Pregenerated sensors for CIBAR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042269Ensembl transcript IDs: ENSMUST00000048786.13, ENSMUST00000135567.4
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCCACGCGTCTTGGCTCTaGAGTCCTGCAGGTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: PQGIPDPENTSRMHQGPGHASWL*SPAGLS Trigger: AGAGAGACCTGCAGGACTTCAGAGCCAAGACGCGTG...GCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | AGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCATCCATGGCCCTCACCTaGCTGTCCCTGGAGAGGACG | + |
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Preference number: 4 (lower is better) Translates to: RPQGIPDPENTSRMHQGPSMALT*LSLERT Trigger: CGTCCTCTCCAGGGACAGCCAGGTGAGGGCCATGGA...TGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | GCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTTCACCGTGTTCTCCATaGCCCTCACCTGGCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: ARPQGIPDPENTSRMHQGSPCSP*PSPGCP Trigger: GGGACAGCCAGGTGAGGGCCATGGAGAACACGGTGA...ACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | AGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCCGGCGAAGTCTCGAATaGTGGCCCGCAGCTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RKRDPRESLTLRTQAECTRRSLE*WPAAQG Trigger: ACCCTGAGCTGCGGGCCACCATTCGAGACTTCGCCG...GGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR GCA 90 bp | AGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCGAAGTCGGGCCGTCTTaGGTGTGTAGGAGGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RKRDPRESLTLRTQAECTEVGPS*VCRRPA Trigger: TGCTGGCCTCCTACACACGCAAGACGGCCCGACTTC...GGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | GACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGCGAAGTCTCGAATGGTaGCCCGCAGCTCAGGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: DPRESLTLRTQAECTKVQRSLEW*PAAQGS Trigger: AGAACCCTGAGCTGCGGGCCACCATTCGAGACTTCG...CTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR TCA 90 bp | AGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCCTTGCTGTTGTCCCTTaGGGTCCTCCAGGGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: RKRDPRESLTLRTQAECTLAVVP*GPPGGS Trigger: AGATCCCCCTGGAGGACCTCAAGGGACAACAGCAAG...GGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | GACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGAGGTCTGGAAAGCGCTaGAATACACCTCCACCGCCT | + |
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Preference number: 4 (lower is better) Translates to: DPRESLTLRTQAECTKVQRSGKR*NTPPPP Trigger: AGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCT...CTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | AAGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACTCCCCTGGCGTGCCATaGTACTCTGAGCACTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KKARPQGIPDPENTSRMHSPGVP*YSEHSG Trigger: GCCAGAGTGCTCAGAGTACCATGGCACGCCAGGGGA...GTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR GCA 90 bp | CAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCCAGGCAAAGTCTATCAGCTaGTTCACCAGCTGGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: QGIPDPENTSRMHQGPGQAKSIS*FTSWSA Trigger: GGCTGACCAGCTGGTGAAGCAGCTGATAGACTTTGC...CTGGCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR GCA 90 bp | CAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCCAGCACCTCCACCGCCTTTaGGTGGAAAACCATCTCGAT | + |
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Preference number: 4 (lower is better) Translates to: QGIPDPENTSRMHQGPGQHLHRL*VENHLD Trigger: ATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTG...CTGGCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | GCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTTCCACCGCCTTTGCGTaGAAAACCATCTCGATGGTC | + |
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Preference number: 4 (lower is better) Translates to: ARPQGIPDPENTSRMHQGSTAFA*KTISMV Trigger: GACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGA...ACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR TCA 90 bp | ATAAAGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCGTGCCATGGTACTCTaGGCACTCTGGCTGGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: IKKARPQGIPDPENTSRMRAMVL*ALWLAR Trigger: TCTGGCCAGCCAGAGTGCTCAGAGTACCATGGCACG...CATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | GACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGATAATCCTGCACTTTaGCAAGGTCCTCGGCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: DPRESLTLRTQAECTKVQDNPAL*QGPRRS Trigger: ACTTCGCCGAGGACCTTGCCAAAGTGCAGGATTATC...CTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | CAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCCAGTTCAGTTTCTGTTCCTaGAAGGCATCCACGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGIPDPENTSRMHQGPGQFSFCS*KASTVS Trigger: GGAGACCGTGGATGCCTTCCAGGAACAGAAACTGAA...CTGGCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | ACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCCAGCCTATGCCTTCCTCAGGGTTCTCCGTGTTaGCAAAGTCTATCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: TLRTQAECTKVQASLCLPQGSPC*QSLSAA Trigger: AGCAGCTGATAGACTTTGCCAACACGGAGAACCCTG...AGGAAGGCATAGGCTGGCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CCA 90 bp | ATAAAGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGAGCTGCTTCACCAGCTaGTCAGCCTTGTCACGAAGT | + |
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Preference number: 4 (lower is better) Translates to: IKKARPQGIPDPENTSRMSCFTS*SALSRS Trigger: ACTTCGTGACAAGGCTGACCAGCTGGTGAAGCAGCT...CATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCTTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS TCA 90 bp | TCCTCTTCACCTCCAGCCTCCTTCCCCTGGCGTGCCATGGTACTCTaGGCACTCTGGCTGGCCAGAGGCCAGGGGACAGATGGAGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: SSSPPASFPWRAMVL*ALWLARGQGTDGAG Trigger: CCCCGCTCCATCTGTCCCCTGGCCTCTGGCCAGCCAGAGTGCTCAGAGTACCATGGCACGCCAGGGGAAGGAGGCTGGAGGTGAAGAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 90 bp | CATGGTACTCTGAGCACTCTGGCTGGCCAGAGGCCAGGGGACAGATaGAGCGGGGTTGGTGTCTGTGAGCGGCCGAGCTTCACCATGCCC | + |
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Preference number: 5 (lower is better) Translates to: HGTLSTLAGQRPGDR*SGVGVCERPSFTMP Trigger: GGGCATGGTGAAGCTCGGCCGCTCACAGACACCAACCCCGCTCCATCTGTCCCCTGGCCTCTGGCCAGCCAGAGTGCTCAGAGTACCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 90 bp | ATCAGTCTCACTGTCCTCTTCACCTCCAGCCTCCTTCCCCTGGCGTaGCATGGTACTCTGAGCACTCTGGCTGGCCAGAGGCCAGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: ISLTVLFTSSLLPLA*HGTLSTLAGQRPGD Trigger: GTCCCCTGGCCTCTGGCCAGCCAGAGTGCTCAGAGTACCATGGCACGCCAGGGGAAGGAGGCTGGAGGTGAAGAGGACAGTGAGACTGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 90 bp | TCTCACTGTCCTCTTCACCTCCAGCCTCCTTCCCCTGGCGTGCCATaGTACTCTGAGCACTCTGGCTGGCCAGAGGCCAGGGGACAGATG | + |
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Preference number: 5 (lower is better) Translates to: SHCPLHLQPPSPGVP*YSEHSGWPEARGQM Trigger: CATCTGTCCCCTGGCCTCTGGCCAGCCAGAGTGCTCAGAGTACCATGGCACGCCAGGGGAAGGAGGCTGGAGGTGAAGAGGACAGTGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 90 bp | GTGGCCCGCAGCTCAGGGTTCTCCGTGTTGGCAAAGTCTATCAGCTaGTTCACCAGCTGGTCAGCCTTGTCACGAAGTCGGGCCGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: VARSSGFSVLAKSIS*FTSWSALSRSRAVL Trigger: CAAGACGGCCCGACTTCGTGACAAGGCTGACCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS GCA 90 bp | GCTGCTTCACCAGCTGGTCAGCCTTGTCACGAAGTCGGGCCGTCTTaGGTGTGTAGGAGGCCAGCAGTGAGCAGAACTGACCGAAATACC | + |
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Preference number: 5 (lower is better) Translates to: AASPAGQPCHEVGPS*VCRRPAVSRTDRNT Trigger: GGTATTTCGGTCAGTTCTGCTCACTGCTGGCCTCCTACACACGCAAGACGGCCCGACTTCGTGACAAGGCTGACCAGCTGGTGAAGCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 90 bp | CGGCGAAGTCTCGAATGGTGGCCCGCAGCTCAGGGTTCTCCGTGTTaGCAAAGTCTATCAGCTGCTTCACCAGCTGGTCAGCCTTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: RRSLEWWPAAQGSPC*QSLSAASPAGQPCH Trigger: GTGACAAGGCTGACCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGACTTCGCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS-3UTR CAA 90 bp | GCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCTTGCTGTTGTCCCTaGAGGTCCTCCAGGGGGATC | + |
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Preference number: 5 (lower is better) Translates to: ARPQGIPDPENTSRMHQGPCCCP*RSSRGI Trigger: GATCCCCCTGGAGGACCTCAAGGGACAACAGCAAGG...ACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CAA 90 bp | GTGCCAATAAAGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCACCAGCTGGTCAGCCTaGTCACGAAGTCGGGCCGTC | + |
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Preference number: 5 (lower is better) Translates to: VPIKKARPQGIPDPENTSTSWSA*SRSRAV Trigger: GACGGCCCGACTTCGTGACAAGGCTGACCAGCTGGT...GCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCTTTATTGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CAA 90 bp | CCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCACACCTCCACCGCCTTaGCGTGGAAAACCATCTCGA | + |
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Preference number: 5 (lower is better) Translates to: PQGIPDPENTSRMHQGPGTPPPP*RGKPSR Trigger: TCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGT...GCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 90 bp | GCCGATAATCCTGCACTTTGGCAAGGTCCTCGGCGAAGTCTCGAATaGTGGCCCGCAGCTCAGGGTTCTCCGTGTTGGCAAAGTCTATCA | + |
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Preference number: 5 (lower is better) Translates to: ADNPALWQGPRRSLE*WPAAQGSPCWQSLS Trigger: TGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGACTTCGCCGAGGACCTTGCCAAAGTGCAGGATTATCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 90 bp | GATAATCCTGCACTTTGGCAAGGTCCTCGGCGAAGTCTCGAATGGTaGCCCGCAGCTCAGGGTTCTCCGTGTTGGCAAAGTCTATCAGCT | + |
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Preference number: 5 (lower is better) Translates to: DNPALWQGPRRSLEW*PAAQGSPCWQSLSA Trigger: AGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGACTTCGCCGAGGACCTTGCCAAAGTGCAGGATTATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS-3UTR CAA 90 bp | CAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCAAGGTCCAGGCCAGTCAGGGTTCTCCGTGTaGGCAAAGTCTATCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: QGIPDPENTSRMHQGPGQSGFSV*AKSISC Trigger: GCAGCTGATAGACTTTGCCAACACGGAGAACCCTGA...CTGGCCTGGACCTTGGTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CAA 90 bp | ATAAAGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGACAGATGGAGCGGGGTaGGTGTCTGTGAGCGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: IKKARPQGIPDPENTSRMTDGAG*VSVSGR Trigger: TCGGCCGCTCACAGACACCAACCCCGCTCCATCTGT...CATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCTTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS TCA 90 bp | CTTGTCACGAAGTCGGGCCGTCTTGCGTGTGTAGGAGGCCAGCAGTaGGCAGAACTGACCGAAATACCTCTCAGCATTTGTCACCGTGTT | + |
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Preference number: 5 (lower is better) Translates to: LVTKSGRLACVGGQQ*AELTEIPLSICHRV Trigger: AACACGGTGACAAATGCTGAGAGGTATTTCGGTCAGTTCTGCTCACTGCTGGCCTCCTACACACGCAAGACGGCCCGACTTCGTGACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 90 bp | GCAGGTCTCTCTCCAGGTCATAGTTCTCCAAGGTCTGGAAAGCGCTaGAATACACCTCCACCGCCTTTGCGTGGAAAACCATCTCGATGG | + |
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Preference number: 5 (lower is better) Translates to: AGLSPGHSSPRSGKR*NTPPPPLRGKPSRW Trigger: CCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCTTGGAGAACTATGACCTGGAGAGAGACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS-3UTR CAA 90 bp | AAGAAAGCGAGACCCCAGGGAATCCCTGACCCTGAGAACACAAGCAGAATGCACCCGGGTCTGCTTTATTaGGGCACCGTAGAGCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: KKARPQGIPDPENTSRMHPGLLY*GTVELQ Trigger: CTGAAGCTCTACGGTGCCCAAATAAAGCAGACCCGG...GTGCATTCTGCTTGTGTTCTCAGGGTCAGGGATTCCCTGGGGTCTCGCTTTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 90 bp | TCCAAGGTCTGGAAAGCGCTGGAATACACCTCCACCGCCTTTGCGTaGAAAACCATCTCGATGGTCACAAAGTCAGAGAAGATTCTCCGG | + |
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Preference number: 5 (lower is better) Translates to: SKVWKALEYTSTAFA*KTISMVTKSEKILR Trigger: CCGGAGAATCTTCTCTGACTTTGTGACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCTTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 90 bp | GTTCTCCAAGGTCTGGAAAGCGCTGGAATACACCTCCACCGCCTTTaGGTGGAAAACCATCTCGATGGTCACAAAGTCAGAGAAGATTCT | + |
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Preference number: 5 (lower is better) Translates to: VLQGLESAGIHLHRL*VENHLDGHKVREDS Trigger: AGAATCTTCTCTGACTTTGTGACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCTTGGAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 90 bp | AATCTCGTTATTTTGGACACGTTTACATTTCTTGATATCTGCCTCTaGCTGCCGATAATCCTGCACTTTGGCAAGGTCCTCGGCGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: NLVILDTFTFLDICL*LPIILHFGKVLGEV Trigger: GACTTCGCCGAGGACCTTGCCAAAGTGCAGGATTATCGGCAGGCAGAGGCAGATATCAAGAAATGTAAACGTGTCCAAAATAACGAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135567.4 |
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| CDS CCA 90 bp | TGCCTCAGTTTCTCCAGCTTTTCCAGTTGTTTAATCTCGTTATTTTaGACACGTTTACATTTCTTGATATCTGCCCGGGTCTGCTTTATT | + |
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Preference number: 5 (lower is better) Translates to: CLSFSSFSSCLISLF*TRLHFLISARVCFI Trigger: AATAAAGCAGACCCGGGCAGATATCAAGAAATGTAAACGTGTCCAAAATAACGAGATTAAACAACTGGAAAAGCTGGAGAAACTGAGGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 72 bp | TGGCTGGCCAGAGGCCAGGGGACAGATGGAGCGGGGTaGGTGTCTGTGAGCGGCCGAGCTTCACCATGCCCG | + |
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Preference number: 6 (lower is better) Translates to: WLARGQGTDGAG*VSVSGRASPCP Trigger: CGGGCATGGTGAAGCTCGGCCGCTCACAGACACCAACCCCGCTCCATCTGTCCCCTGGCCTCTGGCCAGCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 72 bp | CCTCTTCACCTCCAGCCTCCTTCCCCTGGCGTGCCATaGTACTCTGAGCACTCTGGCTGGCCAGAGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PLHLQPPSPGVP*YSEHSGWPEAR Trigger: CCTGGCCTCTGGCCAGCCAGAGTGCTCAGAGTACCATGGCACGCCAGGGGAAGGAGGCTGGAGGTGAAGAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 90 bp | TCCTGGAAGGCATCCACGGTCTCCACTAGGTGGAGGGTAGAACGGTaGGTGTCCACTGAGGCCCTCTGTGCACTGGTCTCCGCCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SWKASTVSTRWRVER*VSTEALCALVSAWE Trigger: CTCCCAGGCGGAGACCAGTGCACAGAGGGCCTCAGTGGACACCAACCGTTCTACCCTCCACCTAGTGGAGACCGTGGATGCCTTCCAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS TCA 72 bp | GAGGCCAGGGGACAGATGGAGCGGGGTTGGTGTCTGTaGGCGGCCGAGCTTCACCATGCCCGTAAATTCCAC | + |
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Preference number: 6 (lower is better) Translates to: EARGQMERGWCL*AAELHHARKFH Trigger: GTGGAATTTACGGGCATGGTGAAGCTCGGCCGCTCACAGACACCAACCCCGCTCCATCTGTCCCCTGGCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 72 bp | CCAGCTGGTCAGCCTTGTCACGAAGTCGGGCCGTCTTaGGTGTGTAGGAGGCCAGCAGTGAGCAGAACTGAC | + |
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Preference number: 6 (lower is better) Translates to: PAGQPCHEVGPS*VCRRPAVSRTD Trigger: GTCAGTTCTGCTCACTGCTGGCCTCCTACACACGCAAGACGGCCCGACTTCGTGACAAGGCTGACCAGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 72 bp | CCTGCACTTTGGCAAGGTCCTCGGCGAAGTCTCGAATaGTGGCCCGCAGCTCAGGGTTCTCCGTGTTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: PALWQGPRRSLE*WPAAQGSPCWQ Trigger: TTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGACTTCGCCGAGGACCTTGCCAAAGTGCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 72 bp | GCACTTTGGCAAGGTCCTCGGCGAAGTCTCGAATGGTaGCCCGCAGCTCAGGGTTCTCCGTGTTGGCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: ALWQGPRRSLEW*PAAQGSPCWQS Trigger: ACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGACTTCGCCGAGGACCTTGCCAAAGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 72 bp | CTCGAATGGTGGCCCGCAGCTCAGGGTTCTCCGTGTTaGCAAAGTCTATCAGCTGCTTCACCAGCTGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: LEWWPAAQGSPC*QSLSAASPAGQ Trigger: CTGACCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CAA 90 bp | AGGAGGCCAGCAGTGAGCAGAACTGACCGAAATACCTCTCAGCATTaGTCACCGTGTTCTCCATGGCCCTCACCTGGCTGTCCCTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RRPAVSRTDRNTSQH*SPCSPWPSPGCPWR Trigger: TCTCCAGGGACAGCCAGGTGAGGGCCATGGAGAACACGGTGACAAATGCTGAGAGGTATTTCGGTCAGTTCTGCTCACTGCTGGCCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 72 bp | CGAAATACCTCTCAGCATTTGTCACCGTGTTCTCCATaGCCCTCACCTGGCTGTCCCTGGAGAGGACGACGT | + |
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Preference number: 6 (lower is better) Translates to: RNTSQHLSPCSP*PSPGCPWRGRR Trigger: ACGTCGTCCTCTCCAGGGACAGCCAGGTGAGGGCCATGGAGAACACGGTGACAAATGCTGAGAGGTATTTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CCA 72 bp | TCCGTGTTGGCAAAGTCTATCAGCTGCTTCACCAGCTaGTCAGCCTTGTCACGAAGTCGGGCCGTCTTGCGT | + |
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Preference number: 6 (lower is better) Translates to: SVLAKSISCFTS*SALSRSRAVLR Trigger: ACGCAAGACGGCCCGACTTCGTGACAAGGCTGACCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CAA 72 bp | TCTCGAATGGTGGCCCGCAGCTCAGGGTTCTCCGTGTaGGCAAAGTCTATCAGCTGCTTCACCAGCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SRMVARSSGFSV*AKSISCFTSWS Trigger: TGACCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS GCA 72 bp | AGCTCAGGGTTCTCCGTGTTGGCAAAGTCTATCAGCTaGTTCACCAGCTGGTCAGCCTTGTCACGAAGTCGG | + |
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Preference number: 6 (lower is better) Translates to: SSGFSVLAKSIS*FTSWSALSRSR Trigger: CCGACTTCGTGACAAGGCTGACCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS TCA 72 bp | AAGTCGGGCCGTCTTGCGTGTGTAGGAGGCCAGCAGTaGGCAGAACTGACCGAAATACCTCTCAGCATTTGT | + |
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Preference number: 6 (lower is better) Translates to: KSGRLACVGGQQ*AELTEIPLSIC Trigger: ACAAATGCTGAGAGGTATTTCGGTCAGTTCTGCTCACTGCTGGCCTCCTACACACGCAAGACGGCCCGACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS CAA 72 bp | GCAGTGAGCAGAACTGACCGAAATACCTCTCAGCATTaGTCACCGTGTTCTCCATGGCCCTCACCTGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: AVSRTDRNTSQH*SPCSPWPSPGC Trigger: ACAGCCAGGTGAGGGCCATGGAGAACACGGTGACAAATGCTGAGAGGTATTTCGGTCAGTTCTGCTCACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048786.13 ENSMUST00000135567.4 |
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| CDS TCA 72 bp | CTTCACCATGCCCGTAAATTCCACGCGTCTTGGCTCTaGAGTCCTGCAGGTCTCTCTCCAGGTCATAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: LHHARKFHASWL*SPAGLSPGHSS Trigger: AGAACTATGACCTGGAGAGAGACCTGCAGGACTTCAGAGCCAAGACGCGTGGAATTTACGGGCATGGTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 72 bp | GGTCTGGAAAGCGCTGGAATACACCTCCACCGCCTTTaGGTGGAAAACCATCTCGATGGTCACAAAGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: GLESAGIHLHRL*VENHLDGHKVR Trigger: TCTGACTTTGTGACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 72 bp | TCTCCAGGTCATAGTTCTCCAAGGTCTGGAAAGCGCTaGAATACACCTCCACCGCCTTTGCGTGGAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: SPGHSSPRSGKR*NTPPPPLRGKP Trigger: TGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCTTGGAGAACTATGACCTGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 72 bp | AGGTCTGGAAAGCGCTGGAATACACCTCCACCGCCTTaGCGTGGAAAACCATCTCGATGGTCACAAAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: RSGKRWNTPPPP*RGKPSRWSQSQ Trigger: CTGACTTTGTGACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 90 bp | TTGGACACGTTTACATTTCTTGATATCTGCCCGGGTCTGCTTTATTaGGGCACCGTAGAGCTTCAGGGGGCTGATGACCTTGGCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LDTFTFLDICPGLLY*GTVELQGADDLGLQ Trigger: CTGGAGGCCAAGGTCATCAGCCCCCTGAAGCTCTACGGTGCCCAAATAAAGCAGACCCGGGCAGATATCAAGAAATGTAAACGTGTCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 72 bp | TGGAAAGCGCTGGAATACACCTCCACCGCCTTTGCGTaGAAAACCATCTCGATGGTCACAAAGTCAGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: WKALEYTSTAFA*KTISMVTKSEK Trigger: CTTCTCTGACTTTGTGACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 90 bp | AGTTCTCCAAGGTCTGGAAAGCGCTGGAATACACCTCCACCGCCTTaGCGTGGAAAACCATCTCGATGGTCACAAAGTCAGAGAAGATTC | + |
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Preference number: 6 (lower is better) Translates to: SSPRSGKRWNTPPPP*RGKPSRWSQSQRRF Trigger: GAATCTTCTCTGACTTTGTGACCATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCTTGGAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS GCA 72 bp | CTCGTTATTTTGGACACGTTTACATTTCTTGATATCTaGCCGGGTCTGCTTTATTTGGGCACCGTAGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LVILDTFTFLDI*PGLLYLGTVEL Trigger: AAGCTCTACGGTGCCCAAATAAAGCAGACCCGGGCAGATATCAAGAAATGTAAACGTGTCCAAAATAACGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 90 bp | CTGCCTCAGTTTCTCCAGCTTTTCCAGTTGTTTAATCTCGTTATTTaGGACACGTTTACATTTCTTGATATCTGCCCGGGTCTGCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: LPQFLQLFQLFNLVI*DTFTFLDICPGLLY Trigger: ATAAAGCAGACCCGGGCAGATATCAAGAAATGTAAACGTGTCCAAAATAACGAGATTAAACAACTGGAAAAGCTGGAGAAACTGAGGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CCA 72 bp | TTCTCCAGCTTTTCCAGTTGTTTAATCTCGTTATTTTaGACACGTTTACATTTCTTGATATCTGCCCGGGTC | + |
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Preference number: 6 (lower is better) Translates to: FSSFSSCLISLF*TRLHFLISARV Trigger: GACCCGGGCAGATATCAAGAAATGTAAACGTGTCCAAAATAACGAGATTAAACAACTGGAAAAGCTGGAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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| CDS CAA 72 bp | TTTCTCCAGCTTTTCCAGTTGTTTAATCTCGTTATTTaGGACACGTTTACATTTCTTGATATCTGCCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: FLQLFQLFNLVI*DTFTFLDICPG Trigger: ACCCGGGCAGATATCAAGAAATGTAAACGTGTCCAAAATAACGAGATTAAACAACTGGAAAAGCTGGAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048786.13 |
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