Pregenerated sensors for CIAO2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031879Ensembl transcript IDs: ENSMUST00000093234.5, ENSMUST00000163140.2, ENSMUST00000164884.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGGGCAGCTGCCACTCGCTCCTTATCTGCAAGTTGTTTGTTCACTaGATGCTCGGAGGCGTGGGTCCCGGGTGTAATGTGTACATCCAT | + |
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Preference number: 1 (lower is better) Translates to: QGSCHSLLICKLFVH*MLGGVGPGCNVYIH Trigger: ATGGATGTACACATTACACCCGGGACCCACGCCTCCGAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CCA 90 bp | GAGGCGTGGGTCCCGGGTGTAATGTGTACATCCATCTTGAACCGCTaGGGAAGGGATCGCAGCAGCTTGACTTTGATGGAGAGGCCAATA | + |
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Preference number: 1 (lower is better) Translates to: EAWVPGVMCTSILNR*GRDRSSLTLMERPI Trigger: TATTGGCCTCTCCATCAAAGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAAGATGGATGTACACATTACACCCGGGACCCACGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CCA 90 bp | CGCTCCTTATCTGCAAGTTGTTTGTTCACTGCATGCTCGGAGGCGTaGGTCCCGGGTGTAATGTGTACATCCATCTTGAACCGCTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: RSLSASCLFTACSEA*VPGVMCTSILNRWG Trigger: TCCCCAGCGGTTCAAGATGGATGTACACATTACACCCGGGACCCACGCCTCCGAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR GCA 90 bp | ACACTGATTAACAACCTCAAGCAGGTGTGTATTCTCCAGGGCAGCTaGCACTCGCTCCTTATCTGCAAGTTGTTTGTTCACTGCATGCTC | + |
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Preference number: 1 (lower is better) Translates to: TLINNLKQVCILQGS*HSLLICKLFVHCML Trigger: GAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCTGGAGAATACACACCTGCTTGAGGTTGTTAATCAGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CCA 90 bp | CTGAATCCGAACTTGCTCTACTACGTTCAATTCCTCCAGTGTCAGTaGATGCTCCGGGTCATTAATGGAGCGGATAAGATGTGCCAAGTG | + |
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Preference number: 1 (lower is better) Translates to: LNPNLLYYVQFLQCQ*MLRVINGADKMCQV Trigger: CACTTGGCACATCTTATCCGCTCCATTAATGACCCGGAGCATCCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTTCGGATTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CAA 90 bp | GCATGCTCGGAGGCGTGGGTCCCGGGTGTAATGTGTACATCCATCTaGAACCGCTGGGGAAGGGATCGCAGCAGCTTGACTTTGATGGAG | + |
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Preference number: 2 (lower is better) Translates to: ACSEAWVPGVMCTSI*NRWGRDRSSLTLME Trigger: CTCCATCAAAGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAAGATGGATGTACACATTACACCCGGGACCCACGCCTCCGAGCATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGAGGCCAATAAGCGTGGCCATGCTGCAGTGTGGGATGGTGGGTGTGAAGGCCGGGCGGATAAACACTaGTTAACAACCTCAAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: GEANKRGHAAVWDGGCEGRADKH*LTTSSR Trigger: CCTGCTTGAGGTTGTTAATCAGTGTTTATCCGCCCG...GCCTTCACACCCACCATCCCACACTGCAGCATGGCCACGCTTATTGGCCTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CAA 90 bp | ACATCCATCTTGAACCGCTGGGGAAGGGATCGCAGCAGCTTGACTTaGATGGAGAGGCCAATAAGCGTGGCCATGCTGCAGTGTGGGATG | + |
|
Preference number: 2 (lower is better) Translates to: TSILNRWGRDRSSLT*MERPISVAMLQCGM Trigger: CATCCCACACTGCAGCATGGCCACGCTTATTGGCCTCTCCATCAAAGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAAGATGGATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CAA 90 bp | GTATTCTCCAGGGCAGCTGCCACTCGCTCCTTATCTGCAAGTTGTTaGTTCACTGCATGCTCGGAGGCGTGGGTCCCGGGTGTAATGTGT | + |
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Preference number: 2 (lower is better) Translates to: VFSRAAATRSLSASC*FTACSEAWVPGVMC Trigger: ACACATTACACCCGGGACCCACGCCTCCGAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCTGGAGAATAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CAA 90 bp | ATGTGTACATCCATCTTGAACCGCTGGGGAAGGGATCGCAGCAGCTaGACTTTGATGGAGAGGCCAATAAGCGTGGCCATGCTGCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: MCTSILNRWGRDRSS*TLMERPISVAMLQC Trigger: ACACTGCAGCATGGCCACGCTTATTGGCCTCTCCATCAAAGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAAGATGGATGTACACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR GCA 72 bp | TGTATTCTCCAGGGCAGCTGCCACTCGCTCCTTATCTaGAAGTTGTTTGTTCACTGCATGCTCGGAGGCGTG | + |
|
Preference number: 3 (lower is better) Translates to: CILQGSCHSLLI*KLFVHCMLGGV Trigger: CACGCCTCCGAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCTGGAGAATACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CCA 72 bp | GTCCCGGGTGTAATGTGTACATCCATCTTGAACCGCTaGGGAAGGGATCGCAGCAGCTTGACTTTGATGGAG | + |
|
Preference number: 3 (lower is better) Translates to: VPGVMCTSILNR*GRDRSSLTLME Trigger: CTCCATCAAAGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAAGATGGATGTACACATTACACCCGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR TCA 72 bp | GTCCAAAGCCAGGCTCACGAGCGGGCGGATAAACACTaGTTAACAACCTCAAGCAGGTGTGTATTCTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: VQSQAHERADKH*LTTSSRCVFSR Trigger: CCTGGAGAATACACACCTGCTTGAGGTTGTTAATCAGTGTTTATCCGCCCGCTCGTGAGCCTGGCTTTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000163140.2 |
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| 3UTR GCA 72 bp | AACAACCTCAAGCAGGTGTGTATTCTCCAGGGCAGCTaGCACTCGCTCCTTATCTGCAAGTTGTTTGTTCAC | + |
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Preference number: 3 (lower is better) Translates to: NNLKQVCILQGS*HSLLICKLFVH Trigger: GTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCTGGAGAATACACACCTGCTTGAGGTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CCA 72 bp | AACTTGCTCTACTACGTTCAATTCCTCCAGTGTCAGTaGATGCTCCGGGTCATTAATGGAGCGGATAAGATG | + |
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Preference number: 3 (lower is better) Translates to: NLLYYVQFLQCQ*MLRVINGADKM Trigger: CATCTTATCCGCTCCATTAATGACCCGGAGCATCCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS-3UTR GCA 90 bp | GACAACCTGAGTGCAGGCTGGGGGTCCAAAGCCAGGCTCACGAGCGGGCGGATATGTTTGTTCACTGCATaGTCGGAGGCGTGGGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: DNLSAGWGSKARLTSGRICLFTA*SEAWVP Trigger: CGGGACCCACGCCTCCGAGCATGCAGTGAACAAACA...TATCCGCCCGCTCGTGAGCCTGGCTTTGGACCCCCAGCCTGCACTCAGGTTGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| 3UTR CAA 72 bp | AGGGCAGCTGCCACTCGCTCCTTATCTGCAAGTTGTTaGTTCACTGCATGCTCGGAGGCGTGGGTCCCGGGT | + |
|
Preference number: 4 (lower is better) Translates to: RAAATRSLSASC*FTACSEAWVPG Trigger: ACCCGGGACCCACGCCTCCGAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CAA 72 bp | CTCCAGGGCAGCTGCCACTCGCTCCTTATCTGCAAGTaGTTTGTTCACTGCATGCTCGGAGGCGTGGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LQGSCHSLLICK*FVHCMLGGVGP Trigger: GGGACCCACGCCTCCGAGCATGCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTGGCAGCTGCCCTGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS-3UTR CCA 90 bp | GACAACCTGAGTGCAGGCTGGGGGTCCAAAGCCAGGCTCACGAGCGGGCGGATATGCTACTGTGCTCTCTaGGTCGCTGAATCCGAACTT | + |
|
Preference number: 4 (lower is better) Translates to: DNLSAGWGSKARLTSGRICYCAL*VAESEL Trigger: AAGTTCGGATTCAGCGACCCAGAGAGCACAGTAGCA...TATCCGCCCGCTCGTGAGCCTGGCTTTGGACCCCCAGCCTGCACTCAGGTTGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| 3UTR CAA 72 bp | GAGGCGTGGGTCCCGGGTGTAATGTGTACATCCATCTaGAACCGCTGGGGAAGGGATCGCAGCAGCTTGACT | + |
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Preference number: 4 (lower is better) Translates to: EAWVPGVMCTSI*NRWGRDRSSLT Trigger: AGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAAGATGGATGTACACATTACACCCGGGACCCACGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS-3UTR GCA 90 bp | CACTGCTACTGTGCTCTCTGGGTCGCTAACCTGAATCCGAACTTGCTCTACTACGTCCCGCCAGCGCCCTaGAGCGACGGATATCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: HCYCALWVANLNPNLLYYVPPAP*SDGYRR Trigger: TCTTCGATATCCGTCGCTGCAGGGCGCTGGCGGGAC...GTAGTAGAGCAAGTTCGGATTCAGGTTAGCGACCCAGAGAGCACAGTAGCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| 3UTR CAA 72 bp | TTGAACCGCTGGGGAAGGGATCGCAGCAGCTTGACTTaGATGGAGAGGCCAATAAGCGTGGCCATGCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LNRWGRDRSSLT*MERPISVAMLQ Trigger: CTGCAGCATGGCCACGCTTATTGGCCTCTCCATCAAAGTCAAGCTGCTGCGATCCCTTCCCCAGCGGTTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS-3UTR CCA 90 bp | GTTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGGCCATGCTGCAGTGTaGGATGGTGGGTGTGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: VKFLLVSDSRKQSHEPLVGHAAV*DGGCEG Trigger: GCCTTCACACCCACCATCCCACACTGCAGCATGGCC...CACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| 3UTR CAA 72 bp | TACTGTGCTCTCTGGGTCGCTAACCTGAATCCGAACTaGCTCTACTACGTTCAATTCCTCCAGTGTCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: YCALWVANLNPN*LYYVQFLQCQW Trigger: CCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTTCGGATTCAGGTTAGCGACCCAGAGAGCACAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS-3UTR GCA 90 bp | TTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGTGTTTGTTCACTGCATaGTCGGAGGCGTGGGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: LSFSLSVIQENKAMSPWWCLFTA*SEAWVP Trigger: CGGGACCCACGCCTCCGAGCATGCAGTGAACAAACA...CCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR TCA 90 bp | AAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGAGCGGGCGGATAAACACTaGTTAACAACCTCAAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KFLLVSDSRKQSHEPLVERADKH*LTTSSR Trigger: CCTGCTTGAGGTTGTTAATCAGTGTTTATCCGCCCG...CTCCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164884.9 |
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| CDS-3UTR GCA 90 bp | AAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGAGTCCAGTGTCAGTGGATaGTCCGGGTCATTAATGGAG | + |
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Preference number: 4 (lower is better) Translates to: KFLLVSDSRKQSHEPLVESSVSG*SGSLME Trigger: CTCCATTAATGACCCGGAGCATCCACTGACACTGGA...CTCCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR GCA 90 bp | TTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGTCCAGTGTCAGTGGATaGTCCGGGTCATTAATGGAG | + |
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Preference number: 4 (lower is better) Translates to: LSFSLSVIQENKAMSPWWSSVSG*SGSLME Trigger: CTCCATTAATGACCCGGAGCATCCACTGACACTGGA...CCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR CCA 90 bp | GTTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGTTCCTCCAGTGTCAGTaGATGCTCCGGGTCATTAAT | + |
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Preference number: 4 (lower is better) Translates to: VKFLLVSDSRKQSHEPLVFLQCQ*MLRVIN Trigger: ATTAATGACCCGGAGCATCCACTGACACTGGAGGAA...CACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR GCA 90 bp | TTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGCACTCGCTCCTTATCTaGAAGTTGTTTGTTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: LSFSLSVIQENKAMSPWWHSLLI*KLFVHC Trigger: GCAGTGAACAAACAACTTGCAGATAAGGAGCGAGTG...CCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164884.9 |
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| CDS GCA 90 bp | CACTTCTTGCCGACACCCCAAGCCCCCACCGTCCCGCCAGCGCCCTaGAGCGACGGATATCGAAGATCTCCCGGGCGTCGATGCTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: HFLPTPQAPTVPPAP*SDGYRRSPGRRCCP Trigger: CGGACAGCATCGACGCCCGGGAGATCTTCGATATCCGTCGCTGCAGGGCGCTGGCGGGACGGTGGGGGCTTGGGGTGTCGGCAAGAAGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS GCA 90 bp | CCAGCGCCCTGCAGCGACGGATATCGAAGATCTCCCGGGCGTCGATaGTGTCCGGCACTTCCTCATCTTCCTCGCCCGCCGTCACTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PAPCSDGYRRSPGRR*CPALPHLPRPPSLA Trigger: GGCCAGTGACGGCGGGCGAGGAAGATGAGGAAGTGCCGGACAGCATCGACGCCCGGGAGATCTTCGATATCCGTCGCTGCAGGGCGCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163140.2 |
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| CDS CCA 90 bp | GTCGATGCTGTCCGGCACTTCCTCATCTTCCTCGCCCGCCGTCACTaGCCGCTCCCCGGAACGCTCATAGATGAGGGGGTTAGCGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: VDAVRHFLIFLARRH*PLPGTLIDEGVSVL Trigger: GAGAACGCTAACCCCCTCATCTATGAGCGTTCCGGGGAGCGGCCAGTGACGGCGGGCGAGGAAGATGAGGAAGTGCCGGACAGCATCGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000093234.5 ENSMUST00000163140.2 ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | CCTGAGTGCAGGCTGGGGGTCCAAAGCCAGGCTCACGAGCGGGCGGATAAACACAGGGATCGCAGCAGCTaGACTTTGATGGAGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PECRLGVQSQAHERADKHRDRSS*TLMERP Trigger: TGGCCTCTCCATCAAAGTCAAGCTGCTGCGATCCCT...GTGTTTATCCGCCCGCTCGTGAGCCTGGCTTTGGACCCCCAGCCTGCACTCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| CDS-3UTR CAA 90 bp | CCCTTGGTGGAGCTGAGGCCAGGACAACCTGAGTGCAGGCTGGGGGTCCAAAGCAGGGATCGCAGCAGCTaGACTTTGATGGAGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PLVELRPGQPECRLGVQSRDRSS*TLMERP Trigger: TGGCCTCTCCATCAAAGTCAAGCTGCTGCGATCCCT...GCTTTGGACCCCCAGCCTGCACTCAGGTTGTCCTGGCCTCAGCTCCACCAAGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | CCCTTGGTGGAGCTGAGGCCAGGACAACCTGAGTGCAGGCTGGGGGTCCAAAGCCGCAGCAGCTTGACTTaGATGGAGAGGCCAATAAGC | + |
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Preference number: 5 (lower is better) Translates to: PLVELRPGQPECRLGVQSRSSLT*MERPIS Trigger: GCTTATTGGCCTCTCCATCAAAGTCAAGCTGCTGCG...GCTTTGGACCCCCAGCCTGCACTCAGGTTGTCCTGGCCTCAGCTCCACCAAGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | CTGAGTGCAGGCTGGGGGTCCAAAGCCAGGCTCACGAGCGGGCGGATAAACACTTCGCTGAATCCGAACTaGCTCTACTACGTTCAATTC | + |
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Preference number: 5 (lower is better) Translates to: LSAGWGSKARLTSGRINTSLNPN*LYYVQF Trigger: GAATTGAACGTAGTAGAGCAAGTTCGGATTCAGCGA...AGTGTTTATCCGCCCGCTCGTGAGCCTGGCTTTGGACCCCCAGCCTGCACTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| CDS-3UTR CAA 90 bp | AGTGCAGGCTGGGGGTCCAAAGCCAGGCTCACGAGCGGGCGGATAAACACTGATTTATCTGCAAGTTGTTaGTTCACTGCATGCTCGGAG | + |
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Preference number: 5 (lower is better) Translates to: SAGWGSKARLTSGRINTDLSASC*FTACSE Trigger: CTCCGAGCATGCAGTGAACAAACAACTTGCAGATAA...ATCAGTGTTTATCCGCCCGCTCGTGAGCCTGGCTTTGGACCCCCAGCCTGCACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| CDS GCA 90 bp | ATCCGAACTTGCTCTACTACGTTCAATTCCTCCAGTGTCAGTGGATaGTCCGGGTCATTAATGGAGCGGATAAGATCGAAGATCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: IRTCSTTFNSSSVSG*SGSLMERIRSKISR Trigger: CCGGGAGATCTTCGATCTTATCCGCTCCATTAATGACCCGGAGCATCCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTTCGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | TTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGAGCTGCGCAGCAGCTTGACTTaGATGGAGAGGCCAATAAGC | + |
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Preference number: 5 (lower is better) Translates to: FLLVSDSRKQSHEPLVELRSSLT*MERPIS Trigger: GCTTATTGGCCTCTCCATCAAAGTCAAGCTGCTGCG...CAGCTCCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS CCA 90 bp | CTGAATCCGAACTTGCTCTACTACGTTCAATTCCTCCAGTGTCAGTaGATGCTCCGGGTCATTAATGGAGCGGATAAGATCGAAGATCTC | + |
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Preference number: 5 (lower is better) Translates to: LNPNLLYYVQFLQCQ*MLRVINGADKIEDL Trigger: GAGATCTTCGATCTTATCCGCTCCATTAATGACCCGGAGCATCCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTTCGGATTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | TTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGTTATCTGCAAGTTGTTaGTTCACTGCATGCTCGGAG | + |
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Preference number: 5 (lower is better) Translates to: LSFSLSVIQENKAMSPWWLSASC*FTACSE Trigger: CTCCGAGCATGCAGTGAACAAACAACTTGCAGATAA...CCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | AAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGAGAACCTGAATCCGAACTaGCTCTACTACGTTCAATTC | + |
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Preference number: 5 (lower is better) Translates to: KFLLVSDSRKQSHEPLVENLNPN*LYYVQF Trigger: GAATTGAACGTAGTAGAGCAAGTTCGGATTCAGGTT...CTCCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164884.9 |
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| CDS-3UTR CAA 90 bp | TTAAGTTTCTCCTTGTCAGTGATTCAAGAAAACAAAGCCATGAGCCCTTGGTGGCTCCTTATCTGCAAGTaGTTTGTTCACTGCATGCTC | + |
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Preference number: 5 (lower is better) Translates to: LSFSLSVIQENKAMSPWWLLICK*FVHCML Trigger: GAGCATGCAGTGAACAAACAACTTGCAGATAAGGAG...CCACCAAGGGCTCATGGCTTTGTTTTCTTGAATCACTGACAAGGAGAAACTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164884.9 |
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| CDS CAA 90 bp | GTGAAGGCCACTGCTACTGTGCTCTCTGGGTCGCTGAATCCGAACTaGCTCTACTACGTTCAATTCCTCCAGTGTCAGTGGATGCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: VKATATVLSGSLNPN*LYYVQFLQCQWMLR Trigger: CCGGAGCATCCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTTCGGATTCAGCGACCCAGAGAGCACAGTAGCAGTGGCCTTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| CDS CAA 72 bp | ACTGCTACTGTGCTCTCTGGGTCGCTGAATCCGAACTaGCTCTACTACGTTCAATTCCTCCAGTGTCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: TATVLSGSLNPN*LYYVQFLQCQW Trigger: CCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTTCGGATTCAGCGACCCAGAGAGCACAGTAGCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093234.5 |
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| CDS CCA 72 bp | AACTTGCTCTACTACGTTCAATTCCTCCAGTGTCAGTaGATGCTCCGGGTCATTAATGGAGCGGATAAGATC | + |
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Preference number: 6 (lower is better) Translates to: NLLYYVQFLQCQ*MLRVINGADKI Trigger: GATCTTATCCGCTCCATTAATGACCCGGAGCATCCACTGACACTGGAGGAATTGAACGTAGTAGAGCAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093234.5 ENSMUST00000164884.9 |
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