Pregenerated sensors for CIB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053194Ensembl transcript IDs: ENSMUST00000065486.3
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GCAAACAGTACTCTAGAGGTGAAGGATGGACAGAGCTaGGTCATAATTCAAATCAGATTCTACAGTGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: ANSTLEVKDGQS*VIIQIRFYSAW Trigger: CCAGGCACTGTAGAATCTGATTTGAATTATGACTCAGCTCTGTCCATCCTTCACCTCTAGAGTACTGTTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| 3UTR CCA 72 bp | TATTTACTTAGCAAACAGTACTCTAGAGGTGAAGGATaGACAGAGCTGAGTCATAATTCAAATCAGATTCTA | + |
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Preference number: 3 (lower is better) Translates to: YLLSKQYSRGEG*TELSHNSNQIL Trigger: TAGAATCTGATTTGAATTATGACTCAGCTCTGTCCATCCTTCACCTCTAGAGTACTGTTTGCTAAGTAAATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR TCA 90 bp | ATTCAAATCAGATTCTACAGTGCCTGGATGCAGGGGGTGTCCAGTAGTCTTCATGAGCAGGAAGGGAGCTaGCCTGGTCCATGGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: IQIRFYSAWMQGVSSSLHEQEGS*PGPWSV Trigger: CACTGACCATGGACCAGGTCAGCTCCCTTCCTGCTC...ATGAAGACTACTGGACACCCCCTGCATCCAGGCACTGTAGAATCTGATTTGAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR CCA 90 bp | ATTCAAATCAGATTCTACAGTGCCTGGATGCAGGGGGTGTCCAGTAGTCTTCATAGGAAGGTCAGAGCCTaGTACTCTTCCAGGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: IQIRFYSAWMQGVSSSLHRKVRA*YSSRSS Trigger: GGAGGACCTGGAAGAGTACCAGGCTCTGACCTTCCT...ATGAAGACTACTGGACACCCCCTGCATCCAGGCACTGTAGAATCTGATTTGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR TCA 90 bp | ACAGAGCTGAGTCATAATTCAAATCAGATTCTACAGTGCCTGGATGCAGGGGGTGTCATTGTCCAGATCTaGCTCACTCAGGACATGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TELSHNSNQILQCLDAGGVIVQI*LTQDMV Trigger: CACCATGTCCTGAGTGAGTCAGATCTGGACAATGAC...ACCCCCTGCATCCAGGCACTGTAGAATCTGATTTGAATTATGACTCAGCTCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR GCA 90 bp | ACAGAGCTGAGTCATAATTCAAATCAGATTCTACAGTGCCTGGATGCAGGGGGTCTCACTGAATACAGATaGCATGCCCAGCACGTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TELSHNSNQILQCLDAGGLTEYR*HAQHVF Trigger: GAAGACGTGCTGGGCATGGCATCTGTATTCAGTGAG...ACCCCCTGCATCCAGGCACTGTAGAATCTGATTTGAATTATGACTCAGCTCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR GCA 90 bp | TATTTACTTAGCAAACAGTACTCTAGAGGTGAAGGATGGACAGAGCTGAGTCATAGGCTGGGGCAGGCCTaGTCACTGAATACAGATGCC | + |
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Preference number: 4 (lower is better) Translates to: YLLSKQYSRGEGWTELSHRLGQA*SLNTDA Trigger: GGCATCTGTATTCAGTGAGCAGGCCTGCCCCAGCCT...ATGACTCAGCTCTGTCCATCCTTCACCTCTAGAGTACTGTTTGCTAAGTAAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR GCA 90 bp | GGGGGAAACACATATTTACTTAGCAAACAGTACTCTAGAGGTGAAGGATGGACATCCAGGTCCTCCCACTaGATCTGGTACCTTAAACAC | + |
|
Preference number: 4 (lower is better) Translates to: GGNTYLLSKQYSRGEGWTSRSSH*IWYLKH Trigger: GTGTTTAAGGTACCAGATGCAGTGGGAGGACCTGGA...TGTCCATCCTTCACCTCTAGAGTACTGTTTGCTAAGTAAATATGTGTTTCCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR CCA 90 bp | TATTTACTTAGCAAACAGTACTCTAGAGGTGAAGGATGGACAGAGCTGAGTCATAGAGTTCATGAAATCTaGAGATTTGGCCATGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: YLLSKQYSRGEGWTELSHRVHEI*RFGHGV Trigger: CACGCCATGGCCAAATCTCCAGATTTCATGAACTCT...ATGACTCAGCTCTGTCCATCCTTCACCTCTAGAGTACTGTTTGCTAAGTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS GCA 90 bp | ATACTCAATCTTCAGGCTGGGGCAGGCCTGCTCACTGAATACAGATaGCATGCCCAGCACGTCTTCAAAGGAGAACACGTTGTCGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: ILNLQAGAGLLTEYR*HAQHVFKGEHVVVG Trigger: TCCCACGACAACGTGTTCTCCTTTGAAGACGTGCTGGGCATGGCATCTGTATTCAGTGAGCAGGCCTGCCCCAGCCTGAAGATTGAGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS TCA 90 bp | TACGAAAGGCATACTCAATCTTCAGGCTGGGGCAGGCCTGCTCACTaGATACAGATGCCATGCCCAGCACGTCTTCAAAGGAGAACACGT | + |
|
Preference number: 5 (lower is better) Translates to: YERHTQSSGWGRPAH*IQMPCPARLQRRTR Trigger: ACGTGTTCTCCTTTGAAGACGTGCTGGGCATGGCATCTGTATTCAGTGAGCAGGCCTGCCCCAGCCTGAAGATTGAGTATGCCTTTCGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR CAA 90 bp | ATTCAAATCAGATTCTACAGTGCCTGGATGCAGGGGGTGTCCAGTAGTCTTCATCGGTCTCTGAAAGGGTaGACCCTCAGAGCAGGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: IQIRFYSAWMQGVSSSLHRSLKG*TLRAGR Trigger: CCTTCCTGCTCTGAGGGTCAACCCTTTCAGAGACCG...ATGAAGACTACTGGACACCCCCTGCATCCAGGCACTGTAGAATCTGATTTGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR CAA 90 bp | ATTCAAATCAGATTCTACAGTGCCTGGATGCAGGGGGTGTCCAGTAGTCTTCATGAAAGCATACTGTCATaGTCCAGATCTGACTCACTC | + |
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Preference number: 5 (lower is better) Translates to: IQIRFYSAWMQGVSSSLHESILS*SRSDSL Trigger: GAGTGAGTCAGATCTGGACAATGACAGTATGCTTTC...ATGAAGACTACTGGACACCCCCTGCATCCAGGCACTGTAGAATCTGATTTGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR CAA 90 bp | GGGGGAAACACATATTTACTTAGCAAACAGTACTCTAGAGGTGAAGGATGGACAATGAAATCTGGAGATTaGGCCATGGCGTGTTCGAAC | + |
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Preference number: 5 (lower is better) Translates to: GGNTYLLSKQYSRGEGWTMKSGD*AMACSN Trigger: GTTCGAACACGCCATGGCCAAATCTCCAGATTTCAT...TGTCCATCCTTCACCTCTAGAGTACTGTTTGCTAAGTAAATATGTGTTTCCCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS-3UTR CAA 90 bp | TATTTACTTAGCAAACAGTACTCTAGAGGTGAAGGATGGACAGAGCTGAGTCATACAGAATCTCATTTCTaGTCAGGAAGGTCAGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: YLLSKQYSRGEGWTELSHTESHF*SGRSEP Trigger: AGGCTCTGACCTTCCTGACAAGAAATGAGATTCTGT...ATGACTCAGCTCTGTCCATCCTTCACCTCTAGAGTACTGTTTGCTAAGTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS GCA 72 bp | CCTGGTCCATGGTCAGTGTGGCCTCCTTATAGTGCTTaGCCGAGGGACAGAGCTTCAGGAAGGTGTCGTGGA | + |
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Preference number: 6 (lower is better) Translates to: PGPWSVWPPYSA*PRDRASGRCRG Trigger: TCCACGACACCTTCCTGAAGCTCTGTCCCTCGGGCAAGCACTATAAGGAGGCCACACTGACCATGGACCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS GCA 72 bp | CTTCAGGCTGGGGCAGGCCTGCTCACTGAATACAGATaGCATGCCCAGCACGTCTTCAAAGGAGAACACGTT | + |
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Preference number: 6 (lower is better) Translates to: LQAGAGLLTEYR*HAQHVFKGEHV Trigger: AACGTGTTCTCCTTTGAAGACGTGCTGGGCATGGCATCTGTATTCAGTGAGCAGGCCTGCCCCAGCCTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS GCA 72 bp | CGAAAGGCATACTCAATCTTCAGGCTGGGGCAGGCCTaGTCACTGAATACAGATGCCATGCCCAGCACGTCT | + |
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Preference number: 6 (lower is better) Translates to: RKAYSIFRLGQA*SLNTDAMPSTS Trigger: AGACGTGCTGGGCATGGCATCTGTATTCAGTGAGCAGGCCTGCCCCAGCCTGAAGATTGAGTATGCCTTTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS CAA 72 bp | GATGCCATGCCCAGCACGTCTTCAAAGGAGAACACGTaGTCGTGGGAGAATACCCTGCAGATGCGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: DAMPSTSSKENT*SWENTLQMRSL Trigger: CAGAGACCGCATCTGCAGGGTATTCTCCCACGACAACGTGTTCTCCTTTGAAGACGTGCTGGGCATGGCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS TCA 72 bp | CATACTCAATCTTCAGGCTGGGGCAGGCCTGCTCACTaGATACAGATGCCATGCCCAGCACGTCTTCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: HTQSSGWGRPAH*IQMPCPARLQR Trigger: CCTTTGAAGACGTGCTGGGCATGGCATCTGTATTCAGTGAGCAGGCCTGCCCCAGCCTGAAGATTGAGTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS CCA 72 bp | ATACTGTCATTGTCCAGATCTGACTCACTCAGGACATaGTGCATGACGTCCATCAGCAGGTCCTCAGACGCG | + |
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Preference number: 6 (lower is better) Translates to: ILSLSRSDSLRT*CMTSISRSSDA Trigger: CGCGTCTGAGGACCTGCTGATGGACGTCATGCACCATGTCCTGAGTGAGTCAGATCTGGACAATGACAGTAT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS CAA 90 bp | TTGGCCATGGCGTGTTCGAACTCGGAGAAGGAAAGCATACTGTCATaGTCCAGATCTGACTCACTCAGGACATGGTGCATGACGTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LAMACSNSEKESILS*SRSDSLRTWCMTSI Trigger: GATGGACGTCATGCACCATGTCCTGAGTGAGTCAGATCTGGACAATGACAGTATGCTTTCCTTCTCCGAGTTCGAACACGCCATGGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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| CDS CAA 72 bp | TCAGGAAGGTGTCGTGGATGCACAGAATCTCATTTCTaGTCAGGAAGGTCAGAGCCTGGTACTCTTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: SGRCRGCTESHF*SGRSEPGTLPG Trigger: ACCTGGAAGAGTACCAGGCTCTGACCTTCCTGACAAGAAATGAGATTCTGTGCATCCACGACACCTTCCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065486.3 |
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