RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CIDEA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024526

Ensembl transcript IDs: ENSMUST00000025404.10

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CCGCCTTTCCTTTGCAGGAATCCTGCTACTCAGCCCTaGACTGGGTACCACCCCCAAGCCCCCATTCCTTCC +
Preference number: 3 (lower is better)
Translates to: PPFLCRNPATQP*TGYHPQAPIPS
Trigger: GGAAGGAATGGGGGCTTGGGGGTGGTACCCAGTGCAGGGCTGAGTAGCAGGATTCCTGCAAAGGAAAGGCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
3UTR TCA 72 bp ACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTaGTTCGTATCCACGCAGTTCCCACACACTCCGCTG +
Preference number: 3 (lower is better)
Translates to: TGLLQYVRIQRN*FVSTQFPHTPL
Trigger: CAGCGGAGTGTGTGGGAACTGCGTGGATACGAATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR GCA 90 bp CCTTCCCCTGGCATCCCACAGCCTATAACAGAGAGCAGGGTCCCTGGGCCTCTGTTGCTGATAAGTTCCTaGAGGCTGCTGGCCATCACC +
Preference number: 4 (lower is better)
Translates to: PSPGIPQPITESRVPGPLLLISS*RLLAIT
Trigger: GGTGATGGCCAGCAGCCTGCAGGAACTTATCAGCAA...CAGAGGCCCAGGGACCCTGCTCTCTGTTATAGGCTGTGGGATGCCAGGGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR TCA 90 bp CCTTCCCCTGGCATCCCACAGCCTATAACAGAGAGCAGGGTCCCTGGGCCTCTGTTGTCCCTTAAGGTCTaGAAGAACTCCTCTGTGTCC +
Preference number: 4 (lower is better)
Translates to: PSPGIPQPITESRVPGPLLSLKV*KNSSVS
Trigger: GGACACAGAGGAGTTCTTTCAGACCTTAAGGGACAA...CAGAGGCCCAGGGACCCTGCTCTCTGTTATAGGCTGTGGGATGCCAGGGGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR GCA 90 bp AATCCTGCTACTCAGCCCTGCACTGGGTACCACCCCCAAGCCCCCATTCCTTCCCCCGATTTCTTTGGTTaGTTGCAGACTGGGACATAC +
Preference number: 4 (lower is better)
Translates to: NPATQPCTGYHPQAPIPSPDFFG*LQTGTY
Trigger: GTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGG...GGAAGGAATGGGGGCTTGGGGGTGGTACCCAGTGCAGGGCTGAGTAGCAGGATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR TCA 90 bp CCTTCCCCTGGCATCCCACAGCCTATAACAGAGAGCAGGGTCCCTGGGCCTCTGCCTTTTCCAAGATCATaGAATGCGTGTTGTCCCTTA +
Preference number: 4 (lower is better)
Translates to: PSPGIPQPITESRVPGPLPFPRS*NACCPL
Trigger: TAAGGGACAACACGCATTTCATGATCTTGGAAAAGG...CAGAGGCCCAGGGACCCTGCTCTCTGTTATAGGCTGTGGGATGCCAGGGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CCA 90 bp GACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTCGTATCCACGCAGTTCCTGCAGGCTGCTaGCCATCACCCCACGCCGGC +
Preference number: 4 (lower is better)
Translates to: DWFITVCKDPKKLIRIHAVPAGC*PSPHAG
Trigger: GCCGGCGTGGGGTGATGGCCAGCAGCCTGCAGGAAC...TGCGTGGATACGAATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR GCA 90 bp GACGACTCATGTGACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTCTGTGTCCACCACGGTaGCGTCCTCCTCCAGCACCA +
Preference number: 4 (lower is better)
Translates to: DDSCDWFITVCKDPKKLILCPPR*RPPPAP
Trigger: TGGTGCTGGAGGAGGACGGCACCGTGGTGGACACAG...AATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTCACATGAGTCGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CCA 90 bp GACGACTCATGTGACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTAGCCGAGGAAGTCCTTaGGGTTCAGCCTGTATAGGT +
Preference number: 4 (lower is better)
Translates to: DDSCDWFITVCKDPKKLISRGSP*GSACIG
Trigger: ACCTATACAGGCTGAACCCCAAGGACTTCCTCGGCT...AATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTCACATGAGTCGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR TCA 90 bp GACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTCGTATCCACGCATGTATAGGTCGAAGGTaGCTCTGGCTATTCCCGATT +
Preference number: 4 (lower is better)
Translates to: DWFITVCKDPKKLIRIHACIGRR*LWLFPI
Trigger: AATCGGGAATAGCCAGAGTCACCTTCGACCTATACA...TGCGTGGATACGAATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CCA 90 bp GACGACTCATGTGACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTTATTCCCGATTTCTTTaGTTGCTTGCAGACTGGGAC +
Preference number: 4 (lower is better)
Translates to: DDSCDWFITVCKDPKKLIYSRFL*LLADWD
Trigger: GTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATA...AATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTCACATGAGTCGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR GCA 90 bp GACGACTCATGTGACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTTCCAAGATCATGAAATaGGTGTTGTCCCTTAAGGTC +
Preference number: 4 (lower is better)
Translates to: DDSCDWFITVCKDPKKLISKIMK*VLSLKV
Trigger: GACCTTAAGGGACAACACGCATTTCATGATCTTGGA...AATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTCACATGAGTCGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR GCA 90 bp GACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTCGTATCCACGCAATTTCTTTGGTTGCTTaGAGACTGGGACATACTTAC +
Preference number: 4 (lower is better)
Translates to: DWFITVCKDPKKLIRIHAISLVA*RLGHTY
Trigger: GTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAAT...TGCGTGGATACGAATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CAA 90 bp AATCCTGCTACTCAGCCCTGCACTGGGTACCACCCCCAAGCCCCCATTCCTTCCCCTTTGGTGCTAGGCTaGGGGGATGGCTGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: NPATQPCTGYHPQAPIPSPLVLG*GDGCSS
Trigger: AGAAGAGCAGCCATCCCCCAAGCCTAGCACCAAAGG...GGAAGGAATGGGGGCTTGGGGGTGGTACCCAGTGCAGGGCTGAGTAGCAGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS GCA 90 bp GGGATGGCTGCTCTTCTGTATCGCCCAGTACTCGGAGCATGTATGTaGCCGCATAGACCAGGAACTGTCCCGTCATCTGTGCAGCATAGG +
Preference number: 5 (lower is better)
Translates to: GMAALLYRPVLGACM*PHRPGTVPSSVQHR
Trigger: CCTATGCTGCACAGATGACGGGACAGTTCCTGGTCTATGCGGGCACATACATGCTCCGAGTACTGGGCGATACAGAAGAGCAGCCATCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS GCA 90 bp CCAGTTGTGATGACTAAGACATCCAGAGTCTTGCTGATAAGTTCCTaGAGGCTGCTGGCCATCACCCCACGCCGGCTACTTCGGTCATGG +
Preference number: 5 (lower is better)
Translates to: PVVMTKTSRVLLISS*RLLAITPRRLLRSW
Trigger: CCATGACCGAAGTAGCCGGCGTGGGGTGATGGCCAGCAGCCTGCAGGAACTTATCAGCAAGACTCTGGATGTCTTAGTCATCACAACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CAA 90 bp AATCCTGCTACTCAGCCCTGCACTGGGTACCACCCCCAAGCCCCCATTCCTTCCTCCCGATTTCTTTGGTaGCTTGCAGACTGGGACATA +
Preference number: 5 (lower is better)
Translates to: NPATQPCTGYHPQAPIPSSRFLW*LADWDI
Trigger: TATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGA...GGAAGGAATGGGGGCTTGGGGGTGGTACCCAGTGCAGGGCTGAGTAGCAGGATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS TCA 90 bp GACAGCCGAGGAAGTCCTTGGGGTTCAGCCTGTATAGGTCGAAGGTaGCTCTGGCTATTCCCGATTTCTTTGGTTGCTTGCAGACTGGGA +
Preference number: 5 (lower is better)
Translates to: DSRGSPWGSACIGRR*LWLFPISLVACRLG
Trigger: TCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTCGACCTATACAGGCTGAACCCCAAGGACTTCCTCGGCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS GCA 90 bp CTGTATAGGTCGAAGGTGACTCTGGCTATTCCCGATTTCTTTGGTTaGTTGCAGACTGGGACATACTTACTACCCGGTGTCCATTTCTGT +
Preference number: 5 (lower is better)
Translates to: LYRSKVTLAIPDFFG*LQTGTYLLPGVHFC
Trigger: ACAGAAATGGACACCGGGTAGTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTCGACCTATACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CCA 90 bp GAAGGTGACTCTGGCTATTCCCGATTTCTTTGGTTGCTTGCAGACTaGGACATACTTACTACCCGGTGTCCATTTCTGTCCCTTTTCCAA +
Preference number: 5 (lower is better)
Translates to: EGDSGYSRFLWLLAD*DILTTRCPFLSLFQ
Trigger: TTGGAAAAGGGACAGAAATGGACACCGGGTAGTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CAA 90 bp GACGACTCATGTGACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTCAGCCGAGGAAGTCCTaGGGGTTCAGCCTGTATAGG +
Preference number: 5 (lower is better)
Translates to: DDSCDWFITVCKDPKKLIQPRKS*GFSLYR
Trigger: CCTATACAGGCTGAACCCCAAGGACTTCCTCGGCTG...AATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTCACATGAGTCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CAA 90 bp GACGACTCATGTGACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTTACATGAACCAGCCTTaGGTGCTAGGCTTGGGGGAT +
Preference number: 5 (lower is better)
Translates to: DDSCDWFITVCKDPKKLIYMNQP*VLGLGD
Trigger: ATCCCCCAAGCCTAGCACCAAAGGCTGGTTCATGTA...AATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTCACATGAGTCGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS-3UTR CAA 90 bp GACTGGTTTATTACAGTATGTAAGGATCCAAAGAAACTGATTCGTATCCACGCACTATTCCCGATTTCTTaGGTTGCTTGCAGACTGGGA +
Preference number: 5 (lower is better)
Translates to: DWFITVCKDPKKLIRIHALFPIS*VACRLG
Trigger: TCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAG...TGCGTGGATACGAATCAGTTTCTTTGGATCCTTACATACTGTAATAAACCAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS TCA 72 bp GGCCATCACCCCACGCCGGCTACTTCGGTCATGGTTTaGAACTCGAAAAGGGCGAGCTGGATGTATGAGGGG +
Preference number: 6 (lower is better)
Translates to: GHHPTPATSVMV*NSKRASWMYEG
Trigger: CCCCTCATACATCCAGCTCGCCCTTTTCGAGTTTCAAACCATGACCGAAGTAGCCGGCGTGGGGTGATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CCA 72 bp CTGCTGGCCATCACCCCACGCCGGCTACTTCGGTCATaGTTTGAAACTCGAAAAGGGCGAGCTGGATGTATG +
Preference number: 6 (lower is better)
Translates to: LLAITPRRLLRS*FETRKGRAGCM
Trigger: CATACATCCAGCTCGCCCTTTTCGAGTTTCAAACCATGACCGAAGTAGCCGGCGTGGGGTGATGGCCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS GCA 72 bp GCTCTTCTGTATCGCCCAGTACTCGGAGCATGTATGTaGCCGCATAGACCAGGAACTGTCCCGTCATCTGTG +
Preference number: 6 (lower is better)
Translates to: ALLYRPVLGACM*PHRPGTVPSSV
Trigger: CACAGATGACGGGACAGTTCCTGGTCTATGCGGGCACATACATGCTCCGAGTACTGGGCGATACAGAAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS GCA 72 bp ATGACTAAGACATCCAGAGTCTTGCTGATAAGTTCCTaGAGGCTGCTGGCCATCACCCCACGCCGGCTACTT +
Preference number: 6 (lower is better)
Translates to: MTKTSRVLLISS*RLLAITPRRLL
Trigger: AAGTAGCCGGCGTGGGGTGATGGCCAGCAGCCTGCAGGAACTTATCAGCAAGACTCTGGATGTCTTAGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CCA 72 bp TTACATGAACCAGCCTTTGGTGCTAGGCTTGGGGGATaGCTGCTCTTCTGTATCGCCCAGTACTCGGAGCAT +
Preference number: 6 (lower is better)
Translates to: LHEPAFGARLGG*LLFCIAQYSEH
Trigger: ATGCTCCGAGTACTGGGCGATACAGAAGAGCAGCCATCCCCCAAGCCTAGCACCAAAGGCTGGTTCATGTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CAA 72 bp GACACCGAGTACATCTCGTACATCGTGGCTTTGACATaGAGACAGCCGAGGAAGTCCTTGGGGTTCAGCCTG +
Preference number: 6 (lower is better)
Translates to: DTEYISYIVALT*RQPRKSLGFSL
Trigger: CAGGCTGAACCCCAAGGACTTCCTCGGCTGTCTCAATGTCAAAGCCACGATGTACGAGATGTACTCGGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS TCA 72 bp TCCAAGATCATGAAATGCGTGTTGTCCCTTAAGGTCTaGAAGAACTCCTCTGTGTCCACCACGGTGCCGTCC +
Preference number: 6 (lower is better)
Translates to: SKIMKCVLSLKV*KNSSVSTTVPS
Trigger: GGACGGCACCGTGGTGGACACAGAGGAGTTCTTTCAGACCTTAAGGGACAACACGCATTTCATGATCTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS TCA 72 bp GGAAGTCCTTGGGGTTCAGCCTGTATAGGTCGAAGGTaGCTCTGGCTATTCCCGATTTCTTTGGTTGCTTGC +
Preference number: 6 (lower is better)
Translates to: GSPWGSACIGRR*LWLFPISLVAC
Trigger: GCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTCGACCTATACAGGCTGAACCCCAAGGACTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS GCA 72 bp TCGAAGGTGACTCTGGCTATTCCCGATTTCTTTGGTTaGTTGCAGACTGGGACATACTTACTACCCGGTGTC +
Preference number: 6 (lower is better)
Translates to: SKVTLAIPDFFG*LQTGTYLLPGV
Trigger: GACACCGGGTAGTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CAA 72 bp GTCGAAGGTGACTCTGGCTATTCCCGATTTCTTTGGTaGCTTGCAGACTGGGACATACTTACTACCCGGTGT +
Preference number: 6 (lower is better)
Translates to: VEGDSGYSRFLW*LADWDILTTRC
Trigger: ACACCGGGTAGTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTCGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CAA 90 bp TATAGGTCGAAGGTGACTCTGGCTATTCCCGATTTCTTTGGTTGCTaGCAGACTGGGACATACTTACTACCCGGTGTCCATTTCTGTCCC +
Preference number: 6 (lower is better)
Translates to: YRSKVTLAIPDFFGC*QTGTYLLPGVHFCP
Trigger: GGGACAGAAATGGACACCGGGTAGTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTTCGACCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10
CDS CAA 72 bp AAGGTGACTCTGGCTATTCCCGATTTCTTTGGTTGCTaGCAGACTGGGACATACTTACTACCCGGTGTCCAT +
Preference number: 6 (lower is better)
Translates to: KVTLAIPDFFGC*QTGTYLLPGVH
Trigger: ATGGACACCGGGTAGTAAGTATGTCCCAGTCTGCAAGCAACCAAAGAAATCGGGAATAGCCAGAGTCACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025404.10