Pregenerated sensors for CIBAR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028218Ensembl transcript IDs: ENSMUST00000087052.11, ENSMUST00000108285.9, ENSMUST00000177837.8
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATCAGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTTGCGCCTCAACATCTTaGCTTTCCCGCCGCCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: ISIISFNFPSAPSFIIAFCASTS*LSRRPG Trigger: TCCCGGGCGGCGGGAAAGGCAAGATGTTGAGGCGCA...AAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCTGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR GCA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATTGCGCCTCAACATCTTaGCTTTCCCGCCGCCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: SIISFNFPSAPSFIIAFHCASTS*LSRRPG Trigger: TCCCGGGCGGCGGGAAAGGCAAGATGTTGAGGCGCA...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR TCA 90 bp | ATCAGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTGCTTCTCCACATTTGTaGCAGCATCCTGCAGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: ISIISFNFPSAPSFIIAFASPHL*QHPAVV Trigger: AACAACTGCAGGATGCTGTCACAAATGTGGAGAAGC...AAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR TCA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATGCTTCTCCACATTTGTaGCAGCATCCTGCAGTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: SIISFNFPSAPSFIIAFHASPHL*QHPAVV Trigger: AACAACTGCAGGATGCTGTCACAAATGTGGAGAAGC...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CCA 90 bp | ATCAGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTTCATCTTCTACTTGTTaGTCCTTCCTTGTTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: ISIISFNFPSAPSFIIAFSSSTC*SFLVRQ Trigger: CTGCCGAACAAGGAAGGACCAACAAGTAGAAGATGA...AAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCTGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR GCA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATAATTCAGTTTCTGCCTaGGAAATTACATGTCGATCA | + |
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Preference number: 4 (lower is better) Translates to: SIISFNFPSAPSFIIAFHNSVSA*EITCRS Trigger: TGATCGACATGTAATTTCGCAGGCAGAAACTGAATT...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108285.9 |
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| CDS GCA 90 bp | GAGCAGGCGACGCCGCCACTTCTACCGGGAGCTGAGAGCGCGCAGTaGGCGCCGCCCCGCCTGCCCGGCGTTTCCGTGGCGACGCGGCGC | + |
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Preference number: 5 (lower is better) Translates to: EQATPPLLPGAESAQ*APPRLPGVSVATRR Trigger: GCGCCGCGTCGCCACGGAAACGCCGGGCAGGCGGGGCGGCGCGCACTGCGCGCTCTCAGCTCCCGGTAGAAGTGGCGGCGTCGCCTGCTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATCTGCAGTTGTTTTGTTaGAGCATCTCGCTCATCCAG | + |
|
Preference number: 5 (lower is better) Translates to: SIISFNFPSAPSFIIAFHLQLFC*SISLIQ Trigger: CTGGATGAGCGAGATGCTCAAACAAAACAACTGCAG...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | ATCAGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCTGCAGTTGTTTTGTTaGAGCATCTCGCTCATCCAG | + |
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Preference number: 5 (lower is better) Translates to: ISIISFNFPSAPSFIIAFLQLFC*SISLIQ Trigger: CTGGATGAGCGAGATGCTCAAACAAAACAACTGCAG...AAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATGACAGCATCCTGCAGTaGTTTTGTTTGAGCATCTCG | + |
|
Preference number: 5 (lower is better) Translates to: SIISFNFPSAPSFIIAFHDSILQ*FCLSIS Trigger: CGAGATGCTCAAACAAAACAACTGCAGGATGCTGTC...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | ATCAGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTGCTGTTAATGTTGCTTaGAGATCATCTCGCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: ISIISFNFPSAPSFIIAFAVNVA*RSSRFI Trigger: GATGAAGCGAGATGATCTCAAAGCAACATTAACAGC...AAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATGCTGTTAATGTTGCTTaGAGATCATCTCGCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: SIISFNFPSAPSFIIAFHAVNVA*RSSRFI Trigger: GATGAAGCGAGATGATCTCAAAGCAACATTAACAGC...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | ATCAGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTATCTTCATCTTCTACTaGTTGGTCCTTCCTTGTTCG | + |
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Preference number: 5 (lower is better) Translates to: ISIISFNFPSAPSFIIAFIFIFY*LVLPCS Trigger: CGAACAAGGAAGGACCAACAAGTAGAAGATGAAGAT...AAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS-3UTR CAA 90 bp | AGCATAATTTCCTTTAATTTCCCCTCTGCCCCCAGTTTCATAATAGCATTTCATATCTTCATCTTCTACTaGTTGGTCCTTCCTTGTTCG | + |
|
Preference number: 5 (lower is better) Translates to: SIISFNFPSAPSFIIAFHIFIFY*LVLPCS Trigger: CGAACAAGGAAGGACCAACAAGTAGAAGATGAAGAT...ATGAAATGCTATTATGAAACTGGGGGCAGAGGGGAAATTAAAGGAAATTATGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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| CDS GCA 72 bp | ACGCCGCCACTTCTACCGGGAGCTGAGAGCGCGCAGTaGGCGCCGCCCCGCCTGCCCGGCGTTTCCGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: TPPLLPGAESAQ*APPRLPGVSVA Trigger: CGCCACGGAAACGCCGGGCAGGCGGGGCGGCGCGCACTGCGCGCTCTCAGCTCCCGGTAGAAGTGGCGGCGT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087052.11 ENSMUST00000108285.9 ENSMUST00000177837.8 |
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