Pregenerated sensors for CHST9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047161Ensembl transcript IDs: ENSMUST00000053017.13, ENSMUST00000130553.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTCTTTCGGCTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTaGGCATTGGTTCTTTCATCAGAGGAGTGCCTATCCTTAAAGTTT | + |
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Preference number: 1 (lower is better) Translates to: CLSAVLRSFKYCLTT*ALVLSSEECLSLKF Trigger: AAACTTTAAGGATAGGCACTCCTCTGATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAGCCGAAAGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR TCA 90 bp | TCTTCCATTTGTTGCCTTGGACCAAACTTTTGTTTAAGGGCTGAGTaGCCAGTGGCCAGTCCATCTGGATGGGTTTCTGAAAAACTTCAA | + |
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Preference number: 1 (lower is better) Translates to: SSICCLGPNFCLRAE*PVASPSGWVSEKLQ Trigger: TTGAAGTTTTTCAGAAACCCATCCAGATGGACTGGCCACTGGTCACTCAGCCCTTAAACAAAAGTTTGGTCCAAGGCAACAAATGGAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR TCA 90 bp | TTGAACTTGGGATCATTTACTCTACCATATTTCTTGCAAAACTCATaGAGGAATGACCGACGCTTCTCTTGGGTTGCATCTGCTTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: LNLGSFTLPYFLQNS*RNDRRFSWVASAFF Trigger: GAAGAAAGCAGATGCAACCCAAGAGAAGCGTCGGTCATTCCTTCATGAGTTTTGCAAGAAATATGGTAGAGTAAATGATCCCAAGTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | GTCTTTCGGCTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATTGGGCCAGTCCATCTGGATaGGTTTCTGAAAAACTTCAA | + |
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Preference number: 2 (lower is better) Translates to: VFRLCSGPLNTALPRGHWASPSG*VSEKLQ Trigger: TTGAAGTTTTTCAGAAACCCATCCAGATGGACTGGC...CCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAGCCGAAAGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR TCA 90 bp | GTCTTTCGGCTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATTGGTCAATTTTAGCTCCTTaGTGTGCTTCAGTTGATCTG | + |
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Preference number: 2 (lower is better) Translates to: VFRLCSGPLNTALPRGHWSILAP*CASVDL Trigger: CAGATCAACTGAAGCACATCAAGGAGCTAAAATTGA...CCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAGCCGAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CAA 90 bp | TCGGCTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATaGGTTCTTTCATCAGAGGAGTGCCTATCCTTAAAGTTTGGAAAT | + |
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Preference number: 2 (lower is better) Translates to: SAVLRSFKYCLTTWA*VLSSEECLSLKFGN Trigger: ATTTCCAAACTTTAAGGATAGGCACTCCTCTGATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAGCCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCCTATCCTTAAAGTTTGGAAATGTCAACTCTTTTGGAGCACCAATCAACTGTGTTTAAGGGCTGAGTaGCCAGTGGCCAGTCCATCT | + |
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Preference number: 2 (lower is better) Translates to: VPILKVWKCQLFWSTNQLCLRAE*PVASPS Trigger: AGATGGACTGGCCACTGGTCACTCAGCCCTTAAACA...CAGTTGATTGGTGCTCCAAAAGAGTTGACATTTCCAAACTTTAAGGATAGGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCTAACAAACACAGCTTTGGTATATGTATTCAAACGCATGTGTACTCCTTTTGGGCTGAGTGACCAGTaGCCAGTCCATCTGGATGGG | + |
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Preference number: 2 (lower is better) Translates to: SLTNTALVYVFKRMCTPFGLSDQ*PVHLDG Trigger: CCCATCCAGATGGACTGGCCACTGGTCACTCAGCCC...AAAAGGAGTACACATGCGTTTGAATACATATACCAAAGCTGTGTTTGTTAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | GTGAATATCCATTCCTACTGGACGGTGAGCATCCAGCAAATAGTAGGCGAATTCAGAGCAGCCAGCTTTTaGTACTTCACAGTACAGGAT | + |
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Preference number: 2 (lower is better) Translates to: VNIHSYWTVSIQQIVGEFRAASF*YFTVQD Trigger: ATCCTGTACTGTGAAGTACCAAAAGCTGGCTGCTCT...GAATTCGCCTACTATTTGCTGGATGCTCACCGTCCAGTAGGAATGGATATTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATTGGTTCTTTCATATCTGGCTAGGTTATTaGTTCCACAGCATAAGCTAC | + |
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Preference number: 2 (lower is better) Translates to: LCSGPLNTALPRGHWFFHIWLGY*FHSISY Trigger: GTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT...ATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CAA 90 bp | ATTTCTTGCAAAACTCATGAAGGAATGACCGACGCTTCTCTTGGGTaGCATCTGCTTTCTTCCATTTGTTGCCTTGGACCAAACTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: ISCKTHEGMTDASLG*HLLSSICCLGPNFC Trigger: ACAAAAGTTTGGTCCAAGGCAACAAATGGAAGAAAGCAGATGCAACCCAAGAGAAGCGTCGGTCATTCCTTCATGAGTTTTGCAAGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR TCA 90 bp | GAGTGCCTATCCTTAAAGTTTGGAAATGTCAACTCTTTTGGAGCACCAATCAACTTGATGTGCTTCAGTTaGTCTGTAAGCTCCGTTCTC | + |
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Preference number: 2 (lower is better) Translates to: ECLSLKFGNVNSFGAPINLMCFS*SVSSVL Trigger: GAGAACGGAGCTTACAGATCAACTGAAGCACATCAA...GTTGATTGGTGCTCCAAAAGAGTTGACATTTCCAAACTTTAAGGATAGGCACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR TCA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTCAGAGTTCTGATTCGTaGTCTGTTTCTGGATTTTTC | + |
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Preference number: 2 (lower is better) Translates to: IWLGYCFHSISYNAKTALQSSDS*SVSGFF Trigger: GAAAAATCCAGAAACAGATCACGAATCAGAACTCTG...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR GCA 90 bp | GTGCCTATCCTTAAAGTTTGGAAATGTCAACTCTTTTGGAGCACCAATCAACTGACGCTTCTCTTGGGTTaGATCTGCTTTCTTCCATTT | + |
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Preference number: 2 (lower is better) Translates to: VPILKVWKCQLFWSTNQLTLLLG*ICFLPF Trigger: AAATGGAAGAAAGCAGATGCAACCCAAGAGAAGCGT...CAGTTGATTGGTGCTCCAAAAGAGTTGACATTTCCAAACTTTAAGGATAGGCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | TTGGTTCTTTCATCAGAGGAGTGCCTATCCTTAAAGTTTGGAAATGTCAACTCTAATATCCATTCCTACTaGACGGTGAGCATCCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: LVLSSEECLSLKFGNVNSNIHSY*TVSIQQ Trigger: TTGCTGGATGCTCACCGTCCAGTAGGAATGGATATT...AGAGTTGACATTTCCAAACTTTAAGGATAGGCACTCCTCTGATGAAAGAACCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTTTCTTGCAAAACTCATaGAGGAATGACCGACGCTTC | + |
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Preference number: 2 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFFLQNS*RNDRRF Trigger: GAAGCGTCGGTCATTCCTTCATGAGTTTTGCAAGAA...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR GCA 90 bp | GTGCCTATCCTTAAAGTTTGGAAATGTCAACTCTTTTGGAGCACCAATCAACTGATGGGAGATATTGTATaGAGAGGAAGCCAATCCATT | + |
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Preference number: 2 (lower is better) Translates to: VPILKVWKCQLFWSTNQLMGDIV*RGSQSI Trigger: AATGGATTGGCTTCCTCTGCATACAATATCTCCCAT...CAGTTGATTGGTGCTCCAAAAGAGTTGACATTTCCAAACTTTAAGGATAGGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTATCTGGCTAGGTTATTaGTTCCACAGCATAAGCTAC | + |
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Preference number: 2 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFIWLGY*FHSISY Trigger: GTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | CTCAAACTTCCCTACAAAGTCATAGTTGATCAAACACGGATAACACAGTTTGCTTTCGTGATCTGTTTCTaGATTTTTCCCGTAGTCATC | + |
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Preference number: 2 (lower is better) Translates to: LKLPYKVIVDQTRITQFAFVICF*IFPVVI Trigger: GATGACTACGGGAAAAATCCAGAAACAGATCACGAA...AGCAAACTGTGTTATCCGTGTTTGATCAACTATGACTTTGTAGGGAAGTTTGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | CTCAAACTTCCCTACAAAGTCATAGTTGATCAAACACGGATAACACAGTTTGCTGATGGTAGTAACTATTaGGATGCTCAAATTTATCCC | + |
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Preference number: 2 (lower is better) Translates to: LKLPYKVIVDQTRITQFADGSNY*DAQIYP Trigger: GGGATAAATTTGAGCATCCCAATAGTTACTACCATC...AGCAAACTGTGTTATCCGTGTTTGATCAACTATGACTTTGTAGGGAAGTTTGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | GTGCCTATCCTTAAAGTTTGGAAATGTCAACTCTTTTGGAGCACCAATCAACTGTTCTGCAGAGGCATTTaGTCGATATTTCTTGATAAT | + |
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Preference number: 2 (lower is better) Translates to: VPILKVWKCQLFWSTNQLFCRGI*SIFLDN Trigger: ATTATCAAGAAATATCGACCAAATGCCTCTGCAGAA...CAGTTGATTGGTGCTCCAAAAGAGTTGACATTTCCAAACTTTAAGGATAGGCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CAA 90 bp | AATGCGGAGACTAATCTTTCCATGGGATCTCTAACAAACACAGCTTaGGTATATGTATTCAAACGCATGTGTACTCCTTTTAAGTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: NAETNLSMGSLTNTA*VYVFKRMCTPFKSK Trigger: TTTTGACTTAAAAGGAGTACACATGCGTTTGAATACATATACCAAAGCTGTGTTTGTTAGAGATCCCATGGAAAGATTAGTCTCCGCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCTAACAAACACAGCTTTGGTATATGTATTCAAACGCATGTGTACTCCTTTTTTCTCCCTTTGTGAATaGCTGATCTTCCTTAAAACC | + |
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Preference number: 2 (lower is better) Translates to: SLTNTALVYVFKRMCTPFFSLCE*LIFLKT Trigger: GGTTTTAAGGAAGATCAGCCATTCACAAAGGGAGAA...AAAAGGAGTACACATGCGTTTGAATACATATACCAAAGCTGTGTTTGTTAGAGA 37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CCA 72 bp | GCTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTaGGCATTGGTTCTTTCATCAGAGGAGTGCCTATCC | + |
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Preference number: 3 (lower is better) Translates to: AVLRSFKYCLTT*ALVLSSEECLS Trigger: GGATAGGCACTCCTCTGATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR GCA 72 bp | AGCTGTCTTTCGGCTGTGCTCAGGTCCTTTAAATACTaGCTTACCACGTGGGCATTGGTTCTTTCATCAGAG | + |
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Preference number: 3 (lower is better) Translates to: SCLSAVLRSFKY*LTTWALVLSSE Trigger: CTCTGATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAGCCGAAAGACAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CCA 72 bp | TTCGTGATCTGTTTCTGGATTTTTCCCGTAGTCATCTaGGGCTACTCCTGGGTGGTAGATTCTCTTCCCCAT | + |
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Preference number: 3 (lower is better) Translates to: FVICFWIFPVVI*GYSWVVDSLPH Trigger: ATGGGGAAGAGAATCTACCACCCAGGAGTAGCCCCAGATGACTACGGGAAAAATCCAGAAACAGATCACGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR TCA 72 bp | TTGATCTGTAAGCTCCGTTCTCCCTTTGTGAATGGCTaGTCTTCCTTAAAACCCTTGTTGGACTCCCTAGGT | + |
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Preference number: 3 (lower is better) Translates to: LICKLRSPFVNG*SSLKPLLDSLG Trigger: ACCTAGGGAGTCCAACAAGGGTTTTAAGGAAGATCAGCCATTCACAAAGGGAGAACGGAGCTTACAGATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATTGGTTCTTTCATTCTGCTTTCTTCCATTaGTTGCCTTGGACCAAACTT | + |
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Preference number: 3 (lower is better) Translates to: LCSGPLNTALPRGHWFFHSAFFH*LPWTKL Trigger: AAGTTTGGTCCAAGGCAACAAATGGAAGAAAGCAGA...ATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR GCA 72 bp | TTCTGCAGAGGCATTTGGTCGATATTTCTTGATAATTaGCTTTCCAAACACCGGATGGTAGTAACTATTGGG | + |
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Preference number: 3 (lower is better) Translates to: FCRGIWSIFLDN*LSKHRMVVTIG Trigger: CCCAATAGTTACTACCATCCGGTGTTTGGAAAGGCAATTATCAAGAAATATCGACCAAATGCCTCTGCAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CAA 90 bp | TCTCTAACAAACACAGCTTTGGTATATGTATTCAAACGCATGTGTACTCCTTTTCTTGATGTGCTTCAGTaGATCTGTAAGCTCCGTTCT | + |
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Preference number: 3 (lower is better) Translates to: SLTNTALVYVFKRMCTPFLDVLQ*ICKLRS Trigger: AGAACGGAGCTTACAGATCAACTGAAGCACATCAAG...AAAAGGAGTACACATGCGTTTGAATACATATACCAAAGCTGTGTTTGTTAGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR-3UTR CAA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTGCTTTCTTCCATTTGTaGCCTTGGACCAAACTTTTG | + |
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Preference number: 3 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFAFFHL*PWTKLL Trigger: CAAAAGTTTGGTCCAAGGCAACAAATGGAAGAAAGC...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAAGGGCTGAGTGACCAGTaGCCAGTCCATCTGGATGGG | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQGLSDQ*PVHLDG Trigger: CCCATCCAGATGGACTGGCCACTGGTCACTCAGCCC...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR TCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAATGTTTAAGGGCTGAGTaGCCAGTGGCCAGTCCATCT | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQCLRAE*PVASPS Trigger: AGATGGACTGGCCACTGGTCACTCAGCCCTTAAACA...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| 3UTR CAA 72 bp | CTGATCTTCCTTAAAACCCTTGTTGGACTCCCTAGGTaGAGCAGATCTCCCCCTTTCTTCTTCAGATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LIFLKTLVGLPR*SRSPPFFFRSS Trigger: TGAAGATCTGAAGAAGAAAGGGGGAGATCTGCTCAACCTAGGGAGTCCAACAAGGGTTTTAAGGAAGATCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CAA 72 bp | AAAACTCATGAAGGAATGACCGACGCTTCTCTTGGGTaGCATCTGCTTTCTTCCATTTGTTGCCTTGGACCA | + |
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Preference number: 4 (lower is better) Translates to: KTHEGMTDASLG*HLLSSICCLGP Trigger: TGGTCCAAGGCAACAAATGGAAGAAAGCAGATGCAACCCAAGAGAAGCGTCGGTCATTCCTTCATGAGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| 3UTR CAA 72 bp | CTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATaGGTTCTTTCATCAGAGGAGTGCCTATCCTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: LRSFKYCLTTWA*VLSSEECLSLK Trigger: CTTTAAGGATAGGCACTCCTCTGATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| CDS-3UTR TCA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTGATGTGCTTCAGTTaGTCTGTAAGCTCCGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: IWLGYCFHSISYNAKTALLMCFS*SVSSVL Trigger: GAGAACGGAGCTTACAGATCAACTGAAGCACATCAA...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR TCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAAGATAGAAGTCATAGATaGGCTGTCTTTCGGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQDRSHR*AVFRLC Trigger: GCACAGCCGAAAGACAGCTCATCTATGACTTCTATC...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | CTGTGCTCAGGTCCTTTAAATACTGCCTTACCACGTGGGCATTGGTTCTTTCATATGTTCTTCAATCCATaGTTGCAAGTACATGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LCSGPLNTALPRGHWFFHMFFNP*LQVHEE Trigger: CTCTTCATGTACTTGCAAGCATGGATTGAAGAACAT...ATGAAAGAACCAATGCCCACGTGGTAAGGCAGTATTTAAAGGACCTGAGCACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACTCTTGGGTTGCATCTaGTTTCTTCCATTTGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQLLGCI*FLPFVA Trigger: GGCAACAAATGGAAGAAAGCAGATGCAACCCAAGAG...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTACGCTTCTCTTGGGTTaGATCTGCTTTCTTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: IWLGYCFHSISYNAKTALTLLLG*ICFLPF Trigger: AAATGGAAGAAAGCAGATGCAACCCAAGAGAAGCGT...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTCTTCAATCCATGCTTaGAAGTACATGAAGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: IWLGYCFHSISYNAKTALSSIHA*KYMKSR Trigger: TCTGCTCTTCATGTACTTGCAAGCATGGATTGAAGA...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| CDS-3UTR GCA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTATGGGAGATATTGTATaGAGAGGAAGCCAATCCATT | + |
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Preference number: 4 (lower is better) Translates to: IWLGYCFHSISYNAKTALMGDIV*RGSQSI Trigger: AATGGATTGGCTTCCTCTGCATACAATATCTCCCAT...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR TCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACAGAGTTCTGATTCGTaGTCTGTTTCTGGATTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQQSSDS*SVSGFF Trigger: GAAAAATCCAGAAACAGATCACGAATCAGAACTCTG...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR TCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAATCAATTTTAGCTCCTTaGTGTGCTTCAGTTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQSILAP*CASVDL Trigger: CAGATCAACTGAAGCACATCAAGGAGCTAAAATTGA...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR TCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTCTGACTCTTTCCCAGTaGATATCCATTCCTACTGGA | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFLTLSQ*ISIPTG Trigger: TCCAGTAGGAATGGATATTCACTGGGAAAGAGTCAG...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAATCTTCAATCCATGCTTaGAAGTACATGAAGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQSSIHA*KYMKSR Trigger: TCTGCTCTTCATGTACTTGCAAGCATGGATTGAAGA...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| CDS-3UTR GCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTGCTGTCTTTCGGCTGTaGTCAGGTCCTTTAAATACT | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFAVFRL*SGPLNT Trigger: AGTATTTAAAGGACCTGAGCACAGCCGAAAGACAGC...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTAATATCCATTCCTACTaGACGGTGAGCATCCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFNIHSY*TVSIQQ Trigger: TTGCTGGATGCTCACCGTCCAGTAGGAATGGATATT...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTTACTGCCTTACCACGTaGGCATTGGTTCTTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFYCLTT*ALVLSS Trigger: TGATGAAAGAACCAATGCCCACGTGGTAAGGCAGTA...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACTTTCTTCCATTTGTTaGCTTGGACCAAACTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQLSSIC*LGPNFC Trigger: ACAAAAGTTTGGTCCAAGGCAACAAATGGAAGAAAG...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTTTCGTGATCTGTTTCTaGATTTTTCCCGTAGTCACC | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFFVICF*IFPVVT Trigger: GGTGACTACGGGAAAAATCCAGAAACAGATCACGAA...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGAAGAGCAGCCAGCTTTTaGTACTTCACAGTACAGGAT | + |
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Preference number: 4 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRRAASF*YFTVQD Trigger: ATCCTGTACTGTGAAGTACCAAAAGCTGGCTGCTCT...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAAGATGGTAGTAACTATTaGGATGCTCAAATTTATCCC | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQDGSNY*DAQIYP Trigger: GGGATAAATTTGAGCATCCCAATAGTTACTACCATC...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGATTACCACGTGGGCATTaGTTCTTTCATCAGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRLPRGH*FFHQRS Trigger: ACTCCTCTGATGAAAGAACCAATGCCCACGTGGTAA...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACTCTACCATATTTCTTaGAAAACTCATGAAGGAATG | + |
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Preference number: 4 (lower is better) Translates to: LGYCFHSISYNAKTALFQLYHIS*KTHEGM Trigger: CATTCCTTCATGAGTTTTGCAAGAAATATGGTAGAG...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTCTTTCATCAGAGGAGTaGCTATCCTTAAAGTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFLSSEE*LSLKFG Trigger: TCCAAACTTTAAGGATAGGCACTCCTCTGATGAAAG...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTTTCTCCCTTTGTGAATaGCTGATCTTCCTTAAAACC | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFFSLCE*LIFLKT Trigger: GGTTTTAAGGAAGATCAGCCATTCACAAAGGGAGAA...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGAGCCAGTCCATCTGGATaGGTTTCTGAAAAACTTCAA | + |
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Preference number: 4 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRASPSG*VSEKLQ Trigger: TTGAAGTTTTTCAGAAACCCATCCAGATGGACTGGC...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| 3UTR CAA 72 bp | GAGCAGCCAGCTTTTGGTACTTCACAGTACAGGATTTaGTGTTTGTCTTCTACATATATCCTAGATACTATA | + |
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Preference number: 4 (lower is better) Translates to: EQPAFGTSQYRI*CLSSTYILDTI Trigger: TATAGTATCTAGGATATATGTAGAAGACAAACACAAAATCCTGTACTGTGAAGTACCAAAAGCTGGCTGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130553.2 |
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| CDS-3UTR GCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTATGTTCTTCAATCCATaGTTGCAAGTACATGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFMFFNP*LQVHEE Trigger: CTCTTCATGTACTTGCAAGCATGGATTGAAGAACAT...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| CDS-3UTR TCA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGACTACAAAGTCATAGTTaGTCAAACACGGATAACACA | + |
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Preference number: 4 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRLQSHS*SNTDNT Trigger: TGTGTTATCCGTGTTTGATCAACTATGACTTTGTAG...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR GCA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTATATTTCTTGATAATTaGCTTTCCAAACACCGGATG | + |
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Preference number: 4 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFIFLDN*LSKHRM Trigger: CATCCGGTGTTTGGAAAGGCAATTATCAAGAAATAT...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGATTCCATTTGTTGCCTTaGACCAAACTTTTGTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRFHLLP*TKLLFK Trigger: CTTAAACAAAAGTTTGGTCCAAGGCAACAAATGGAA...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CCA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGATTCTGCAGAGGCATTTaGTCGATATTTCTTGATAAT | + |
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Preference number: 4 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRFCRGI*SIFLDN Trigger: ATTATCAAGAAATATCGACCAAATGCCTCTGCAGAA...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS TCA 90 bp | CTATTTTCCCTGTATGATGTTCTTCAATCCATGCTTGCAAGTACATaGAGAGCAGAAGCCCTGCTGTCCCAAACAGCAGGACAGAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: LFSLYDVLQSMLAST*RAEALLSQTAGQKR Trigger: TCTTTTCTGTCCTGCTGTTTGGGACAGCAGGGCTTCTGCTCTTCATGTACTTGCAAGCATGGATTGAAGAACATCATACAGGGAAAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| CDS-3UTR CAA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTGACGCTTCTCTTGGGTaGCATCTGCTTTCTTCCATT | + |
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Preference number: 5 (lower is better) Translates to: IWLGYCFHSISYNAKTALDASLG*HLLSSI Trigger: AATGGAAGAAAGCAGATGCAACCCAAGAGAAGCGTC...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CAA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTCTTGATGTGCTTCAGTaGATCTGTAAGCTCCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: IWLGYCFHSISYNAKTALLDVLQ*ICKLRS Trigger: AGAACGGAGCTTACAGATCAACTGAAGCACATCAAG...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CAA 90 bp | ATCTGGCTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTGCTTTCTTCCATTTGTaGCCTTGGACCAAACTTTTG | + |
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Preference number: 5 (lower is better) Translates to: IWLGYCFHSISYNAKTALAFFHL*PWTKLL Trigger: CAAAAGTTTGGTCCAAGGCAACAAATGGAAGAAAGC...AAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAGCCAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CAA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAATTCTTCAATCCATGCTaGCAAGTACATGAAGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: LGYCFHSISYNAKTALFQFFNPC*QVHEEQ Trigger: CTGCTCTTCATGTACTTGCAAGCATGGATTGAAGAA...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| CDS-3UTR CAA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAATCTGCTTTCTTCCATTaGTTGCCTTGGACCAAACTT | + |
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Preference number: 5 (lower is better) Translates to: LGYCFHSISYNAKTALFQSAFFH*LPWTKL Trigger: AAGTTTGGTCCAAGGCAACAAATGGAAGAAAGCAGA...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CAA 90 bp | CTAGGTTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAAGTATCATGGGAGATATaGTATGCAGAGGAAGCCAAT | + |
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Preference number: 5 (lower is better) Translates to: LGYCFHSISYNAKTALFQVSWEI*YAEEAN Trigger: ATTGGCTTCCTCTGCATACAATATCTCCCATGATAC...TTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAACCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CAA 90 bp | TTATTGCTTCCACAGCATAAGCTACAATGCCAAAACAGCTCTTTTCCAACATTTTTCTTCAATCCATGCTaGCAAGTACATGAAGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: LLLPQHKLQCQNSSFPTFFFNPC*QVHEEQ Trigger: CTGCTCTTCATGTACTTGCAAGCATGGATTGAAGAA...AAATGTTGGAAAAGAGCTGTTTTGGCATTGTAGCTTATGCTGTGGAAGCAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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| CDS-3UTR CAA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGAGAAATGTCAACTCTTTaGGAGCACCAATCAACTGTA | + |
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Preference number: 5 (lower is better) Translates to: SSFPTFKSTSSCLHVSLREMSTL*EHQSTV Trigger: TACAGTTGATTGGTGCTCCAAAAGAGTTGACATTTC...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS-3UTR CAA 90 bp | AGCTCTTTTCCAACATTTAAAAGCACATCAAGTTGTTTACATGTCTCCTTGAGACTAACAAACACAGCTTaGGTATATGTATTCAAACGC | + |
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Preference number: 5 (lower is better) Translates to: SSFPTFKSTSSCLHVSLRLTNTA*VYVFKR Trigger: GCGTTTGAATACATATACCAAAGCTGTGTTTGTTAG...TCTCAAGGAGACATGTAAACAACTTGATGTGCTTTTAAATGTTGGAAAAGAGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053017.13 |
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| CDS TCA 72 bp | CTGTATGATGTTCTTCAATCCATGCTTGCAAGTACATaGAGAGCAGAAGCCCTGCTGTCCCAAACAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: LYDVLQSMLAST*RAEALLSQTAG Trigger: TCCTGCTGTTTGGGACAGCAGGGCTTCTGCTCTTCATGTACTTGCAAGCATGGATTGAAGAACATCATACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053017.13 ENSMUST00000130553.2 |
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