Pregenerated sensors for CHST5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031952Ensembl transcript IDs: ENSMUST00000034430.6
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCGTGGCAGTGAGCAGAGGTCTGGGTGAGCCAACGAGAGGCAGGTaGACAGATTTTAGGAGCCAGCCCACAGCCGCGCCTTTCCCGCAC | + |
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Preference number: 1 (lower is better) Translates to: GVAVSRGLGEPTRGR*TDFRSQPTAAPFPH Trigger: GTGCGGGAAAGGCGCGGCTGTGGGCTGGCTCCTAAAATCTGTGCACCTGCCTCTCGTTGGCTCACCCAGACCTCTGCTCACTGCCACGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR TCA 90 bp | CGTCTCATTTTCCTCCTTGACCAGGCCCATAACTGTCCAAGTCTATaGTGGACTGAGATACTAGGGCGTGGCAGTGAGCAGAGGTCTGGG | + |
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Preference number: 1 (lower is better) Translates to: RLIFLLDQAHNCPSL*WTEILGRGSEQRSG Trigger: CCCAGACCTCTGCTCACTGCCACGCCCTAGTATCTCAGTCCATCATAGACTTGGACAGTTATGGGCCTGGTCAAGGAGGAAAATGAGACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR CCA 90 bp | TCAGGACAAATCAAAGATTCATTAAAAAGCCATCCTCCTCAGGTATaGTTGTGTGTGTGCCTGGATTCCCTTCTAGAAGGTCAGGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: SGQIKDSLKSHPPQV*LCVCLDSLLEGQAE Trigger: CTCTGCCTGACCTTCTAGAAGGGAATCCAGGCACACACACAACCATACCTGAGGAGGATGGCTTTTTAATGAATCTTTGATTTGTCCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR-3UTR CCA 90 bp | CTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCATGGTAAAGAGATGTGGGATTTaGACTCCATCCTTTCCTAGT | + |
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Preference number: 2 (lower is better) Translates to: LSRTPEQAWDPILCDCMVKRCGI*TPSFPS Trigger: ACTAGGAAAGGATGGAGTCCAAATCCCACATCTCTT...TACCATGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR-3UTR CCA 90 bp | CAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCATGGTATGATCAAAGAGGGCCGAAAACTACAATCTaGACAGAAAGAGATGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: QSRPGTPFSAIAWYDQRGPKTTI*TERDVG Trigger: TCCCACATCTCTTTCTGTCCAGATTGTAGTTTTCGG...CCCTCTTTGATCATACCATGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR CAA 90 bp | GTCAGGCAGAGAATCACAGAGGGAAGCATCGTCTCATTTTCCTCCTaGACCAGGCCCATAACTGTCCAAGTCTATGATGGACTGAGATAC | + |
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Preference number: 2 (lower is better) Translates to: VRQRITEGSIVSFSS*TRPITVQVYDGLRY Trigger: GTATCTCAGTCCATCATAGACTTGGACAGTTATGGGCCTGGTCAAGGAGGAAAATGAGACGATGCTTCCCTCTGTGATTCTCTGCCTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR-3UTR GCA 90 bp | TTCATCTCAGGACAAATCAAAGATTCATTAAAAAGCCATCCTCCTCAGGTATGGAGTGGGCACAGCTTTTaGTTTCCATTCGATAGTACT | + |
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Preference number: 2 (lower is better) Translates to: FISGQIKDSLKSHPPQVWSGHSF*FPFDST Trigger: AGTACTATCGAATGGAAAGCAAAAGCTGTGCCCACT...CCATACCTGAGGAGGATGGCTTTTTAATGAATCTTTGATTTGTCCTGAGATGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR GCA 72 bp | GTGAGCAGAGGTCTGGGTGAGCCAACGAGAGGCAGGTaGACAGATTTTAGGAGCCAGCCCACAGCCGCGCCT | + |
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Preference number: 3 (lower is better) Translates to: VSRGLGEPTRGR*TDFRSQPTAAP Trigger: AGGCGCGGCTGTGGGCTGGCTCCTAAAATCTGTGCACCTGCCTCTCGTTGGCTCACCCAGACCTCTGCTCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR CCA 72 bp | CAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCATaGTATGATCAAAGAGGGGAGAGAGTCAACGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: QSRPGTPFSAIA*YDQRGERVNEK Trigger: TTTCTCGTTGACTCTCTCCCCTCTTTGATCATACCATGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR TCA 72 bp | AAAGGAAGTGCTTTAGTAGGAGGCTGGCTGCCTCTCTaGAGGAAGTGGGCACAGCTTTTGCTTTCCATTCGA | + |
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Preference number: 3 (lower is better) Translates to: KGSALVGGWLPL*RKWAQLLLSIR Trigger: TCGAATGGAAAGCAAAAGCTGTGCCCACTTCCTTCAGAGAGGCAGCCAGCCTCCTACTAAAGCACTTCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR GCA 72 bp | GCTGGCTGCCTCTCTGAAGGAAGTGGGCACAGCTTTTaGTTTCCATTCGATAGTACTTGGTGGGAATCCAAA | + |
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Preference number: 3 (lower is better) Translates to: AGCLSEGSGHSF*FPFDSTWWESK Trigger: TTTGGATTCCCACCAAGTACTATCGAATGGAAAGCAAAAGCTGTGCCCACTTCCTTCAGAGAGGCAGCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR-3UTR CAA 90 bp | AGATGTGGGATTTGGACTCCATCCTTTCCTAGTACAGGACAAGATCACTCACACCCCAGCTACTTGCTTTaGGGTTCTCCAAGCCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: RCGIWTPSFPSTGQDHSHPSYLL*GSPSPF Trigger: GAAAGGGCTTGGAGAACCCAAAAGCAAGTAGCTGGG...GTGTGAGTGATCTTGTCCTGTACTAGGAAAGGATGGAGTCCAAATCCCACATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR GCA 72 bp | TTAAAAAGCCATCCTCCTCAGGTATGGTTGTGTGTGTaGCTGGATTCCCTTCTAGAAGGTCAGGCAGAGAAT | + |
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Preference number: 3 (lower is better) Translates to: LKSHPPQVWLCV*LDSLLEGQAEN Trigger: ATTCTCTGCCTGACCTTCTAGAAGGGAATCCAGGCACACACACAACCATACCTGAGGAGGATGGCTTTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | AGGAGCCAGCCCACAGCCGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCAGCGCCTTGGCTGTCTaGTCTCGGGAGCGCAGCACG | + |
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Preference number: 4 (lower is better) Translates to: RSQPTAAPFPHSRAGLGPSALAV*SRERST Trigger: CGTGCTGCGCTCCCGAGAGCAGACAGCCAAGGCGCT...GGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCGGCTGTGGGCTGGCTCCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | AGGAGCCAGCCCACAGCCGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCACCCAGCAGCTGCAGTaGACCCCCGCACAGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: RSQPTAAPFPHSRAGLGPTQQLQ*TPAQFL Trigger: CAGGAACTGTGCGGGGGTGCACTGCAGCTGCTGGGT...GGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCGGCTGTGGGCTGGCTCCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR TCA 90 bp | CTGGGTGAGCCAACGAGAGGCAGGTGCACAGATTTTAGGAGCCAGCCCACAGCCTGCGGCATACCTCGTTaGCCACGCGCAGCCGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LGEPTRGRCTDFRSQPTACGIPR*PRAAGG Trigger: ACCCCCGGCTGCGCGTGGTCAACGAGGTATGCCGCA...GGCTGTGGGCTGGCTCCTAAAATCTGTGCACCTGCCTCTCGTTGGCTCACCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | GCCGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCGTGACTATAGGAGCTaGAGGCTTCCTGAGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: AAPFPHSRAGLGPHSLRLRDYRS*RLPEPG Trigger: GCCTGGCTCAGGAAGCCTGCAGCTCCTATAGTCACG...CAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CCA 90 bp | AGAGGTCTGGGTGAGCCAACGAGAGGCAGGTGCACAGATTTTAGGAGCCAGCCCCCCGTGCCAGCGCCTTaGCTGTCTGCTCTCGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: RGLGEPTRGRCTDFRSQPPVPAP*LSALGS Trigger: GCTCCCGAGAGCAGACAGCCAAGGCGCTGGCACGGG...GGGCTGGCTCCTAAAATCTGTGCACCTGCCTCTCGTTGGCTCACCCAGACCTCT 63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CCA 90 bp | CTGGGTGAGCCAACGAGAGGCAGGTGCACAGATTTTAGGAGCCAGCCCACAGCCCCACCCACGTGCCGTTaGTACCCAGGACGATGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LGEPTRGRCTDFRSQPTAPPTCR*YPGRCH Trigger: ATGGCATCGTCCTGGGTACCAACGGCACGTGGGTGG...GGCTGTGGGCTGGCTCCTAAAATCTGTGCACCTGCCTCTCGTTGGCTCACCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CCA 90 bp | CTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCATGGTAGGACCCGGCGAATCTTaGCAAAGGGCAGCGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: LSRTPEQAWDPILCDCMVGPGES*QRAACG Trigger: GCCACACGCTGCCCTTTGCCAAGATTCGCCGGGTCC...TACCATGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | CTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCATGGTAGATGCCATTGTCCCGTaGCAGCGCCTTGGCTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LSRTPEQAWDPILCDCMVDAIVP*QRLGCL Trigger: CAGACAGCCAAGGCGCTGGCACGGGACAATGGCATC...TACCATGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | GCCGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCCTGGCCCTGAACCATaGGTGATATTGTGGATCCAA | + |
|
Preference number: 4 (lower is better) Translates to: AAPFPHSRAGLGPHSLRLPGPEP*VILWIQ Trigger: TTGGATCCACAATATCACGCATGGTTCAGGGCCAGG...CAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | CTGGGTGAGCCAACGAGAGGCAGGTGCACAGATTTTAGGAGCCAGCCCACAGCCCTTCTCCGTGGACGATaGCCACTTGAAACTGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LGEPTRGRCTDFRSQPTALLRGR*PLETVH Trigger: ATGGACAGTTTCAAGTGGGCATCGTCCACGGAGAAG...GGCTGTGGGCTGGCTCCTAAAATCTGTGCACCTGCCTCTCGTTGGCTCACCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CCA 90 bp | CCTAGTACAGGACAAGATCACTCACACTCCCAGCTACTTGCTTTTGGGTTCTCCGCCTGCTGGGGACGATaGCACTTGCCGGGAGACCAG | + |
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Preference number: 4 (lower is better) Translates to: PSTGQDHSHSQLLAFGFSACWGR*HLPGDQ Trigger: CTGGTCTCCCGGCAAGTGCCATCGTCCCCAGCAGGC...GGAGAACCCAAAAGCAAGTAGCTGGGAGTGTGAGTGATCTTGTCCTGTACTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | GAAGGTCAGGCAGAGAATCACAGAGGGAAGCATCGTCTCATTTTCCTCCTTGACGGGGACGATGGCACTTaGCGGGAGACCAGGAAGACC | + |
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Preference number: 4 (lower is better) Translates to: EGQAENHRGKHRLIFLLDGDDGT*RETRKT Trigger: GGTCTTCCTGGTCTCCCGGCAAGTGCCATCGTCCCC...GTCAAGGAGGAAAATGAGACGATGCTTCCCTCTGTGATTCTCTGCCTGACCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR CAA 72 bp | CACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATaGCATGGTATGATCAAAGAGGGGAGAGAGTCAACG | + |
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Preference number: 4 (lower is better) Translates to: HSRAGLGPHSLR*HGMIKEGREST Trigger: CGTTGACTCTCTCCCCTCTTTGATCATACCATGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | AGATGTGGGATTTGGACTCCATCCTTTCCTAGTACAGGACAAGATCACTCACACATCCAAGTCTGGAGCTaGGGCGTGAGACCCAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: RCGIWTPSFPSTGQDHSHIQVWS*GVRPRP Trigger: CGGCCTGGGTCTCACGCCGCAGCTCCAGACTTGGAT...GTGTGAGTGATCTTGTCCTGTACTAGGAAAGGATGGAGTCCAAATCCCACATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CCA 90 bp | CACTCCCAGCTACTTGCTTTTGGGTTCTCCAAGCCCTTTCTTTATCATACTCCATCTGCGATGCGCACATaGCTGCGGCATACCTCGTTG | + |
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Preference number: 4 (lower is better) Translates to: HSQLLAFGFSKPFLYHTPSAMRT*LRHTSL Trigger: CAACGAGGTATGCCGCAGCCATGTGCGCATCGCAGA...TGGAGTATGATAAAGAAAGGGCTTGGAGAACCCAAAAGCAAGTAGCTGGGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR TCA 90 bp | TGGACAGAAAGAGATGTGGGATTTGGACTCCATCCTTTCCTAGTACAGGACAAGTCAGGAGCGAAAGCATaGCAGTGCTGGAGAAACGGG | + |
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Preference number: 4 (lower is better) Translates to: WTERDVGFGLHPFLVQDKSGAKA*QCWRNG Trigger: CCCGTTTCTCCAGCACTGTCATGCTTTCGCTCCTGA...CTTGTCCTGTACTAGGAAAGGATGGAGTCCAAATCCCACATCTCTTTCTGTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CCA 90 bp | CTCAGGACAAATCAAAGATTCATTAAAAAGCCATCCTCCTCAGGTATGGTTGTGCCCCCGCACAGTTCCTaGACCCGGCGAATCTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LRTNQRFIKKPSSSGMVVPPHSS*TRRILA Trigger: TGCCAAGATTCGCCGGGTCCAGGAACTGTGCGGGGG...CACAACCATACCTGAGGAGGATGGCTTTTTAATGAATCTTTGATTTGTCCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR GCA 90 bp | TTCATCTCAGGACAAATCAAAGATTCATTAAAAAGCCATCCTCCTCAGGTATGGAGGCTGCCTCTGCGATaGGCACATGGCTGCGGCATA | + |
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Preference number: 4 (lower is better) Translates to: FISGQIKDSLKSHPPQVWRLPLR*AHGCGI Trigger: TATGCCGCAGCCATGTGCGCATCGCAGAGGCAGCCT...CCATACCTGAGGAGGATGGCTTTTTAATGAATCTTTGATTTGTCCTGAGATGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR CAA 72 bp | AGAATCACAGAGGGAAGCATCGTCTCATTTTCCTCCTaGACCAGGCCCATAACTGTCCAAGTCTATGATGGA | + |
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Preference number: 4 (lower is better) Translates to: RITEGSIVSFSS*TRPITVQVYDG Trigger: TCCATCATAGACTTGGACAGTTATGGGCCTGGTCAAGGAGGAAAATGAGACGATGCTTCCCTCTGTGATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| 3UTR CAA 72 bp | CAGGACAAGATCACTCACACTCCCAGCTACTTGCTTTaGGGTTCTCCAAGCCCTTTCTTTATCATACTCCAA | + |
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Preference number: 4 (lower is better) Translates to: QDKITHTPSYLL*GSPSPFFIILQ Trigger: TTGGAGTATGATAAAGAAAGGGCTTGGAGAACCCAAAAGCAAGTAGCTGGGAGTGTGAGTGATCTTGTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | AGGAGCCAGCCCACAGCCGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCAGGCGGTAGCGATCTaGCAAGAAGGGCGGCGGCTT | + |
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Preference number: 5 (lower is better) Translates to: RSQPTAAPFPHSRAGLGPQAVAI*QEGRRL Trigger: AAGCCGCCGCCCTTCTTGCAAGATCGCTACCGCCTG...GGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCGGCTGTGGGCTGGCTCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS GCA 90 bp | CTGAGCGGATCAGGTCACGCACGGCCATGTGGAGTGCGGGGGCACTaGCCTGCGACAACGTATCCCAGACGTGCCAAGCCGGCTCCATCA | + |
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Preference number: 5 (lower is better) Translates to: LSGSGHARPCGVRGH*PATTYPRRAKPAPS Trigger: TGATGGAGCCGGCTTGGCACGTCTGGGATACGTTGTCGCAGGGCAGTGCCCCCGCACTCCACATGGCCGTGCGTGACCTGATCCGCTCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | CGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCATCCACCCACGTGCCGTaGGTACCCAGGACGATGCCA | + |
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Preference number: 5 (lower is better) Translates to: RAFPALQSRPGTPFSAIASTHVP*VPRTMP Trigger: TGGCATCGTCCTGGGTACCAACGGCACGTGGGTGGA...TGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CCA 90 bp | AAGGCTTCACGGCGCGCGCCTGGCCCTGAACCATGCGTGATATTGTaGATCCAAGTCTGGAGCTGCGGCGTGAGACCCAGGCCGGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: KASRRAPGPEPCVIL*IQVWSCGVRPRPVK Trigger: CTTCACCGGCCTGGGTCTCACGCCGCAGCTCCAGACTTGGATCCACAATATCACGCATGGTTCAGGGCCAGGCGCGCGCCGTGAAGCCTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS TCA 90 bp | CTCGCTGCTGATGTTGCCACGAGCGAAGGCTTCGCAGACCGGAGGTaGGCACAATGCGCGGCTCACCGCCCACTGGAAGAGATCCGAGAT | + |
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Preference number: 5 (lower is better) Translates to: LAADVATSEGFADRR*AQCAAHRPLEEIRD Trigger: ATCTCGGATCTCTTCCAGTGGGCGGTGAGCCGCGCATTGTGCTCACCTCCGGTCTGCGAAGCCTTCGCTCGTGGCAACATCAGCAGCGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS GCA 90 bp | ACTATAGGAGCTGCAGGCTTCCTGAGCCAGGCCGAAGGGCCGCGTTaGGCACAGAGGCTTACACACCTCCTCGCTGCTGATGTTGCCACG | + |
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Preference number: 5 (lower is better) Translates to: TIGAAGFLSQAEGPR*AQRLTHLLAADVAT Trigger: CGTGGCAACATCAGCAGCGAGGAGGTGTGTAAGCCTCTGTGCGCAACGCGGCCCTTCGGCCTGGCTCAGGAAGCCTGCAGCTCCTATAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | CGCGCCTTTCCCGCACTCCAGAGCAGGCCTGGGACCCCATTCTCTGCGATTGCAGTGGACGATGCCCACTaGAAACTGTCCATGCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: RAFPALQSRPGTPFSAIAVDDAH*KLSMPL Trigger: AAGAGGCATGGACAGTTTCAAGTGGGCATCGTCCAC...TGCAATCGCAGAGAATGGGGTCCCAGGCCTGCTCTGGAGTGCGGGAAAGGCGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | CCTAGTACAGGACAAGATCACTCACACTCCCAGCTACTTGCTTTTGGGTTCTCCCTGCGGCATACCTCGTaGACCACGCGCAGCCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: PSTGQDHSHSQLLAFGFSLRHTS*TTRSRG Trigger: CCCCCGGCTGCGCGTGGTCAACGAGGTATGCCGCAG...GGAGAACCCAAAAGCAAGTAGCTGGGAGTGTGAGTGATCTTGTCCTGTACTAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | GTGGGATTTGGACTCCATCCTTTCCTAGTACAGGACAAGATCACTCACACTCCCTCCCGTGCCAGCGCCTaGGCTGTCTGCTCTCGGGAG | + |
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Preference number: 5 (lower is better) Translates to: VGFGLHPFLVQDKITHTPSRASA*AVCSRE Trigger: CTCCCGAGAGCAGACAGCCAAGGCGCTGGCACGGGA...GGGAGTGTGAGTGATCTTGTCCTGTACTAGGAAAGGATGGAGTCCAAATCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CCA 90 bp | TTGCTTCTCCGTGGACGATGCCCACTTGAAACTGTCCATGCCTCTTaGCAGCAGGAGGTCCAGAGAGAGGTCCCTTTGCTCAAGCTCCGA | + |
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Preference number: 5 (lower is better) Translates to: LLLRGRCPLETVHAS*QQEVQREVPLLKLR Trigger: TCGGAGCTTGAGCAAAGGGACCTCTCTCTGGACCTCCTGCTGCCAAGAGGCATGGACAGTTTCAAGTGGGCATCGTCCACGGAGAAGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | CCTTCTAGAAGGTCAGGCAGAGAATCACAGAGGGAAGCATCGTCTCATTTTCCTAAGAAGGGCGGCGGCTaGTGCAAGGCTGCCTCTGCG | + |
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Preference number: 5 (lower is better) Translates to: PSRRSGRESQREASSHFPKKGGG*CKAASA Trigger: CGCAGAGGCAGCCTTGCACAAGCCGCCGCCCTTCTT...AGGAAAATGAGACGATGCTTCCCTCTGTGATTCTCTGCCTGACCTTCTAGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | CCTTCTAGAAGGTCAGGCAGAGAATCACAGAGGGAAGCATCGTCTCATTTTCCTTGGACCCGGCGAATCTaGGCAAAGGGCAGCGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: PSRRSGRESQREASSHFPWTRRI*AKGSVW Trigger: CCACACGCTGCCCTTTGCCAAGATTCGCCGGGTCCA...AGGAAAATGAGACGATGCTTCCCTCTGTGATTCTCTGCCTGACCTTCTAGAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS-3UTR CAA 90 bp | CCTTCTAGAAGGTCAGGCAGAGAATCACAGAGGGAAGCATCGTCTCATTTTCCTAACTGTCCATGCCTCTaGGCAGCAGGAGGTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: PSRRSGRESQREASSHFPNCPCL*AAGGPE Trigger: CTCTGGACCTCCTGCTGCCAAGAGGCATGGACAGTT...AGGAAAATGAGACGATGCTTCCCTCTGTGATTCTCTGCCTGACCTTCTAGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS GCA 72 bp | TCAGGTCACGCACGGCCATGTGGAGTGCGGGGGCACTaGCCTGCGACAACGTATCCCAGACGTGCCAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: SGHARPCGVRGH*PATTYPRRAKP Trigger: CGGCTTGGCACGTCTGGGATACGTTGTCGCAGGGCAGTGCCCCCGCACTCCACATGGCCGTGCGTGACCTGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CCA 72 bp | ACCGGAGGTGAGCACAATGCGCGGCTCACCGCCCACTaGAAGAGATCCGAGATGTTGCGGCGCCAGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: TGGEHNARLTAH*KRSEMLRRQGR Trigger: CCTGCCCTGGCGCCGCAACATCTCGGATCTCTTCCAGTGGGCGGTGAGCCGCGCATTGTGCTCACCTCCGGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS GCA 72 bp | GGACAGTACCAGCACGTGCACACGCTCCCCAAGGCCTaGTGGGGACGATGGCACTTGCCGGGAGACCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: GQYQHVHTLPKA*WGRWHLPGDQE Trigger: TTCCTGGTCTCCCGGCAAGTGCCATCGTCCCCAGCAGGCCTTGGGGAGCGTGTGCACGTGCTGGTACTGTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS GCA 72 bp | GCTGCAGGCTTCCTGAGCCAGGCCGAAGGGCCGCGTTaGGCACAGAGGCTTACACACCTCCTCGCTGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: AAGFLSQAEGPR*AQRLTHLLAAD Trigger: ATCAGCAGCGAGGAGGTGTGTAAGCCTCTGTGCGCAACGCGGCCCTTCGGCCTGGCTCAGGAAGCCTGCAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CCA 72 bp | CAGTACCAGCACGTGCACACGCTCCCCAAGGCCTGCTaGGGACGATGGCACTTGCCGGGAGACCAGGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: QYQHVHTLPKAC*GRWHLPGDQED Trigger: GTCTTCCTGGTCTCCCGGCAAGTGCCATCGTCCCCAGCAGGCCTTGGGGAGCGTGTGCACGTGCTGGTACTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 72 bp | CACACGCTCCCCAAGGCCTGCTGGGGACGATGGCACTaGCCGGGAGACCAGGAAGACCAGGATGCCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: HTLPKACWGRWH*PGDQEDQDASL Trigger: CAGACTGGCATCCTGGTCTTCCTGGTCTCCCGGCAAGTGCCATCGTCCCCAGCAGGCCTTGGGGAGCGTGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 72 bp | TCCACCCACGTGCCGTTGGTACCCAGGACGATGCCATaGTCCCGTGCCAGCGCCTTGGCTGTCTGCTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: STHVPLVPRTMP*SRASALAVCSR Trigger: CCGAGAGCAGACAGCCAAGGCGCTGGCACGGGACAATGGCATCGTCCTGGGTACCAACGGCACGTGGGTGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS TCA 72 bp | GATGTTGCCACGAGCGAAGGCTTCGCAGACCGGAGGTaGGCACAATGCGCGGCTCACCGCCCACTGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: DVATSEGFADRR*AQCAAHRPLEE Trigger: CTCTTCCAGTGGGCGGTGAGCCGCGCATTGTGCTCACCTCCGGTCTGCGAAGCCTTCGCTCGTGGCAACATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS GCA 72 bp | GCGATCTTGCAAGAAGGGCGGCGGCTTGTGCAAGGCTaGCTCTGCGATGCGCACATGGCTGCGGCATACCTC | + |
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Preference number: 6 (lower is better) Translates to: AILQEGRRLVQG*LCDAHMAAAYL Trigger: GAGGTATGCCGCAGCCATGTGCGCATCGCAGAGGCAGCCTTGCACAAGCCGCCGCCCTTCTTGCAAGATCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 72 bp | GCCTGGGATACACTGAGCGCATCCCTGGATGTGGTCTaGAAGGCTTCACGGCGCGCGCCTGGCCCTGAACCA | + |
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Preference number: 6 (lower is better) Translates to: AWDTLSASLDVV*KASRRAPGPEP Trigger: TGGTTCAGGGCCAGGCGCGCGCCGTGAAGCCTTCAAGACCACATCCAGGGATGCGCTCAGTGTATCCCAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 90 bp | GGCCGCGTTGCGCACAGAGGCTTACACACCTCCTCGCTGCTGATGTaGCCACGAGCGAAGGCTTCGCAGACCGGAGGTGAGCACAATGCG | + |
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Preference number: 6 (lower is better) Translates to: GRVAHRGLHTSSLLM*PRAKASQTGGEHNA Trigger: CGCATTGTGCTCACCTCCGGTCTGCGAAGCCTTCGCTCGTGGCAACATCAGCAGCGAGGAGGTGTGTAAGCCTCTGTGCGCAACGCGGCC 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 90 bp | TTGAAGGCTTCACGGCGCGCGCCTGGCCCTGAACCATGCGTGATATaGTGGATCCAAGTCTGGAGCTGCGGCGTGAGACCCAGGCCGGTG | + |
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Preference number: 6 (lower is better) Translates to: LKASRRAPGPEPCVI*WIQVWSCGVRPRPV Trigger: CACCGGCCTGGGTCTCACGCCGCAGCTCCAGACTTGGATCCACAATATCACGCATGGTTCAGGGCCAGGCGCGCGCCGTGAAGCCTTCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 72 bp | GCGCACAGAGGCTTACACACCTCCTCGCTGCTGATGTaGCCACGAGCGAAGGCTTCGCAGACCGGAGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: AHRGLHTSSLLM*PRAKASQTGGE Trigger: CTCACCTCCGGTCTGCGAAGCCTTCGCTCGTGGCAACATCAGCAGCGAGGAGGTGTGTAAGCCTCTGTGCGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CAA 72 bp | GCCTCTTGGCAGCAGGAGGTCCAGAGAGAGGTCCCTTaGCTCAAGCTCCGAATGCACAGACCGGTAACCCAG | + |
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Preference number: 6 (lower is better) Translates to: ASWQQEVQREVP*LKLRMHRPVTQ Trigger: CTGGGTTACCGGTCTGTGCATTCGGAGCTTGAGCAAAGGGACCTCTCTCTGGACCTCCTGCTGCCAAGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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| CDS CCA 72 bp | CGTGGACGATGCCCACTTGAAACTGTCCATGCCTCTTaGCAGCAGGAGGTCCAGAGAGAGGTCCCTTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: RGRCPLETVHAS*QQEVQREVPLL Trigger: GAGCAAAGGGACCTCTCTCTGGACCTCCTGCTGCCAAGAGGCATGGACAGTTTCAAGTGGGCATCGTCCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034430.6 |
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