Pregenerated sensors for CIDEB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022219Ensembl transcript IDs: ENSMUST00000001497.9
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATGTACAGGCCAGAGGAACAAGGCAGTGTGCAGATCTGTTAGGATaGAGTCAGCTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCT | + |
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Preference number: 1 (lower is better) Translates to: DVQARGTRQCADLLG*SQLGYLGYTADPKP Trigger: AGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAGCTGACTCCATCCTAACAGATCTGCACACTGCCTTGTTCCTCTGGCCTGTACATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| 3UTR TCA 90 bp | ATGGAGTCAGCTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCTaGTGGTGCCTTTACTACCCTCCTGTGTCACATGGAACCAGTCTT | + |
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Preference number: 1 (lower is better) Translates to: MESAWLPRVHCRPQA*WCLYYPPVSHGTSL Trigger: AAGACTGGTTCCATGTGACACAGGAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAGCTGACTCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTTAGGGGTAGGCGTCAGACGGTGGGATCAGGATaGAGGGGACAAGGCTGTGGT | + |
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Preference number: 2 (lower is better) Translates to: VKLGTVAVGMQDLRGRRQTVGSG*RGQGCG Trigger: ACCACAGCCTTGTCCCCTGCATCCTGATCCCACCGT...CTGACGCCTACCCCTAAGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| 3UTR-3UTR CCA 90 bp | GTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTTAGGGGTAGGCGTCAGCCCTCCTGTGTCACATaGAACCAGTCTTTCAGCACA | + |
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Preference number: 2 (lower is better) Translates to: VKLGTVAVGMQDLRGRRQPSCVT*NQSFST Trigger: TGTGCTGAAAGACTGGTTCCATGTGACACAGGAGGG...CTGACGCCTACCCCTAAGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| 3UTR TCA 72 bp | GCTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCTaGTGGTGCCTTTACTACCCTCCTGTGTCACATGGA | + |
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Preference number: 3 (lower is better) Translates to: AWLPRVHCRPQA*WCLYYPPVSHG Trigger: TCCATGTGACACAGGAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTTAGGGGTAGGCGTCAGGCCCCCTCCACCACATaGCGAAGGGTGGAGGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: VKLGTVAVGMQDLRGRRQAPSTT*RRVEEM Trigger: CATCTCCTCCACCCTTCGCCATGTGGTGGAGGGGGC...CTGACGCCTACCCCTAAGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTTAGGGGTAGGCGTCAGATGCCCAGCAGCATATaGCCCAGGCCTTGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VKLGTVAVGMQDLRGRRQMPSSI*PRPCSS Trigger: GCTGCTGCAAGGCCTGGGCCATATGCTGCTGGGCAT...CTGACGCCTACCCCTAAGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GGTTACCTAGGGTACACTGCAGACCCCAAGCCTGATGGTGCCTTTACTACCCTCCCACATGGCGAAGGGTaGAGGAGATGCCCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GYLGYTADPKPDGAFTTLPHGEG*RRCPAA Trigger: TGCTGCTGGGCATCTCCTCCACCCTTCGCCATGTGG...GAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAGTGTACCCTAGGTAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR TCA 90 bp | CTGTTAGGATGGAGTCAGCTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCTCTGAGGTGGAGGAGCTaGGTTCCAGACCCTACGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LLGWSQLGYLGYTADPKPLRWRS*VPDPTA Trigger: AGCCGTAGGGTCTGGAACTCAGCTCCTCCACCTCAG...AGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAGCTGACTCCATCCTAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR TCA 90 bp | GAAGGCAGGAGTGGAGGGAAGACAGGTAGCATTCTTCAGGAAGATGTACAGGCCACACGGAAGGGTCGCTaGGGTGGAGGAGCTGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: EGRSGGKTGSILQEDVQATRKGR*GGGAEF Trigger: GAACTCAGCTCCTCCACCTCAGCGACCCTTCCGTGT...GGCCTGTACATCTTCCTGAAGAATGCTACCTGTCTTCCCTCCACTCCTGCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR TCA 90 bp | GGTTACCTAGGGTACACTGCAGACCCCAAGCCTGATGGTGCCTTTACTACCCTCGCAGGCCATTGGGGTTaGAGGCTGAAAGGTACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GYLGYTADPKPDGAFTTLAGHWG*RLKGTP Trigger: TGGAGTACCTTTCAGCCTTCAACCCCAATGGCCTGC...GAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAGTGTACCCTAGGTAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR TCA 90 bp | CTGCAGACCCCAAGCCTGATGGTGCCTTTACTACCCTCCTGTGTCACATGGAACCGGACTGTCCGCTTATaGTCACAGACACGGAAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: LQTPSLMVPLLPSCVTWNRTVRL*SQTRKG Trigger: ACCCTTCCGTGTCTGTGATCATAAGCGGACAGTCCG...GTTCCATGTGACACAGGAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR TCA 90 bp | CTGCAGACCCCAAGCCTGATGGTGCCTTTACTACCCTCCTGTGTCACATGGAACTGTACACATCGAAGGTaGTGCGGGCGATGTCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LQTPSLMVPLLPSCVTWNCTHRR*CGRCPC Trigger: GCAAGGACATCGCCCGCATCACCTTCGATGTGTACA...GTTCCATGTGACACAGGAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR GCA 90 bp | CTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCTGATGGTGCCTTTACTACCCTCCAGCTCTGGCCCTaGTCAAGCACCATCAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: LGYLGYTADPKPDGAFTTLQLWP*SSTIKH Trigger: GTGCTTGATGGTGCTTGAGCAGGGCCAGAGCTGGAG...GGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR GCA 90 bp | GTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTTAGGGGTAGGCGTCAGATATGGCCCAGGCCTTaGAGCAGCGAGGAAGTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: VKLGTVAVGMQDLRGRRQIWPRP*SSEEVQ Trigger: TTGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATAT...CTGACGCCTACCCCTAAGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GGGAAGACAGGTAGCATTCTTCAGGAAGATGTACAGGCCAGAGGAACAAGGCAGTTGGGGCTCCAGCTCTaGCCCTGCTCAAGCACCATC | + |
|
Preference number: 4 (lower is better) Translates to: GKTGSILQEDVQARGTRQLGLQL*PCSSTI Trigger: GATGGTGCTTGAGCAGGGCCAGAGCTGGAGCCCCAA...CTGCCTTGTTCCTCTGGCCTGTACATCTTCCTGAAGAATGCTACCTGTCTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR GCA 90 bp | CTGTTAGGATGGAGTCAGCTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCTTGCGGGCGATGTCCTTaGTGTGTTTTGGCTTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LLGWSQLGYLGYTADPKPCGRCP*CVLASP Trigger: GGGAGAAGCCAAAACACAGCAAGGACATCGCCCGCA...AGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAGCTGACTCCATCCTAACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GGTTACCTAGGGTACACTGCAGACCCCAAGCCTGATGGTGCCTTTACTACCCTCACTCCGAGCTCACAGTaGATACTGACCTTAGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GYLGYTADPKPDGAFTTLTPSSQ*ILTLAG Trigger: GCCTGCTAAGGTCAGTATCCACTGTGAGCTCGGAGT...GAGGGTAGTAAAGGCACCATCAGGCTTGGGGTCTGCAGTGTACCCTAGGTAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | CTGTTAGGATGGAGTCAGCTTGGTTACCTAGGGTACACTGCAGACCCCAAGCCTGCAGTTCTTGGAGGCTaGCAGCTGTCAGTCCTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LLGWSQLGYLGYTADPKPAVLGG*QLSVLS Trigger: GGAAAGGACTGACAGCTGCCAGCCTCCAAGAACTGC...AGGCTTGGGGTCTGCAGTGTACCCTAGGTAACCAAGCTGACTCCATCCTAACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GGGAAGACAGGTAGCATTCTTCAGGAAGATGTACAGGCCAGAGGAACAAGGCAGTCGTCCTCCAGCAGCTaGAAGAAGTCCTCACTGTCC | + |
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Preference number: 4 (lower is better) Translates to: GKTGSILQEDVQARGTRQSSSSS*KKSSLS Trigger: GGACAGTGAGGACTTCTTCCAGCTGCTGGAGGACGA...CTGCCTTGTTCCTCTGGCCTGTACATCTTCCTGAAGAATGCTACCTGTCTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGGAGTGGAGGGAAGACAGGTAGCATTCTTCAGGAAGATGTACAGGCCAGGTCTCGGGGATTTTaGTTGTACACATCGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: EGRSGGKTGSILQEDVQARSRGF*LYTSKV Trigger: CACCTTCGATGTGTACAAGCAAAATCCCCGAGACCT...GGCCTGTACATCTTCCTGAAGAATGCTACCTGTCTTCCCTCCACTCCTGCCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | CCCTCCTGTGTCACATGGAACCAGTCTTTCAGCACAGGCTCAAAGCATGATCTCTTATCTAGCAGTTCTTaGAGGCTGGCAGCTGTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: PSCVTWNQSFSTGSKHDLLSSSS*RLAAVS Trigger: ACTGACAGCTGCCAGCCTCCAAGAACTGCTAGATAA...GAGATCATGCTTTGAGCCTGTGCTGAAAGACTGGTTCCATGTGACACAGGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GAAGGCAGGAGTGGAGGGAAGACAGGTAGCATTCTTCAGGAAGATGTACAGGCCGGAAATCACAGCTCATaGAGTAGAGTCCATAGAATG | + |
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Preference number: 4 (lower is better) Translates to: EGRSGGKTGSILQEDVQAGNHSS*SRVHRM Trigger: CATTCTATGGACTCTACTCCATGAGCTGTGATTTCC...GGCCTGTACATCTTCCTGAAGAATGCTACCTGTCTTCCCTCCACTCCTGCCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CCA 90 bp | GGAAAGTTATCTTGTAGTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTTTAGGGCCAACTCCTTaGAAATCACAGCTCATGGAG | + |
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Preference number: 4 (lower is better) Translates to: GKLSCSKARDSGRWYAGSLGPTP*KSQLME Trigger: CTCCATGAGCTGTGATTTCCAAGGAGTTGGCCCTAA...AGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTACTACAAGATAACTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 90 bp | CCCTCCACCACATGGCGAAGGGTGGAGGAGATGCCCAGCAGCATATaGCCCAGGCCTTGCAGCAGCGAGGAAGTCCAACGGAGGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: PSTTWRRVEEMPSSI*PRPCSSEEVQRRSS Trigger: GGAGCTCCTCCGTTGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCATGTGGTGGAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 90 bp | TGTCTCTGCCCGTGCCACTGCCATCGATCAGCCCCCTCCACCACATaGCGAAGGGTGGAGGAGATGCCCAGCAGCATATGGCCCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: CLCPCHCHRSAPSTT*RRVEEMPSSIWPRP Trigger: AGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCATGTGGTGGAGGGGGCTGATCGATGGCAGTGGCACGGGCAGAGACA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS GCA 90 bp | TGGCGAAGGGTGGAGGAGATGCCCAGCAGCATATGGCCCAGGCCTTaGAGCAGCGAGGAAGTCCAACGGAGGAGCTCCCTGAGTACTCTT | + |
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Preference number: 5 (lower is better) Translates to: WRRVEEMPSSIWPRP*SSEEVQRRSSLSTL Trigger: AAGAGTACTCAGGGAGCTCCTCCGTTGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS GCA 90 bp | AGGCCGTATGACAACATCCCACTCTTGGGGCTCCAGCTCTGGCCCTaGTCAAGCACCATCAAGCACGTGTCGTCCTCCAGCAGCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: RPYDNIPLLGLQLWP*SSTIKHVSSSSSWK Trigger: CTTCCAGCTGCTGGAGGACGACACGTGCTTGATGGTGCTTGAGCAGGGCCAGAGCTGGAGCCCCAAGAGTGGGATGTTGTCATACGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 90 bp | GTAGCAGCAAGGTCTCCAGGACCTTATCTAGCAGTTCTTGGAGGCTaGCAGCTGTCAGTCCTTTCCGGACTGTCCGCTTATGATCACAGA | + |
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Preference number: 5 (lower is better) Translates to: VAARSPGPYLAVLGG*QLSVLSGLSAYDHR Trigger: TCTGTGATCATAAGCGGACAGTCCGGAAAGGACTGACAGCTGCCAGCCTCCAAGAACTGCTAGATAAGGTCCTGGAGACCTTGCTGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CAA 90 bp | TGGAAGGCAGGAGTGGAGGGAAGACAGGTAGCATTCTTCAGGAAGATGTACAGGTGTCCTTGCTGTGTTTaGGCTTCTCCCGTCCTAGGC | + |
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Preference number: 5 (lower is better) Translates to: WKAGVEGRQVAFFRKMYRCPCCV*ASPVLG Trigger: GCCTAGGACGGGAGAAGCCAAAACACAGCAAGGACA...CCTGTACATCTTCCTGAAGAATGCTACCTGTCTTCCCTCCACTCCTGCCTTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CAA 90 bp | GGAAAGTTATCTTGTAGTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTCATATGGCCCAGGCCTaGCAGCAGCGAGGAAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: GKLSCSKARDSGRWYAGSHMAQA*QQRGSP Trigger: TGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATATG...AGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTACTACAAGATAACTTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS GCA 90 bp | AATGTAGCTTTCACGTTGAGGCTGCCAAAGAGGTCTCGGGGATTTTaGTTGTACACATCGAAGGTGATGCGGGCGATGTCCTTGCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: NVAFTLRLPKRSRGF*LYTSKVMRAMSLLC Trigger: ACACAGCAAGGACATCGCCCGCATCACCTTCGATGTGTACAAGCAAAATCCCCGAGACCTCTTTGGCAGCCTCAACGTGAAAGCTACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CAA 90 bp | GGAAAGTTATCTTGTAGTAAAGCTAGGGACAGTGGCCGTTGGTATGCAGGATCTATGCGGGCGATGTCCTaGCTGTGTTTTGGCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GKLSCSKARDSGRWYAGSMRAMS*LCFGFS Trigger: GGAGAAGCCAAAACACAGCAAGGACATCGCCCGCAT...AGATCCTGCATACCAACGGCCACTGTCCCTAGCTTTACTACAAGATAACTTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CAA 90 bp | CCCTCCTGTGTCACATGGAACCAGTCTTTCAGCACAGGCTCAAAGCATGATCTCAATGTAGCTTTCACGTaGAGGCTGCCAAAGAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: PSCVTWNQSFSTGSKHDLNVAFT*RLPKRS Trigger: AGACCTCTTTGGCAGCCTCAACGTGAAAGCTACATT...GAGATCATGCTTTGAGCCTGTGCTGAAAGACTGGTTCCATGTGACACAGGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS-3UTR CAA 90 bp | CCCTCCTGTGTCACATGGAACCAGTCTTTCAGCACAGGCTCAAAGCATGATCTCTTTAGGGCCAACTCCTaGGAAATCACAGCTCATGGA | + |
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Preference number: 5 (lower is better) Translates to: PSCVTWNQSFSTGSKHDLFRANS*EITAHG Trigger: TCCATGAGCTGTGATTTCCAAGGAGTTGGCCCTAAA...GAGATCATGCTTTGAGCCTGTGCTGAAAGACTGGTTCCATGTGACACAGGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS GCA 72 bp | GTGGAGGAGATGCCCAGCAGCATATGGCCCAGGCCTTaGAGCAGCGAGGAAGTCCAACGGAGGAGCTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: VEEMPSSIWPRP*SSEEVQRRSSL Trigger: CAGGGAGCTCCTCCGTTGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 72 bp | GCCATCGATCAGCCCCCTCCACCACATGGCGAAGGGTaGAGGAGATGCCCAGCAGCATATGGCCCAGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: AIDQPPPPHGEG*RRCPAAYGPGL Trigger: AAGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCATGTGGTGGAGGGGGCTGATCGATGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 72 bp | CCGTGCCACTGCCATCGATCAGCCCCCTCCACCACATaGCGAAGGGTGGAGGAGATGCCCAGCAGCATATGG | + |
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Preference number: 6 (lower is better) Translates to: PCHCHRSAPSTT*RRVEEMPSSIW Trigger: CCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCATGTGGTGGAGGGGGCTGATCGATGGCAGTGGCACGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 72 bp | GGTGGAGGAGATGCCCAGCAGCATATGGCCCAGGCCTaGCAGCAGCGAGGAAGTCCAACGGAGGAGCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: GGGDAQQHMAQA*QQRGSPTEELP Trigger: AGGGAGCTCCTCCGTTGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 90 bp | ATGGCGAAGGGTGGAGGAGATGCCCAGCAGCATATGGCCCAGGCCTaGCAGCAGCGAGGAAGTCCAACGGAGGAGCTCCCTGAGTACTCT | + |
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Preference number: 6 (lower is better) Translates to: MAKGGGDAQQHMAQA*QQRGSPTEELPEYS Trigger: AGAGTACTCAGGGAGCTCCTCCGTTGGACTTCCTCGCTGCTGCAAGGCCTGGGCCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS GCA 72 bp | GACAACATCCCACTCTTGGGGCTCCAGCTCTGGCCCTaGTCAAGCACCATCAAGCACGTGTCGTCCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: DNIPLLGLQLWP*SSTIKHVSSSS Trigger: GCTGGAGGACGACACGTGCTTGATGGTGCTTGAGCAGGGCCAGAGCTGGAGCCCCAAGAGTGGGATGTTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 72 bp | TTCTCCCGTCCTAGGCCGTATGACAACATCCCACTCTaGGGGCTCCAGCTCTGGCCCTGCTCAAGCACCATC | + |
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Preference number: 6 (lower is better) Translates to: FSRPRPYDNIPL*GLQLWPCSSTI Trigger: GATGGTGCTTGAGCAGGGCCAGAGCTGGAGCCCCAAGAGTGGGATGTTGTCATACGGCCTAGGACGGGAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 90 bp | TGTTTTGGCTTCTCCCGTCCTAGGCCGTATGACAACATCCCACTCTaGGGGCTCCAGCTCTGGCCCTGCTCAAGCACCATCAAGCACGTG | + |
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Preference number: 6 (lower is better) Translates to: CFGFSRPRPYDNIPL*GLQLWPCSSTIKHV Trigger: CACGTGCTTGATGGTGCTTGAGCAGGGCCAGAGCTGGAGCCCCAAGAGTGGGATGTTGTCATACGGCCTAGGACGGGAGAAGCCAAAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 72 bp | TCAAGCACCATCAAGCACGTGTCGTCCTCCAGCAGCTaGAAGAAGTCCTCACTGTCCACAGCAGTCCCATCC | + |
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Preference number: 6 (lower is better) Translates to: SSTIKHVSSSSS*KKSSLSTAVPS Trigger: GGATGGGACTGCTGTGGACAGTGAGGACTTCTTCCAGCTGCTGGAGGACGACACGTGCTTGATGGTGCTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 72 bp | AGCAGCAAGGTCTCCAGGACCTTATCTAGCAGTTCTTaGAGGCTGGCAGCTGTCAGTCCTTTCCGGACTGTC | + |
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Preference number: 6 (lower is better) Translates to: SSKVSRTLSSSS*RLAAVSPFRTV Trigger: GACAGTCCGGAAAGGACTGACAGCTGCCAGCCTCCAAGAACTGCTAGATAAGGTCCTGGAGACCTTGCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS GCA 72 bp | TTCACGTTGAGGCTGCCAAAGAGGTCTCGGGGATTTTaGTTGTACACATCGAAGGTGATGCGGGCGATGTCC | + |
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Preference number: 6 (lower is better) Translates to: FTLRLPKRSRGF*LYTSKVMRAMS Trigger: GGACATCGCCCGCATCACCTTCGATGTGTACAAGCAAAATCCCCGAGACCTCTTTGGCAGCCTCAACGTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CCA 72 bp | AGGTCTCCAGGACCTTATCTAGCAGTTCTTGGAGGCTaGCAGCTGTCAGTCCTTTCCGGACTGTCCGCTTAT | + |
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Preference number: 6 (lower is better) Translates to: RSPGPYLAVLGG*QLSVLSGLSAY Trigger: ATAAGCGGACAGTCCGGAAAGGACTGACAGCTGCCAGCCTCCAAGAACTGCTAGATAAGGTCCTGGAGACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 72 bp | TGCTTGTACACATCGAAGGTGATGCGGGCGATGTCCTaGCTGTGTTTTGGCTTCTCCCGTCCTAGGCCGTAT | + |
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Preference number: 6 (lower is better) Translates to: CLYTSKVMRAMS*LCFGFSRPRPY Trigger: ATACGGCCTAGGACGGGAGAAGCCAAAACACAGCAAGGACATCGCCCGCATCACCTTCGATGTGTACAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 72 bp | ACGTTGAGGCTGCCAAAGAGGTCTCGGGGATTTTGCTaGTACACATCGAAGGTGATGCGGGCGATGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: TLRLPKRSRGFC*YTSKVMRAMSL Trigger: CAAGGACATCGCCCGCATCACCTTCGATGTGTACAAGCAAAATCCCCGAGACCTCTTTGGCAGCCTCAACGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 72 bp | TTTCACGTTGAGGCTGCCAAAGAGGTCTCGGGGATTTaGCTTGTACACATCGAAGGTGATGCGGGCGATGTC | + |
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Preference number: 6 (lower is better) Translates to: FHVEAAKEVSGI*LVHIEGDAGDV Trigger: GACATCGCCCGCATCACCTTCGATGTGTACAAGCAAAATCCCCGAGACCTCTTTGGCAGCCTCAACGTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 90 bp | GAATGTAGCTTTCACGTTGAGGCTGCCAAAGAGGTCTCGGGGATTTaGCTTGTACACATCGAAGGTGATGCGGGCGATGTCCTTGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: ECSFHVEAAKEVSGI*LVHIEGDAGDVLAV Trigger: CACAGCAAGGACATCGCCCGCATCACCTTCGATGTGTACAAGCAAAATCCCCGAGACCTCTTTGGCAGCCTCAACGTGAAAGCTACATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 90 bp | GTAGCTTTCACGTTGAGGCTGCCAAAGAGGTCTCGGGGATTTTGCTaGTACACATCGAAGGTGATGCGGGCGATGTCCTTGCTGTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: VAFTLRLPKRSRGFC*YTSKVMRAMSLLCF Trigger: AAAACACAGCAAGGACATCGCCCGCATCACCTTCGATGTGTACAAGCAAAATCCCCGAGACCTCTTTGGCAGCCTCAACGTGAAAGCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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| CDS CAA 72 bp | GAGGAGCTCCCTGAGTACTCTTTTAGGGCCAACTCCTaGGAAATCACAGCTCATGGAGTAGAGTCCATAGAA | + |
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Preference number: 6 (lower is better) Translates to: EELPEYSFRANS*EITAHGVESIE Trigger: TTCTATGGACTCTACTCCATGAGCTGTGATTTCCAAGGAGTTGGCCCTAAAAGAGTACTCAGGGAGCTCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001497.9 |
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