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Pregenerated sensors for CIAO2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032381

Ensembl transcript IDs: ENSMUST00000034945.6

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AAGGCCAGGCAGTGGTGGTGTACACCTTTAATCCCAGCATTTGGGAGACAGAGCAGTTCAAGGCCAGCCTaGTCAACAGAACAAGTTCCA +
Preference number: 2 (lower is better)
Translates to: KARQWWCTPLIPAFGRQSSSRPA*STEQVP
Trigger: TGGAACTTGTTCTGTTGACCAGGCTGGCCTTGAACT...GCTCTGTCTCCCAAATGCTGGGATTAAAGGTGTACACCACCACTGCCTGGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
3UTR TCA 72 bp ATCCCAGCATTTGGGAGACAGAGCCAGGTGGATCTCTaGGTTCAAGGCCAGCCTGGTCAACAGAACAAGTTC +
Preference number: 3 (lower is better)
Translates to: IPAFGRQSQVDL*VQGQPGQQNKF
Trigger: GAACTTGTTCTGTTGACCAGGCTGGCCTTGAACTCAGAGATCCACCTGGCTCTGTCTCCCAAATGCTGGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
3UTR CCA 72 bp AGAATCCTCTTAAAAGATGCTCTGAAGGCCAGGCAGTaGTGGTGTACACCTTTAATCCCAGCATTTGGGAGA +
Preference number: 3 (lower is better)
Translates to: RILLKDALKARQ*WCTPLIPAFGR
Trigger: TCTCCCAAATGCTGGGATTAAAGGTGTACACCACCACTGCCTGGCCTTCAGAGCATCTTTTAAGAGGATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR TCA 90 bp TGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTTCTAAGAACGGCAGACACCGCTaGAGCTTTACTCTTAGGCAC +
Preference number: 4 (lower is better)
Translates to: CVLYILQRIETSRSNTSKNGRHR*SFTLRH
Trigger: GTGCCTAAGAGTAAAGCTTCAGCGGTGTCTGCCGTT...CTTAGAAGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR GCA 90 bp TCAACATGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTGTTGGGGTTCTCCATTaGAGCTGCCACTCGCTCTTT +
Preference number: 4 (lower is better)
Translates to: STCVLYILQRIETSRSNTVGVLH*SCHSLF
Trigger: AAAGAGCGAGTGGCAGCTGCAATGGAGAACCCCAAC...AGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACATGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR CCA 90 bp TCAACATGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTCGATTTCCCGAAGGTTaGGGTTCTCCATTGCAGCTG +
Preference number: 4 (lower is better)
Translates to: STCVLYILQRIETSRSNTRFPEG*GSPLQL
Trigger: CAGCTGCAATGGAGAACCCCAACCTTCGGGAAATCG...AGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACATGTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR TCA 90 bp TCAACATGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTCCACACAACTCTCTGTaGCCACTTCCAGTTCTTCTA +
Preference number: 4 (lower is better)
Translates to: STCVLYILQRIETSRSNTPHNSL*PLPVLL
Trigger: TAGAAGAACTGGAAGTGGTCACAGAGAGTTGTGTGG...AGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACATGTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR TCA 90 bp TCAACATGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTGTTGCCAAAGAGCAATaGGGTACTGTTGGTGTGAAC +
Preference number: 4 (lower is better)
Translates to: STCVLYILQRIETSRSNTVAKEQ*GTVGVN
Trigger: GTTCACACCAACAGTACCTCATTGCTCTTTGGCAAC...AGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACATGTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR GCA 90 bp TGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTTCTAAGCAGCCCAATAAGAGTTaGCAAAGAGCAATGAGGTAC +
Preference number: 4 (lower is better)
Translates to: CVLYILQRIETSRSNTSKQPNKS*QRAMRY
Trigger: GTACCTCATTGCTCTTTGGCAACTCTTATTGGGCTG...CTTAGAAGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR TCA 90 bp GTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACACTTCTAAGCCATTTATCTGCTTGTTaGTGTCTTCTTCTGTCGAGT +
Preference number: 4 (lower is better)
Translates to: VSSTSYKGLKLADPTLLSHLSAC*CLLLSS
Trigger: ACTCGACAGAAGAAGACATCAACAAGCAGATAAATG...GCTTAGAAGTGTTGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS GCA 90 bp GAGGACGCACTGTTCCACGATTTCCCGAAGGTTGGGGTTCTCCATTaGAGCTGCCACTCGCTCTTTGTCATTTATCTGCTTGTTGATGTC +
Preference number: 5 (lower is better)
Translates to: EDALFHDFPKVGVLH*SCHSLFVIYLLVDV
Trigger: GACATCAACAAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAGAACCCCAACCTTCGGGAAATCGTGGAACAGTGCGTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR CAA 90 bp TCTAGTCAACATGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAACGATTTCCCGAAGGTaGGGGTTCTCCATTGCAGCT +
Preference number: 5 (lower is better)
Translates to: SSQHVSSTSYKGLKLADPTISRR*GFSIAA
Trigger: AGCTGCAATGGAGAACCCCAACCTTCGGGAAATCGT...TGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACATGTTGACTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS-3UTR CAA 90 bp TCTAGTCAACATGTGTCCTCTACATCTTACAAAGGATTGAAACTAGCAGATCCAGCTGCCACTCGCTCTTaGTCATTTATCTGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SSQHVSSTSYKGLKLADPAATRS*SFICLL
Trigger: CAACAAGCAGATAAATGACAAAGAGCGAGTGGCAGC...TGGATCTGCTAGTTTCAATCCTTTGTAAGATGTAGAGGACACATGTTGACTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6
CDS GCA 72 bp CTGTTCCACGATTTCCCGAAGGTTGGGGTTCTCCATTaGAGCTGCCACTCGCTCTTTGTCATTTATCTGCTT +
Preference number: 6 (lower is better)
Translates to: LFHDFPKVGVLH*SCHSLFVIYLL
Trigger: AAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAGAACCCCAACCTTCGGGAAATCGTGGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034945.6