Pregenerated sensors for CHTF8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046691Ensembl transcript IDs: ENSMUST00000175940.2, ENSMUST00000176090.2, ENSMUST00000176515.2, ENSMUST00000177068.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CTGTTGTCCAGATTTGGGCCTGGGCCTAGGCCACCAGCTCTTGGGTaGGGCCCAAGACCTGGTCCTAAGCCACATGCTCGTGGGTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: LLSRFGPGPRPPALG*GPRPGPKPHARGLG Trigger: TCCCAACCCACGAGCATGTGGCTTAGGACCAGGTCTTGGGCCCAACCCAAGAGCTGGTGGCCTAGGCCCAGGCCCAAATCTGGACAACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CCA 90 bp | AGGACAAAACACCTGCCCTCATGTTGGGTCCACATCCAGGGACCATGGGGCCACACCTGGTCCTGGTCCTaGTCCCAACAGGCCTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: RTKHLPSCWVHIQGPWGHTWSWS*SQQASW Trigger: CCAGGAGGCCTGTTGGGACCAGGACCAGGACCAGGT...GTGGCCCCATGGTCCCTGGATGTGGACCCAACATGAGGGCAGGTGTTTTGTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CCA 90 bp | GGTCCACATCCAGGGACCATGGGGCCACCACTTCTAGGGTCAGGACTTGCTCCCGTTAGACATAGGCCCTaGGCCTGGAAGAGCCCCTGT | + |
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Preference number: 2 (lower is better) Translates to: GPHPGTMGPPLLGSGLAPVRHRP*AWKSPC Trigger: ACAGGGGCTCTTCCAGGCCCAGGGCCTATGTCTAAC...GGGAGCAAGTCCTGACCCTAGAAGTGGTGGCCCCATGGTCCCTGGATGTGGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCCATCTGTCCCAGAAGTCCGCCTaGCCTTGGGTTGGCCATAGG | + |
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Preference number: 2 (lower is better) Translates to: RLPEGQRAFSLRPGSPHLSQKSA*PWVGHR Trigger: CCTATGGCCAACCCAAGGGCAGGCGGACTTCTGGGA...CAGATGGGGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGTCCCAGAGGACAAAACACCTGCCCTCATGTTGGGTCCACATCCAGGGACCCAGCCGTCCTCGAGGTaGCAATGGAGCACGAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: PVPEDKTPALMLGPHPGTQPSSR*QWSTSP Trigger: TGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTG...GGTCCCTGGATGTGGACCCAACATGAGGGCAGGTGTTTTGTCCTCTGGGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CCA 90 bp | AGGACAAAACACCTGCCCTCATGTTGGGTCCACATCCAGGGACCATGGGGCCACCAGCCGTCCTCGAGGTaGCAATGGAGCACGAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: RTKHLPSCWVHIQGPWGHQPSSR*QWSTSP Trigger: TGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTG...GTGGCCCCATGGTCCCTGGATGTGGACCCAACATGAGGGCAGGTGTTTTGTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR CAA 90 bp | CTTCTAGGGTCAGGACTTGCTCCCAGAAGTCCGCCTGCCCTTGGGTaGGCCATAGGACCAGGTCCAGGAAGCCCTCCTAATCTGGGGTTA | + |
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Preference number: 2 (lower is better) Translates to: LLGSGLAPRSPPALG*AIGPGPGSPPNLGL Trigger: TAACCCCAGATTAGGAGGGCTTCCTGGACCTGGTCCTATGGCCAACCCAAGGGCAGGCGGACTTCTGGGAGCAAGTCCTGACCCTAGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAATCCCAGAAGTCCGCCTaGCCTTGGGTTGGCCATAGG | + |
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Preference number: 2 (lower is better) Translates to: AEMWWVCGVGVHLPFCVQSQKSA*PWVGHR Trigger: CCTATGGCCAACCCAAGGGCAGGCGGACTTCTGGGA...TTGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCATTGGGTGGCCTaGGTTCATAACAGGCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: KSTEASGRPESLFLEARITHWVA*VHNRPS Trigger: GGAGGGCCTGTTATGAACGCAGGCCACCCAATGGGT...GATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCAGGCCAGCAGACCTCTaGAAGGTGCCTGGATTTGAG | + |
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Preference number: 2 (lower is better) Translates to: KSTEASGRPESLFLEARIRPADL*KVPGFE Trigger: CTCAAATCCAGGCACCTTTCAGAGGTCTGCTGGCCT...GATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGCACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCTTGGGAAAGAAGTCATaGCTGGGTCGCGAGCACCAG | + |
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Preference number: 2 (lower is better) Translates to: KSTEASGRPESLFLEARILGKKS*LGREHQ Trigger: CTGGTGCTCGCGACCCAGGCATGACTTCTTTCCCAA...GATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTGCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CCA 90 bp | CAGAAGACTGAGAGAAGGCATTTGGGTTCAGTCCTCCTGATCCTGTCCCCCTTGCACCAGCTCTTGGGTTaGGCCCAAGACCTGGTCCTA | + |
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Preference number: 2 (lower is better) Translates to: QKTERRHLGSVLLILSPLHQLLG*AQDLVL Trigger: TAGGACCAGGTCTTGGGCCCAACCCAAGAGCTGGTG...CAAGGGGGACAGGATCAGGAGGACTGAACCCAAATGCCTTCTCTCAGTCTTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGCCATAGGACCAGGTCCAGGAAGCCCTCCTAATCTGGGGTTAGACATAGGCGAGCCTGATGGATTCTaGAAAGGAGCTGCATTCCTT | + |
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Preference number: 2 (lower is better) Translates to: LAIGPGPGSPPNLGLDIGEPDGF*KGAAFL Trigger: AAGGAATGCAGCTCCTTTTCAGAATCCATCAGGCTC...GCCTATGTCTAACCCCAGATTAGGAGGGCTTCCTGGACCTGGTCCTATGGCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAAATTCTGAAAAGGAGCTaGATTCCTTGGAAATGGAGC | + |
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Preference number: 2 (lower is better) Translates to: AEMWWVCGVGVHLPFCVQILKRS*IPWKWS Trigger: GCTCCATTTCCAAGGAATGCAGCTCCTTTTCAGAAT...TTGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CCA 90 bp | GTACTTCCATATCTACTCTTTTATCTAAGAGACAGCCCCAGCTCAGAACCACAGGTTAGACATAGGCCCTaGGCCTGGAAGAGCCCCTGT | + |
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Preference number: 2 (lower is better) Translates to: VLPYLLFYLRDSPSSEPQVRHRP*AWKSPC Trigger: ACAGGGGCTCTTCCAGGCCCAGGGCCTATGTCTAAC...CTGTGGTTCTGAGCTGGGGCTGTCTCTTAGATAAAAGAGTAGATATGGAAGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR CCA 72 bp | GCCCAAGACCTGGTCCTAAGCCACATGCTCGTGGGTTaGGACCCAGGCCTGGGCCTGGAAACATACCCGACC | + |
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Preference number: 3 (lower is better) Translates to: AQDLVLSHMLVG*DPGLGLETYPT Trigger: GGTCGGGTATGTTTCCAGGCCCAGGCCTGGGTCCCAACCCACGAGCATGTGGCTTAGGACCAGGTCTTGGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CAA 90 bp | CAGAAGACTGAGAGAAGGCATTTGGGTTCAGTCCTCCTGATCCTGTCCCCCTTGCCGCCTGCCCTTGGGTaGGCCATAGGACCAGGTCCA | + |
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Preference number: 3 (lower is better) Translates to: QKTERRHLGSVLLILSPLPPALG*AIGPGP Trigger: TGGACCTGGTCCTATGGCCAACCCAAGGGCAGGCGG...CAAGGGGGACAGGATCAGGAGGACTGAACCCAAATGCCTTCTCTCAGTCTTCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR TCA 72 bp | CACAGAGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTaGGGCCAGGATCACCCCATCTGCCATAGTCCATGG | + |
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Preference number: 3 (lower is better) Translates to: HRGFRKAREPFP*GQDHPICHSPW Trigger: CCATGGACTATGGCAGATGGGGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCTCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR-3UTR CAA 90 bp | GCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAAACTGAGAGAAGGCATTaGGGTTCAGTCCTCCTGATC | + |
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Preference number: 3 (lower is better) Translates to: AEMWWVCGVGVHLPFCVQTERRH*GSVLLI Trigger: GATCAGGAGGACTGAACCCAAATGCCTTCTCTCAGT...TTGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR TCA 72 bp | CCTGCTGCCCTCAGGATGGGGGCAAGATCTAAGCCTTaGGGTCCAGCCATTCTTAAGTTAAGACCAGATCCT | + |
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Preference number: 3 (lower is better) Translates to: PAALRMGARSKP*GPAILKLRPDP Trigger: AGGATCTGGTCTTAACTTAAGAATGGCTGGACCTCAAGGCTTAGATCTTGCCCCCATCCTGAGGGCAGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR TCA 72 bp | AGAAGACTGAGAGAAGGCATTTGGGTTCAGTCCTCCTaGTCCTGTCCCCCTTGGAAAGACTCCAGCATTTAC | + |
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Preference number: 3 (lower is better) Translates to: RRLREGIWVQSS*SCPPWKDSSIY Trigger: GTAAATGCTGGAGTCTTTCCAAGGGGGACAGGATCAGGAGGACTGAACCCAAATGCCTTCTCTCAGTCTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | GCCTGCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCCATCAGCACCCATTCTaGCAGGCCTTCAGCCCCCGT | + |
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Preference number: 4 (lower is better) Translates to: ACVHNRPSVQPSSRWQWSHQHPF*QAFSPR Trigger: ACGGGGGCTGAAGGCCTGGCAGAATGGGTGCTGATG...GCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGCAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR CAA 72 bp | AGATTTGGGCCTGGGCCTAGGCCACCAGCTCTTGGGTaGGGCCCAAGACCTGGTCCTAAGCCACATGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: RFGPGPRPPALG*GPRPGPKPHAR Trigger: ACGAGCATGTGGCTTAGGACCAGGTCTTGGGCCCAACCCAAGAGCTGGTGGCCTAGGCCCAGGCCCAAATCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | CCAGTCCCAGAGGACAAAACACCTGCCCTCATGTTGGGTCCACATCCAGGGACCCATCAGCACCCATTCTaGCAGGCCTTCAGCCCCCGT | + |
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Preference number: 4 (lower is better) Translates to: PVPEDKTPALMLGPHPGTHQHPF*QAFSPR Trigger: ACGGGGGCTGAAGGCCTGGCAGAATGGGTGCTGATG...GGTCCCTGGATGTGGACCCAACATGAGGGCAGGTGTTTTGTCCTCTGGGACTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| 3UTR CAA 72 bp | TCAGGACTTGCTCCCAGAAGTCCGCCTGCCCTTGGGTaGGCCATAGGACCAGGTCCAGGAAGCCCTCCTAAT | + |
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Preference number: 4 (lower is better) Translates to: SGLAPRSPPALG*AIGPGPGSPPN Trigger: ATTAGGAGGGCTTCCTGGACCTGGTCCTATGGCCAACCCAAGGGCAGGCGGACTTCTGGGAGCAAGTCCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR TCA 90 bp | ACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCCAAGGATTCCCATACAGGATATaGTGGCCCACGATCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: TGPPSSRPRGGNGARVQGFPYRI*WPTIST Trigger: TGTGCTGATCGTGGGCCATCATATCCTGTATGGGAA...TCCTTGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR TCA 90 bp | TGGGTGGCCTGCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATTCCCATACAGGATATaGTGGCCCACGATCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: WVACVHNRPSVQPSSRWQFPYRI*WPTIST Trigger: TGTGCTGATCGTGGGCCATCATATCCTGTATGGGAA...TTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGCAGGCCACCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR CCA 90 bp | GCCTGCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCCAGGGATTCCCTCAGTaGTGTAATGTAGGTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ACVHNRPSVQPSSRWQWSQGFPQ*CNVGLP Trigger: TGGGAGACCTACATTACACCACTGAGGGAATCCCTG...GCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGCAGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | TTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCTTCCAGCTAATCCGGTaGTGTAGCGAGCCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: FITGPPSSRPRGGNGARVFQLIR*CSEPRS Trigger: AGATCGAGGCTCGCTACAGCACCGGATTAGCTGGAA...GACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR CCA 90 bp | GCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGACAGGGATTCCCTCAGTaGTGTAATGTAGGTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: AFITGPPSSRPRGGNGARQGFPQ*CNVGLP Trigger: TGGGAGACCTACATTACACCACTGAGGGAATCCCTG...TCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR TCA 90 bp | ATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCCAATTCCCATACAGGATATaGTGGCCCACGATCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: ITGPPSSRPRGGNGARVQFPYRI*WPTIST Trigger: TGTGCTGATCGTGGGCCATCATATCCTGTATGGGAA...TTGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | TGGGTGGCCTGCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAAGTGTTTGACAAGGACTaGAAAAGGTTTCTCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: WVACVHNRPSVQPSSRWQVFDKD*KRFLQV Trigger: CACCTGGAGAAACCTTTTGCAGTCCTTGTCAAACAC...TTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGCAGGCCACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | GCCTGCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCGTGTTTGACAAGGACTaGAAAAGGTTTCTCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: ACVHNRPSVQPSSRWQWSVFDKD*KRFLQV Trigger: CACCTGGAGAAACCTTTTGCAGTCCTTGTCAAACAC...GCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR CCA 90 bp | ATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCCAACAGGGATTCCCTCAGTaGTGTAATGTAGGTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ITGPPSSRPRGGNGARVQQGFPQ*CNVGLP Trigger: TGGGAGACCTACATTACACCACTGAGGGAATCCCTG...TTGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR TCA 90 bp | CCTGGGCCTGGAAGAGCCCCTGTTCTAGGGTTTAAACCTGGTCCTGGTCCTGGTTTCCCATACAGGATATaGTGGCCCACGATCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: PGPGRAPVLGFKPGPGPGFPYRI*WPTIST Trigger: TGTGCTGATCGTGGGCCATCATATCCTGTATGGGAA...ACCAGGACCAGGACCAGGTTTAAACCCTAGAACAGGGGCTCTTCCAGGCCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | ACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCCAAGGACTTGTTTTTGATGAGTaGTGTCACCAAGTACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: TGPPSSRPRGGNGARVQGLVFDE*CHQVLG Trigger: ACCCAGTACTTGGTGACAGCACTCATCAAAAACAAG...TCCTTGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | GCAGAAATGTGGTGGGTCTGTGGCGTGGGTGTCCACCTCCCATTCTGTGTTCAATTCCAGCTAATCCGGTaGTGTAGCGAGCCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: AEMWWVCGVGVHLPFCVQFQLIR*CSEPRS Trigger: AGATCGAGGCTCGCTACAGCACCGGATTAGCTGGAA...TTGAACACAGAATGGGAGGTGGACACCCACGCCACAGACCCACCACATTTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | TTGGCCATAGGACCAGGTCCAGGAAGCCCTCCTAATCTGGGGTTAGACATAGGCTTCCAGCTAATCCGGTaGTGTAGCGAGCCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: LAIGPGPGSPPNLGLDIGFQLIR*CSEPRS Trigger: AGATCGAGGCTCGCTACAGCACCGGATTAGCTGGAA...GCCTATGTCTAACCCCAGATTAGGAGGGCTTCCTGGACCTGGTCCTATGGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | TTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCGTGTTTGACAAGGACTaGAAAAGGTTTCTCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: FITGPPSSRPRGGNGARVVFDKD*KRFLQV Trigger: CACCTGGAGAAACCTTTTGCAGTCCTTGTCAAACAC...GACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | ATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGAGCACGAGTCCAAGTGTTTGACAAGGACTaGAAAAGGTTTCTCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: ITGPPSSRPRGGNGARVQVFDKD*KRFLQV Trigger: CACCTGGAGAAACCTTTTGCAGTCCTTGTCAAACAC...TTGGACTCGTGCTCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | AGGGACCATGGGGCCACCACTTCTAGGGTCAGGACTTGCTCCCAGAAGTCCGCCCTTGTTTTTGATGAGTaGTGTCACCAAGTACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: RDHGATTSRVRTCSQKSALVFDE*CHQVLG Trigger: ACCCAGTACTTGGTGACAGCACTCATCAAAAACAAG...GGCGGACTTCTGGGAGCAAGTCCTGACCCTAGAAGTGGTGGCCCCATGGTCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | TGGCCTGCGTTCATAACAGGCCCTCCGTCCAGCCGTCCTCGAGGTGGCAATGGACTTGTTTTTGATGAGTaGTGTCACCAAGTACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: WPAFITGPPSSRPRGGNGLVFDE*CHQVLG Trigger: ACCCAGTACTTGGTGACAGCACTCATCAAAAACAAG...TCCATTGCCACCTCGAGGACGGCTGGACGGAGGGCCTGTTATGAACGCAGGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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| CDS-3UTR CCA 90 bp | TTGGCCATAGGACCAGGTCCAGGAAGCCCTCCTAATCTGGGGTTAGACATAGGCCAGGGATTCCCTCAGTaGTGTAATGTAGGTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LAIGPGPGSPPNLGLDIGQGFPQ*CNVGLP Trigger: TGGGAGACCTACATTACACCACTGAGGGAATCCCTG...GCCTATGTCTAACCCCAGATTAGGAGGGCTTCCTGGACCTGGTCCTATGGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR GCA 90 bp | AGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCCATCTGCTTGTTTTTGATGAGTaGTGTCACCAAGTACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: RLPEGQRAFSLRPGSPHLLVFDE*CHQVLG Trigger: ACCCAGTACTTGGTGACAGCACTCATCAAAAACAAG...CAGATGGGGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS-3UTR CCA 90 bp | AGGCTTCCGGAAGGCCAGAGAGCCTTTTCCTTGAGGCCAGGATCACCCCATCTGGTTTCTCCAGGTGGATaGTTTTCCCATACAGGATAT | + |
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Preference number: 4 (lower is better) Translates to: RLPEGQRAFSLRPGSPHLVSPGG*FSHTGY Trigger: ATATCCTGTATGGGAAAACCATCCACCTGGAGAAAC...CAGATGGGGTGATCCTGGCCTCAAGGAAAAGGCTCTCTGGCCTTCCGGAAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS GCA 90 bp | CAGTGGTGTAATGTAGGTCTCCCAGGAGGTTTCCAGCTAATCCGGTaGTGTAGCGAGCCTCGATCTCCCCCTGTAGCTCCATCAGCACCC | + |
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Preference number: 5 (lower is better) Translates to: QWCNVGLPGGFQLIR*CSEPRSPPVAPSAP Trigger: GGGTGCTGATGGAGCTACAGGGGGAGATCGAGGCTCGCTACAGCACCGGATTAGCTGGAAACCTCCTGGGAGACCTACATTACACCACTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175940.2 ENSMUST00000177068.8 |
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| CDS GCA 72 bp | AATGTAGGTCTCCCAGGAGGTTTCCAGCTAATCCGGTaGTGTAGCGAGCCTCGATCTCCCCCTGTAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: NVGLPGGFQLIR*CSEPRSPPVAP Trigger: TGGAGCTACAGGGGGAGATCGAGGCTCGCTACAGCACCGGATTAGCTGGAAACCTCCTGGGAGACCTACATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000175940.2 ENSMUST00000176090.2 ENSMUST00000176515.2 ENSMUST00000177068.8 |
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