LCPPNCLCCTAEYNLLRISGFKS*LRATAC
Trigger: GCAAGCTGTTGCGCGTAGTCAGGATTTGAACCCAGA...GATTCTGAGCAGGTTGTACTCGGCAGTACAGCAAAGACAGTTTGGGGGACAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR-3UTR GCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCAAAGCAGGCACTTGGATaGTTCTGTTCCTCGTTCTGT +
Preference number: 2 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSKQALG*FCSSFC
Trigger: ACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTT...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACGACTCTTATGGGCTATaGCCCACAGAAAAGCTGAGT +
Preference number: 2 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHDSYGL*PTEKLS
Trigger: ACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAGTC...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCAGAAGATGTCCCCAGATaGGACTTGTGGGATAAACCA +
Preference number: 2 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSEDVPR*DLWDKP
Trigger: TGGTTTATCCCACAAGTCCCATCTGGGGACATCTTC...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp GGGTTGGTGGGCACTGCTGAGCCTGCCTGGCCAGCGGAGTGTGGATaGTTTCAAGTTATTATAGTTCGGCTGGTTTGGTTTGGTTTTGTT +
Preference number: 2 (lower is better)
Translates to: GLVGTAEPAWPAECG*FQVIIVRLVWFGFV
Trigger: AACAAAACCAAACCAAACCAGCCGAACTATAATAACTTGAAACAATCCACACTCCGCTGGCCAGGCAGGCTCAGCAGTGCCCACCAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp GGCTCAGTGATTGAGAGCACTTGCTGCCTTCTCAGGGGACCTGAGTTCTCTTCCTTGTTTTGCATTAGATaGGGCAGAAGATGTCCCCAG +
Preference number: 2 (lower is better)
Translates to: GSVIESTCCLLRGPEFSSLFCIR*GRRCPQ
Trigger: CTGGGGACATCTTCTGCCCCATCTAATGCAAAACAA...GGAAGAGAACTCAGGTCCCCTGAGAAGGCAGCAAGTGCTCTCAATCACTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR TCA 90 bp GGGCTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATTCAGTGAACGTAGCTaGTGCATTTTAAGTGTAGTG +
Preference number: 2 (lower is better)
Translates to: GLAVAKADQCGYTELLPGFSERS*CILSVV
Trigger: CACTACACTTAAAATGCATCAGCTACGTTCACTGAA...TCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR GCA 90 bp ACCCAGGAGAGAAGATACTGTGACTCTGCCCATTTTACAGATAAGGAAGCTAAGAATGGGACTTCCATGTaGCACCCTGAGCCCAAGGTC +
Preference number: 2 (lower is better)
Translates to: TQERRYCDSAHFTDKEAKNGTSM*HPEPKV
Trigger: GACCTTGGGCTCAGGGTGGCACATGGAAGTCCCATT...CTTAGCTTCCTTATCTGTAAAATGGGCAGAGTCACAGTATCTTCTCTCCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp AAGGTGTATGCCACCACACATGACCTTTATGTATTCAAGATTTATTaGTATGCCTGTGCACTGAGCCCACACAGTGCCCGTGGAGTCCAC +
Preference number: 2 (lower is better)
Translates to: KVYATTHDLYVFKIY*YACALSPHSARGVH
Trigger: GTGGACTCCACGGGCACTGTGTGGGCTCAGTGCACAGGCATACAAATAAATCTTGAATACATAAAGGTCATGTGTGGTGGCATACACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR GCA 90 bp TACATAACCCAGGAGAGAAGATACTGTGACTCTGCCCATTTTACAGATAAGGAAGAACTGCTCCCAGGATaGAGCAGGGCAGTAGGAGAG +
Preference number: 2 (lower is better)
Translates to: YITQERRYCDSAHFTDKEELLPG*SRAVGE
Trigger: CTCTCCTACTGCCCTGCTGCATCCTGGGAGCAGTTC...TTCCTTATCTGTAAAATGGGCAGAGTCACAGTATCTTCTCTCCTGGGTTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR GCA 90 bp CCTTACCTAATCAGCTCATTAAAAGATGGCAGCCATCATCAACACAGAGTAATGAGGATGTGCCAGTCCTaGTGGCATCAGGGCTGGCAT +
Preference number: 2 (lower is better)
Translates to: PYLISSLKDGSHHQHRVMRMCQS*WHQGWH
Trigger: ATGCCAGCCCTGATGCCAGCAGGACTGGCACATCCT...CATTACTCTGTGTTGATGATGGCTGCCATCTTTTAATGAGCTGATTAGGTAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CCA 90 bp GGGCTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATTTTCACTGCATCTTTaGAAGCTACAAAGATCTTTG +
Preference number: 2 (lower is better)
Translates to: GLAVAKADQCGYTELLPGFSLHL*KLQRSL
Trigger: CAAAGATCTTTGTAGCTTCCAAAGATGCAGTGAAAA...TCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp AAAAGATGGCAGCCATCATCAACACAGAGTAATGAGAGACATTTTTaGGCATTTCCAGACAGACCAAAGGCAGCGAGCGATACAGATCTG +
Preference number: 2 (lower is better)
Translates to: KRWQPSSTQSNERHF*AFPDRPKAASDTDL
Trigger: CAGATCTGTATCGCTCGCTGCCTTTGGTCTGTCTGGAAATGCCAAAAAATGTCTCTCATTACTCTGTGTTGATGATGGCTGCCATCTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp ACTCTGCCCATTTTACAGATAAGGAAGCTAAGGCACAGAAGAAACTaGCCTTGTGTATATGTCAAAATGGAGCATGAAACCAGGCAGCTC +
Preference number: 2 (lower is better)
Translates to: TLPILQIRKLRHRRN*PCVYVKMEHETRQL
Trigger: GAGCTGCCTGGTTTCATGCTCCATTTTGACATATACACAAGGCAAGTTTCTTCTGTGCCTTAGCTTCCTTATCTGTAAAATGGGCAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp GAACCAAGCTCGGGTCACCAGGCTTGCTTTATTCCCTCAGCCATTTaGCTGACCCATTTTATTAATATTGTTTCCACATTGAGCCTTTAC +
Preference number: 2 (lower is better)
Translates to: EPSSGHQACFIPSAI*LTHFINIVSTLSLY
Trigger: GTAAAGGCTCAATGTGGAAACAATATTAATAAAATGGGTCAGCAAAATGGCTGAGGGAATAAAGCAAGCCTGGTGACCCGAGCTTGGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 90 bp CCCTCAGCCATTTTGCTGACCCATTTTATTAATATTGTTTCCACATaGAGCCTTTACATAACCCAGGAGAGAAGATACTGTGACTCTGCC +
Preference number: 2 (lower is better)
Translates to: PSAILLTHFINIVST*SLYITQERRYCDSA
Trigger: GGCAGAGTCACAGTATCTTCTCTCCTGGGTTATGTAAAGGCTCAATGTGGAAACAATATTAATAAAATGGGTCAGCAAAATGGCTGAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTaGTGCTGTAAGGGCCTGGAGCTGGTCTTGGGGCCT +
Preference number: 3 (lower is better)
Translates to: ALTAAEWGCLCT*CCKGLELVLGP
Trigger: AGGCCCCAAGACCAGCTCCAGGCCCTTACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR GCA 72 bp CCAGGCCCTCTAGCCCAGCTCCCACTTCCTAGGATGTaGCAGTCCTGCTGGCATCAGGGCTGGCATGGTGGA +
Preference number: 3 (lower is better)
Translates to: PGPLAQLPLPRM*QSCWHQGWHGG
Trigger: TCCACCATGCCAGCCCTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAGAGGGCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTaGCATCAGGGCTGGCATGGTGGAGCCACACAGCTC +
Preference number: 3 (lower is better)
Translates to: AQLPLPRMCQSC*HQGWHGGATQL
Trigger: GAGCTGTGTGGCTCCACCATGCCAGCCCTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 72 bp CTAGCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTaGTGGCATCAGGGCTGGCATGGTGGAGCCACACAG +
Preference number: 3 (lower is better)
Translates to: LAQLPLPRMCQS*WHQGWHGGATQ
Trigger: CTGTGTGGCTCCACCATGCCAGCCCTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp CCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTaGGGCTGTCTTTGTACCTGGTGCTGTAAGGGCCTG +
Preference number: 3 (lower is better)
Translates to: PQFCLPALTAAE*GCLCTWCCKGL
Trigger: CAGGCCCTTACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR GCA 72 bp CTGGGGAGAGGTGGTTTAACCCAGGTTCCCAGGCTCTaGCCAGGGAACATGCAGAGGACAGAAGCGGGGCTT +
Preference number: 3 (lower is better)
Translates to: LGRGGLTQVPRL*PGNMQRTEAGL
Trigger: AAGCCCCGCTTCTGTCCTCTGCATGTTCCCTGGGCAGAGCCTGGGAACCTGGGTTAAACCACCTCTCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 72 bp GAGCCCTGCTCTGAGCAGTCTACAGACTGTCTCTGCTaGCCGGGCTCCTCACTTTCTCCTCTCTGGGTGTCC +
Preference number: 3 (lower is better)
Translates to: EPCSEQSTDCLC*PGSSLSPLWVS
Trigger: GGACACCCAGAGAGGAGAAAGTGAGGAGCCCGGCCAGCAGAGACAGTCTGTAGACTGCTCAGAGCAGGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CAA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGGCCTGGAGCTGGTCTaGGGGCCTTCAGAAGAGCAA +
Preference number: 3 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSGLELV*GPSEEQ
Trigger: TTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CAA 90 bp CTACAGACTGTCTCTGCTGGCCGGGCTCCTCACTTTCTCCTCTCTGGGTGTCCCACCACTCCCTGCCTTTaGGTTCACACCCAGGGTCTG +
Preference number: 3 (lower is better)
Translates to: LQTVSAGRAPHFLLSGCPTTPCL*VHTQGL
Trigger: CAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGT...GGGACACCCAGAGAGGAGAAAGTGAGGAGCCCGGCCAGCAGAGACAGTCTGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR TCA 72 bp CTGGAGTGTCGAAGAGAAGGCCTTTGTCCTCCCGGGTaGACCCACGGAAGGCAGCCCCAGTTCTGTCTACCA +
Preference number: 3 (lower is better)
Translates to: LECRREGLCPPG*THGRQPQFCLP
Trigger: TGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAGGACAAAGGCCTTCTCTTCGACACTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR TCA 72 bp AGCTGTCACTGTCTCGATGGAGGGATGGGTGGTGCCTaGGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGC +
Preference number: 3 (lower is better)
Translates to: SCHCLDGGMGGA*AQRGCPRGNRS
Trigger: GCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGTGACAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 72 bp CTCCTGACAGGTACAGCAGATGCCTGCCTTGGAGAGTaGCTCAGTGCTGTCCCTGGTGGCCACAGAAATGGG +
Preference number: 3 (lower is better)
Translates to: LLTGTADACLGE*LSAVPGGHRNG
Trigger: CCCATTTCTGTGGCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGTCAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GATGTGCCAGTCCTGCTGGCATCAGGGCTGGCATGGTaGAGCCACACAGCTCCCTCTGCCAAGACAAGAAAG +
Preference number: 3 (lower is better)
Translates to: DVPVLLASGLAW*SHTAPSAKTRK
Trigger: CTTTCTTGTCTTGGCAGAGGGAGCTGTGTGGCTCCACCATGCCAGCCCTGATGCCAGCAGGACTGGCACATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp AGATGCCTGCCTTGGAGAGTGCCTCAGTGCTGTCCCTaGTGGCCACAGAAATGGGACTTCCATGTGCCACCC +
Preference number: 3 (lower is better)
Translates to: RCLPWRVPQCCP*WPQKWDFHVPP
Trigger: GGGTGGCACATGGAAGTCCCATTTCTGTGGCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR-3UTR CAA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGGCCTGGAGCTGGTCTaGGGGCCTTCAGAAGAGCAA +
Preference number: 3 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLGLELV*GPSEEQ
Trigger: TTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCC...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR-3UTR CAA 90 bp CCACCAACAGTGCCTGGGCACACAACACATGACCTCCCTGCTAGAATATTCTCTGGACAGAAGCGGGGCTaGGCACTCAAGGCCGGAGAC +
Preference number: 3 (lower is better)
Translates to: PPTVPGHTTHDLPARIFSGQKRG*ALKAGD
Trigger: GTCTCCGGCCTTGAGTGCCAAGCCCCGCTTCTGTCC...AGAGAATATTCTAGCAGGGAGGTCATGTGTTGTGTGCCCAGGCACTGTTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR GCA 72 bp TTTGAGCCCTGCTCTGAGCAGTCTACAGACTGTCTCTaGTGGCCGGGCTCCTCACTTTCTCCTCTCTGGGTG +
Preference number: 3 (lower is better)
Translates to: FEPCSEQSTDCL*WPGSSLSPLWV
Trigger: CACCCAGAGAGGAGAAAGTGAGGAGCCCGGCCAGCAGAGACAGTCTGTAGACTGCTCAGAGCAGGGCTCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GCCCTTAGCGTCTTCAGAGCCTCTAGGTGGCCCTGTTaGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCT +
Preference number: 3 (lower is better)
Translates to: ALSVFRASRWPC*EQQEDMLSHQA
Trigger: AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAAGACGCTAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 72 bp TTTGTATGCCTGTGCACTGAGCCCACACAGTGCCCGTaGAGTCCACAAGAGGCTGTCAGAACCCCTGTGCCA +
Preference number: 3 (lower is better)
Translates to: FVCLCTEPTQCP*SPQEAVRTPVP
Trigger: TGGCACAGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCACAGGCATACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR TCA 72 bp CCAAAGGCAGCGAGCGATACAGATCTGCCTTTCTCCTaGCAGGTACAGCAGATGCCTGCCTTGGAGAGTGCC +
Preference number: 3 (lower is better)
Translates to: PKAASDTDLPFS*QVQQMPALESA
Trigger: GGCACTCTCCAAGGCAGGCATCTGCTGTACCTGTCAGGAGAAAGGCAGATCTGTATCGCTCGCTGCCTTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 72 bp AGGTACAGCAGATGCCTGCCTTGGAGAGTGCCTCAGTaGTGTCCCTGGTGGCCACAGAAATGGGACTTCCAT +
Preference number: 3 (lower is better)
Translates to: RYSRCLPWRVPQ*CPWWPQKWDFH
Trigger: ATGGAAGTCCCATTTCTGTGGCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTaGAGTGTCGAAGAGAAGGCCTTTGTCCTCCCGGGT +
Preference number: 3 (lower is better)
Translates to: AGTWMLLFLVLS*SVEEKAFVLPG
Trigger: ACCCGGGAGGACAAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 72 bp GCCAGTGTTGCCCTTAGCGTCTTCAGAGCCTCTAGGTaGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCT +
Preference number: 3 (lower is better)
Translates to: ASVALSVFRASR*PCWEQQEDMLS
Trigger: AGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAAGACGCTAAGGGCAACACTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 72 bp GCAGTGAAGACAGGATCTAGGCAGTGGTGGGCTGTATaGTGGGCACACGGGCGCATGCAGAGTGTTGTAGAA +
Preference number: 3 (lower is better)
Translates to: AVKTGSRQWWAV*WAHGRMQSVVE
Trigger: TTCTACAACACTCTGCATGCGCCCGTGTGCCCACCATACAGCCCACCACTGCCTAGATCCTGTCTTCACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GAAAGCAAGCTGTCACTGTCTCGATGGAGGGATGGGTaGTGCCTGAGCTCAAAGGGGGTGTCCCAGAGGAAA +
Preference number: 3 (lower is better)
Translates to: ESKLSLSRWRDG*CLSSKGVSQRK
Trigger: TTTCCTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGTGACAGCTTGCTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp TTGTGTTCAGGCCCTGGGTGCAGCAGAGAGGAACCCTaGGTTGTGCTAACAGAGGAAGCCGGACACAGACAA +
Preference number: 3 (lower is better)
Translates to: LCSGPGCSREEP*VVLTEEAGHRQ
Trigger: TTGTCTGTGTCCGGCTTCCTCTGTTAGCACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR TCA 72 bp GCAGACAGGGTTCTCGGGGGATCTGGGTTCAAATCCTaGCTACGCGCAACAGCTTGCTATATGGCCTTTGGC +
Preference number: 3 (lower is better)
Translates to: ADRVLGGSGFKS*LRATACYMAFG
Trigger: GCCAAAGGCCATATAGCAAGCTGTTGCGCGTAGTCAGGATTTGAACCCAGATCCCCCGAGAACCCTGTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 72 bp AGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTaGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGT +
Preference number: 3 (lower is better)
Translates to: RKTCFLTRLALV*TSRHLDASVPR
Trigger: ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 72 bp GTGAAGACAGGATCTAGGCAGTGGTGGGCTGTATGGTaGGCACACGGGCGCATGCAGAGTGTTGTAGAAACA +
Preference number: 3 (lower is better)
Translates to: VKTGSRQWWAVW*AHGRMQSVVET
Trigger: TGTTTCTACAACACTCTGCATGCGCCCGTGTGCCCACCATACAGCCCACCACTGCCTAGATCCTGTCTTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp ACAAAGATCTTTGCAGTGAAGACAGGATCTAGGCAGTaGTGGGCTGTATGGTGGGCACACGGGCGCATGCAG +
Preference number: 3 (lower is better)
Translates to: TKIFAVKTGSRQ*WAVWWAHGRMQ
Trigger: CTGCATGCGCCCGTGTGCCCACCATACAGCCCACCACTGCCTAGATCCTGTCTTCACTGCAAAGATCTTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 72 bp GCTGTCCCTGGTGGCCACAGAAATGGGACTTCCATGTaGCACCCTGAGCCCAAGGTCCTAACAGTTCATAAT +
Preference number: 3 (lower is better)
Translates to: AVPGGHRNGTSM*HPEPKVLTVHN
Trigger: ATTATGAACTGTTAGGACCTTGGGCTCAGGGTGGCACATGGAAGTCCCATTTCTGTGGCCACCAGGGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp TTTGTACCTGGTGCTGTAAGGGCCTGGAGCTGGTCTTaGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCC +
Preference number: 3 (lower is better)
Translates to: FVPGAVRAWSWS*GLQKSKTCVLS
Trigger: GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCTTACAGCACCAGGTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CCA 72 bp CAGGCAGCTCAGCCAGGAGTTGGTGTTTTGCAGTTTTaGAAGCATCTTAGGCCCTTGATGCTTCCAAGGGCC +
Preference number: 3 (lower is better)
Translates to: QAAQPGVGVLQF*KHLRPLMLPRA
Trigger: GGCCCTTGGAAGCATCAAGGGCCTAAGATGCTTCCAAAACTGCAAAACACCAACTCCTGGCTGAGCTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp CCTGCTAGAATATTCTCTGCGATTGTGTTCAGGCCCTaGGTGCAGCAGAGAGGAACCCTGGGTTGTGCTAAC +
Preference number: 3 (lower is better)
Translates to: PARIFSAIVFRP*VQQRGTLGCAN
Trigger: GTTAGCACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAATATTCTAGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR TCA 72 bp TCACACCCAGGGTCTGGGCCAGGCCCGACTCAGCTTTaGCCTAAAGTTTATGGAAACAGTGCCACAAGTAGA +
Preference number: 3 (lower is better)
Translates to: SHPGSGPGPTQL*PKVYGNSATSR
Trigger: TCTACTTGTGGCACTGTTTCCATAAACTTTAGGTCAAAGCTGAGTCGGGCCTGGCCCAGACCCTGGGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR GCA 72 bp GTGTGGTCCTGGGAACCAAGCTCGGGTCACCAGGCTTaGTTTATTCCCTCAGCCATTTTGCTGACCCATTTT +
Preference number: 3 (lower is better)
Translates to: VWSWEPSSGHQA*FIPSAILLTHF
Trigger: AAAATGGGTCAGCAAAATGGCTGAGGGAATAAAGCAAGCCTGGTGACCCGAGCTTGGTTCCCAGGACCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp CTGACTTCTGGGTTGGTGGGCACTGCTGAGCCTGCCTaGCCAGCGGAGTGTGGATTGTTTCAAGTTATTATA +
Preference number: 3 (lower is better)
Translates to: LTSGLVGTAEPA*PAECGLFQVII
Trigger: TATAATAACTTGAAACAATCCACACTCCGCTGGCCAGGCAGGCTCAGCAGTGCCCACCAACCCAGAAGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GGGAACTTGTTAGTTCTCCCTTCCGTAGTGTGGTCCTaGGAACCAAGCTCGGGTCACCAGGCTTGCTTTATT +
Preference number: 3 (lower is better)
Translates to: GNLLVLPSVVWS*EPSSGHQACFI
Trigger: AATAAAGCAAGCCTGGTGACCCGAGCTTGGTTCCCAGGACCACACTACGGAAGGGAGAACTAACAAGTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp GTCCTAACAGTTCATAATGTAAGCCTGAGCTGCAGCTaGACCTGTCTCTTTAAGAATCGCCCCCAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: VLTVHNVSLSCS*TCLFKNRPQQP
Trigger: TGGCTGCTGGGGGCGATTCTTAAAGAGACAGGTCCAGCTGCAGCTCAGGCTTACATTATGAACTGTTAGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR TCA 72 bp CACAAAACAAGAAATAGTTCACAGGCTGACGCAAGCTaGGTCCCACCAACAGTGCCTGGGCACACAACACAT +
Preference number: 3 (lower is better)
Translates to: HKTRNSSQADAS*VPPTVPGHTTH
Trigger: ATGTGTTGTGTGCCCAGGCACTGTTGGTGGGACTCAGCTTGCGTCAGCCTGTGAACTATTTCTTGTTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR GCA 72 bp CCACTCTGTACAGTGGTCACTGCTTCAGTCCTCGGGTaGAGGAGTAAGAACTTTTCACTGCATCTTTGGAAG +
Preference number: 3 (lower is better)
Translates to: PLCTVVTASVLG*RSKNFSLHLWK
Trigger: CTTCCAAAGATGCAGTGAAAAGTTCTTACTCCTGCACCCGAGGACTGAAGCAGTGACCACTGTACAGAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR GCA 72 bp AGGCTGGCCTTGAATTCACAGAGATCTGCCTACCTCTaGTTTCTAAGTGCTGGGGTTAAAGGTGTATGCCAC +
Preference number: 3 (lower is better)
Translates to: RLALNSQRSAYL*FLSAGVKGVCH
Trigger: GTGGCATACACCTTTAACCCCAGCACTTAGAAAGCAGAGGTAGGCAGATCTCTGTGAATTCAAGGCCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp AAGCTGAGTCCACAGTACCCAGTTCAAGGTCCAGCATaGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGT +
Preference number: 3 (lower is better)
Translates to: KLSPQYPVQGPA*SVFPEYILVQS
Trigger: ACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACTGTGGACTCAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR TCA 72 bp CCATGGTTGTATACACTTGTAATGTCCGCACTTTGGTaGTGCAGAGGCAGGAGATTGCCAGCTTGGGTTACA +
Preference number: 3 (lower is better)
Translates to: PWLYTLVMSALW*CRGRRLPAWVT
Trigger: TGTAACCCAAGCTGGCAATCTCCTGCCTCTGCATCACCAAAGTGCGGACATTACAAGTGTATACAACCATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR-3UTR CAA 90 bp CTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATGCCCAGCGGAGTGTGGATaGTTTCAAGTTATTATAGTT +
Preference number: 3 (lower is better)
Translates to: LAVAKADQCGYTELLPGCPAECG*FQVIIV
Trigger: AACTATAATAACTTGAAACAATCCACACTCCGCTGG...GCATCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR TCA 72 bp TACTGCTTCAGTGTCCAGAGTTTCCGTCTTGGAGGGTaGAAAGTTCTAGAAAGGGAGGTAGCAATGGTTCCA +
Preference number: 3 (lower is better)
Translates to: YCFSVQSFRLGG*KVLEREVAMVP
Trigger: TGGAACCATTGCTACCTCCCTTTCTAGAACTTTTCACCCTCCAAGACGGAAACTCTGGACACTGAAGCAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR GCA 72 bp CCCCAAACTGTCTTTGCTGTACTGCCGAGTACAACCTaGTCAGAATCCACAAGCATTCATGGAAATTCACAT +
Preference number: 3 (lower is better)
Translates to: PQTVFAVLPSTT*SESTSIHGNSH
Trigger: ATGTGAATTTCCATGAATGCTTGTGGATTCTGAGCAGGTTGTACTCGGCAGTACAGCAAAGACAGTTTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CCA 72 bp GTGAAGTTACTGCTTCAGTGTCCAGAGTTTCCGTCTTaGAGGGTGAAAAGTTCTAGAAAGGGAGGTAGCAAT +
Preference number: 3 (lower is better)
Translates to: VKLLLQCPEFPS*RVKSSRKGGSN
Trigger: ATTGCTACCTCCCTTTCTAGAACTTTTCACCCTCCAAGACGGAAACTCTGGACACTGAAGCAGTAACTTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR GCA 72 bp CTTCAGTCCTCGGGTGCAGGAGTAAGAACTTTTCACTaGATCTTTGGAAGCTACAAAGATCTTTGCAGTGAA +
Preference number: 3 (lower is better)
Translates to: LQSSGAGVRTFH*IFGSYKDLCSE
Trigger: TTCACTGCAAAGATCTTTGTAGCTTCCAAAGATGCAGTGAAAAGTTCTTACTCCTGCACCCGAGGACTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CCA 72 bp ATAGTGAGTGCCTTACCTAATCAGCTCATTAAAAGATaGCAGCCATCATCAACACAGAGTAATGAGAGACAT +
Preference number: 3 (lower is better)
Translates to: IVSALPNQLIKR*QPSSTQSNERH
Trigger: ATGTCTCTCATTACTCTGTGTTGATGATGGCTGCCATCTTTTAATGAGCTGATTAGGTAAGGCACTCACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR TCA 72 bp TCTAGAAAGGGAGGTAGCAATGGTTCCAGAACACTATaGGCATGCTCAATAGTAAATGTATGCTGCATATTT +
Preference number: 3 (lower is better)
Translates to: SRKGGSNGSRTL*ACSIVNVCCIF
Trigger: AAATATGCAGCATACATTTACTATTGAGCATGCTCATAGTGTTCTGGAACCATTGCTACCTCCCTTTCTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR TCA 90 bp GGCCCTCTAGCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTGGCATCAGGCCTTGCTCAGGCTCTaGGCCAGGCGGCCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: GPLAQLPLPRMCQSCWHQALLRL*ARRPRG
Trigger: GCCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGC...CTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAGAGGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGGGAGCCAGGCCGGTCTaGGGACTCGGGGAGACTGGG +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVGARPV*GLGETG
Trigger: CCCAGTCTCCCCGAGTCCCCAGACCGGCCTGGCTCC...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CAA 72 bp CCCGCCACAGCCCCGAAGCAGACCACTCCCTGCCTTTaGGTTCACACCCAGGGTCTGGGCCAGGCCCGACTC +
Preference number: 4 (lower is better)
Translates to: PATAPKQTTPCL*VHTQGLGQARL
Trigger: GAGTCGGGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGGGGCTGTGGCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTGCCTTGCTCAGGCTCTaGGCCAGGCGGCCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRALLRL*ARRPRG
Trigger: GCCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGC...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GGCCCTCTAGCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTGGCATCAGAGGCTGGAGGCCAGTTaGTGGGCACCGGCAGCCGTG +
Preference number: 4 (lower is better)
Translates to: GPLAQLPLPRMCQSCWHQRLEAS*WAPAAV
Trigger: CACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCT...CTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAGAGGGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGACTGTCCTGGCCCAGTaGCTCTTTCCCTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRTVLAQ*LFPWPA
Trigger: GGCTGGCCAGGGAAAGAGCCACTGGGCCAGGACAGT...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCCAGGGCCTTGTCTTaGTTCCCCGCTGTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRPRALS*FPAVPE
Trigger: CTCAGGGACAGCGGGGAACCAAGACAAGGCCCTGGG...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAGCCTTGCTCAGGCTCTaGGCCAGGCGGCCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKALLRL*ARRPRG
Trigger: GCCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGC...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCCTGGAGAAGGCCAGTTaGGCCTCCGTGGTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQALEKAS*ASVVSR
Trigger: CCTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAG...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCTCCAGGGCCTTCAGCTaGGGGAAGGTGGCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQASRAFS*GKVAES
Trigger: GCTCTCAGCCACCTTCCCTCAGCTGAAGGCCCTGGA...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACGAGAGTCACTGGGGAGAGGTGGTTTAACCCAGGTTCCCAGGCTCTGCCCAGGGGGACGCTCTTTGGCTaGACCAGGCGCGGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: TRVTGERWFNPGSQALPRGTLFG*TRRGCG
Trigger: GCCACAGCCGCGCCTGGTGCAGCCAAAGAGCGTCCC...CCTGGGCAGAGCCTGGGAACCTGGGTTAAACCACCTCTCCCCAGTGACTCTCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGGAGCCAGGCCGGTCTaGGGACTCGGGGAGACTGGG +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSGARPV*GLGETG
Trigger: CCCAGTCTCCCCGAGTCCCCAGACCGGCCTGGCTCC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCACCAGAGGACCCCTTaGGCTCTGGGGCAATGCCTT +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRHQRTP*ALGQCL
Trigger: AAGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTG...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGGTCATCCATGGCCAGTaGCTGCAGGCTCGGGGGACA +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVVIHGQ*LQARGT
Trigger: TGTCCCCCGAGCCTGCAGCCACTGGCCATGGATGAC...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGGGTTGCTGTGTCTCGTaGGCACAGTGGAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRGCCVS*AQWSSS
Trigger: GGAGCTGCTCCACTGTGCCCACGAGACACAGCAACC...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGCTGGAGGCCAGTTGCTaGGCACCGGCAGCCGTGAAC +
Preference number: 4 (lower is better)
Translates to: PELKGGVPEETGAAALVLLEASC*APAAVN
Trigger: GTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAG...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR TCA 90 bp TGCACTGAGCCCACACAGTGCCCGTGGAGTCCACAAGAGGCTGTCAGAACCCCTACACATCTGGGGGTGTaGGCCGGGTGCCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: CTEPTQCPWSPQEAVRTPTHLGV*AGCPGR
Trigger: CCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGT...AGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGTTCCCTGGCCAGCCTTaGCCAGCACAGCGACCACCT +
Preference number: 4 (lower is better)
Translates to: PELKGGVPEETGAAALVLFPGQP*PAQRPP
Trigger: AGGTGGTCGCTGTGCTGGGCAAGGCTGGCCAGGGAA...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGGCTGGCACACAGCCCTaGACACAACAGGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVAGTQP*TQQGCD
Trigger: GTCACAGCCCTGTTGTGTGCAGGGCTGTGTGCCAGC...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTAGGCTGGAGGCCAGTTaGTGGGCACCGGCAGCCGTG +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQARLEAS*WAPAAV
Trigger: CACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCT...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCAGGCTGGAGGCCAGTTaGTGGGCACCGGCAGCCGTG +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFRLEAS*WAPAAV
Trigger: CACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCT...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCGTCATCCATGGCCAGTaGCTGCAGGCTCGGGGGACA +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSVIHGQ*LQARGT
Trigger: TGTCCCCCGAGCCTGCAGCCACTGGCCATGGATGAC...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCCCCAGGGCCTTGTCTTaGTTCCCCGCTGTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSPRALS*FPAVPE
Trigger: CTCAGGGACAGCGGGGAACCAAGACAAGGCCCTGGG...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGGTTCTAGCAGGGCCTTaGAGAGCTGGCACACAGCCC +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVVLAGP*RAGTQP
Trigger: GGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAAC...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCGCTCCCAGGCCAGCTTaGCCAGCTCGACTAAGGCTC +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSAPRPA*PARLRL
Trigger: GAGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGC...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGGCCTTAGGAGGGACTTaGCTAGGGCTGGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRALGGT*LGLAEL
Trigger: AAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGC...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGCCTTGCTCAGGCTCTaGGCCAGGCGGCCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRALLRL*ARRPRG
Trigger: GCCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCACACATCTGGGGGTGTaGGCCGGGTGCCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSTHLGV*AGCPGR
Trigger: CCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGT...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCGCTGGGCAGGTCAGCTaGAGATGGTGTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSAGQVS*RWCEGA
Trigger: AGCCCCTTCACACCATCTGCAGCTGACCTGCCCAGC...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GGCCCTCTAGCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTGGCATCAGCCTGGCTCTTGTTGCTaGCTCTTTCCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: GPLAQLPLPRMCQSCWHQPGSCC*LFPAWP
Trigger: GGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGG...CTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAGAGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCGTAGCTGGGCCTCTGTaGCCTGTTCTAGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSVAGPL*PVLAGP
Trigger: AGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTAC...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCGCCACTGCAGCCACTaGAGGCTCCACCAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRRHCSH*RLHQSS
Trigger: GGAGCTCTGGTGGAGCCTGCAGTGGCTGCAGTGGCG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCTCCAGCAGCCTCCCTaGCCGGAGTGTCCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQALQQPP*PECPQL
Trigger: AAGCTGGGGACACTCCGGGCAGGGAGGCTGCTGGAG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCAGGAGGGCCCGCACCTaGCTGGGCTTCTGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSRRART*LGFWLE
Trigger: CTCCAGCCAGAAGCCCAGGCAGGTGCGGGCCCTCCT...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGCAGGTTCGGGCATGCTaGGCAGGTCAGCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: PELKGGVPEETGAAALVLQVRAC*AGQLQM
Trigger: CATCTGCAGCTGACCTGCCCAGCATGCCCGAACCTG...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGTGTGACTCACTGTCCTaGCCCAGTGGCTCTTTCCCT +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRCDSLS*PSGSFP
Trigger: AGGGAAAGAGCCACTGGGCCAGGACAGTGAGTCACA...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGAGGGAGCAGGGCTCTaGGGACAGAGATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCEGAGL*GQRSTG
Trigger: CCCTGTGGATCTCTGTCCCCAGAGCCCTGCTCCCTC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCTGCAGAGAAGAGGCTaGCCCTCCAGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRLQRRG*PSRRPR
Trigger: CCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGCTCCCAGGCCAGCTTaGCCAGCTCGACTAAGGCTC +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCAPRPA*PARLRL
Trigger: GAGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCAGAGCTCCCAGGCAGTaGGCTCGAGGCTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQARAPRQ*ARGWKT
Trigger: AGTTTTCCAGCCTCGAGCCCACTGCCTGGGAGCTCT...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGGGATCTTTGCCAGTGTaGGGAAAGCCTGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: PELKGGVPEETGAAALVLGSLPV*GKPGGP
Trigger: TGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCC...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCTGGAGGCCAGTTGCTaGGCACCGGCAGCCGTGAAC +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQALEASC*APAAVN
Trigger: GTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCTGGAGGCCAGTTGCTaGGCACCGGCAGCCGTGAAC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFLEASC*APAAVN
Trigger: GTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCGGGCCCGCACCTGCCTaGGCTTCTGGCTGGAGAGCA +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSGPAPA*ASGWRA
Trigger: TGCTCTCCAGCCAGAAGCCCAGGCAGGTGCGGGCCC...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR TCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCAGCTGCAGATGGTGTaGAGGGGCTGGTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFQLQMV*RGWWSQ
Trigger: CTGGCTCCACCAGCCCCTTCACACCATCTGCAGCTG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCAGCTGCAGATGGTGTaGAGGGGCTGGTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRQLQMV*RGWWSQ
Trigger: CTGGCTCCACCAGCCCCTTCACACCATCTGCAGCTG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCAGCTGCAGATGGTGTaGAGGGGCTGGTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAQLQMV*RGWWSQ
Trigger: CTGGCTCCACCAGCCCCTTCACACCATCTGCAGCTG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCTGGAGAAGGCCAGTTaGGCCTCCGTGGTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFLEKAS*ASVVSR
Trigger: CCTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTCCTGGCTCTTGTTGCTaGCTCTTTCCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCPGSCC*LFPAWP
Trigger: GGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGG...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGAGATGGCATCTGCCTTaGTCAGGCTCTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: PELKGGVPEETGAAALVLRWHLP*SGSEPG
Trigger: GCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCT...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCGCTGGCACACAGCCCTaGACACAACAGGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSAGTQP*TQQGCD
Trigger: GTCACAGCCCTGTTGTGTGCAGGGCTGTGTGCCAGC...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGCTCCAGCAGCCTCCCTaGCCGGAGTGTCCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLLQQPP*PECPQL
Trigger: AAGCTGGGGACACTCCGGGCAGGGAGGCTGCTGGAG...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACAGGCTGGAGGCCAGTTaGTGGGCACCGGCAGCCGTG +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHRLEAS*WAPAAV
Trigger: CACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCT...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCGGTCCCTGTAGCTGGTaGCCCTCTCTACCGTGGGAG +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFGPCSW*PSLPWE
Trigger: CTCCCACGGTAGAGAGGGGCACCAGCTACAGGGACC...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCCAGGTAGCTGCCCTCTaGAGATCCCAGATCCATGGT +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQAQVAAL*RSQIHG
Trigger: ACCATGGATCTGGGATCTCCAGAGGGCAGCTACCTG...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCTGTCCAGTCGGGAGTaGCCAGCTCCCTTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRLSSRE*PAPFPG
Trigger: GCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGTCATCCATGGCCAGTaGCTGCAGGCTCGGGGGACA +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAVIHGQ*LQARGT
Trigger: TGTCCCCCGAGCCTGCAGCCACTGGCCATGGATGAC...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGAGGGAGCAGGGCTCTaGGGACAGAGATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSEGAGL*GQRSTG
Trigger: CCCTGTGGATCTCTGTCCCCAGAGCCCTGCTCCCTC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCCTGCAGAGAAGAGGCTaGCCCTCCAGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSLQRRG*PSRRPR
Trigger: CCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAG...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGTCTTGCAAGGTGCTTTaGTGTCTTCGTCCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRSCKVL*CLRPSS
Trigger: GGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGA...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCGTCTCGTGGGCACAGTaGAGCAGCTCCAGCAGCCTC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFVSWAQ*SSSSSL
Trigger: GAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGAC...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTACAGACTGTCTCTGCTGGCCGGGCTCCTCACTTTCTCCTCTCTGGGTGTCCCGGTTGCTGTGTCTCGTaGGCACAGTGGAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LQTVSAGRAPHFLLSGCPGCCVS*AQWSSS
Trigger: GGAGCTGCTCCACTGTGCCCACGAGACACAGCAACC...GGGACACCCAGAGAGGAGAAAGTGAGGAGCCCGGCCAGCAGAGACAGTCTGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCGGTTGCTGTGTCTCGTaGGCACAGTGGAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSGCCVS*AQWSSS
Trigger: GGAGCTGCTCCACTGTGCCCACGAGACACAGCAACC...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGCACTGAGCCCACACAGTGCCCGTGGAGTCCACAAGAGGCTGTCAGAACCCCTTTCTCCTCTGCCGCCTaGAGTAGCTGGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: CTEPTQCPWSPQEAVRTPFSSAA*SSWASP
Trigger: GGGAGAAGCCCAGCTACTCCAGGCGGCAGAGGAGAA...AGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTTTCTCCTCTGCCGCCTaGAGTAGCTGGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCFSSAA*SSWASP
Trigger: GGGAGAAGCCCAGCTACTCCAGGCGGCAGAGGAGAA...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCGGATCTTTGCCAGTGTaGGGAAAGCCTGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSGSLPV*GKPGGP
Trigger: TGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCC...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGGCACTTCTGAAGGCTaGAGGCCAGTTGCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCGTSEG*RPVAGH
Trigger: GTGCCCAGCAACTGGCCTCCAGCCTTCAGAAGTGCC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCCTGGGGCAGAGTGGTaGAGATCTGGATGTGCCCAG +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFPGAEW*RSGCAQ
Trigger: CTGGGCACATCCAGATCTTCACCACTCTGCCCCAGG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCACCTGTGCCAGCCCCTaGGATTTGCCAGAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSTCASP*DLPESL
Trigger: CAGGGACTCTGGCAAATCTCAGGGGCTGGCACAGGT...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTACACATCTGGGGGTGTaGGCCGGGTGCCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVTHLGV*AGCPGR
Trigger: CCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGT...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCGCTTCTCCCTGCTGCTaGAGGGACTCCCATAATGCC +
Preference number: 4 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSASPCC*RDSHNA
Trigger: GGCATTATGGGAGTCCCTTCAGCAGCAGGGAGAAGC...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp ACTGTCTCGATGGAGGGATGGGTGGTGCCTGAGCTCAAAGGGGGTGTCCCAGAGCTGAGGGAAGGTGGCTaGGAGCTTCGACACACCCTT +
Preference number: 4 (lower is better)
Translates to: TVSMEGWVVPELKGGVPELREGG*ELRHTL
Trigger: AAGGGTGTGTCGAAGCTCTCAGCCACCTTCCCTCAG...CTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR TCA 90 bp GTCCGCACTTTGGTGATGCAGAGGCAGGAGATTGCCAGCTTGGGTTACAGAGAAGACCTTGAGTGGGTCTaGGGACCCCGTGGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: VRTLVMQRQEIASLGYREDLEWV*GPRGPG
Trigger: CCCAGGGCCACGGGGTCCTCAGACCCACTCAAGGTC...TTCTCTGTAACCCAAGCTGGCAATCTCCTGCCTCTGCATCACCAAAGTGCGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR GCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCCAGCCCCTGAGATTTaGCAGAGTCCCTGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAPAPEI*QSPWGR
Trigger: TCTGCCCCAGGGACTCTGGCAAATCTCAGGGGCTGG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGCTGGGCAGGTCAGCTaGAGATGGTGTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAAGQVS*RWCEGA
Trigger: AGCCCCTTCACACCATCTGCAGCTGACCTGCCCAGC...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGCTGGGCAGGTCAGCTaGAGATGGTGTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSAGQVS*RWCEGA
Trigger: AGCCCCTTCACACCATCTGCAGCTGACCTGCCCAGC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCCTGGCTCTTGTTGCTaGCTCTTTCCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRPGSCC*LFPAWP
Trigger: GGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCCTCAAAGATGGCATCTaGCTTGCTCAGGCTCTGAGC +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQALKDGI*LAQALS
Trigger: GCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAG...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGCGCCACTGCAGCCACTaGAGGCTCCACCAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVRHCSH*RLHQSS
Trigger: GGAGCTCTGGTGGAGCCTGCAGTGGCTGCAGTGGCG...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACTGTCTCGATGGAGGGATGGGTGGTGCCTGAGCTCAAAGGGGGTGTCCCAGAGTTTCCTATCCGCCACTaGAGCCACTGCAGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: TVSMEGWVVPELKGGVPEFPIRH*SHCRLH
Trigger: GTGGAGCCTGCAGTGGCTGCAGTGGCGGATAGGAAA...CTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTGGCTGGCAGAGCTTCTaGAAGCTTGCAGGCACCCAC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRGWQSF*KLAGTH
Trigger: GTGGGTGCCTGCAAGCTTGCAGAAGCTCTGCCAGCC...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGAGTGGGTGTCCACATTaGCAGTGTTTCCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVSGCPH*QCFHLR
Trigger: CCTCAGGTGGAAACACTGGCAATGTGGACACCCACT...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGATTTGCCAGAGTCCCTaGGGCAGAGTGGTGAAGATC +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVICQSP*GRVVKI
Trigger: GATCTTCACCACTCTGCCCCAGGGACTCTGGCAAAT...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGAGCCAGGCCGGTCTaGGGACTCGGGGAGACTGGG +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRREGARPV*GLGETG
Trigger: CCCAGTCTCCCCGAGTCCCCAGACCGGCCTGGCTCC...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCAGGTTCGGGCATGCTaGGCAGGTCAGCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFQVRAC*AGQLQM
Trigger: CATCTGCAGCTGACCTGCCCAGCATGCCCGAACCTG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGGGACCCTCTTGGCATaGGGAGGGAGATGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSGTLLA*GGRCVL
Trigger: GAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCACCAGAGGACCCCTTaGGCTCTGGGGCAATGCCTT +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRHQRTP*ALGQCL
Trigger: AAGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCCACCAGAGGACCCCTTaGGCTCTGGGGCAATGCCTT +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSHQRTP*ALGQCL
Trigger: AAGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTG...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCCTGTCCAGTCGGGAGTaGCCAGCTCCCTTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSLSSRE*PAPFPG
Trigger: GCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAG...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCACTGTCCTGGCCCAGTaGCTCTTTCCCTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSTVLAQ*LFPWPA
Trigger: GGCTGGCCAGGGAAAGAGCCACTGGGCCAGGACAGT...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGACTGTCCTGGCCCAGTaGCTCTTTCCCTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLTVLAQ*LFPWPA
Trigger: GGCTGGCCAGGGAAAGAGCCACTGGGCCAGGACAGT...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GGCCCTCTAGCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTGGCATCAGTGTGACTCACTGTCCTaGCCCAGTGGCTCTTTCCCT +
Preference number: 4 (lower is better)
Translates to: GPLAQLPLPRMCQSCWHQCDSLS*PSGSFP
Trigger: AGGGAAAGAGCCACTGGGCCAGGACAGTGAGTCACA...CTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAGAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp GGCTCAGTGATTGAGAGCACTTGCTGCCTTCTCAGGGGACCTGAGTTCTCTTCCCTGCAGAGAAGAGGCTaGCCCTCCAGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: GSVIESTCCLLRGPEFSSLQRRG*PSRRPR
Trigger: CCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAG...GGAAGAGAACTCAGGTCCCCTGAGAAGGCAGCAAGTGCTCTCAATCACTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCAGGGCCTTGGAGAGCTaGCACACAGCCCTGCACACA +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFRALES*HTALHT
Trigger: TGTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCT...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTAGGGCCTTGGAGAGCTaGCACACAGCCCTGCACACA +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRRALES*HTALHT
Trigger: TGTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCT...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCGTTCTAGCAGGGCCTTaGAGAGCTGGCACACAGCCC +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSVLAGP*RAGTQP
Trigger: GGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAAC...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGAGTGTACAAGGTAGCTaGGCCTCTGTGCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVSVQGS*ASVPCS
Trigger: AGAACAGGGCACAGAGGCCCAGCTACCTTGTACACT...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGTCTTGCAAGGTGCTTTaGTGTCTTCGTCCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVSCKVL*CLRPSS
Trigger: GGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGA...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCTGCTGCATCAAGCCTTaGGTCACTGCCCAGGTTTTC +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQACCIKP*VTAQVF
Trigger: GAAAACCTGGGCAGTGACCCAAGGCTTGATGCAGCA...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCAGCACATACACATCTaGGGGTGTGAGCCGGGTGCC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRQHIHI*GCEPGA
Trigger: GGCACCCGGCTCACACCCCCAGATGTGTATGTGCTG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCAGCACATACACATCTaGGGGTGTGAGCCGGGTGCC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFQHIHI*GCEPGA
Trigger: GGCACCCGGCTCACACCCCCAGATGTGTATGTGCTG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCAGCACATACACATCTaGGGGTGTGAGCCGGGTGCC +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAQHIHI*GCEPGA
Trigger: GGCACCCGGCTCACACCCCCAGATGTGTATGTGCTG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTTCTCCTCTGCCGCCTaGAGTAGCTGGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSFSSAA*SSWASP
Trigger: GGGAGAAGCCCAGCTACTCCAGGCGGCAGAGGAGAA...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTGTCTCGATGGAGGGATGGGTGGTGCCTGAGCTCAAAGGGGGTGTCCCAGAGGCCTTAGGAGGGACTTaGCTAGGGCTGGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: TVSMEGWVVPELKGGVPEALGGT*LGLAEL
Trigger: AAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGC...CTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCGGCACTTCTGAAGGCTaGAGGCCAGTTGCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFGTSEG*RPVAGH
Trigger: GTGCCCAGCAACTGGCCTCCAGCCTTCAGAAGTGCC...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCCATGGTCCCTGTAGCTaGTGCCCCTCTCTACCGTGG +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSHGPCS*CPSLPW
Trigger: CCACGGTAGAGAGGGGCACCAGCTACAGGGACCATG...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTGTGGCACACAGACTATaGTCGCGGCTGTGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRVAHRL*SRLWLC
Trigger: GCACAGCCACAGCCGCGACCATAGTCTGTGTGCCAC...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230146.2
CDS-3UTR TCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCTCCTGGAACACGTACTaGTCCAGTTCCGCAATGTTG +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQASWNTY*SSSAML
Trigger: CAACATTGCGGAACTGGATCAGTACGTGTTCCAGGA...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCACTGGAGAAGGCCAGTTaGGCCTCCGTGGTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSLEKAS*ASVVSR
Trigger: CCTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAG...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR TCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAACTGGAGAAGGCCAGTTaGGCCTCCGTGGTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKLEKAS*ASVVSR
Trigger: CCTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAG...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CTACAGACTGTCTCTGCTGGCCGGGCTCCTCACTTTCTCCTCTCTGGGTGTCCCCTTGGCTGCATCTTCTaGGGGGTTTCTCAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: LQTVSAGRAPHFLLSGCPLGCIF*GVSQPL
Trigger: CAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAG...GGGACACCCAGAGAGGAGAAAGTGAGGAGCCCGGCCAGCAGAGACAGTCTGTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR TCA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGCTTGTTCTCACTAAGTaGGTCCAGGTCCAGGTGTTG +
Preference number: 4 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVLVLTK*VQVQVL
Trigger: CAACACCTGGACCTGGACTCACTTAGTGAGAACAAG...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCTGAGGGAAGGTGGCTaGGAGCTTCGACACACCCTT +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFLREGG*ELRHTL
Trigger: AAGGGTGTGTCGAAGCTCTCAGCCACCTTCCCTCAG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTTCCAGGGCCTTCAGCTaGGGGAAGGTGGCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVSRAFS*GKVAES
Trigger: GCTCTCAGCCACCTTCCCTCAGCTGAAGGCCCTGGA...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACTCCAGGGCCTTCAGCTaGGGGAAGGTGGCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHSRAFS*GKVAES
Trigger: GCTCTCAGCCACCTTCCCTCAGCTGAAGGCCCTGGA...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAATCCAGGGCCTTCAGCTaGGGGAAGGTGGCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKSRAFS*GKVAES
Trigger: GCTCTCAGCCACCTTCCCTCAGCTGAAGGCCCTGGA...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCTGAGGCTTCTGTCCTaGTTCTACAGGGATCTCTAT +
Preference number: 4 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRLRLLS*FYRDLY
Trigger: ATAGAGATCCCTGTAGAAGCAGGACAGAAGCCTCAG...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCGCTGGGCAGGTCAGCTaGAGATGGTGTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSAGQVS*RWCEGA
Trigger: AGCCCCTTCACACCATCTGCAGCTGACCTGCCCAGC...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGCCTGGCTCTTGTTGCTaGCTCTTTCCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLPGSCC*LFPAWP
Trigger: GGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGG...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CCTGAGCTCAAAGGGGGTGTCCCAGAGGAAACAGGAGCAGCGGCACTGGTGCTGTTTCCTGGCTCTTGTTaGTGCCTCTTTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: PELKGGVPEETGAAALVLFPGSC*CLFPAW
Trigger: CCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAA...CAGCACCAGTGCCGCTGCTCCTGTTTCCTCTGGGACACCCCCTTTGAGCTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGTTCCCTGGCCAGCCTTaGCCAGCACAGCGACCACCT +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVFPGQP*PAQRPP
Trigger: AGGTGGTCGCTGTGCTGGGCAAGGCTGGCCAGGGAA...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACTTCCCTGGCCAGCCTTaGCCAGCACAGCGACCACCT +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHFPGQP*PAQRPP
Trigger: AGGTGGTCGCTGTGCTGGGCAAGGCTGGCCAGGGAA...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGAGATGGCATCTGCCTTaGTCAGGCTCTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: EPLGGPVGSSRKTCFLTRRWHLP*SGSEPG
Trigger: GCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCT...CCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGGCTGTGACTATAGCTaGAGAGAAGAGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCGCDYS*REEAGP
Trigger: AGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGCTGGCACACAGCCCTaGACACAACAGGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLAGTQP*TQQGCD
Trigger: GTCACAGCCCTGTTGTGTGCAGGGCTGTGTGCCAGC...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCGTAGCTGGGCCTCTGTaGCCTGTTCTAGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSVAGPL*PVLAGP
Trigger: AGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTAC...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCAGTGGGTGTCCACATTaGCAGTGTTTCCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSSGCPH*QCFHLR
Trigger: CCTCAGGTGGAAACACTGGCAATGTGGACACCCACT...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTCAGGTAGCTGCCCTCTaGAGATCCCAGATCCATGGT +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCQVAAL*RSQIHG
Trigger: ACCATGGATCTGGGATCTCCAGAGGGCAGCTACCTG...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCTCAGGCCCTCGAGCTaGGTATCCTGGAACACGTAC +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQALRPSS*VSWNTY
Trigger: GTACGTGTTCCAGGATACCCAGCTCGAGGGCCTGAG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTGGAGCCAGGCCGGTCTaGGGACTCGGGGAGACTGGG +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFGARPV*GLGETG
Trigger: CCCAGTCTCCCCGAGTCCCCAGACCGGCCTGGCTCC...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCAGGTCAGCTGCAGATaGTGTGAAGGGGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFQVSCR*CEGAGG
Trigger: TCCACCAGCCCCTTCACACCATCTGCAGCTGACCTG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACAGGTACAGCAGATGCCTGCCTTGGAGAGTGCCTCAGTGCTGTCCCTGGTGGCGGACCCCTTGGGCTCTaGGGCAATGCCTTGTATTTG +
Preference number: 4 (lower is better)
Translates to: TGTADACLGECLSAVPGGGPLGL*GNALYL
Trigger: CAAATACAAGGCATTGCCCCAGAGCCCAAGGGGTCC...GCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGGACCCCTTGGGCTCTaGGGCAATGCCTTGTATTTG +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCGPLGL*GNALYL
Trigger: CAAATACAAGGCATTGCCCCAGAGCCCAAGGGGTCC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGCTGTCCAGTCGGGAGTaGCCAGCTCCCTTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVLSSRE*PAPFPG
Trigger: GCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAG...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCCCAGGGCCTTGTCTTaGTTCCCCGCTGTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHPRALS*FPAVPE
Trigger: CTCAGGGACAGCGGGGAACCAAGACAAGGCCCTGGG...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTGTTCTAGCAGGGCCTTaGAGAGCTGGCACACAGCCC +
Preference number: 4 (lower is better)
Translates to: GPGAGLGAFRRARLVSFPVLAGP*RAGTQP
Trigger: GGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAAC...AGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTGCTGCATCAAGCCTTaGGTCACTGCCCAGGTTTTC +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSCCIKP*VTAQVF
Trigger: GAAAACCTGGGCAGTGACCCAAGGCTTGATGCAGCA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGAGAGCTCCCAGGCAGTaGGCTCGAGGCTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: EPLGGPVGSSRKTCFLTRRAPRQ*ARGWKT
Trigger: AGTTTTCCAGCCTCGAGCCCACTGCCTGGGAGCTCT...CCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTAGAGCTCCCAGGCAGTaGGCTCGAGGCTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRRAPRQ*ARGWKT
Trigger: AGTTTTCCAGCCTCGAGCCCACTGCCTGGGAGCTCT...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGGTCTCGTGGGCACAGTaGAGCAGCTCCAGCAGCCTC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVVSWAQ*SSSSSL
Trigger: GAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGAC...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTTCCAAGGAGAAGTCCTaGCTGGCTGTCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQASKEKS*LAVSKA
Trigger: GGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGA...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTGGCACTTCTGAAGGCTaGAGGCCAGTTGCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: GPGAGLGAFRRARLVSFPGTSEG*RPVAGH
Trigger: GTGCCCAGCAACTGGCCTCCAGCCTTCAGAAGTGCC...AGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTACCTGCCTGGGCTTCTaGCTGGAGAGCAGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRTCLGF*LESSVC
Trigger: ACAGACACTGCTCTCCAGCCAGAAGCCCAGGCAGGT...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp GTCCGCACTTTGGTGATGCAGAGGCAGGAGATTGCCAGCTTGGGTTACAGAGAAGGTCTGAGGACCCCGTaGCCCTGGGACCCGTCATCA +
Preference number: 4 (lower is better)
Translates to: VRTLVMQRQEIASLGYREGLRTP*PWDPSS
Trigger: TGATGACGGGTCCCAGGGCCACGGGGTCCTCAGACC...TTCTCTGTAACCCAAGCTGGCAATCTCCTGCCTCTGCATCACCAAAGTGCGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTACCTGTGCCAGCCCCTaGGATTTGCCAGAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVTCASP*DLPESL
Trigger: CAGGGACTCTGGCAAATCTCAGGGGCTGGCACAGGT...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCTTGGCTGCATCTTCTaGGGGGTTTCTCAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRLGCIF*GVSQPL
Trigger: CAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCTTGGCTGCATCTTCTaGGGGGTTTCTCAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQALGCIF*GVSQPL
Trigger: CAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTCCAGTTCCATGTCCTaGAACAGCTTGCTGAACTGG +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSSSSMS*NSLLNW
Trigger: CCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAACCAGCCCCTGAGATTTaGCAGAGTCCCTGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKPAPEI*QSPWGR
Trigger: TCTGCCCCAGGGACTCTGGCAAATCTCAGGGGCTGG...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCAGCCCCTGAGATTTaGCAGAGTCCCTGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVPAPEI*QSPWGR
Trigger: TCTGCCCCAGGGACTCTGGCAAATCTCAGGGGCTGG...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGGCTGGCACACAGCCCTaGACACAACAGGGCTGTGAC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVAGTQP*TQQGCD
Trigger: GTCACAGCCCTGTTGTGTGCAGGGCTGTGTGCCAGC...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGGTAGCTGGGCCTCTGTaGCCTGTTCTAGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVVAGPL*PVLAGP
Trigger: AGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTAC...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGTTTCCTATCCGCCACTaGAGCCACTGCAGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLFPIRH*SHCRLH
Trigger: GTGGAGCCTGCAGTGGCTGCAGTGGCGGATAGGAAA...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ATGGTGGGCACACGGGCGCATGCAGAGTGTTGTAGAAACAATACTGTGTGGCTTCTCCAGCAGCCTCCCTaGCCGGAGTGTCCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: MVGTRAHAECCRNNTVWLLQQPP*PECPQL
Trigger: AAGCTGGGGACACTCCGGGCAGGGAGGCTGCTGGAG...AAGCCACACAGTATTGTTTCTACAACACTCTGCATGCGCCCGTGTGCCCACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGCTCCAGCAGCCTCCCTaGCCGGAGTGTCCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRLQQPP*PECPQL
Trigger: AAGCTGGGGACACTCCGGGCAGGGAGGCTGCTGGAG...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACTGTCTCGATGGAGGGATGGGTGGTGCCTGAGCTCAAAGGGGGTGTCCCAGAGAGTGGGTGTCCACATTaGCAGTGTTTCCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: TVSMEGWVVPELKGGVPESGCPH*QCFHLR
Trigger: CCTCAGGTGGAAACACTGGCAATGTGGACACCCACT...CTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGCTCAGGCCCTCGAGCTaGGTATCCTGGAACACGTAC +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLLRPSS*VSWNTY
Trigger: GTACGTGTTCCAGGATACCCAGCTCGAGGGCCTGAG...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTATTTGCCAGAGTCCCTaGGGCAGAGTGGTGAAGATC +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCICQSP*GRVVKI
Trigger: GATCTTCACCACTCTGCCCCAGGGACTCTGGCAAAT...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCCAGGTCAGCTGCAGATaGTGTGAAGGGGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSQVSCR*CEGAGG
Trigger: TCCACCAGCCCCTTCACACCATCTGCAGCTGACCTG...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAACAGGTTCGGGCATGCTaGGCAGGTCAGCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKQVRAC*AGQLQM
Trigger: CATCTGCAGCTGACCTGCCCAGCATGCCCGAACCTG...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGGGACCCTCTTGGCATaGGGAGGGAGATGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVGTLLA*GGRCVL
Trigger: GAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACGGGACCCTCTTGGCATaGGGAGGGAGATGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHGTLLA*GGRCVL
Trigger: GAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCC...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTGTGACTCACTGTCCTaGCCCAGTGGCTCTTTCCCT +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSCDSLS*PSGSFP
Trigger: AGGGAAAGAGCCACTGGGCCAGGACAGTGAGTCACA...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTGCAGGAGGCCATCTTaGGCCTCTAGCTCCTCGAAA +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRCRRPS*ASSSSK
Trigger: TTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCA...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTTGCAGGAGGCCATCTTaGGCCTCTAGCTCCTCGAAA +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQACRRPS*ASSSSK
Trigger: TTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCA...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGGAGGGAGCAGGGCTCTaGGGACAGAGATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: QALGCFCSSFCPGVSKRREGAGL*GQRSTG
Trigger: CCCTGTGGATCTCTGTCCCCAGAGCCCTGCTCCCTC...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAACTGCAGAGAAGAGGCTaGCCCTCCAGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRRELQRRG*PSRRPR
Trigger: CCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAG...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGTTCTAGCAGGGCCTTaGAGAGCTGGCACACAGCCC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVVLAGP*RAGTQP
Trigger: GGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAAC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTTCCAGCCAGAAAGCGTaGTACACCCTCCAGCCAGTT +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQASSQKA*YTLQPV
Trigger: AACTGGCTGGAGGGTGTACCACGCTTTCTGGCTGGA...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTCCAGCCAGAAAGCGTaGTACACCCTCCAGCCAGTT +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFSSQKA*YTLQPV
Trigger: AACTGGCTGGAGGGTGTACCACGCTTTCTGGCTGGA...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGGGTTGCTGTGTCTCGTaGGCACAGTGGAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVGCCVS*AQWSSS
Trigger: GGAGCTGCTCCACTGTGCCCACGAGACACAGCAACC...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCCAAGGAGAAGTCCTaGCTGGCTGTCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSSKEKS*LAVSKA
Trigger: GGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGA...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTCAGCTGAGGGAAGGTaGCTGAGAGCTTCGACACAC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFSAEGR*LRASTH
Trigger: GTGTGTCGAAGCTCTCAGCCACCTTCCCTCAGCTGA...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CAA 72 bp CTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTaGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGT +
Preference number: 4 (lower is better)
Translates to: LTRLALVWTSRH*DASVPRSVLEC
Trigger: ACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCGATACTGAGGCTGCTTaGAGGGAGCACTTGGTTGAC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFDTEAA*REHLVD
Trigger: GTCAACCAAGTGCTCCCTTCAAGCAGCCTCAGTATC...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTACACATCTGGGGGTGTaGGCCGGGTGCCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFTHLGV*AGCPGR
Trigger: CCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGCTTCTCCCTGCTGCTaGAGGGACTCCCATAATGCC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVASPCC*RDSHNA
Trigger: GGCATTATGGGAGTCCCTTCAGCAGCAGGGAGAAGC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGCTGAGGGAAGGTGGCTaGGAGCTTCGACACACCCTT +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVLREGG*ELRHTL
Trigger: AAGGGTGTGTCGAAGCTCTCAGCCACCTTCCCTCAG...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGTTCCCTGGCCAGCCTTaGCCAGCACAGCGACCACCT +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRFPGQP*PAQRPP
Trigger: AGGTGGTCGCTGTGCTGGGCAAGGCTGGCCAGGGAA...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAAGATGGCATCTGCCTTaGTCAGGCTCTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKRWHLP*SGSEPG
Trigger: GCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCT...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCTCAAAGATGGCATCTaGCTTGCTCAGGCTCTGAGC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRLKDGI*LAQALS
Trigger: GCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCTCAAAGATGGCATCTaGCTTGCTCAGGCTCTGAGC +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFLKDGI*LAQALS
Trigger: GCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACGCCACTGCAGCCACTaGAGGCTCCACCAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPRHCSH*RLHQSS
Trigger: GGAGCTCTGGTGGAGCCTGCAGTGGCTGCAGTGGCG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCCGCCACTGCAGCCACTaGAGGCTCCACCAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSRHCSH*RLHQSS
Trigger: GGAGCTCTGGTGGAGCCTGCAGTGGCTGCAGTGGCG...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGCAGGTAGCTGCCCTCTaGAGATCCCAGATCCATGGT +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLQVAAL*RSQIHG
Trigger: ACCATGGATCTGGGATCTCCAGAGGGCAGCTACCTG...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCTCAGGCCCTCGAGCTaGGTATCCTGGAACACGTAC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVLRPSS*VSWNTY
Trigger: GTACGTGTTCCAGGATACCCAGCTCGAGGGCCTGAG...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGCTCAGGCCCTCGAGCTaGGTATCCTGGAACACGTAC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVLRPSS*VSWNTY
Trigger: GTACGTGTTCCAGGATACCCAGCTCGAGGGCCTGAG...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGAGAGTGGTGAAGATCTaGATGTGCCCAGTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: EPLGGPVGSSRKTCFLTRRVVKI*MCPVGR
Trigger: TCTCCCCACTGGGCACATCCAGATCTTCACCACTCT...CCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCGGTAGATTAGGACACTaGAGAGACCTGTGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSGRLGH*RDLCQP
Trigger: GGGCTGGCACAGGTCTCTCCAGTGTCCTAATCTACC...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCAGGTCAGCTGCAGATaGTGTGAAGGGGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVQVSCR*CEGAGG
Trigger: TCCACCAGCCCCTTCACACCATCTGCAGCTGACCTG...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCAGGTTCGGGCATGCTaGGCAGGTCAGCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRQVRAC*AGQLQM
Trigger: CATCTGCAGCTGACCTGCCCAGCATGCCCGAACCTG...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTTCGCTCCACAGCCTCTaGCCATTTTGGAAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCSLHSL*PFWKLD
Trigger: ATCAAGCTTCCAAAATGGCCAGAGGCTGTGGAGCGA...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGACTGTCCTGGCCCAGTaGCTCTTTCCCTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRTVLAQ*LFPWPA
Trigger: GGCTGGCCAGGGAAAGAGCCACTGGGCCAGGACAGT...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTGCAGGAGGCCATCTTaGGCCTCTAGCTCCTCGAAA +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSCRRPS*ASSSSK
Trigger: TTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCA...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGAGGGAGCAGGGCTCTaGGGACAGAGATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSREGAGL*GQRSTG
Trigger: CCCTGTGGATCTCTGTCCCCAGAGCCCTGCTCCCTC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGCCCAGGGCCTTGTCTTaGTTCCCCGCTGTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRPRALS*FPAVPE
Trigger: CTCAGGGACAGCGGGGAACCAAGACAAGGCCCTGGG...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTAGTGTACAAGGTAGCTaGGCCTCTGTGCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQASVQGS*ASVPCS
Trigger: AGAACAGGGCACAGAGGCCCAGCTACCTTGTACACT...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTAGTGTACAAGGTAGCTaGGCCTCTGTGCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRSVQGS*ASVPCS
Trigger: AGAACAGGGCACAGAGGCCCAGCTACCTTGTACACT...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGCTCCCAGGCCAGCTTaGCCAGCTCGACTAAGGCTC +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRAPRPA*PARLRL
Trigger: GAGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTTGCAAGGTGCTTTaGTGTCTTCGTCCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRSCKVL*CLRPSS
Trigger: GGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGA...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTCAAGGCCAGGTACTGTaGCAGCTCCTTGTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCQGQVL*QLLVFD
Trigger: ATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTG...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGAGAGCTCCCAGGCAGTaGGCTCGAGGCTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVRAPRQ*ARGWKT
Trigger: AGTTTTCCAGCCTCGAGCCCACTGCCTGGGAGCTCT...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGTCTCGTGGGCACAGTaGAGCAGCTCCAGCAGCCTC +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRVSWAQ*SSSSSL
Trigger: GAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGAC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGTCTCGTGGGCACAGTaGAGCAGCTCCAGCAGCCTC +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRVSWAQ*SSSSSL
Trigger: GAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGAC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGTCCAAGGAGAAGTCCTaGCTGGCTGTCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVSKEKS*LAVSKA
Trigger: GGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGA...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAATCCAAGGAGAAGTCCTaGCTGGCTGTCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKSKEKS*LAVSKA
Trigger: GGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGA...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGTTCTCCTCTGCCGCCTaGAGTAGCTGGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRFSSAA*SSWASP
Trigger: GGGAGAAGCCCAGCTACTCCAGGCGGCAGAGGAGAA...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGCCTTAGGAGGGACTTaGCTAGGGCTGGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVALGGT*LGLAEL
Trigger: AAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAGCCTTAGGAGGGACTTaGCTAGGGCTGGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKALGGT*LGLAEL
Trigger: AAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGC...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTCTGGAGGCCAGTTGCTaGGCACCGGCAGCCGTGAAC +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFLEASC*APAAVN
Trigger: GTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAG...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTCTCTGCGATTGTGTTCAGGCCCTGGGTGCAGCAGAGAGGAACCCTGGGTTGTCAAAGCGTGGGCTACTaGAAGCTCCTGCTCGGTCAT +
Preference number: 4 (lower is better)
Translates to: FSAIVFRPWVQQRGTLGCQSVGY*KLLLGH
Trigger: ATGACCGAGCAGGAGCTTCCAGTAGCCCACGCTTTG...ACAACCCAGGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR TCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTTCCTGGAACACGTACTaGTCCAGTTCCGCAATGTTG +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQASWNTY*SSSAML
Trigger: CAACATTGCGGAACTGGATCAGTACGTGTTCCAGGA...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGACCTGTGCCAGCCCCTaGGATTTGCCAGAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRTCASP*DLPESL
Trigger: CAGGGACTCTGGCAAATCTCAGGGGCTGGCACAGGT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAACCTGTGCCAGCCCCTaGGATTTGCCAGAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRRETCASP*DLPESL
Trigger: CAGGGACTCTGGCAAATCTCAGGGGCTGGCACAGGT...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCCAGCTGCAGATGGTGTaGAGGGGCTGGTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSQLQMV*RGWWSQ
Trigger: CTGGCTCCACCAGCCCCTTCACACCATCTGCAGCTG...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TGCACTGAGCCCACACAGTGCCCGTGGAGTCCACAAGAGGCTGTCAGAACCCCTGCAGCTCCTTGTCTTTaGTTTCATTGCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: CTEPTQCPWSPQEAVRTPAAPCL*FHCTVP
Trigger: TGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGC...AGGGGTTCTGACAGCCTCTTGTGGACTCCACGGGCACTGTGTGGGCTCAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCCAGTTCCATGTCCTaGAACAGCTTGCTGAACTGG +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSSSSMS*NSLLNW
Trigger: CCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGA...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGCCAGCCCCTGAGATTTaGCAGAGTCCCTGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRPAPEI*QSPWGR
Trigger: TCTGCCCCAGGGACTCTGGCAAATCTCAGGGGCTGG...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACGGCTGTGACTATAGCTaGAGAGAAGAGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHGCDYS*REEAGP
Trigger: AGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCC...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGGCTGGCAGAGCTTCTaGAAGCTTGCAGGCACCCAC +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRGWQSF*KLAGTH
Trigger: GTGGGTGCCTGCAAGCTTGCAGAAGCTCTGCCAGCC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTAGAGTGGTGAAGATCTaGATGTGCCCAGTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: GPGAGLGAFRRARLVSFPRVVKI*MCPVGR
Trigger: TCTCCCCACTGGGCACATCCAGATCTTCACCACTCT...AGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAACACCAGAGGACCCCTTaGGCTCTGGGGCAATGCCTT +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRREHQRTP*ALGQCL
Trigger: AAGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTG...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGAGGGCCTTGGAGAGCTaGCACACAGCCCTGCACACA +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRRALES*HTALHT
Trigger: TGTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTCAAGGCCAGGTACTGTaGCAGCTCCTTGTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAQGQVL*QLLVFD
Trigger: ATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTG...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCCAAGGCCAGGTACTGTaGCAGCTCCTTGTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSQGQVL*QLLVFD
Trigger: ATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTG...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCATCCAGCCAGAAAGCGTaGTACACCCTCCAGCCAGTT +
Preference number: 4 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSSSQKA*YTLQPV
Trigger: AACTGGCTGGAGGGTGTACCACGCTTTCTGGCTGGA...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGCAGCACATACACATCTaGGGGTGTGAGCCGGGTGCC +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRQHIHI*GCEPGA
Trigger: GGCACCCGGCTCACACCCCCAGATGTGTATGTGCTG...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGGATCTTTGCCAGTGTaGGGAAAGCCTGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRGSLPV*GKPGGP
Trigger: TGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACTCAGCTGAGGGAAGGTaGCTGAGAGCTTCGACACAC +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHSAEGR*LRASTH
Trigger: GTGTGTCGAAGCTCTCAGCCACCTTCCCTCAGCTGA...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTCAGTGATGTTGTTTTaGGACAAGTTGAGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSSVMLF*DKLSVS
Trigger: GGAGACGCTCAACTTGTCCCAAAACAACATCACTGA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCACTTCTGAAGGCTaGAGGCCAGTTGCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRREGTSEG*RPVAGH
Trigger: GTGCCCAGCAACTGGCCTCCAGCCTTCAGAAGTGCC...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACGCCTGGGCTTCTGGCTaGAGAGCAGTGTCTGTACTT +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHAWASG*RAVSVL
Trigger: AAGTACAGACACTGCTCTCCAGCCAGAAGCCCAGGC...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR TCA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTGCAGCTCCTTGTCTTTaGTTTCATTGCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: TRLALVWTSRHLDASVPRAAPCL*FHCTVP
Trigger: TGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGC...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGCTTGTTCTCACTAAGTaGGTCCAGGTCCAGGTGTTG +
Preference number: 4 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLLVLTK*VQVQVL
Trigger: CAACACCTGGACCTGGACTCACTTAGTGAGAACAAG...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTACAGTGGTATTCCCGTaGGAGCAGCTCTTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVTVVFP*EQLFFQ
Trigger: CTGGAAGAAGAGCTGCTCTCACGGGAATACCACTGT...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR GCA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCACCAAAGCCTTCCTCTaGTCCAATGTGCTCTATGAA +
Preference number: 4 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSTKAFL*SNVLYE
Trigger: TTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGT...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGAGGCTTCTGTCCTaGTTCTACAGGGATCTCTAT +
Preference number: 4 (lower is better)
Translates to: EPLGGPVGSSRKTCFLTRLRLLS*FYRDLY
Trigger: ATAGAGATCCCTGTAGAAGCAGGACAGAAGCCTCAG...CCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGTTTCCTGGCTCTTGTTaGTGCCTCTTTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVFPGSC*CLFPAW
Trigger: CCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAA...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTTTTCCTGGCTCTTGTTaGTGCCTCTTTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVFPGSC*CLFPAW
Trigger: CCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAA...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGTAGCTGGGCCTCTGTaGCCTGTTCTAGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPVAGPL*PVLAGP
Trigger: AGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTAC...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGGCTGGCAGAGCTTCTaGAAGCTTGCAGGCACCCAC +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPGWQSF*KLAGTH
Trigger: GTGGGTGCCTGCAAGCTTGCAGAAGCTCTGCCAGCC...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCGGCTGGCAGAGCTTCTaGAAGCTTGCAGGCACCCAC +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSGWQSF*KLAGTH
Trigger: GTGGGTGCCTGCAAGCTTGCAGAAGCTCTGCCAGCC...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCCTCCTTTGTCACAGATaGAGTTATTGTACAAGCTCA +
Preference number: 4 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQALLCHR*SYCTSS
Trigger: TGAGCTTGTACAATAACTGCATCTGTGACAAAGGAG...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAAGTGGGTGTCCACATTaGCAGTGTTTCCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKSGCPH*QCFHLR
Trigger: CCTCAGGTGGAAACACTGGCAATGTGGACACCCACT...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CACAAGCATTCATGGAAATTCACATCAGCTACCCAGGCAGCAGACAGGGTTCTCGCTACTGGAAGCTCCTaGTCGGTCATCTCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: HKHSWKFTSATQAADRVLATGSS*SVISGG
Trigger: GCCCCCAGAGATGACCGAGCAGGAGCTTCCAGTAGC...GAGAACCCTGTCTGCTGCCTGGGTAGCTGATGTGAATTTCCATGAATGCTTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGAGAGTGGTGAAGATCTaGATGTGCCCAGTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVRVVKI*MCPVGR
Trigger: TCTCCCCACTGGGCACATCCAGATCTTCACCACTCT...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGATTTGCCAGAGTCCCTaGGGCAGAGTGGTGAAGATC +
Preference number: 4 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVICQSP*GRVVKI
Trigger: GATCTTCACCACTCTGCCCCAGGGACTCTGGCAAAT...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTGGGACCCTCTTGGCATaGGGAGGGAGATGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFGTLLA*GGRCVL
Trigger: GAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCC...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGTGCAGGAGGCCATCTTaGGCCTCTAGCTCCTCGAAA +
Preference number: 4 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRCRRPS*ASSSSK
Trigger: TTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCA...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGGGCCTTGGAGAGCTaGCACACAGCCCTGCACACA +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSRALES*HTALHT
Trigger: TGTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCT...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAATCTTGCAAGGTGCTTTaGTGTCTTCGTCCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKSCKVL*CLRPSS
Trigger: GGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGA...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GGCTCAGTGATTGAGAGCACTTGCTGCCTTCTCAGGGGACCTGAGTTCTCTTCCTGCTGCATCAAGCCTTaGGTCACTGCCCAGGTTTTC +
Preference number: 4 (lower is better)
Translates to: GSVIESTCCLLRGPEFSSCCIKP*VTAQVF
Trigger: GAAAACCTGGGCAGTGACCCAAGGCTTGATGCAGCA...GGAAGAGAACTCAGGTCCCCTGAGAAGGCAGCAAGTGCTCTCAATCACTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTTGCTGCATCAAGCCTTaGGTCACTGCCCAGGTTTTC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVCCIKP*VTAQVF
Trigger: GAAAACCTGGGCAGTGACCCAAGGCTTGATGCAGCA...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCGTCTTCCACATCCTTTaGGGATTTGGCTTTAAATGG +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSVFHIL*GFGFKW
Trigger: CCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGAC...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGGATCTTTGCCAGTGTaGGGAAAGCCTGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPGSLPV*GKPGGP
Trigger: TGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCC...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTGTCTCGATGGAGGGATGGGTGGTGCCTGAGCTCAAAGGGGGTGTCCCAGAGTCAGTGATGTTGTTTTaGGACAAGTTGAGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: TVSMEGWVVPELKGGVPESVMLF*DKLSVS
Trigger: GGAGACGCTCAACTTGTCCCAAAACAACATCACTGA...CTCTGGGACACCCCCTTTGAGCTCAGGCACCACCCATCCCTCCATCGAGACAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 72 bp CAACACATGACCTCCCTGCTAGAATATTCTCTGCGATaGTGTTCAGGCCCTGGGTGCAGCAGAGAGGAACCC +
Preference number: 4 (lower is better)
Translates to: QHMTSLLEYSLR*CSGPGCSREEP
Trigger: GGGTTCCTCTCTGCTGCACCCAGGGCCTGAACACAATCGCAGAGAATATTCTAGCAGGGAGGTCATGTGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR TCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACTCCTGGAACACGTACTaGTCCAGTTCCGCAATGTTG +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHSWNTY*SSSAML
Trigger: CAACATTGCGGAACTGGATCAGTACGTGTTCCAGGA...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCGCTTCTCCCTGCTGCTaGAGGGACTCCCATAATGCC +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSASPCC*RDSHNA
Trigger: GGCATTATGGGAGTCCCTTCAGCAGCAGGGAGAAGC...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACTGAGGGAAGGTGGCTaGGAGCTTCGACACACCCTT +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPLREGG*ELRHTL
Trigger: AAGGGTGTGTCGAAGCTCTCAGCCACCTTCCCTCAG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACTCCAGTTCCATGTCCTaGAACAGCTTGCTGAACTGG +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHSSSMS*NSLLNW
Trigger: CCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGA...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAAGATGGCATCTGCCTTaGTCAGGCTCTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPRWHLP*SGSEPG
Trigger: GCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCT...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGGCTGTGACTATAGCTaGAGAGAAGAGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRGCDYS*REEAGP
Trigger: AGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTTTTCCTATCCGCCACTaGAGCCACTGCAGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFFPIRH*SHCRLH
Trigger: GTGGAGCCTGCAGTGGCTGCAGTGGCGGATAGGAAA...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGGTAGATTAGGACACTaGAGAGACCTGTGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRGRLGH*RDLCQP
Trigger: GGGCTGGCACAGGTCTCTCCAGTGTCCTAATCTACC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGGTAGATTAGGACACTaGAGAGACCTGTGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRGRLGH*RDLCQP
Trigger: GGGCTGGCACAGGTCTCTCCAGTGTCCTAATCTACC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACAGGTCAGCTGCAGATaGTGTGAAGGGGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPQVSCR*CEGAGG
Trigger: TCCACCAGCCCCTTCACACCATCTGCAGCTGACCTG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCATCGCTCCACAGCCTCTaGCCATTTTGGAAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSSLHSL*PFWKLD
Trigger: ATCAAGCTTCCAAAATGGCCAGAGGCTGTGGAGCGA...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGGACCCCTTGGGCTCTaGGGCAATGCCTTGTATTTG +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRGPLGL*GNALYL
Trigger: CAAATACAAGGCATTGCCCCAGAGCCCAAGGGGTCC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGACCCCTTGGGCTCTaGGGCAATGCCTTGTATTTG +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRREGPLGL*GNALYL
Trigger: CAAATACAAGGCATTGCCCCAGAGCCCAAGGGGTCC...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CCCAGGAGAGAAGATACTGTGACTCTGCCCATTTTACAGATAAGGAAGCTAAGGCTGTCCAGTCGGGAGTaGCCAGCTCCCTTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: PRREDTVTLPILQIRKLRLSSRE*PAPFPG
Trigger: GCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAG...CCTTAGCTTCCTTATCTGTAAAATGGGCAGAGTCACAGTATCTTCTCTCCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGTGTGACTCACTGTCCTaGCCCAGTGGCTCTTTCCCT +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRCDSLS*PSGSFP
Trigger: AGGGAAAGAGCCACTGGGCCAGGACAGTGAGTCACA...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCGGATTTGGCTTTAAATaGCTCAATGGTGAACTTCTC +
Preference number: 4 (lower is better)
Translates to: REGEARRTPRHSPEADHSGFGFK*LNGELL
Trigger: GAGAAGTTCACCATTGAGCCATTTAAAGCCAAATCC...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CAA 72 bp CGCACTTTGGTGATGCAGAGGCAGGAGATTGCCAGCTaGGGTTACAGAGAACCTGATACCCCAAGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: RTLVMQRQEIAS*GYREPDTPRSQ
Trigger: TTGAGACCTTGGGGTATCAGGTTCTCTGTAACCCAAGCTGGCAATCTCCTGCCTCTGCATCACCAAAGTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS-3UTR TCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAGCAGCTCCTTGTCTTTaGTTTCATTGCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKAAPCL*FHCTVP
Trigger: TGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGC...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGTTTCCTGGCTCTTGTTaGTGCCTCTTTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRFPGSC*CLFPAW
Trigger: CCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAA...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAACTCAAAGATGGCATCTaGCTTGCTCAGGCTCTGAGC +
Preference number: 4 (lower is better)
Translates to: SRHLDASVPRSVLECRRELKDGI*LAQALS
Trigger: GCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAG...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCGGCTGTGACTATAGCTaGAGAGAAGAGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSGCDYS*REEAGP
Trigger: AGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCC...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ATGGTGGGCACACGGGCGCATGCAGAGTGTTGTAGAAACAATACTGTGTGGCTTAGTGTACAAGGTAGCTaGGCCTCTGTGCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: MVGTRAHAECCRNNTVWLSVQGS*ASVPCS
Trigger: AGAACAGGGCACAGAGGCCCAGCTACCTTGTACACT...AAGCCACACAGTATTGTTTCTACAACACTCTGCATGCGCCCGTGTGCCCACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACACTGTAGCAGAAAACTaGAGAAGGCCAGTTGAGCCT +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHTVAEN*RRPVEP
Trigger: AGGCTCAACTGGCCTTCTCCAGTTTTCTGCTACAGT...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCATCAGCTGAGGGAAGGTaGCTGAGAGCTTCGACACAC +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPSAEGR*LRASTH
Trigger: GTGTGTCGAAGCTCTCAGCCACCTTCCCTCAGCTGA...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCTCAGCTGAGGGAAGGTaGCTGAGAGCTTCGACACAC +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSSAEGR*LRASTH
Trigger: GTGTGTCGAAGCTCTCAGCCACCTTCCCTCAGCTGA...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGTCCTGGAACACGTACTaGTCCAGTTCCGCAATGTTG +
Preference number: 4 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRSWNTY*SSSAML
Trigger: CAACATTGCGGAACTGGATCAGTACGTGTTCCAGGA...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGATACTGAGGCTGCTTaGAGGGAGCACTTGGTTGAC +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPDTEAA*REHLVD
Trigger: GTCAACCAAGTGCTCCCTTCAAGCAGCCTCAGTATC...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCGATACTGAGGCTGCTTaGAGGGAGCACTTGGTTGAC +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSDTEAA*REHLVD
Trigger: GTCAACCAAGTGCTCCCTTCAAGCAGCCTCAGTATC...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCCTCCTTTGTCACAGATaGAGTTATTGTACAAGCTCA +
Preference number: 4 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFLLCHR*SYCTSS
Trigger: TGAGCTTGTACAATAACTGCATCTGTGACAAAGGAG...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCAAACAGCTTGCTGAACTaGTCGCAGTTGATGGTATCT +
Preference number: 4 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSNSLLN*SQLMVS
Trigger: AGATACCATCAACTGCGACCAGTTCAGCAAGCTGTT...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGATTTGGCTTTAAATaGCTCAATGGTGAACTTCTC +
Preference number: 4 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQAGFGFK*LNGELL
Trigger: GAGAAGTTCACCATTGAGCCATTTAAAGCCAAATCC...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTTCAGTGATGTTGTTTTaGGACAAGTTGAGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: FLTRLALVWTSRHLDASVSVMLF*DKLSVS
Trigger: GGAGACGCTCAACTTGTCCCAAAACAACATCACTGA...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CAA 72 bp GGCACTGCTGAGCCTGCCTGGCCAGCGGAGTGTGGATaGTTTCAAGTTATTATAGTTCGGCTGGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: GTAEPAWPAECG*FQVIIVRLVWF
Trigger: AAACCAAACCAGCCGAACTATAATAACTTGAAACAATCCACACTCCGCTGGCCAGGCAGGCTCAGCAGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR TCA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGCAGCTCCTTGTCTTTaGTTTCATTGCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRAAPCL*FHCTVP
Trigger: TGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACTTGTTCTCACTAAGTaGGTCCAGGTCCAGGTGTTG +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPLVLTK*VQVQVL
Trigger: CAACACCTGGACCTGGACTCACTTAGTGAGAACAAG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCCTTGTTCTCACTAAGTaGGTCCAGGTCCAGGTGTTG +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSLVLTK*VQVQVL
Trigger: CAACACCTGGACCTGGACTCACTTAGTGAGAACAAG...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTTCCAGTTCCATGTCCTaGAACAGCTTGCTGAACTGG +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFSSSMS*NSLLNW
Trigger: CCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGA...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp GGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCTCCTTTGTCACAGATaGAGTTATTGTACAAGCTCA +
Preference number: 4 (lower is better)
Translates to: GPGAGLGAFRRARLVSFPLLCHR*SYCTSS
Trigger: TGAGCTTGTACAATAACTGCATCTGTGACAAAGGAG...AGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTTCACCATCAGGCTCATaGAGCAAGGCACAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFSPSGS*SKAQWY
Trigger: ATACCACTGTGCCTTGCTGCATGAGCCTGATGGTGA...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR CCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCTCGCTCCACAGCCTCTaGCCATTTTGGAAGCTTGAT +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSSLHSL*PFWKLD
Trigger: ATCAAGCTTCCAAAATGGCCAGAGGCTGTGGAGCGA...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACAAGGCCAGGTACTGTaGCAGCTCCTTGTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPQGQVL*QLLVFD
Trigger: ATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCGGATTTGGCTTTAAATaGCTCAATGGTGAACTTCTC +
Preference number: 4 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSGFGFK*LNGELL
Trigger: GAGAAGTTCACCATTGAGCCATTTAAAGCCAAATCC...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAGTCTTCCACATCCTTTaGGGATTTGGCTTTAAATGG +
Preference number: 4 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKVFHIL*GFGFKW
Trigger: CCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGAC...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
3UTR CAA 72 bp TACATACGCAGTGCACAGAAACTTCCAGAGGGGAACTaGTTAGTTCTCCCTTCCGTAGTGTGGTCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: YIRSAQKLPEGN*LVLPSVVWSWE
Trigger: TTCCCAGGACCACACTACGGAAGGGAGAACTAACAAGTTCCCCTCTGGAAGTTTCTGTGCACTGCGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR GCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACTGAGGCTTCTGTCCTaGTTCTACAGGGATCTCTAT +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPLRLLS*FYRDLY
Trigger: ATAGAGATCCCTGTAGAAGCAGGACAGAAGCCTCAG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR GCA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCTCCTTTGTCACAGATaGAGTTATTGTACAAGCTCA +
Preference number: 4 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHLLCHR*SYCTSS
Trigger: TGAGCTTGTACAATAACTGCATCTGTGACAAAGGAG...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAACTGTAGCAGAAAACTaGAGAAGGCCAGTTGAGCCT +
Preference number: 4 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPTVAEN*RRPVEP
Trigger: AGGCTCAACTGGCCTTCTCCAGTTTTCTGCTACAGT...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTACTGTAGCAGAAAACTaGAGAAGGCCAGTTGAGCCT +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFTVAEN*RRPVEP
Trigger: AGGCTCAACTGGCCTTCTCCAGTTTTCTGCTACAGT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTATAATGCTACGGGGAGGGCAAGCCCCAGCCAGCTGTCCCATTAAGGACTCAGGATTTGGCTTTAAATaGCTCAATGGTGAACTTCTC +
Preference number: 4 (lower is better)
Translates to: TIMLRGGQAPASCPIKDSGFGFK*LNGELL
Trigger: GAGAAGTTCACCATTGAGCCATTTAAAGCCAAATCC...TGAGTCCTTAATGGGACAGCTGGCTGGGGCTTGCCCTCCCCGTAGCATTATAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp CTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATGCGTCTTCCACATCCTTTaGGGATTTGGCTTTAAATGG +
Preference number: 4 (lower is better)
Translates to: LAVAKADQCGYTELLPGCVFHIL*GFGFKW
Trigger: CCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGAC...GCATCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTAACAGCTTGCTGAACTaGTCGCAGTTGATGGTATCT +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFNSLLN*SQLMVS
Trigger: AGATACCATCAACTGCGACCAGTTCAGCAAGCTGTT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTTCAGTGATGTTGTTTTaGGACAAGTTGAGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFSVMLF*DKLSVS
Trigger: GGAGACGCTCAACTTGTCCCAAAACAACATCACTGA...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CCA 90 bp TGCAGGAGTAAGAACTTTTCACTGCATCTTTGGAAGCTACAAAGATCTTTGCAGGGTAGATTAGGACACTaGAGAGACCTGTGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: CRSKNFSLHLWKLQRSLQGRLGH*RDLCQP
Trigger: GGGCTGGCACAGGTCTCTCCAGTGTCCTAATCTACC...CTGCAAAGATCTTTGTAGCTTCCAAAGATGCAGTGAAAAGTTCTTACTCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCGTCTTCCACATCCTTTaGGGATTTGGCTTTAAATGG +
Preference number: 4 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSVFHIL*GFGFKW
Trigger: CCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGAC...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR TCA 90 bp TACATAACCCAGGAGAGAAGATACTGTGACTCTGCCCATTTTACAGATAAGGAAGATACTGAGGCTGCTTaGAGGGAGCACTTGGTTGAC +
Preference number: 4 (lower is better)
Translates to: YITQERRYCDSAHFTDKEDTEAA*REHLVD
Trigger: GTCAACCAAGTGCTCCCTTCAAGCAGCCTCAGTATC...TTCCTTATCTGTAAAATGGGCAGAGTCACAGTATCTTCTCTCCTGGGTTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp TGCAGGAGTAAGAACTTTTCACTGCATCTTTGGAAGCTACAAAGATCTTTGCAGAGAGTGGTGAAGATCTaGATGTGCCCAGTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: CRSKNFSLHLWKLQRSLQRVVKI*MCPVGR
Trigger: TCTCCCCACTGGGCACATCCAGATCTTCACCACTCT...CTGCAAAGATCTTTGTAGCTTCCAAAGATGCAGTGAAAAGTTCTTACTCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CCA 90 bp TACATAACCCAGGAGAGAAGATACTGTGACTCTGCCCATTTTACAGATAAGGAAATTTGCCAGAGTCCCTaGGGCAGAGTGGTGAAGATC +
Preference number: 4 (lower is better)
Translates to: YITQERRYCDSAHFTDKEICQSP*GRVVKI
Trigger: GATCTTCACCACTCTGCCCCAGGGACTCTGGCAAAT...TTCCTTATCTGTAAAATGGGCAGAGTCACAGTATCTTCTCTCCTGGGTTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 72 bp CAGCCATCATCAACACAGAGTAATGAGAGACATTTTTaGGCATTTCCAGACAGACCAAAGGCAGCGAGCGAT +
Preference number: 4 (lower is better)
Translates to: QPSSTQSNERHF*AFPDRPKAASD
Trigger: ATCGCTCGCTGCCTTTGGTCTGTCTGGAAATGCCAAAAAATGTCTCTCATTACTCTGTGTTGATGATGGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
3UTR CAA 72 bp GGGATCTGGGTTCAAATCCTGACTACGCGCAACAGCTaGCTATATGGCCTTTGGCAAAACAAAATCAAACAT +
Preference number: 4 (lower is better)
Translates to: GIWVQILTTRNS*LYGLWQNKIKH
Trigger: ATGTTTGATTTTGTTTTGCCAAAGGCCATATAGCAAGCTGTTGCGCGTAGTCAGGATTTGAACCCAGATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
3UTR CAA 72 bp TCGGGTCACCAGGCTTGCTTTATTCCCTCAGCCATTTaGCTGACCCATTTTATTAATATTGTTTCCACATTG +
Preference number: 4 (lower is better)
Translates to: SGHQACFIPSAI*LTHFINIVSTL
Trigger: CAATGTGGAAACAATATTAATAAAATGGGTCAGCAAAATGGCTGAGGGAATAAAGCAAGCCTGGTGACCCGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS CCA 90 bp GTCCTGGCTGGCTGTCTCCAAGGCCCTGCCCAGCACATACACATCTaGGGGTGTGAGCCGGGTGCCCAGGAAGGAGAGGTGGCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: VLAGCLQGPAQHIHI*GCEPGAQEGEVARE
Trigger: CTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGTATGTGCTGGGCAGGGCCTTGGAGACAGCCAGCCAGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 90 bp TGGCTGTCTCCAAGGCCCTGCCCAGCACATACACATCTGGGGGTGTaGGCCGGGTGCCCAGGAAGGAGAGGTGGCCAGGGAGCTGGTGTG +
Preference number: 5 (lower is better)
Translates to: WLSPRPCPAHTHLGV*AGCPGRRGGQGAGV
Trigger: CACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGTATGTGCTGGGCAGGGCCTTGGAGACAGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp CCAGCAGGCCATCCAGGAGGGCCCGCACCTGCCTGGGCTTCTGGCTaGAGAGCAGTGTCTGTACTTGGGCCAGGATGGCCTGGAAGTGGT +
Preference number: 5 (lower is better)
Translates to: PAGHPGGPAPAWASG*RAVSVLGPGWPGSG
Trigger: ACCACTTCCAGGCCATCCTGGCCCAAGTACAGACACTGCTCTCCAGCCAGAAGCCCAGGCAGGTGCGGGCCCTCCTGGATGGCCTGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS GCA 90 bp CTGTCCAGTCGGGAGTGGCCAGCTCCCTTTCCTGGCTCTTGTTGCTaGCTCTTTCCAGCCTGGCCCGTACCAGCTCCACGGCCACCAGAG +
Preference number: 5 (lower is better)
Translates to: LSSREWPAPFPGSCC*LFPAWPVPAPRPPE
Trigger: CTCTGGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp GCTCTGTCCAGTCGGGAGTGGCCAGCTCCCTTTCCTGGCTCTTGTTaGTGCCTCTTTCCAGCCTGGCCCGTACCAGCTCCACGGCCACCA +
Preference number: 5 (lower is better)
Translates to: ALSSREWPAPFPGSC*CLFPAWPVPAPRPP
Trigger: TGGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp TGGCCAGCTCCCTTTCCTGGCTCTTGTTGCTGCCTCTTTCCAGCCTaGCCCGTACCAGCTCCACGGCCACCAGAGGACCCCTTGGGCTCT +
Preference number: 5 (lower is better)
Translates to: WPAPFPGSCCCLFPA*PVPAPRPPEDPLGS
Trigger: AGAGCCCAAGGGGTCCTCTGGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp CTGCCAGACCACCGTGGGCTAGCTGGCGCTCTGTCCAGTCGGGAGTaGCCAGCTCCCTTTCCTGGCTCTTGTTGCTGCCTCTTTCCAGCC +
Preference number: 5 (lower is better)
Translates to: LPDHRGLAGALSSRE*PAPFPGSCCCLFPA
Trigger: GGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAGAGCGCCAGCTAGCCCACGGTGGTCTGGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp GGGGGTGTGAGCCGGGTGCCCAGGAAGGAGAGGTGGCCAGGGAGCTaGTGTGCAACATGCTCCCATATCCCAGGTTGCTGTGTCTCGTGG +
Preference number: 5 (lower is better)
Translates to: GGVSRVPRKERWPGS*CATCSHIPGCCVSW
Trigger: CCACGAGACACAGCAACCTGGGATATGGGAGCATGTTGCACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCTCACACCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGAGCTCCCAGGCCAGCTaGGCCAGCTCGACTAAGGCT +
Preference number: 5 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVSSQAS*ASSTKA
Trigger: AGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGCT...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACAGGTACAGCAGATGCCTGCCTTGGAGAGTGCCTCAGTGCTGTCCCTGGTGGCAAGGCTGGAGGCCAGTaGCTGGGCACCGGCAGCCGT +
Preference number: 5 (lower is better)
Translates to: TGTADACLGECLSAVPGGKAGGQ*LGTGSR
Trigger: ACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCTT...GCCACCAGGGACAGCACTGAGGCACTCTCCAAGGCAGGCATCTGCTGTACCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS GCA 90 bp CGGGTGCCCAGGAAGGAGAGGTGGCCAGGGAGCTGGTGTGCAACATaGTCCCATATCCCAGGTTGCTGTGTCTCGTGGGCACAGTGGAGC +
Preference number: 5 (lower is better)
Translates to: RVPRKERWPGSWCAT*SHIPGCCVSWAQWS
Trigger: GCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGGGAGCATGTTGCACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp GCAACATGCTCCCATATCCCAGGTTGCTGTGTCTCGTGGGCACAGTaGAGCAGCTCCAGCAGCCTCCCTGCCCGGAGTGTCCCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: ATCSHIPGCCVSWAQ*SSSSSLPARSVPSF
Trigger: GAAGCTGGGGACACTCCGGGCAGGGAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGGGAGCATGTTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTAGGAGGCCCAGGGCCTaGTCTTGGTTCCCCGCTGTC +
Preference number: 5 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCRRPRA*SWFPAV
Trigger: GACAGCGGGGAACCAAGACAAGGCCCTGGGCCTCCT...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp TGTGAGCCGGGTGCCCAGGAAGGAGAGGTGGCCAGGGAGCTGGTGTaGAACATGCTCCCATATCCCAGGTTGCTGTGTCTCGTGGGCACA +
Preference number: 5 (lower is better)
Translates to: CEPGAQEGEVARELV*NMLPYPRLLCLVGT
Trigger: TGTGCCCACGAGACACAGCAACCTGGGATATGGGAGCATGTTGCACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCTCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGTCCCTTTCCTGGCTCTaGTTGCTGCCTCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRSLSWL*LLPLSS
Trigger: GCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGA...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTAGGAGGCCCAGGGCCTaGTCTTGGTTCCCCGCTGTC +
Preference number: 5 (lower is better)
Translates to: TRLALVWTSRHLDASVPRRRPRA*SWFPAV
Trigger: GACAGCGGGGAACCAAGACAAGGCCCTGGGCCTCCT...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCCCGGGTGAACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGAGAGCTTCTGCAAGCTaGCAGGCACCCACATCAGTG +
Preference number: 5 (lower is better)
Translates to: LPGEPTEGSPSSVYQRSRRASAS*QAPTSV
Trigger: CACTGATGTGGGTGCCTGCAAGCTTGCAGAAGCTCT...CCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTTCACCCGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCCATGTCCGGAAGTACTaGTGCCAGGCTCTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQAHVRKY*CQALGS
Trigger: GGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATG...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp CCATGGTGGCACACAGACTATGGTCTCCATGGTCCCTGTAGCTGGTaGCCCTCTCTACCGTGGGAGCCTGCAGACTGTTGCAGACCCAGC +
Preference number: 5 (lower is better)
Translates to: PWWHTDYGLHGPCSW*PSLPWEPADCCRPS
Trigger: GCTGGGTCTGCAACAGTCTGCAGGCTCCCACGGTAGAGAGGGGCACCAGCTACAGGGACCATGGAGACCATAGTCTGTGTGCCACCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CCA 90 bp CTTGCAAGGTGCTTTGGTGTCTTCGTCCCAGCTCCCAGGCCAGCTTaGCCAGCTCGACTAAGGCTCCGGGAGGACTGTTCTGAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: LARCFGVFVPAPRPA*PARLRLREDCSELQ
Trigger: CTGCAGCTCAGAACAGTCCTCCCGGAGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCACCTTGCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTCTATGAAGAGGTCCTaGCTCAGGCCCTCGAGCTGG +
Preference number: 5 (lower is better)
Translates to: REGEARRTPRHSPEADHSSMKRS*LRPSSW
Trigger: CCAGCTCGAGGGCCTGAGCAAGGACCTCTTCATAGA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGATGGCAGGAAGATCCTaGGCTGCATCTTCTGAGGGG +
Preference number: 5 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVMAGRS*AASSEG
Trigger: CCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCAT...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CCGAAGCAGACCACTCCCTGCCTTTTGGTTCACACCCAGGGTCTGGGCCAGGCCATGGCAGGAAGATCCTaGGCTGCATCTTCTGAGGGG +
Preference number: 5 (lower is better)
Translates to: PKQTTPCLLVHTQGLGQAMAGRS*AASSEG
Trigger: CCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCAT...GGCCTGGCCCAGACCCTGGGTGTGAACCAAAAGGCAGGGAGTGGTCTGCTTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGAAGGCTGGAGGCCAGTaGCTGGGCACCGGCAGCCGT +
Preference number: 5 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVKAGGQ*LGTGSR
Trigger: ACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCTT...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp GTACCTGGTAAGAACCTTCTGTTTCCTATCCGCCACTGCAGCCACTaGAGGCTCCACCAGAGCTCCCAGGCAGTGGGCTCGAGGCTGGAA +
Preference number: 5 (lower is better)
Translates to: VPGKNLLFPIRHCSH*RLHQSSQAVGSRLE
Trigger: TTCCAGCCTCGAGCCCACTGCCTGGGAGCTCTGGTGGAGCCTGCAGTGGCTGCAGTGGCGGATAGGAAACAGAAGGTTCTTACCAGGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp ACACTGGAGAGACCTGTGCCAGCCCCTGAGATTTGCCAGAGTCCCTaGGGCAGAGTGGTGAAGATCTGGATGTGCCCAGTGGGGAGATCC +
Preference number: 5 (lower is better)
Translates to: TLERPVPAPEICQSP*GRVVKIWMCPVGRS
Trigger: GGATCTCCCCACTGGGCACATCCAGATCTTCACCACTCTGCCCCAGGGACTCTGGCAAATCTCAGGGGCTGGCACAGGTCTCTCCAGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp GGCTCTGGGGACAGAGATCCACAGGGTCCGTGCAGGAGGCCATCTTaGGCCTCTAGCTCCTCGAAAGCATCTAGGATGAGCAGAACACGG +
Preference number: 5 (lower is better)
Translates to: GSGDRDPQGPCRRPS*ASSSSKASRMSRTR
Trigger: CCGTGTTCTGCTCATCCTAGATGCTTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCACGGACCCTGTGGATCTCTGTCCCCAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp AAGGCTCAACGCCAGTCTGACGAAGGTCCAAGGAGAAGTCCTGGCTaGCTGTCTCCAAGGCCCTGCCCAGCACATACACATCTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: KAQRQSDEGPRRSPG*LSPRPCPAHTHLGV
Trigger: CACCCCCAGATGTGTATGTGCTGGGCAGGGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGACCTTCGTCAGACTGGCGTTGAGCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCACCAGAGGACCCCTaGGGCTCTGGGGCAATGCCT +
Preference number: 5 (lower is better)
Translates to: FLTRLALVWTSRHLDASVPPEDP*GSGAMP
Trigger: AGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTGG...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGCCACCAGAGGACCCCTaGGGCTCTGGGGCAATGCCT +
Preference number: 5 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVPPEDP*GSGAMP
Trigger: AGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTGG...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GCAGTGAAGACAGGATCTAGGCAGTGGTGGGCTGTATGGTGGGCACACGGGCGCTCCCTTTCCTGGCTCTaGTTGCTGCCTCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: AVKTGSRQWWAVWWAHGRSLSWL*LLPLSS
Trigger: GCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGA...GCGCCCGTGTGCCCACCATACAGCCCACCACTGCCTAGATCCTGTCTTCACTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CAA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACAGGAGGCCCAGGGCCTaGTCTTGGTTCCCCGCTGTC +
Preference number: 5 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHRRPRA*SWFPAV
Trigger: GACAGCGGGGAACCAAGACAAGGCCCTGGGCCTCCT...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGTCCAGGTCCAGGTGTaGCAGAGAAGAGAAGGCTGG +
Preference number: 5 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCVQVQV*QRREGW
Trigger: CCAGCCTTCTCTTCTCTGCAACACCTGGACCTGGAC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GGCCCTCTAGCCCAGCTCCCACTTCCTAGGATGTGCCAGTCCTGCTGGCATCAGCCGGCAGCCGTGAACTaGTTGAACTGGACATCCATC +
Preference number: 5 (lower is better)
Translates to: GPLAQLPLPRMCQSCWHQPAAVN*LNWTSI
Trigger: GATGGATGTCCAGTTCAACAAGTTCACGGCTGCCGG...CTGATGCCAGCAGGACTGGCACATCCTAGGAAGTGGGAGCTGGGCTAGAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS CCA 90 bp GTGTACAAGGTAGCTGGGCCTCTGTGCCCTGTTCTAGCAGGGCCTTaGAGAGCTGGCACACAGCCCTGCACACAACAGGGCTGTGACTAT +
Preference number: 5 (lower is better)
Translates to: VYKVAGPLCPVLAGP*RAGTQPCTQQGCDY
Trigger: ATAGTCACAGCCCTGTTGTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTACCTTGTACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCCTGAACTGGTCGCAGTaGATGGTATCTGTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: REGEARRTPRHSPEADHSLNWSQ*MVSVSG
Trigger: GCCAGACACAGATACCATCAACTGCGACCAGTTCAG...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTATGAAGAGGTCCTaGCTCAGGCCCTCGAGCTGG +
Preference number: 5 (lower is better)
Translates to: TRLALVWTSRHLDASVPRSMKRS*LRPSSW
Trigger: CCAGCTCGAGGGCCTGAGCAAGGACCTCTTCATAGA...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCGGCCATTTTGGAAGCTaGATGGAAGACTCGGGACCC +
Preference number: 5 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSGHFGS*MEDSGP
Trigger: GGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCC...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGACTGGAGAAGGCCAGTaGAGCCTCCGTGGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLTGEGQ*SLRGLQ
Trigger: CTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAGT...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCACTGGAGAAGGCCAGTaGAGCCTCCGTGGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSTGEGQ*SLRGLQ
Trigger: CTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAGT...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AACCCACGGAAGGCAGCCCCAGTTCTGTCTACCAGCGCTCACGGCCGCAGAGTGAGCTTCGACACACCCTaGTCTCCGATCTTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: NPRKAAPVLSTSAHGRRVSFDTP*SPILFS
Trigger: TGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCT...CACTCTGCGGCCGTGAGCGCTGGTAGACAGAACTGGGGCTGCCTTCCGTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTCATGTCCGGAAGTACTaGTGCCAGGCTCTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: TRLALVWTSRHLDASVPRHVRKY*CQALGS
Trigger: GGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATG...ACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp CCCAGGTTTTCACCTCCACGGATGAAAACCGGGTTTCTTGCAAGGTaGTTTGGTGTCTTCGTCCCAGCTCCCAGGCCAGCTTGGCCAGCT +
Preference number: 5 (lower is better)
Translates to: PRFSPPRMKTGFLAR*FGVFVPAPRPAWPA
Trigger: AGCTGGCCAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGAAACCCGGTTTTCATCCGTGGAGGTGAAAACCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp AGGGTCAGGGAAATCTTCCGGGCCAGGGCATCACCATCAGGCTCATaGAGCAAGGCACAGTGGTATTCCCGTGAGAGCAGCTCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: RVREIFRARASPSGS*SKAQWYSRESSSSS
Trigger: GGAAGAAGAGCTGCTCTCACGGGAATACCACTGTGCCTTGCTGCATGAGCCTGATGGTGATGCCCTGGCCCGGAAGATTTCCCTGACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CCA 90 bp ACTGTGCCAGCCACACAGCACCCAGGAAACACTGTAGCAGAAAACTaGAGAAGGCCAGTTGAGCCTCCGTGGTCTCCAGGGTCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: TVPATQHPGNTVAEN*RRPVEPPWSPGSAA
Trigger: TGCAGCAGACCCTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAGTTTTCTGCTACAGTGTTTCCTGGGTGCTGTGTGGCTGGCACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTCTGAACTGGTCGCAGTaGATGGTATCTGTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCLNWSQ*MVSVSG
Trigger: GCCAGACACAGATACCATCAACTGCGACCAGTTCAG...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTTCCCTTTCCTGGCTCTaGTTGCTGCCTCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQASLSWL*LLPLSS
Trigger: GCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGA...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGTCCCTTTCCTGGCTCTaGTTGCTGCCTCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: EPLGGPVGSSRKTCFLTRSLSWL*LLPLSS
Trigger: GCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGA...CCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGATGGCAGGAAGATCCTaGGCTGCATCTTCTGAGGGG +
Preference number: 5 (lower is better)
Translates to: EPLGGPVGSSRKTCFLTRMAGRS*AASSEG
Trigger: CCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCAT...CCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTAGAGCTTCTGCAAGCTaGCAGGCACCCACATCAGTG +
Preference number: 5 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQARASAS*QAPTSV
Trigger: CACTGATGTGGGTGCCTGCAAGCTTGCAGAAGCTCT...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCAGAGCTTCTGCAAGCTaGCAGGCACCCACATCAGTG +
Preference number: 5 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSRASAS*QAPTSV
Trigger: CACTGATGTGGGTGCCTGCAAGCTTGCAGAAGCTCT...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTAAGGCTGGAGGCCAGTaGCTGGGCACCGGCAGCCGT +
Preference number: 5 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFKAGGQ*LGTGSR
Trigger: ACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCTT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAAAGGCTGGAGGCCAGTaGCTGGGCACCGGCAGCCGT +
Preference number: 5 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPKAGGQ*LGTGSR
Trigger: ACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCTT...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp GTCACTGCCCAGGTTTTCACCTCCACGGATGAAAACCGGGTTTCTTaGAAGGTGCTTTGGTGTCTTCGTCCCAGCTCCCAGGCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: VTAQVFTSTDENRVS*KVLWCLRPSSQASL
Trigger: CAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGAAACCCGGTTTTCATCCGTGGAGGTGAAAACCTGGGCAGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp CCCTGTAGCTGGTGCCCCTCTCTACCGTGGGAGCCTGCAGACTGTTaGAGACCCAGCTCAAGAAAGTCAAGTCTAAGTCCCCTTTCTCCA +
Preference number: 5 (lower is better)
Translates to: PCSWCPSLPWEPADC*RPSSRKSSLSPLSP
Trigger: TGGAGAAAGGGGACTTAGACTTGACTTTCTTGAGCTGGGTCTGCAACAGTCTGCAGGCTCCCACGGTAGAGAGGGGCACCAGCTACAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CCA 90 bp GTTTTCACCTCCACGGATGAAAACCGGGTTTCTTGCAAGGTGCTTTaGTGTCTTCGTCCCAGCTCCCAGGCCAGCTTGGCCAGCTCGACT +
Preference number: 5 (lower is better)
Translates to: VFTSTDENRVSCKVL*CLRPSSQASLASST
Trigger: AGTCGAGCTGGCCAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGAAACCCGGTTTTCATCCGTGGAGGTGAAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp GACTATGGTCTCCATGGTCCCTGTAGCTGGTGCCCCTCTCTACCGTaGGAGCCTGCAGACTGTTGCAGACCCAGCTCAAGAAAGTCAAGT +
Preference number: 5 (lower is better)
Translates to: DYGLHGPCSWCPSLP*EPADCCRPSSRKSS
Trigger: ACTTGACTTTCTTGAGCTGGGTCTGCAACAGTCTGCAGGCTCCCACGGTAGAGAGGGGCACCAGCTACAGGGACCATGGAGACCATAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS-3UTR CAA 90 bp GGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTGGCCATTTTGGAAGCTaGATGGAAGACTCGGGACCC +
Preference number: 5 (lower is better)
Translates to: GPGAGLGAFRRARLVSFPGHFGS*MEDSGP
Trigger: GGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCC...AGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCACCACCAGAGGACCCCTaGGGCTCTGGGGCAATGCCT +
Preference number: 5 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPPPEDP*GSGAMP
Trigger: AGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTGG...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCCTTTCCTGGCTCTTGTaGCTGCCTCTTTCCAGCCTG +
Preference number: 5 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSLSWLL*LPLSSL
Trigger: CAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAG...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAAGGAGGCCCAGGGCCTaGTCTTGGTTCCCCGCTGTC +
Preference number: 5 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPRRPRA*SWFPAV
Trigger: GACAGCGGGGAACCAAGACAAGGCCCTGGGCCTCCT...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGAGCTCCCAGGCCAGCTaGGCCAGCTCGACTAAGGCT +
Preference number: 5 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRSSQAS*ASSTKA
Trigger: AGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGCT...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGAGCTCCCAGGCCAGCTaGGCCAGCTCGACTAAGGCT +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRSSQAS*ASSTKA
Trigger: AGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGCT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGACTGGAGAAGGCCAGTaGAGCCTCCGTGGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRTGEGQ*SLRGLQ
Trigger: CTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAGT...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGAGGCTGGAAGGATCTTaGCCAGTGTGGGGAAAGCCT +
Preference number: 5 (lower is better)
Translates to: ALVWTSRHLDASVPRSVLRLEGS*PVWGKP
Trigger: AGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCT...CAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACGTCCAGGTCCAGGTGTaGCAGAGAAGAGAAGGCTGG +
Preference number: 5 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHVQVQV*QRREGW
Trigger: CCAGCCTTCTCTTCTCTGCAACACCTGGACCTGGAC...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TTCAGAGCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCATGTCCGGAAGTACTaGTGCCAGGCTCTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: FRASRWPCWEQQEDMLSHHVRKY*CQALGS
Trigger: GGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATG...GTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGCTCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TGTCTACCAGCGCTCACGGCCGCAGAGTGGGGCTGTCTTTGTACCTGGTGCTGTGCAGCCGTGAACTTGTaGAACTGGACATCCATCACA +
Preference number: 5 (lower is better)
Translates to: CLPALTAAEWGCLCTWCCAAVNL*NWTSIT
Trigger: TGTGATGGATGTCCAGTTCAACAAGTTCACGGCTGC...ACAGCACCAGGTACAAAGACAGCCCCACTCTGCGGCCGTGAGCGCTGGTAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCCCGGCAGCCGTGAACTaGTTGAACTGGACATCCATC +
Preference number: 5 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSPAAVN*LNWTSI
Trigger: GATGGATGTCCAGTTCAACAAGTTCACGGCTGCCGG...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 90 bp GTGATGTTGTTTTGGGACAAGTTGAGCGTCTCCAGGGCCTTCAGCTaGGGGAAGGTGGCTGAGAGCTTCGACACACCCTTGTCTCCGATC +
Preference number: 5 (lower is better)
Translates to: VMLFWDKLSVSRAFS*GKVAESFDTPLSPI
Trigger: GATCGGAGACAAGGGTGTGTCGAAGCTCTCAGCCACCTTCCCTCAGCTGAAGGCCCTGGAGACGCTCAACTTGTCCCAAAACAACATCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp GCAGGAAGATCCTTGGCTGCATCTTCTGAGGGGTTTCTCAGCCTCTaGGTCTGCACGAGACGATCCAGGTCTTCCACATCCTTTGGGGAT +
Preference number: 5 (lower is better)
Translates to: AGRSLAASSEGFLSL*VCTRRSRSSTSFGD
Trigger: ATCCCCAAAGGATGTGGAAGACCTGGATCGTCTCGTGCAGACCCAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAGGATCTTCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGTCTATGAAGAGGTCCTaGCTCAGGCCCTCGAGCTGG +
Preference number: 5 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRSMKRS*LRPSSW
Trigger: CCAGCTCGAGGGCCTGAGCAAGGACCTCTTCATAGA...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGGGCCATTTTGGAAGCTaGATGGAAGACTCGGGACCC +
Preference number: 5 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVGHFGS*MEDSGP
Trigger: GGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCC...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCGTGCTTTCCTGGCTCTTGTaGCTGCCTCTTTCCAGCCTG +
Preference number: 5 (lower is better)
Translates to: LELVLGPSEEQDLCPFLVLSWLL*LPLSSL
Trigger: CAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAG...CACGAGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTAGCTCCCAGGCCAGCTaGGCCAGCTCGACTAAGGCT +
Preference number: 5 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFSSQAS*ASSTKA
Trigger: AGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGCT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGACTGGAGAAGGCCAGTaGAGCCTCCGTGGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRTGEGQ*SLRGLQ
Trigger: CTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAGT...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTTGTCTTTGATTTCATaGCACTGTGCCAGCCACACA +
Preference number: 5 (lower is better)
Translates to: REGEARRTPRHSPEADHSLSLIS*HCASHT
Trigger: TGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCAGCTTCGACACACCCTaGTCTCCGATCTTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSSFDTP*SPILFS
Trigger: TGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCT...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CGTGAAGGTGAAGCCAGAAGAACTCCCCGCCACAGCCCCGAAGCAGACCACTCCTCACAGATGCAGTTATaGTACAAGCTCAGCCTTAGG +
Preference number: 5 (lower is better)
Translates to: REGEARRTPRHSPEADHSSQMQL*YKLSLR
Trigger: CCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGA...GGAGTGGTCTGCTTCGGGGCTGTGGCGGGGAGTTCTTCTGGCTTCACCTTCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTGGAGCCTGCAGACTGTaGCAGACCCAGCTCAAGAAA +
Preference number: 5 (lower is better)
Translates to: FLTRLALVWTSRHLDASVGACRL*QTQLKK
Trigger: TTTCTTGAGCTGGGTCTGCAACAGTCTGCAGGCTCC...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS GCA 90 bp AGATCCTTGGCTGCATCTTCTGAGGGGTTTCTCAGCCTCTGGGTCTaGACGAGACGATCCAGGTCTTCCACATCCTTTGGGGATTTGGCT +
Preference number: 5 (lower is better)
Translates to: RSLAASSEGFLSLWV*TRRSRSSTSFGDLA
Trigger: AGCCAAATCCCCAAAGGATGTGGAAGACCTGGATCGTCTCGTGCAGACCCAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAGGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAACTGAACTGGTCGCAGTaGATGGTATCTGTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKLNWSQ*MVSVSG
Trigger: GCCAGACACAGATACCATCAACTGCGACCAGTTCAG...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTATGTCCTGCAACAGCTaGCTGAACTGGTCGCAGTTG +
Preference number: 5 (lower is better)
Translates to: FLTRLALVWTSRHLDASVMSCNS*LNWSQL
Trigger: CAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACAT...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTACAGACTGTCTCTGCTGGCCGGGCTCCTCACTTTCTCCTCTCTGGGTGTCCCTACTGTGGCAGCTCCTaGTCTTTGATTTCATTGCAC +
Preference number: 5 (lower is better)
Translates to: LQTVSAGRAPHFLLSGCPYCGSS*SLISLH
Trigger: GTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTA...GGGACACCCAGAGAGGAGAAAGTGAGGAGCCCGGCCAGCAGAGACAGTCTGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CAA 90 bp GGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCTACTGTGGCAGCTCCTaGTCTTTGATTTCATTGCAC +
Preference number: 5 (lower is better)
Translates to: GSSRKTCFLTRLALVWTSYCGSS*SLISLH
Trigger: GTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTA...GCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTAGCTGTAGCCAAGGCTGACCAATGTGGCTATACAGAACTGCTCCCAGGATGCAGGCTGGAAGGATCTTaGCCAGTGTGGGGAAAGCCT +
Preference number: 5 (lower is better)
Translates to: LAVAKADQCGYTELLPGCRLEGS*PVWGKP
Trigger: AGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCT...GCATCCTGGGAGCAGTTCTGTATAGCCACATTGGTCAGCCTTGGCTACAGCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CAA 90 bp CTGCAGGGGCAGGGTGATGGGATGTTGACTCTTATGGGCTATGGCCCACAGAAAACTTGTGCCAGGCTCTaGGCTCCTTTGTCACAGATG +
Preference number: 5 (lower is better)
Translates to: LQGQGDGMLTLMGYGPQKTCARL*APLSQM
Trigger: CATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGT...TTTCTGTGGGCCATAGCCCATAAGAGTCAACATCCCATCACCCTGCCCCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGCATGTCCGGAAGTACTaGTGCCAGGCTCTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRHVRKY*CQALGS
Trigger: GGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATG...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTGCAGCCGTGAACTTGTaGAACTGGACATCCATCACA +
Preference number: 5 (lower is better)
Translates to: GPGAGLGAFRRARLVSFPAAVNL*NWTSIT
Trigger: TGTGATGGATGTCCAGTTCAACAAGTTCACGGCTGC...AGGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 90 bp TCTTCCTCGGAGTCAAGGCCAGGTACTGTGGCAGCTCCTTGTCTTTaGTTTCATTGCACTGTGCCAGCCACACAGCACCCAGGAAACACT +
Preference number: 5 (lower is better)
Translates to: SSSESRPGTVAAPCL*FHCTVPATQHPGNT
Trigger: AGTGTTTCCTGGGTGCTGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp ACAGGGATCTCTATGTTCTCACCAAAGCCTTCCTCTGCTCCAATGTaGTCTATGAAGAGGTCCTTGCTCAGGCCCTCGAGCTGGGTATCC +
Preference number: 5 (lower is better)
Translates to: TGISMFSPKPSSAPM*SMKRSLLRPSSWVS
Trigger: GGATACCCAGCTCGAGGGCCTGAGCAAGGACCTCTTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGTGAGAACATAGAGATCCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp CGGGTCTCTTCATCCAGTTCCATGTCCTGCAACAGCTTGCTGAACTaGTCGCAGTTGATGGTATCTGTGTCTGGCTCTGAGCTGAGTTCG +
Preference number: 5 (lower is better)
Translates to: RVSSSSSMSCNSLLN*SQLMVSVSGSELSS
Trigger: CGAACTCAGCTCAGAGCCAGACACAGATACCATCAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGATGAAGAGACCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
ENSMUST00000230892.2
CDS-3UTR CAA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCTCTATGAAGAGGTCCTaGCTCAGGCCCTCGAGCTGG +
Preference number: 5 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSSMKRS*LRPSSW
Trigger: CCAGCTCGAGGGCCTGAGCAAGGACCTCTTCATAGA...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGGGCCATTTTGGAAGCTaGATGGAAGACTCGGGACCC +
Preference number: 5 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRGHFGS*MEDSGP
Trigger: GGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCC...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACCCAGGAGAGAAGATACTGTGACTCTGCCCATTTTACAGATAAGGAAGCTAAGCCACCAGAGGACCCCTaGGGCTCTGGGGCAATGCCT +
Preference number: 5 (lower is better)
Translates to: TQERRYCDSAHFTDKEAKPPEDP*GSGAMP
Trigger: AGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTGG...CTTAGCTTCCTTATCTGTAAAATGGGCAGAGTCACAGTATCTTCTCTCCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGCTTTCCTGGCTCTTGTaGCTGCCTCTTTCCAGCCTG +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRLSWLL*LPLSSL
Trigger: CAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAG...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GCCTCTAGGTGGCCCTGTTGGGAGCAGCAGGAAGACATGCTTTCTCACCAGGCTTTGTCTTTGATTTCATaGCACTGTGCCAGCCACACA +
Preference number: 5 (lower is better)
Translates to: ASRWPCWEQQEDMLSHQALSLIS*HCASHT
Trigger: TGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAA...AGCCTGGTGAGAAAGCATGTCTTCCTGCTGCTCCCAACAGGGCCACCTAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTTGTCTTTGATTTCATaGCACTGTGCCAGCCACACA +
Preference number: 5 (lower is better)
Translates to: SHQAGPGLDKQALGCFCSLSLIS*HCASHT
Trigger: TGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAA...GGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGATGGCAGGAAGATCCTaGGCTGCATCTTCTGAGGGG +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRMAGRS*AASSEG
Trigger: CCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCAT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGAGGCTGGAAGGATCTTaGCCAGTGTGGGGAAAGCCT +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRRLEGS*PVWGKP
Trigger: AGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTGTCCAGGTCCAGGTGTaGCAGAGAAGAGAAGGCTGG +
Preference number: 5 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFVQVQV*QRREGW
Trigger: CCAGCCTTCTCTTCTCTGCAACACCTGGACCTGGAC...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGAGAGCTTCTGCAAGCTaGCAGGCACCCACATCAGTG +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRRASAS*QAPTSV
Trigger: CACTGATGTGGGTGCCTGCAAGCTTGCAGAAGCTCT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTCACAGATGCAGTTATaGTACAAGCTCAGCCTTAGG +
Preference number: 5 (lower is better)
Translates to: QAGPGLDKQALGCFCSSFSQMQL*YKLSLR
Trigger: CCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGA...GAACGAGGAACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGCCGGCAGCCGTGAACTaGTTGAACTGGACATCCATC +
Preference number: 5 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRPAAVN*LNWTSI
Trigger: GATGGATGTCCAGTTCAACAAGTTCACGGCTGCCGG...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAACCGGCAGCCGTGAACTaGTTGAACTGGACATCCATC +
Preference number: 5 (lower is better)
Translates to: SRHLDASVPRSVLECRREPAAVN*LNWTSI
Trigger: GATGGATGTCCAGTTCAACAAGTTCACGGCTGCCGG...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp TCCTGCTTCTACAGGGATCTCTATGTTCTCACCAAAGCCTTCCTCTaGTCCAATGTGCTCTATGAAGAGGTCCTTGCTCAGGCCCTCGAG +
Preference number: 5 (lower is better)
Translates to: SCFYRDLYVLTKAFL*SNVLYEEVLAQALE
Trigger: CTCGAGGGCCTGAGCAAGGACCTCTTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGTGAGAACATAGAGATCCCTGTAGAAGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp TGTCCGGAAGTACTTGTGCCAGGCTCTTGGCTCCTTTGTCACAGATaGAGTTATTGTACAAGCTCAGCCTTAGGAGGGACTTGGCTAGGG +
Preference number: 5 (lower is better)
Translates to: CPEVLVPGSWLLCHR*SYCTSSALGGTWLG
Trigger: CCCTAGCCAAGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp GTTGTCATAGGGTCTCTTCTTCCTCGGAGTCAAGGCCAGGTACTGTaGCAGCTCCTTGTCTTTGATTTCATTGCACTGTGCCAGCCACAC +
Preference number: 5 (lower is better)
Translates to: VVIGSLLPRSQGQVL*QLLVFDFIALCQPH
Trigger: GTGTGGCTGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAAGAAGAGACCCTATGACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAACTGAACTGGTCGCAGTaGATGGTATCTGTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: SRHLDASVPRSVLECRRELNWSQ*MVSVSG
Trigger: GCCAGACACAGATACCATCAACTGCGACCAGTTCAG...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGGCTGGAAGGATCTTaGCCAGTGTGGGGAAAGCCT +
Preference number: 5 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSRLEGS*PVWGKP
Trigger: AGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCT...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGGCCTGGAGCTGGTCTTGGGGCCTTCAGAAGAGCAAGACTTGTGTCCTTTCCTCACAGATGCAGTTATaGTACAAGCTCAGCCTTAGG +
Preference number: 5 (lower is better)
Translates to: RAWSWSWGLQKSKTCVLSSQMQL*YKLSLR
Trigger: CCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGA...GGAAAGGACACAAGTCTTGCTCTTCTGAAGGCCCCAAGACCAGCTCCAGGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGACTTGTGCCAGGCTCTaGGCTCCTTTGTCACAGATG +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRTCARL*APLSQM
Trigger: CATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGT...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGCAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAACTTGTGCCAGGCTCTaGGCTCCTTTGTCACAGATG +
Preference number: 5 (lower is better)
Translates to: SRHLDASVPRSVLECRRETCARL*APLSQM
Trigger: CATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGT...TTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 90 bp CTGGACATCCATCACACGCAGGGACACCATGTCCGGAAGTACTTGTaGCAGGCTCTTGGCTCCTTTGTCACAGATGCAGTTATTGTACAA +
Preference number: 5 (lower is better)
Translates to: LDIHHTQGHHVRKYL*QALGSFVTDAVIVQ
Trigger: TTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGATGGATGTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 90 bp TCACACGCAGGGACACCATGTCCGGAAGTACTTGTGCCAGGCTCTTaGCTCCTTTGTCACAGATGCAGTTATTGTACAAGCTCAGCCTTA +
Preference number: 5 (lower is better)
Translates to: SHAGTPCPEVLVPGS*LLCHRCSYCTSSAL
Trigger: TAAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TTTCTCACCAGGCTGGCCCTGGTCTGGACAAGCAGGCACTTGGATGCTTCTGTTTCACAGATGCAGTTATaGTACAAGCTCAGCCTTAGG +
Preference number: 5 (lower is better)
Translates to: FLTRLALVWTSRHLDASVSQMQL*YKLSLR
Trigger: CCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGA...AACAGAAGCATCCAAGTGCCTGCTTGTCCAGACCAGGGCCAGCCTGGTGAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTACTTGTGCCAGGCTCTaGGCTCCTTTGTCACAGATG +
Preference number: 5 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFTCARL*APLSQM
Trigger: CATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAGAGTACAGCAGGGCAGCCGTGAACTTGTaGAACTGGACATCCATCACA +
Preference number: 5 (lower is better)
Translates to: RSSMVSVPRVHSCPEYSRAAVNL*NWTSIT
Trigger: TGTGATGGATGTCCAGTTCAACAAGTTCACGGCTGC...CCTGCTGTACTCTGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CAGGCACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGTACTGTGGCAGCTCCTaGTCTTTGATTTCATTGCAC +
Preference number: 5 (lower is better)
Translates to: QALGCFCSSFCPGVSKRRYCGSS*SLISLH
Trigger: GTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTA...CCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGTGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCAAGCTTCGACACACCCTaGTCTCCGATCTTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPSFDTP*SPILFS
Trigger: TGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCT...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp ACTTGGATGCTTCTGTTCCTCGTTCTGTCCTGGAGTGTCGAAGAGAAGGCCTTTAGCTTCGACACACCCTaGTCTCCGATCTTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: TWMLLFLVLSWSVEEKAFSFDTP*SPILFS
Trigger: TGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCT...AAAGGCCTTCTCTTCGACACTCCAGGACAGAACGAGGAACAGAAGCATCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp AGTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCGCAGCCGTGAACTTGTaGAACTGGACATCCATCACA +
Preference number: 5 (lower is better)
Translates to: STQFKVQHGQCSQSTFLSAAVNL*NWTSIT
Trigger: TGTGATGGATGTCCAGTTCAACAAGTTCACGGCTGC...GGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp CTCTTATGGGCTATGGCCCACAGAAAAGCTGAGTCCACAGTACCCAGTTCAAGGTACTGTGGCAGCTCCTaGTCTTTGATTTCATTGCAC +
Preference number: 5 (lower is better)
Translates to: LLWAMAHRKAESTVPSSRYCGSS*SLISLH
Trigger: GTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTA...CCTTGAACTGGGTACTGTGGACTCAGCTTTTCTGTGGGCCATAGCCCATAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp GTACCCAGTTCAAGGTCCAGCATGGTCAGTGTTCCCAGAGTACATTCTTGTCCATTGTCTTTGATTTCATaGCACTGTGCCAGCCACACA +
Preference number: 5 (lower is better)
Translates to: VPSSRSSMVSVPRVHSCPLSLIS*HCASHT
Trigger: TGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAA...TGGACAAGAATGTACTCTGGGAACACTGACCATGCTGGACCTTGAACTGGGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS-3UTR CAA 90 bp TGCAGGAGTAAGAACTTTTCACTGCATCTTTGGAAGCTACAAAGATCTTTGCAGCTTTCCTGGCTCTTGTaGCTGCCTCTTTCCAGCCTG +
Preference number: 5 (lower is better)
Translates to: CRSKNFSLHLWKLQRSLQLSWLL*LPLSSL
Trigger: CAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAG...CTGCAAAGATCTTTGTAGCTTCCAAAGATGCAGTGAAAAGTTCTTACTCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS CAA 90 bp CGCTCTGTCCAGTCGGGAGTGGCCAGCTCCCTTTCCTGGCTCTTGTaGCTGCCTCTTTCCAGCCTGGCCCGTACCAGCTCCACGGCCACC +
Preference number: 6 (lower is better)
Translates to: RSVQSGVASSLSWLL*LPLSSLARTSSTAT
Trigger: GGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAGAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp TGGCGCTCTGTCCAGTCGGGAGTGGCCAGCTCCCTTTCCTGGCTCTaGTTGCTGCCTCTTTCCAGCCTGGCCCGTACCAGCTCCACGGCC +
Preference number: 6 (lower is better)
Translates to: WRSVQSGVASSLSWL*LLPLSSLARTSSTA
Trigger: GGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAGAGCGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CGGGAGTGGCCAGCTCCCTTTCCTGGCTCTTGTTGCTaGCTCTTTCCAGCCTGGCCCGTACCAGCTCCACGG +
Preference number: 6 (lower is better)
Translates to: REWPAPFPGSCC*LFPAWPVPAPR
Trigger: CCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp CCCTTTCCTGGCTCTTGTTGCTGCCTCTTTCCAGCCTaGCCCGTACCAGCTCCACGGCCACCAGAGGACCCC +
Preference number: 6 (lower is better)
Translates to: PFPGSCCCLFPA*PVPAPRPPEDP
Trigger: GGGGTCCTCTGGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp CACCGTGGGCTAGCTGGCGCTCTGTCCAGTCGGGAGTaGCCAGCTCCCTTTCCTGGCTCTTGTTGCTGCCTC +
Preference number: 6 (lower is better)
Translates to: HRGLAGALSSRE*PAPFPGSCCCL
Trigger: GAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAGAGCGCCAGCTAGCCCACGGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp GGCTGTCTCCAAGGCCCTGCCCAGCACATACACATCTaGGGGTGTGAGCCGGGTGCCCAGGAAGGAGAGGTG +
Preference number: 6 (lower is better)
Translates to: GCLQGPAQHIHI*GCEPGAQEGEV
Trigger: CACCTCTCCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGTATGTGCTGGGCAGGGCCTTGGAGACAGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CTTGGTAGAGAAGCTGGGCACCTCAAAGATGGCATCTaGCTTGCTCAGGCTCTGAGCCAGGCGGCCCCGGGG +
Preference number: 6 (lower is better)
Translates to: LGREAGHLKDGI*LAQALSQAAPG
Trigger: CCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAGGTGCCCAGCTTCTCTACCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp CGCTCTGTCCAGTCGGGAGTGGCCAGCTCCCTTTCCTaGCTCTTGTTGCTGCCTCTTTCCAGCCTGGCCCGT +
Preference number: 6 (lower is better)
Translates to: RSVQSGVASSLS*LLLLPLSSLAR
Trigger: ACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGACAGAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp GTGAGGAGCAGTGTGCAGCCTCGCAGTAGCTTCCGCTaGAAGATCCCAGCCAGCAGTCCTCGGAGGGAGCAG +
Preference number: 6 (lower is better)
Translates to: VRSSVQPRSSFR*KIPASSPRREQ
Trigger: CTGCTCCCTCCGAGGACTGCTGGCTGGGATCTTCCAGCGGAAGCTACTGCGAGGCTGCACACTGCTCCTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp GTAGCTGGGCCTCTGTGCCCTGTTCTAGCAGGGCCTTaGAGAGCTGGCACACAGCCCTGCACACAACAGGGC +
Preference number: 6 (lower is better)
Translates to: VAGPLCPVLAGP*RAGTQPCTQQG
Trigger: GCCCTGTTGTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp TCCCATATCCCAGGTTGCTGTGTCTCGTGGGCACAGTaGAGCAGCTCCAGCAGCCTCCCTGCCCGGAGTGTC +
Preference number: 6 (lower is better)
Translates to: SHIPGCCVSWAQ*SSSSSLPARSV
Trigger: GACACTCCGGGCAGGGAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp GTCCAGTCGGGAGTGGCCAGCTCCCTTTCCTGGCTCTaGTTGCTGCCTCTTTCCAGCCTGGCCCGTACCAGC +
Preference number: 6 (lower is better)
Translates to: VQSGVASSLSWL*LLPLSSLARTS
Trigger: GCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACTGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp AGTCGGGAGTGGCCAGCTCCCTTTCCTGGCTCTTGTTaGTGCCTCTTTCCAGCCTGGCCCGTACCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: SREWPAPFPGSC*CLFPAWPVPAP
Trigger: TGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAAGGGAGCTGGCCACTCCCGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp ACACAGCCCTGCACACAACAGGGCTGTGACTATAGCTaGAGAGAAGAGGCTGGCCCTCCAGGAGGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: TQPCTQQGCDYS*REEAGPPGGPG
Trigger: CCCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCCCTGTTGTGTGCAGGGCTGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp AGCCGGGTGCCCAGGAAGGAGAGGTGGCCAGGGAGCTaGTGTGCAACATGCTCCCATATCCCAGGTTGCTGT +
Preference number: 6 (lower is better)
Translates to: SRVPRKERWPGS*CATCSHIPGCC
Trigger: ACAGCAACCTGGGATATGGGAGCATGTTGCACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 72 bp CGACCACCTGTGTCTCTCCTGGTCGCCTGCAGTCACTaGCAACCTGAAGTACCTCTGCCAGACCACCGTGGG +
Preference number: 6 (lower is better)
Translates to: RPPVSLLVACSH*QPEVPLPDHRG
Trigger: CCCACGGTGGTCTGGCAGAGGTACTTCAGGTTGTCAGTGACTGCAGGCGACCAGGAGAGACACAGGTGGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp GGGAGCTGGTGTGCAACATGCTCCCATATCCCAGGTTaGTGTGTCTCGTGGGCACAGTGGAGCAGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: GSWCATCSHIPG*CVSWAQWSSSS
Trigger: GCTGGAGCTGCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGGGAGCATGTTGCACACCAGCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp TGCTTTGGTGTCTTCGTCCCAGCTCCCAGGCCAGCTTaGCCAGCTCGACTAAGGCTCCGGGAGGACTGTTCT +
Preference number: 6 (lower is better)
Translates to: CFGVFVPAPRPA*PARLRLREDCS
Trigger: AGAACAGTCCTCCCGGAGCCTTAGTCGAGCTGGCCAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp CTCCATGGTCCCTGTAGCTGGTGCCCCTCTCTACCGTaGGAGCCTGCAGACTGTTGCAGACCCAGCTCAAGA +
Preference number: 6 (lower is better)
Translates to: LHGPCSWCPSLP*EPADCCRPSSR
Trigger: TCTTGAGCTGGGTCTGCAACAGTCTGCAGGCTCCCACGGTAGAGAGGGGCACCAGCTACAGGGACCATGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CAA 72 bp CTGGAGGCCAGTTGCTGGGCACCGGCAGCCGTGAACTaGTTGAACTGGACATCCATCACACGCAGGGACACC +
Preference number: 6 (lower is better)
Translates to: LEASCWAPAAVN*LNWTSITRRDT
Trigger: GGTGTCCCTGCGTGTGATGGATGTCCAGTTCAACAAGTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp ACGGCCACCAGAGGACCCCTTGGGCTCTGGGGCAATGCCTTGTATTaGTCCTGTAGGGAGTGCTGGAATCGCTCCACAGCCTCTGGCCAT +
Preference number: 6 (lower is better)
Translates to: TATRGPLGLWGNALY*SCRECWNRSTASGH
Trigger: ATGGCCAGAGGCTGTGGAGCGATTCCAGCACTCCCTACAGGACAAATACAAGGCATTGCCCCAGAGCCCAAGGGGTCCTCTGGTGGCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 72 bp TGTGTCTCTCCTGGTCGCCTGCAGTCACTGACAACCTaGAGTACCTCTGCCAGACCACCGTGGGCTAGCTGG +
Preference number: 6 (lower is better)
Translates to: CVSPGRLQSLTT*STSARPPWASW
Trigger: CCAGCTAGCCCACGGTGGTCTGGCAGAGGTACTTCAGGTTGTCAGTGACTGCAGGCGACCAGGAGAGACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 72 bp GTCCCGGATGGCAGGAAGATCCTTGGCTGCATCTTCTaGGGGGTTTCTCAGCCTCTGGGTCTGCACGAGACG +
Preference number: 6 (lower is better)
Translates to: VPDGRKILGCIF*GVSQPLGLHET
Trigger: CGTCTCGTGCAGACCCAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCATCCGGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CACACAGACTATGGTCTCCATGGTCCCTGTAGCTGGTaGCCCTCTCTACCGTGGGAGCCTGCAGACTGTTGC +
Preference number: 6 (lower is better)
Translates to: HTDYGLHGPCSW*PSLPWEPADCC
Trigger: GCAACAGTCTGCAGGCTCCCACGGTAGAGAGGGGCACCAGCTACAGGGACCATGGAGACCATAGTCTGTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CCA 72 bp AGCCTTGCCCAGCACAGCGACCACCTGTGTCTCTCCTaGTCGCCTGCAGTCACTGACAACCTGAAGTACCTC +
Preference number: 6 (lower is better)
Translates to: SLAQHSDHLCLS*SPAVTDNLKYL
Trigger: GAGGTACTTCAGGTTGTCAGTGACTGCAGGCGACCAGGAGAGACACAGGTGGTCGCTGTGCTGGGCAAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp CACGATATAATCAAGGACCTCGTCATCCATGGCCAGTaGCTGCAGGCTCGGGGGACAGAGCAGATCCCGCAG +
Preference number: 6 (lower is better)
Translates to: HDIIKDLVIHGQ*LQARGTEQIPQ
Trigger: CTGCGGGATCTGCTCTGTCCCCCGAGCCTGCAGCCACTGGCCATGGATGACGAGGTCCTTGATTATATCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp TGGCACACAGACTATGGTCTCCATGGTCCCTGTAGCTaGTGCCCCTCTCTACCGTGGGAGCCTGCAGACTGT +
Preference number: 6 (lower is better)
Translates to: WHTDYGLHGPCS*CPSLPWEPADC
Trigger: ACAGTCTGCAGGCTCCCACGGTAGAGAGGGGCACCAGCTACAGGGACCATGGAGACCATAGTCTGTGTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CCA 72 bp TCTGGAGATCCCAGATCCATGGTGGCACACAGACTATaGTCGCGGCTGTGGCTGTGCCCCGTGCTTCTGAGT +
Preference number: 6 (lower is better)
Translates to: SGDPRSMVAHRL*SRLWLCPVLLS
Trigger: ACTCAGAAGCACGGGGCACAGCCACAGCCGCGACCATAGTCTGTGTGCCACCATGGATCTGGGATCTCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230146.2
CDS CAA 72 bp AGGGAGCTGGTGTGCAACATGCTCCCATATCCCAGGTaGCTGTGTCTCGTGGGCACAGTGGAGCAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: RELVCNMLPYPR*LCLVGTVEQLQ
Trigger: CTGGAGCTGCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGGGAGCATGTTGCACACCAGCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp GAGGCCAGTTGCTGGGCACCGGCAGCCGTGAACTTGTaGAACTGGACATCCATCACACGCAGGGACACCATG +
Preference number: 6 (lower is better)
Translates to: EASCWAPAAVNL*NWTSITRRDTM
Trigger: CATGGTGTCCCTGCGTGTGATGGATGTCCAGTTCAACAAGTTCACGGCTGCCGGTGCCCAGCAACTGGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp GCCCTCTGGAGATCCCAGATCCATGGTGGCACACAGACTATGGTCTaGCAACTCCGGCAGGTAAGACCCAGAAGGGCCAGGAACCAGGCA +
Preference number: 6 (lower is better)
Translates to: ALWRSQIHGGTQTMV*QLRQVRPRRARNQA
Trigger: TGCCTGGTTCCTGGCCCTTCTGGGTCTTACCTGCCGGAGTTGCAAGACCATAGTCTGTGTGCCACCATGGATCTGGGATCTCCAGAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS TCA 72 bp GGAATCGCTCCACAGCCTCTGGCCATTTTGGAAGCTTaGTGGAAGACTCGGGACCCTCTTGGCATGGGGAGG +
Preference number: 6 (lower is better)
Translates to: GIAPQPLAILEA*WKTRDPLGMGR
Trigger: CCTCCCCATGCCAAGAGGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCCAGAGGCTGTGGAGCGATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp GAAATCTTCCGGGCCAGGGCATCACCATCAGGCTCATaGAGCAAGGCACAGTGGTATTCCCGTGAGAGCAGC +
Preference number: 6 (lower is better)
Translates to: EIFRARASPSGS*SKAQWYSRESS
Trigger: GCTGCTCTCACGGGAATACCACTGTGCCTTGCTGCATGAGCCTGATGGTGATGCCCTGGCCCGGAAGATTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CCA 72 bp CCAGGTAGCTGCCCTCTGGAGATCCCAGATCCATGGTaGCACACAGACTATGGTCTCCATGGTCCCTGTAGC +
Preference number: 6 (lower is better)
Translates to: PGSCPLEIPDPW*HTDYGLHGPCS
Trigger: GCTACAGGGACCATGGAGACCATAGTCTGTGTGCCACCATGGATCTGGGATCTCCAGAGGGCAGCTACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CAA 72 bp AGAGGACCCCTTGGGCTCTGGGGCAATGCCTTGTATTaGTCCTGTAGGGAGTGCTGGAATCGCTCCACAGCC +
Preference number: 6 (lower is better)
Translates to: RGPLGLWGNALY*SCRECWNRSTA
Trigger: GGCTGTGGAGCGATTCCAGCACTCCCTACAGGACAAATACAAGGCATTGCCCCAGAGCCCAAGGGGTCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp CCAGGTGTTGCAGAGAAGAGAAGGCTGGAAGGATCTTaGCCAGTGTGGGGAAAGCCTGGGGGCCCAAGATGG +
Preference number: 6 (lower is better)
Translates to: PGVAEKRRLEGS*PVWGKPGGPRW
Trigger: CCATCTTGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCTTCTCTTCTCTGCAACACCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 72 bp GAGGCCCAGGGCCTTGTCTTGGTTCCCCGCTGTCCCTaGGTTCTCAAAGTAGTGCCTCATGTAAGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: EAQGLVLVPRCP*VLKVVPHVSLG
Trigger: GCCAAGACTTACATGAGGCACTACTTTGAGAACTCAGGGACAGCGGGGAACCAAGACAAGGCCCTGGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 72 bp TTTTGGGACAAGTTGAGCGTCTCCAGGGCCTTCAGCTaGGGGAAGGTGGCTGAGAGCTTCGACACACCCTTG +
Preference number: 6 (lower is better)
Translates to: FWDKLSVSRAFS*GKVAESFDTPL
Trigger: CAAGGGTGTGTCGAAGCTCTCAGCCACCTTCCCTCAGCTGAAGGCCCTGGAGACGCTCAACTTGTCCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp GCTGCATCTTCTGAGGGGTTTCTCAGCCTCTGGGTCTaGACGAGACGATCCAGGTCTTCCACATCCTTTGGG +
Preference number: 6 (lower is better)
Translates to: AASSEGFLSLWV*TRRSRSSTSFG
Trigger: CCCAAAGGATGTGGAAGACCTGGATCGTCTCGTGCAGACCCAGAGGCTGAGAAACCCCTCAGAAGATGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp GGAGTGCTGGAATCGCTCCACAGCCTCTGGCCATTTTaGAAGCTTGATGGAAGACTCGGGACCCTCTTGGCA +
Preference number: 6 (lower is better)
Translates to: GVLESLHSLWPF*KLDGRLGTLLA
Trigger: TGCCAAGAGGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCCAGAGGCTGTGGAGCGATTCCAGCACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp AGGGCATCACCATCAGGCTCATGCAGCAAGGCACAGTaGTATTCCCGTGAGAGCAGCTCTTCTTCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: RASPSGSCSKAQ*YSRESSSSSSR
Trigger: CCTGCTGGAAGAAGAGCTGCTCTCACGGGAATACCACTGTGCCTTGCTGCATGAGCCTGATGGTGATGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230395.2
CDS CAA 72 bp AGATCCCAGATCCATGGTGGCACACAGACTATGGTCTaGCAACTCCGGCAGGTAAGACCCAGAAGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: RSQIHGGTQTMV*QLRQVRPRRAR
Trigger: CCTGGCCCTTCTGGGTCTTACCTGCCGGAGTTGCAAGACCATAGTCTGTGTGCCACCATGGATCTGGGATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023147.8
CDS CAA 72 bp CCTTCCTCTGCTCCAATGTGCTCTATGAAGAGGTCCTaGCTCAGGCCCTCGAGCTGGGTATCCTGGAACACG +
Preference number: 6 (lower is better)
Translates to: PSSAPMCSMKRS*LRPSSWVSWNT
Trigger: CGTGTTCCAGGATACCCAGCTCGAGGGCCTGAGCAAGGACCTCTTCATAGAGCACATTGGAGCAGAGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
ENSMUST00000230892.2
CDS CAA 72 bp TGGAATCGCTCCACAGCCTCTGGCCATTTTGGAAGCTaGATGGAAGACTCGGGACCCTCTTGGCATGGGGAG +
Preference number: 6 (lower is better)
Translates to: WNRSTASGHFGS*MEDSGPSWHGE
Trigger: CTCCCCATGCCAAGAGGGTCCCGAGTCTTCCATCAAGCTTCCAAAATGGCCAGAGGCTGTGGAGCGATTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp GGTCTCTTCTTCCTCGGAGTCAAGGCCAGGTACTGTGGCAGCTCCTaGTCTTTGATTTCATTGCACTGTGCCAGCCACACAGCACCCAGG +
Preference number: 6 (lower is better)
Translates to: GLFFLGVKARYCGSS*SLISLHCASHTAPR
Trigger: CCTGGGTGCTGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAAGAAGAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CAGAAGATTTCCAAAGCGTGGGCTACTGGAAGCTCCTaGTCGGTCATCTCTGGGGGCTCCTCTTCATCCACA +
Preference number: 6 (lower is better)
Translates to: QKISKAWATGSS*SVISGGSSSST
Trigger: TGTGGATGAAGAGGAGCCCCCAGAGATGACCGAGCAGGAGCTTCCAGTAGCCCACGCTTTGGAAATCTTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230392.2
CDS CAA 90 bp CAGAGCTTCTGCAAGCTTGCAGGCACCCACATCAGTGATGTTGTTTaGGGACAAGTTGAGCGTCTCCAGGGCCTTCAGCTGAGGGAAGGT +
Preference number: 6 (lower is better)
Translates to: QSFCKLAGTHISDVV*GQVERLQGLQLREG
Trigger: ACCTTCCCTCAGCTGAAGGCCCTGGAGACGCTCAACTTGTCCCAAAACAACATCACTGATGTGGGTGCCTGCAAGCTTGCAGAAGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS TCA 72 bp AGGAAACACTGTAGCAGAAAACTGGAGAAGGCCAGTTaGGCCTCCGTGGTCTCCAGGGTCTGCTGCATCAAG +
Preference number: 6 (lower is better)
Translates to: RKHCSRKLEKAS*ASVVSRVCCIK
Trigger: CTTGATGCAGCAGACCCTGGAGACCACGGAGGCTCAACTGGCCTTCTCCAGTTTTCTGCTACAGTGTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CTCTGGGGCAATGCCTTGTATTTGTCCTGTAGGGAGTaGTGGAATCGCTCCACAGCCTCTGGCCATTTTGGA +
Preference number: 6 (lower is better)
Translates to: LWGNALYLSCRE*WNRSTASGHFG
Trigger: TCCAAAATGGCCAGAGGCTGTGGAGCGATTCCAGCACTCCCTACAGGACAAATACAAGGCATTGCCCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CATCACACGCAGGGACACCATGTCCGGAAGTACTTGTaGCAGGCTCTTGGCTCCTTTGTCACAGATGCAGTT +
Preference number: 6 (lower is better)
Translates to: HHTQGHHVRKYL*QALGSFVTDAV
Trigger: AACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp GGCATCACTGTTAAGGAGTTCCAGGTAGCTGCCCTCTaGAGATCCCAGATCCATGGTGGCACACAGACTATG +
Preference number: 6 (lower is better)
Translates to: GITVKEFQVAAL*RSQIHGGTQTM
Trigger: CATAGTCTGTGTGCCACCATGGATCTGGGATCTCCAGAGGGCAGCTACCTGGAACTCCTTAACAGTGATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
CDS CCA 72 bp TGGAAGCTTGATGGAAGACTCGGGACCCTCTTGGCATaGGGAGGGAGATGTGTCCTCTGTCTCATTTACACG +
Preference number: 6 (lower is better)
Translates to: WKLDGRLGTLLA*GGRCVLCLIYT
Trigger: CGTGTAAATGAGACAGAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCCGAGTCTTCCATCAAGCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp TGGGGCAATGCCTTGTATTTGTCCTGTAGGGAGTGCTaGAATCGCTCCACAGCCTCTGGCCATTTTGGAAGC +
Preference number: 6 (lower is better)
Translates to: WGNALYLSCREC*NRSTASGHFGS
Trigger: GCTTCCAAAATGGCCAGAGGCTGTGGAGCGATTCCAGCACTCCCTACAGGACAAATACAAGGCATTGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp TGCAGTTATTGTACAAGCTCAGCCTTAGGAGGGACTTaGCTAGGGCTGGCAGAGCTTCTGCAAGCTTGCAGG +
Preference number: 6 (lower is better)
Translates to: CSYCTSSALGGT*LGLAELLQACR
Trigger: CCTGCAAGCTTGCAGAAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp TCTAGCTTCTTAAGGTCCCGGATGGCAGGAAGATCCTaGGCTGCATCTTCTGAGGGGTTTCTCAGCCTCTGG +
Preference number: 6 (lower is better)
Translates to: SSFLRSRMAGRS*AASSEGFLSLW
Trigger: CCAGAGGCTGAGAAACCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCATCCGGGACCTTAAGAAGCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp GTGGCTGAGAGCTTCGACACACCCTTGTCTCCGATCTaGTTCTCACTAAGTGAGTCCAGGTCCAGGTGTTGC +
Preference number: 6 (lower is better)
Translates to: VAESFDTPLSPI*FSLSESRSRCC
Trigger: GCAACACCTGGACCTGGACTCACTTAGTGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCTCTCAGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp TGCAAGCTTGCAGGCACCCACATCAGTGATGTTGTTTaGGGACAAGTTGAGCGTCTCCAGGGCCTTCAGCTG +
Preference number: 6 (lower is better)
Translates to: CKLAGTHISDVV*GQVERLQGLQL
Trigger: CAGCTGAAGGCCCTGGAGACGCTCAACTTGTCCCAAAACAACATCACTGATGTGGGTGCCTGCAAGCTTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp GCTTCTGCAAGCTTGCAGGCACCCACATCAGTGATGTaGTTTTGGGACAAGTTGAGCGTCTCCAGGGCCTTC +
Preference number: 6 (lower is better)
Translates to: ASASLQAPTSVM*FWDKLSVSRAF
Trigger: GAAGGCCCTGGAGACGCTCAACTTGTCCCAAAACAACATCACTGATGTGGGTGCCTGCAAGCTTGCAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp ATCCATCACACGCAGGGACACCATGTCCGGAAGTACTaGTGCCAGGCTCTTGGCTCCTTTGTCACAGATGCA +
Preference number: 6 (lower is better)
Translates to: IHHTQGHHVRKY*CQALGSFVTDA
Trigger: TGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGATGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp TGGGTCTGCACGAGACGATCCAGGTCTTCCACATCCTTTGGGGATTaGGCTTTAAATGGCTCAATGGTGAACTTCTCCTCTGCCGCCTGG +
Preference number: 6 (lower is better)
Translates to: WVCTRRSRSSTSFGD*ALNGSMVNFSSAAW
Trigger: CCAGGCGGCAGAGGAGAAGTTCACCATTGAGCCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGACCTGGATCGTCTCGTGCAGACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp TCTATGTTCTCACCAAAGCCTTCCTCTGCTCCAATGTaGTCTATGAAGAGGTCCTTGCTCAGGCCCTCGAGC +
Preference number: 6 (lower is better)
Translates to: SMFSPKPSSAPM*SMKRSLLRPSS
Trigger: GCTCGAGGGCCTGAGCAAGGACCTCTTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGTGAGAACATAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp CTCTTCCGGGAAGCGTCTCTTCTGAGGCTTCTGTCCTaGTTCTACAGGGATCTCTATGTTCTCACCAAAGCC +
Preference number: 6 (lower is better)
Translates to: LFREASLLRLLS*FYRDLYVLTKA
Trigger: GGCTTTGGTGAGAACATAGAGATCCCTGTAGAAGCAGGACAGAAGCCTCAGAAGAGACGCTTCCCGGAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp GGGTCTCTTCTTCCTCGGAGTCAAGGCCAGGTACTGTaGCAGCTCCTTGTCTTTGATTTCATTGCACTGTGC +
Preference number: 6 (lower is better)
Translates to: GSLLPRSQGQVL*QLLVFDFIALC
Trigger: GCACAGTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAAGAAGAGACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp TCCATGTCCTGCAACAGCTTGCTGAACTGGTCGCAGTaGATGGTATCTGTGTCTGGCTCTGAGCTGAGTTCG +
Preference number: 6 (lower is better)
Translates to: SMSCNSLLNWSQ*MVSVSGSELSS
Trigger: CGAACTCAGCTCAGAGCCAGACACAGATACCATCAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACATGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
ENSMUST00000230892.2
CDS CAA 72 bp TTCCTCGGAGTCAAGGCCAGGTACTGTGGCAGCTCCTaGTCTTTGATTTCATTGCACTGTGCCAGCCACACA +
Preference number: 6 (lower is better)
Translates to: FLGVKARYCGSS*SLISLHCASHT
Trigger: TGTGTGGCTGGCACAGTGCAATGAAATCAAAGACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp GCCAGGCTCTTGGCTCCTTTGTCACAGATGCAGTTATaGTACAAGCTCAGCCTTAGGAGGGACTTGGCTAGG +
Preference number: 6 (lower is better)
Translates to: ARLLAPLSQMQL*YKLSLRRDLAR
Trigger: CCTAGCCAAGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp TCATCCAGTTCCATGTCCTGCAACAGCTTGCTGAACTGGTCGCAGTaGATGGTATCTGTGTCTGGCTCTGAGCTGAGTTCGATCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SSSSMSCNSLLNWSQ*MVSVSGSELSSISS
Trigger: GGAGGAGATCGAACTCAGCTCAGAGCCAGACACAGATACCATCAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGATGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
ENSMUST00000230892.2
CDS CAA 90 bp AGTACTTGTGCCAGGCTCTTGGCTCCTTTGTCACAGATGCAGTTATaGTACAAGCTCAGCCTTAGGAGGGACTTGGCTAGGGCTGGCAGA +
Preference number: 6 (lower is better)
Translates to: STCARLLAPLSQMQL*YKLSLRRDLARAGR
Trigger: TCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp AGGGACACCATGTCCGGAAGTACTTGTGCCAGGCTCTTGGCTCCTTaGTCACAGATGCAGTTATTGTACAAGCTCAGCCTTAGGAGGGAC +
Preference number: 6 (lower is better)
Translates to: RDTMSGSTCARLLAP*SQMQLLYKLSLRRD
Trigger: GTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp ATCACACGCAGGGACACCATGTCCGGAAGTACTTGTGCCAGGCTCTaGGCTCCTTTGTCACAGATGCAGTTATTGTACAAGCTCAGCCTT +
Preference number: 6 (lower is better)
Translates to: ITRRDTMSGSTCARL*APLSQMQLLYKLSL
Trigger: AAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 90 bp GAACTGGACATCCATCACACGCAGGGACACCATGTCCGGAAGTACTaGTGCCAGGCTCTTGGCTCCTTTGTCACAGATGCAGTTATTGTA +
Preference number: 6 (lower is better)
Translates to: ELDIHHTQGHHVRKY*CQALGSFVTDAVIV
Trigger: TACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGATGGATGTCCAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CCA 72 bp CAGGTCTTCCACATCCTTTGGGGATTTGGCTTTAAATaGCTCAATGGTGAACTTCTCCTCTGCCGCCTGGAG +
Preference number: 6 (lower is better)
Translates to: QVFHILWGFGFK*LNGELLLCRLE
Trigger: CTCCAGGCGGCAGAGGAGAAGTTCACCATTGAGCCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp CGGGTCTCTTCATCCAGTTCCATGTCCTGCAACAGCTaGCTGAACTGGTCGCAGTTGATGGTATCTGTGTCT +
Preference number: 6 (lower is better)
Translates to: RVSSSSSMSCNS*LNWSQLMVSVS
Trigger: AGACACAGATACCATCAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGATGAAGAGACCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
ENSMUST00000230892.2
CDS GCA 72 bp GTACTTGTGCCAGGCTCTTGGCTCCTTTGTCACAGATaGAGTTATTGTACAAGCTCAGCCTTAGGAGGGACT +
Preference number: 6 (lower is better)
Translates to: VLVPGSWLLCHR*SYCTSSALGGT
Trigger: AGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp AGGGACACCATGTCCGGAAGTACTTGTGCCAGGCTCTaGGCTCCTTTGTCACAGATGCAGTTATTGTACAAG +
Preference number: 6 (lower is better)
Translates to: RDTMSGSTCARL*APLSQMQLLYK
Trigger: CTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS GCA 72 bp TACAGGGATCTCTATGTTCTCACCAAAGCCTTCCTCTaGTCCAATGTGCTCTATGAAGAGGTCCTTGCTCAG +
Preference number: 6 (lower is better)
Translates to: YRDLYVLTKAFL*SNVLYEEVLAQ
Trigger: CTGAGCAAGGACCTCTTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGTGAGAACATAGAGATCCCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2
CDS CAA 72 bp ATGTCCGGAAGTACTTGTGCCAGGCTCTTGGCTCCTTaGTCACAGATGCAGTTATTGTACAAGCTCAGCCTT +
Preference number: 6 (lower is better)
Translates to: MSGSTCARLLAP*SQMQLLYKLSL
Trigger: AAGGCTGAGCTTGTACAATAACTGCATCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023147.8
ENSMUST00000230146.2
ENSMUST00000230395.2
ENSMUST00000230450.2