Pregenerated sensors for CHURC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090258Ensembl transcript IDs: ENSMUST00000041262.14, ENSMUST00000110399.3, ENSMUST00000126408.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACT | + |
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Preference number: 1 (lower is better) Translates to: ILLQMVVSHHVVAGI*TLDLRKSSRVLLPT Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR CCA 90 bp | GAGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: ESDLVTDGCEPPCGC*DLNFGPSEEQSGAL Trigger: AAGAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR-3UTR GCA 90 bp | GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGGAAAACAGCAGAGTCATCTaGCGGGGGTCATCAGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: DGCEPPCGCWDLNFGPSENSRVI*RGSSGR Trigger: TCTCCCTGATGACCCCCGGCAGATGACTCTGCTGTT...TTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110399.3 |
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| 3UTR CAA 90 bp | GATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCAC | + |
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Preference number: 2 (lower is better) Translates to: DLVTDGCEPPCGCWD*NFGPSEEQSGALTH Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR-3UTR GCA 90 bp | GGGAGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTGAGCCACCATGTGGTTaGTGGGATTTGAACTTTGGA | + |
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Preference number: 2 (lower is better) Translates to: GSQILLQMVVSHHVVAGIEPPCG*WDLNFG Trigger: TCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTC...AATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR-3UTR GCA 90 bp | GATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTGAGCCACCATGTGGTTaGTGGGATTTGAACTTTGGA | + |
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Preference number: 2 (lower is better) Translates to: DLVTDGCEPPCGCWDLNFEPPCG*WDLNFG Trigger: TCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTC...AAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR TCA 72 bp | CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: QMVVSHHVVAGI*TLDLRKSSRVL Trigger: GAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR-3UTR CAA 90 bp | CCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGTTCACCAGCCCTAGGCTaGCTCTATTTTAAAGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: PPCGCWDLNFGPSEEQSGSPALG*LYFKAS Trigger: GCTTGCTTTAAAATAGAGCAAGCCTAGGGCTGGTGA...ACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR CCA 72 bp | CTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCG | + |
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Preference number: 3 (lower is better) Translates to: LVTDGCEPPCGC*DLNFGPSEEQS Trigger: CGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR GCA 72 bp | GATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTTGGACCTTCGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLVTDGCEPPCG*WDLNFGPSEEQ Trigger: CTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| 3UTR-3UTR CAA 90 bp | GATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTTCACCAGCCCTAGGCTaGCTCTATTTTAAAGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: DLVTDGCEPPCGCWDLNFSPALG*LYFKAS Trigger: GCTTGCTTTAAAATAGAGCAAGCCTAGGGCTGGTGA...AAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| CDS-3UTR GCA 90 bp | GCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTAGGCTTGCTCTACCGCTTACTGCACACTaGGCAGCCTGCGAAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: AVGCSYPLSHLTSPRLALPLTAH*AACEVQ Trigger: CTGAACTTCGCAGGCTGCGCAGTGTGCAGTAAGCGG...TAGAGCAAGCCTAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 |
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| CDS-3UTR GCA 90 bp | GCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTAGGCTTGCTCTAAACAGCAGAGTCATCTaGCGGGGGTCATCAGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: AVGCSYPLSHLTSPRLALNSRVI*RGSSGR Trigger: TCTCCCTGATGACCCCCGGCAGATGACTCTGCTGTT...TAGAGCAAGCCTAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000126408.2 |
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| CDS-3UTR CCA 90 bp | GCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGAGGTGGTGCCCCGATTaGGGTACTCCTTCTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: ATMWLLGFELWTFGRAVGRWCPD*GTPSPH Trigger: GTGTGGAGAAGGAGTACCCCAATCGGGGCACCACCT...CCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 |
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| CDS-3UTR GCA 90 bp | GCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGAACAGCAGAGTCATCTaGCGGGGGTCATCAGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: ATMWLLGFELWTFGRAVGNSRVI*RGSSGR Trigger: TCTCCCTGATGACCCCCGGCAGATGACTCTGCTGTT...CCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000126408.2 |
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| CDS-3UTR CCA 90 bp | CCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGTAGGTGGTGCCCCGATTaGGGTACTCCTTCTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: PPCGCWDLNFGPSEEQSGRWCPD*GTPSPH Trigger: GTGTGGAGAAGGAGTACCCCAATCGGGGCACCACCT...ACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 |
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| CDS-3UTR CCA 90 bp | GTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTAGGCTTGCTCTATTTCATTCTCCAGACAGGTaGTGCCCCGATTGGGGTACT | + |
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Preference number: 4 (lower is better) Translates to: VGCSYPLSHLTSPRLALFHSPDR*CPDWGT Trigger: AGTACCCCAATCGGGGCACCACCTGTCTGGAGAATG...AAATAGAGCAAGCCTAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NFGPSEEQSGA Trigger: AGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 ENSMUST00000126408.2 |
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| CDS-3UTR GCA 90 bp | TTAGAACAGCAGAGTCATCTGCCGGGGGTCATCAGGGAGAATACTGATAGTATCCCGCTTACTGCACACTaGGCAGCCTGCGAAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LEQQSHLPGVIRENTDSIPLTAH*AACEVQ Trigger: CTGAACTTCGCAGGCTGCGCAGTGTGCAGTAAGCGG...GATACTATCAGTATTCTCCCTGATGACCCCCGGCAGATGACTCTGCTGTTCTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110399.3 |
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| CDS-3UTR CCA 90 bp | GGGAGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTCATTCTCCAGACAGGTaGTGCCCCGATTGGGGTACT | + |
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Preference number: 4 (lower is better) Translates to: GSQILLQMVVSHHVVAGIHSPDR*CPDWGT Trigger: AGTACCCCAATCGGGGCACCACCTGTCTGGAGAATG...AATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000110399.3 |
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| CDS-3UTR TCA 90 bp | GTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTAGGCTTGCTCTATTTAGCATGGTATATTCCTaGAATTCATCCATGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: VGCSYPLSHLTSPRLALFSMVYS*NSSMML Trigger: CAGCATCATGGATGAATTTCAGGAATATACCATGCT...AAATAGAGCAAGCCTAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041262.14 |
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| CDS-3UTR CCA 90 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGATGTATACTCGTGTCTaGCTACTACATGATGACAGT | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWDLNFGPSMYTRV*LLHDDS Trigger: ACTGTCATCATGTAGTAGCCAGACACGAGTATACAT...CGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041262.14 |
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| CDS-3UTR CCA 90 bp | TGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACACAACAGACACAGCATaGTATATTCCTGAAATTCAT | + |
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Preference number: 4 (lower is better) Translates to: CWDLNFGPSEEQSGALTHTTDTA*YIPEIH Trigger: ATGAATTTCAGGAATATACCATGCTGTGTCTGTTGT...GTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000126408.2 |
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| CDS-3UTR CCA 90 bp | TCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACACAACAGACACAGCATaGTATATTCCTGAAATTCAT | + |
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Preference number: 4 (lower is better) Translates to: SDLVTDGCEPPCGCWDLNTTDTA*YIPEIH Trigger: ATGAATTTCAGGAATATACCATGCTGTGTCTGTTGT...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000126408.2 |
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| CDS-3UTR CAA 90 bp | TGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACATAGTATCTTCAGCTTaGCCACACAACAGACACAGC | + |
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Preference number: 5 (lower is better) Translates to: CWDLNFGPSEEQSGALTHIVSSA*PHNRHS Trigger: GCTGTGTCTGTTGTGTGGCAAAGCTGAAGATACTAT...GTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000126408.2 |
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| CDS-3UTR CAA 90 bp | TCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACATAGTATCTTCAGCTTaGCCACACAACAGACACAGC | + |
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Preference number: 5 (lower is better) Translates to: SDLVTDGCEPPCGCWDLNIVSSA*PHNRHS Trigger: GCTGTGTCTGTTGTGTGGCAAAGCTGAAGATACTAT...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041262.14 ENSMUST00000126408.2 |
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