RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHST15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030930

Ensembl transcript IDs: ENSMUST00000077472.10, ENSMUST00000080215.6

Found 236 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATCGGATCCCAGAGCTGTCCAACCCTACACCCAGACAAACTCTCCTaGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCCGTAGCTTCC +
Preference number: 1 (lower is better)
Translates to: IGSQSCPTLHPDKLS*RKEGKAGLWPPVAS
Trigger: GGAAGCTACGGGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTGGACAGCTCTGGGATCCGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 90 bp CGAAGTGTCTTCGGTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTaGCAGGCTCAAGAGCCATCACCCAAAACACTGCCTGTGCTCTCA +
Preference number: 1 (lower is better)
Translates to: RSVFGTRSVFRFGLG*QAQEPSPKTLPVLS
Trigger: TGAGAGCACAGGCAGTGTTTTGGGTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTACCGAAGACACTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 90 bp ATGTGGTGTGTACACTTTCTGACGCTGGTGAACAGGATCCTGACCTaGGAACACAGCTTCACAGGCAGCATCCCTTGGCAACGCTCCAAT +
Preference number: 1 (lower is better)
Translates to: MWCVHFLTLVNRILT*EHSFTGSIPWQRSN
Trigger: ATTGGAGCGTTGCCAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGCGTCAGAAAGTGTACACACCACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 90 bp GCAAAGGGAACAGGGCTCATTTCTGATGTCACCGAAGGGCTGACTTaGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAAGCAGC +
Preference number: 1 (lower is better)
Translates to: AKGTGLISDVTEGLT*EYEQKRKSLHSPSS
Trigger: GCTGCTTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTCAGCCCTTCGGTGACATCAGAAATGAGCCCTGTTCCCTTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 90 bp GCACAGCAAAGGGAACAGGGCTCATTTCTGATGTCACCGAAGGGCTaGCTTGGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAA +
Preference number: 1 (lower is better)
Translates to: AQQREQGSFLMSPKG*LGNTNKNERASILQ
Trigger: TTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTCAGCCCTTCGGTGACATCAGAAATGAGCCCTGTTCCCTTTGCTGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 90 bp AGTGACACCACATGTGGCCCGAGCTTAGTTTGTGAGATGTGTTTCTaGGGACATTCTAAGGGTGTCTTGAGACTCACCCTTAGTGAGTTA +
Preference number: 1 (lower is better)
Translates to: SDTTCGPSLVCEMCF*GHSKGVLRLTLSEL
Trigger: TAACTCACTAAGGGTGAGTCTCAAGACACCCTTAGAATGTCCTCAGAAACACATCTCACAAACTAAGCTCGGGCCACATGTGGTGTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR GCA 90 bp ATAAACAAAGTGTATGGGCAGAATAGGTCAGAGAGACGAGCCTACTaGCAAAAGCTGACTTCTGAGTTTCTTCTGAGCACAGCAAAGGGA +
Preference number: 1 (lower is better)
Translates to: INKVYGQNRSERRAY*QKLTSEFLLSTAKG
Trigger: TCCCTTTGCTGTGCTCAGAAGAAACTCAGAAGTCAGCTTTTGGCAGTAGGCTCGTCTCTCTGACCTATTCTGCCCATACACTTTGTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp GGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGTCTTCGGCAGGTGCCTTGGACATaGGAAGAGGATTGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: GKVSYTLAHGFGNTKCLRQVPWT*EEDWVG
Trigger: CCCCACCCAATCCTCTTCTCATGTCCAAGGCACCTG...CCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR GCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCCAGGTGGACGAGCCTTaGAATCAAGAGCAGAGCTGC +
Preference number: 2 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLQVDEP*NQEQSC
Trigger: GCAGCTCTGCTCTTGATTGCAAGGCTCGTCCACCTG...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAGAAGAGGATTGGGTaGGGCTCCAGCGGCTTTCTC +
Preference number: 2 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWEKRIG*GSSGFL
Trigger: GAGAAAGCCGCTGGAGCCCCACCCAATCCTCTTCTC...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCAACAGGGCTCATTTCTaGTGTCACCGAAGGGCTGAC +
Preference number: 2 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLNRAHF*CHRRAD
Trigger: GTCAGCCCTTCGGTGACATCAGAAATGAGCCCTGTT...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp GGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGTCTTCGGGGAACACAGGCCACATaGCACACAGCCCCTTCAGTA +
Preference number: 2 (lower is better)
Translates to: GKVSYTLAHGFGNTKCLRGTQAT*HTAPSV
Trigger: TACTGAAGGGGCTGTGTGTCATGTGGCCTGTGTTCC...CCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCAGTGACCCCCACAAATaGGGAGGGCTTCACTTCCTT +
Preference number: 2 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLSDPHK*GGLHFL
Trigger: AAGGAAGTGAAGCCCTCCCCATTTGTGGGGGTCACT...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTGATCCACTGCCCTCCTaGGATCCAAGGCACTCTGGG +
Preference number: 2 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGDPLPS*DPRHSG
Trigger: CCCAGAGTGCCTTGGATCTCAGGAGGGCAGTGGATC...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGCATCAACAAGACAGCTaGGAGGGCCCTGCTCAGTAT +
Preference number: 2 (lower is better)
Translates to: QGREGVIHPGTRLWEYEVHQQDS*EGPAQY
Trigger: ATACTGAGCAGGGCCCTCTCAGCTGTCTTGTTGATG...CACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTGAGAAGAGGATTGGGTaGGGCTCCAGCGGCTTTCTC +
Preference number: 2 (lower is better)
Translates to: RASILQAALFSVHMGLSIEKRIG*GSSGFL
Trigger: GAGAAAGCCGCTGGAGCCCCACCCAATCCTCTTCTC...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp GCTGGTGAACAGGATCCTGACCTGAGAACACAGCTTCACAGGCAGCATCCCTTGCCAGACAAACTCTCCTaGAGGAAGGAAGGCAAGGCT +
Preference number: 2 (lower is better)
Translates to: AGEQDPDLRTQLHRQHPLPDKLS*RKEGKA
Trigger: AGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGG...CAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CAA 90 bp TTTAAAATAGTTCCCACACCAGGTGCCTTGGACATGAGAAGAGGATaGGGTGGGGCTCCAGCGGCTTTCTCCACGCTGTGGGTGACAGTT +
Preference number: 2 (lower is better)
Translates to: FKIVPTPGALDMRRG*GGAPAAFSTLWVTV
Trigger: AACTGTCACCCACAGCGTGGAGAAAGCCGCTGGAGCCCCACCCAATCCTCTTCTCATGTCCAAGGCACCTGGTGTGGGAACTATTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTCTGGGATATAACACGTaGGGGGCAGCCCCAGAACAT +
Preference number: 2 (lower is better)
Translates to: RASILQAALFSVHMGLSILGYNT*GAAPEH
Trigger: ATGTTCTGGGGCTGCCCCTCACGTGTTATATCCCAG...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGCTGGGATATAACACGTaGGGGGCAGCCCCAGAACAT +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTLGYNT*GAAPEH
Trigger: ATGTTCTGGGGCTGCCCCTCACGTGTTATATCCCAG...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR GCA 90 bp TGGCAACGCTCCAATGAAAAGCTTTGTGACATCCCCACCTTGTCCTGTGTGCCACAGGTGGACGAGCCTTaGAATCAAGAGCAGAGCTGC +
Preference number: 2 (lower is better)
Translates to: WQRSNEKLCDIPTLSCVPQVDEP*NQEQSC
Trigger: GCAGCTCTGCTCTTGATTGCAAGGCTCGTCCACCTG...TGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCATTGGAGCGTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CAA 90 bp GAACATGGCAAGGAAAGCTTTAAAATAGTTCCCACACCAGGTGCCTaGGACATGAGAAGAGGATTGGGTGGGGCTCCAGCGGCTTTCTCC +
Preference number: 2 (lower is better)
Translates to: EHGKESFKIVPTPGA*DMRRGLGGAPAAFS
Trigger: GGAGAAAGCCGCTGGAGCCCCACCCAATCCTCTTCTCATGTCCAAGGCACCTGGTGTGGGAACTATTTTAAAGCTTTCCTTGCCATGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CAA 90 bp TACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTaGGGAATACGAAGTGTCTTCGGTACCAGGTCTGTGTTTCGCTTT +
Preference number: 2 (lower is better)
Translates to: YTTREGRCHTPWHTA*GIRSVFGTRSVFRF
Trigger: AAAGCGAAACACAGACCTGGTACCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATCAAGAGCAGAGCTGCTaGACATGGCAAGGAAAGCTT +
Preference number: 2 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYQEQSC*TWQGKL
Trigger: AAGCTTTCCTTGCCATGTTCAGCAGCTCTGCTCTTG...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGCTTCTGAGTTTCTTCTaGGCACAGCAAAGGGAACAG +
Preference number: 2 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWLLSFF*AQQREQ
Trigger: CTGTTCCCTTTGCTGTGCTCAGAAGAAACTCAGAAG...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGAACAGGATCCTGACCTaGGAACACAGCTTCACAGGC +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTNRILT*EHSFTG
Trigger: GCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTT...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGCATCAACAAGACAGCTaGGAGGGCCCTGCTCAGTAT +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTHQQDS*EGPAQY
Trigger: ATACTGAGCAGGGCCCTCTCAGCTGTCTTGTTGATG...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR GCA 90 bp CAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGCATCACCCAAAACACTaGCTGTGCTCTCAACAAGAG +
Preference number: 2 (lower is better)
Translates to: QGREGVIHPGTRLWEYEVHHPKH*LCSQQE
Trigger: CTCTTGTTGAGAGCACAGGCAGTGTTTTGGGTGATG...CACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTCCAGACAAACTCTCCTaGAGGAAGGAAGGCAAGGCT +
Preference number: 2 (lower is better)
Translates to: RASILQAALFSVHMGLSIPDKLS*RKEGKA
Trigger: AGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGG...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp CAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGAAGGGAGAATTGTCCTaGAACACAGGCCACATGACA +
Preference number: 2 (lower is better)
Translates to: QGREGVIHPGTRLWEYEVKGELS*NTGHMT
Trigger: TGTCATGTGGCCTGTGTTCCAGGACAATTCTCCCTT...CACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAAGATCCACTGCCCTCCTaGGATCCAAGGCACTCTGGG +
Preference number: 2 (lower is better)
Translates to: PFPLFDALRCSVLALTAKDPLPS*DPRHSG
Trigger: CCCAGAGTGCCTTGGATCTCAGGAGGGCAGTGGATC...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTAGATCCAAGGCACTCTaGGAACAGACAGAAGCCTAC +
Preference number: 2 (lower is better)
Translates to: RASILQAALFSVHMGLSIRSKAL*EQTEAY
Trigger: GTAGGCTTCTGTCTGTTCCCAGAGTGCCTTGGATCT...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGAGATCCAAGGCACTCTaGGAACAGACAGAAGCCTAC +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTRSKAL*EQTEAY
Trigger: GTAGGCTTCTGTCTGTTCCCAGAGTGCCTTGGATCT...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGTCTGTGTTTCGCTTTaGTTTGGGGTGACAGGCTCA +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTVCVSL*FGVTGS
Trigger: TGAGCCTGTCACCCCAAACCAAAGCGAAACACAGAC...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTCAAGAGCAGAGCTGCTaGACATGGCAAGGAAAGCTT +
Preference number: 2 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGQEQSC*TWQGKL
Trigger: AAGCTTTCCTTGCCATGTTCAGCAGCTCTGCTCTTG...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTCTTCTGAGTTTCTTCTaGGCACAGCAAAGGGAACAG +
Preference number: 2 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCLLSFF*AQQREQ
Trigger: CTGTTCCCTTTGCTGTGCTCAGAAGAAACTCAGAAG...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTCCAAAAGCTGACTTCTaGGTTTCTTCTGAGCACAGC +
Preference number: 2 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCPKADF*VSSEHS
Trigger: GCTGTGCTCAGAAGAAACTCAGAAGTCAGCTTTTGG...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR GCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCAGGGCCAGTCAAATaGGAGAAGCAGTTTGTTTTA +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTAGPVK*EKQFVL
Trigger: TAAAACAAACTGCTTCTCGCATTTGACTGGCCCTGC...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp TACAGAATAAATGTGACTCGCATATCATACCTTACACGACAAGGGAGGGAAGGTCCTCTTCCTACCCACTaGGTGCCAGAGATCCACTGC +
Preference number: 2 (lower is better)
Translates to: YRINVTRISYLTRQGREGPLPTH*VPEIHC
Trigger: GCAGTGGATCTCTGGCACCCAGTGGGTAGGAAGAGG...ACCTTCCCTCCCTTGTCGTGTAAGGTATGATATGCGAGTCACATTTATTCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CAA 90 bp ATCCCTTGGCAACGCTCCAATGAAAAGCTTTGTGACATCCCCACCTaGTCCTGTGTGCCAAGTGGGTTTAAGTTGTTCTCTCTGGTATTC +
Preference number: 2 (lower is better)
Translates to: IPWQRSNEKLCDIPT*SCVPSGFKLFSLVF
Trigger: GAATACCAGAGAGAACAACTTAAACCCACTTGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCATTGGAGCGTTGCCAAGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR TCA 90 bp TACAGAATAAATGTGACTCGCATATCATACCTTACACGACAAGGGAGGGAAGGTAACAGGATCCTGACCTaGGAACACAGCTTCACAGGC +
Preference number: 2 (lower is better)
Translates to: YRINVTRISYLTRQGREGNRILT*EHSFTG
Trigger: GCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTT...ACCTTCCCTCCCTTGTCGTGTAAGGTATGATATGCGAGTCACATTTATTCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGTTAAGTTGTTCTCTCTaGTATTCCCTGGGGTCTTTT +
Preference number: 2 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTLSCSL*YSLGSF
Trigger: AAAAGACCCCAGGGAATACCAGAGAGAACAACTTAA...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CAA 90 bp TGGTGTGGGGCAGTAAGATATGTCCTGGAAATGACAGGCGAAGGGTaGGAGAAATTAATTCATAAAGGCATCATGTCTCTAATGGAGGAG +
Preference number: 2 (lower is better)
Translates to: WCGAVRYVLEMTGEG*EKLIHKGIMSLMEE
Trigger: CTCCTCCATTAGAGACATGATGCCTTTATGAATTAATTTCTCCAACCCTTCGCCTGTCATTTCCAGGACATATCTTACTGCCCCACACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 72 bp CACACCAGGTGCCTTGGACATGAGAAGAGGATTGGGTaGGGCTCCAGCGGCTTTCTCCACGCTGTGGGTGAC +
Preference number: 3 (lower is better)
Translates to: HTRCLGHEKRIG*GSSGFLHAVGD
Trigger: GTCACCCACAGCGTGGAGAAAGCCGCTGGAGCCCCACCCAATCCTCTTCTCATGTCCAAGGCACCTGGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGCGCTTGCGCTTGAGCTaGCGCTCTCTCTCGCTCTCT +
Preference number: 3 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWRLRLS*RSLSLS
Trigger: AGAGAGCGAGAGAGAGCGCAAGCTCAAGCGCAAGCG...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp TGGGTGGGGCTCCAGCGGCTTTCTCCACGCTGTGGGTaGCAGTTCTCCGCCTGGAGACTTTTAAAGTCATGG +
Preference number: 3 (lower is better)
Translates to: WVGLQRLSPRCG*QFSAWRLLKSW
Trigger: CCATGACTTTAAAAGTCTCCAGGCGGAGAACTGTCACCCACAGCGTGGAGAAAGCCGCTGGAGCCCCACCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp CATGCTGATGCCCAGAGCTCTCCCGGAACCTTCCAATaGGCTGAGAGTCCCATCTCCAACAAGGGTGGACCG +
Preference number: 3 (lower is better)
Translates to: HADAQSSPGTFQ*AESPISNKGGP
Trigger: CGGTCCACCCTTGTTGGAGATGGGACTCTCAGCTCATTGGAAGGTTCCGGGAGAGCTCTGGGCATCAGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp GATTTTCCCACTGGCTGCCGAGCCAAGTGGCCACCGTaGGAGAAGGGAGAATTGTCCTGGAACACAGGCCAC +
Preference number: 3 (lower is better)
Translates to: DFPTGCRAKWPP*EKGELSWNTGH
Trigger: GTGGCCTGTGTTCCAGGACAATTCTCCCTTCTCTCACGGTGGCCACTTGGCTCGGCAGCCAGTGGGAAAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR GCA 72 bp CTTCCTCTTCCTACCCACTGGGTGCCAGAGATCCACTaGCCTCCTGAGATCCAAGGCACTCTGGGAACAGAC +
Preference number: 3 (lower is better)
Translates to: LPLPTHWVPEIH*PPEIQGTLGTD
Trigger: GTCTGTTCCCAGAGTGCCTTGGATCTCAGGAGGGCAGTGGATCTCTGGCACCCAGTGGGTAGGAAGAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 72 bp CAGAGCTGTCCAACCCTACACCCAGACAAACTCTCCTaGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCC +
Preference number: 3 (lower is better)
Translates to: QSCPTLHPDKLS*RKEGKAGLWPP
Trigger: GGGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTGGACAGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGACATGAGAAGAGGATaGGGTGGGGCTCCAGCGGCT +
Preference number: 3 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYDMRRG*GGAPAA
Trigger: AGCCGCTGGAGCCCCACCCAATCCTCTTCTCATGTC...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 72 bp AAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATaGCCTCCCGTAGCTTCCTCTTCCTACCCACTGGGT +
Preference number: 3 (lower is better)
Translates to: KLSWRKEGKAGL*PPVASSSYPLG
Trigger: ACCCAGTGGGTAGGAAGAGGAAGCTACGGGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR GCA 72 bp GCAGAACTCACACAGTCGAGCAACTGCACAGCCTCCTaGTGCCAAAGCCCAGCTTTTCTCACACGTCCAAGT +
Preference number: 3 (lower is better)
Translates to: AELTQSSNCTAS*CQSPAFLTRPS
Trigger: ACTTGGACGTGTGAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAGTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 72 bp GGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTaGGAATACGAAGTGTCTTCGGTACCAGGTCTGTGT +
Preference number: 3 (lower is better)
Translates to: GREGVIHPGTRL*EYEVSSVPGLC
Trigger: ACACAGACCTGGTACCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp AAAACATCCAAGGGAGCAGAAAAGAGAGGCAGGGCCAGTCAAATGCGAGAAGCAGACATGAGAAGAGGATaGGGTGGGGCTCCAGCGGCT +
Preference number: 3 (lower is better)
Translates to: KTSKGAEKRGRASQMREADMRRG*GGAPAA
Trigger: AGCCGCTGGAGCCCCACCCAATCCTCTTCTCATGTC...TGCTTCTCGCATTTGACTGGCCCTGCCTCTCTTTTCTGCTCCCTTGGATGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp CTGCTGCCAAAGCCCAGCTTTTCTCACACGTCCAAGTaGCAGTCGGGCATGTGGTGTGTACACTTTCTGACG +
Preference number: 3 (lower is better)
Translates to: LLPKPSFSHTSK*QSGMWCVHFLT
Trigger: CGTCAGAAAGTGTACACACCACATGCCCGACTGTCACTTGGACGTGTGAGAAAAGCTGGGCTTTGGCAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTCCCACACCAGGTGCCTaGGACATGAGAAGAGGATTG +
Preference number: 3 (lower is better)
Translates to: RASILQAALFSVHMGLSIPTPGA*DMRRGL
Trigger: CAATCCTCTTCTCATGTCCAAGGCACCTGGTGTGGG...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp TTCGGTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTaGCAGGCTCAAGAGCCATCACCCAAAACACTGCCT +
Preference number: 3 (lower is better)
Translates to: FGTRSVFRFGLG*QAQEPSPKTLP
Trigger: AGGCAGTGTTTTGGGTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTACCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR GCA 72 bp AGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATaGAAGGCCTGCTGGGATATAACACGTGAGGGGCAG +
Preference number: 3 (lower is better)
Translates to: SSVLCPHGVVDL*KACWDITREGQ
Trigger: CTGCCCCTCACGTGTTATATCCCAGCAGGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 72 bp GTGTCTTCGGTACCAGGTCTGTGTTTCGCTTTGGTTTaGGGTGACAGGCTCAAGAGCCATCACCCAAAACAC +
Preference number: 3 (lower is better)
Translates to: VSSVPGLCFALV*GDRLKSHHPKH
Trigger: GTGTTTTGGGTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTACCGAAGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CCA 72 bp ACGAAGTGTCTTCGGTACCAGGTCTGTGTTTCGCTTTaGTTTGGGGTGACAGGCTCAAGAGCCATCACCCAA +
Preference number: 3 (lower is better)
Translates to: TKCLRYQVCVSL*FGVTGSRAITQ
Trigger: TTGGGTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTACCGAAGACACTTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp GGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGTCTTCGGCATTCTAAGGGTGTCTaGAGACTCACCCTTAGTGAG +
Preference number: 3 (lower is better)
Translates to: GKVSYTLAHGFGNTKCLRHSKGV*RLTLSE
Trigger: CTCACTAAGGGTGAGTCTCAAGACACCCTTAGAATG...CCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAACCCACACCAGGTGCCTaGGACATGAGAAGAGGATTG +
Preference number: 3 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQPTPGA*DMRRGL
Trigger: CAATCCTCTTCTCATGTCCAAGGCACCTGGTGTGGG...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACGTGAGTTACAGAACTTaGGCTGCACATGACAGAGAA +
Preference number: 3 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHVSYRT*AAHDRE
Trigger: TTCTCTGTCATGTGCAGCCAAAGTTCTGTAACTCAC...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR-3UTR CAA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGCATTCTAAGGGTGTCTaGAGACTCACCCTTAGTGAG +
Preference number: 3 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTHSKGV*RLTLSE
Trigger: CTCACTAAGGGTGAGTCTCAAGACACCCTTAGAATG...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp TCTTCTGAGCACAGCAAAGGGAACAGGGCTCATTTCTaGTGTCACCGAAGGGCTGACTTGGGAATACGAACA +
Preference number: 3 (lower is better)
Translates to: SSEHSKGNRAHF*CHRRADLGIRT
Trigger: TGTTCGTATTCCCAAGTCAGCCCTTCGGTGACATCAGAAATGAGCCCTGTTCCCTTTGCTGTGCTCAGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp ACATGTGGCCCGAGCTTAGTTTGTGAGATGTGTTTCTaGGGACATTCTAAGGGTGTCTTGAGACTCACCCTT +
Preference number: 3 (lower is better)
Translates to: TCGPSLVCEMCF*GHSKGVLRLTL
Trigger: AAGGGTGAGTCTCAAGACACCCTTAGAATGTCCTCAGAAACACATCTCACAAACTAAGCTCGGGCCACATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR GCA 72 bp ATGAAAAGCTTTGTGACATCCCCACCTTGTCCTGTGTaGCAAGTGGGTTTAAGTTGTTCTCTCTGGTATTCC +
Preference number: 3 (lower is better)
Translates to: MKSFVTSPPCPV*QVGLSCSLWYS
Trigger: GGAATACCAGAGAGAACAACTTAAACCCACTTGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR TCA 72 bp GTGAGATGTGTTTCTGAGGACATTCTAAGGGTGTCTTaGGACTCACCCTTAGTGAGTTACAGAACTTTGGCT +
Preference number: 3 (lower is better)
Translates to: VRCVSEDILRVS*DSPLVSYRTLA
Trigger: AGCCAAAGTTCTGTAACTCACTAAGGGTGAGTCTCAAGACACCCTTAGAATGTCCTCAGAAACACATCTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCCACCATCCATCACGCTaGGGTTGCTGGGAAAGCCCC +
Preference number: 4 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLHHPSR*GCWESP
Trigger: GGGGCTTTCCCAGCAACCCCAGCGTGATGGATGGTG...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp GCTGGTGAACAGGATCCTGACCTGAGAACACAGCTTCACAGGCAGCATCCCTTGGCAGCCTGCAGTCCTTaGTGGATCTGGTGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: AGEQDPDLRTQLHRQHPLAACSP*WIWCAA
Trigger: GGCTGCACACCAGATCCATCAAGGACTGCAGGCTGC...CAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCCAGCGCAGGCGGAAGTaGTTGCCCTGCACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAQRRRK*LPCTWD
Trigger: GTCCCACGTGCAGGGCAAGCACTTCCGCCTGCGCTG...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTCAGCGCAGGCGGAAGTaGTTGCCCTGCACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: RASILQAALFSVHMGLSIQRRRK*LPCTWD
Trigger: GTCCCACGTGCAGGGCAAGCACTTCCGCCTGCGCTG...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGATCGCTTCCCCTTCCTaGAGCGCAAAAACCCACCCC +
Preference number: 4 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWIASPS*SAKTHP
Trigger: GGGGTGGGTTTTTGCGCTTCAGGAAGGGGAAGCGAT...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCGGAGCTGCCTGGTTGTaGACTCAATCCTGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASGAAWL*TQSWQQ
Trigger: TTGCTGCCAGGATTGAGTTCACAACCAGGCAGCTCC...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCGCAGGCGGAAGTGCTTaGCCTGCACGTGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAAGGSA*PARGTG
Trigger: ACCTGTCCCACGTGCAGGGCAAGCACTTCCGCCTGC...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGCTTGCTGGGCTGCTCTaGAGAGGCAGCCTGCAGTCC +
Preference number: 4 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTLAGLL*RGSLQS
Trigger: GGACTGCAGGCTGCCTCTGCAGAGCAGCCCAGCAAG...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCACGCCGTGTGTTGGATaGAGGGCTCTTGGTCATCAG +
Preference number: 4 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASTPCVG*RALGHQ
Trigger: CTGATGACCAAGAGCCCTGCATCCAACACACGGCGT...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACTGCTTGCCCTGCACGTaGGACAGGTGGCCCCAGAAA +
Preference number: 4 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHCLPCT*DRWPQK
Trigger: TTTCTGGGGCCACCTGTCCCACGTGCAGGGCAAGCA...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GCTGGTGAACAGGATCCTGACCTGAGAACACAGCTTCACAGGCAGCATCCCTTGGGTCGTACAGGTCAGTaGTTCCACACTTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: AGEQDPDLRTQLHRQHPLGRTGQ*FHTWAA
Trigger: GGCAGCCCAAGTGTGGAACCACTGACCTGTACGACC...CAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CTCCGCCTGGAGACTTTTAAAGTCATGGCAATGACAGAGTCAGTGGGCCCAGCTGCATACAGGCCAACCTaGAGCCTCACGGGCATGGCA +
Preference number: 4 (lower is better)
Translates to: LRLETFKVMAMTESVGPAAYRPT*SLTGMA
Trigger: TGCCATGCCCGTGAGGCTCCAGGTTGGCCTGTATGC...AGCTGGGCCCACTGACTCTGTCATTGCCATGACTTTAAAAGTCTCCAGGCGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp TGGCAACGCTCCAATGAAAAGCTTTGTGACATCCCCACCTTGTCCTGTGTGCCAGCAGCCTGCAGTCCTTaGTGGATCTGGTGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: WQRSNEKLCDIPTLSCVPAACSP*WIWCAA
Trigger: GGCTGCACACCAGATCCATCAAGGACTGCAGGCTGC...TGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCATTGGAGCGTTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGTTCCGGGTCCACCAGTaGGGCTCCTTGATGGCTGAG +
Preference number: 4 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTFRVHQ*GSLMAE
Trigger: CTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAA...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp GCTGGTGAACAGGATCCTGACCTGAGAACACAGCTTCACAGGCAGCATCCCTTGGTCATCAGAGCTTCCTaGTTCTCACTCAGAGGCCCC +
Preference number: 4 (lower is better)
Translates to: AGEQDPDLRTQLHRQHPLVIRAS*FSLRGP
Trigger: GGGGCCTCTGAGTGAGAAGCAGGAAGCTCTGATGAC...CAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGACGCCGTGTGTTGGATaGAGGGCTCTTGGTCATCAG +
Preference number: 4 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWTPCVG*RALGHQ
Trigger: CTGATGACCAAGAGCCCTGCATCCAACACACGGCGT...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGTCTTCGGTCACGCTGGGGTTGCTaGGAAAGCCCCCATAATGGA +
Preference number: 4 (lower is better)
Translates to: GKVSYTLAHGFGNTKCLRSRWGC*ESPHNG
Trigger: TCCATTATGGGGGCTTTCCCAGCAACCCCAGCGTGA...CCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGTCACGCTGGGGTTGCTaGGAAAGCCCCCATAATGGA +
Preference number: 4 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWSRWGC*ESPHNG
Trigger: TCCATTATGGGGGCTTTCCCAGCAACCCCAGCGTGA...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGTCAGGTAGGGGTCAGTaGTGTTCCTGCCCGAGAACT +
Preference number: 4 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWSGRGQ*CSCPRT
Trigger: AGTTCTCGGGCAGGAACACCACTGACCCCTACCTGA...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCGCATGGATGAAGTCTTaGGTCAGGAATGGTGGCTCG +
Preference number: 4 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASAWMKS*VRNGGS
Trigger: CGAGCCACCATTCCTGACCCAAGACTTCATCCATGC...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATCAGGACGCCGTGTGTTaGATGCAGGGCTCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYQDAVC*MQGSWS
Trigger: TGACCAAGAGCCCTGCATCCAACACACGGCGTCCTG...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp TGGCAACGCTCCAATGAAAAGCTTTGTGACATCCCCACCTTGTCCTGTGTGCCAACTTGGGCTGCCCAATaGTGTAGAAGTGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: WQRSNEKLCDIPTLSCVPTWAAQ*CRSGAG
Trigger: GCCTGCCCCACTTCTACATCATTGGGCAGCCCAAGT...TGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCATTGGAGCGTTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCAGAATCTTCTGGGTaGTGGGCCACATGGGTCCCA +
Preference number: 4 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTAESSG*WATWVP
Trigger: TGGGACCCATGTGGCCCATCACCCAGAAGATTCTGC...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACGGTCAGTGGTGTTCCTaGCCGAGAACTCCTCATACC +
Preference number: 4 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHGQWCS*PRTPHT
Trigger: GGTATGAGGAGTTCTCGGGCAGGAACACCACTGACC...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAACTTGCTGGGCTGCTCTaGAGAGGCAGCCTGCAGTCC +
Preference number: 4 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQLAGLL*RGSLQS
Trigger: GGACTGCAGGCTGCCTCTGCAGAGCAGCCCAGCAAG...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCTTCATCTTGCTGGGCTaGTCTGCAGAGGCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAFILLG*SAEAAC
Trigger: GCAGGCTGCCTCTGCAGAGCAGCCCAGCAAGATGAA...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTTCATCTTGCTGGGCTaGTCTGCAGAGGCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: RASILQAALFSVHMGLSIFILLG*SAEAAC
Trigger: GCAGGCTGCCTCTGCAGAGCAGCCCAGCAAGATGAA...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACGTCATCAGAGCTTCCTaGTTCTCACTCAGAGGCCCC +
Preference number: 4 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHVIRAS*FSLRGP
Trigger: GGGGCCTCTGAGTGAGAAGCAGGAAGCTCTGATGAC...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCGTCATCCAAGACCTGTaGCAGCCTTGTGTTGAAAGG +
Preference number: 4 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASVIQDL*QPCVER
Trigger: CCTTTCAACACAAGGCTGGCACAGGTCTTGGATGAC...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp AAAACATCCAAGGGAGCAGAAAAGAGAGGCAGGGCCAGTCAAATGCGAGAAGCATGCTTGCCCTGCACGTaGGACAGGTGGCCCCAGAAA +
Preference number: 4 (lower is better)
Translates to: KTSKGAEKRGRASQMREACLPCT*DRWPQK
Trigger: TTTCTGGGGCCACCTGTCCCACGTGCAGGGCAAGCA...TGCTTCTCGCATTTGACTGGCCCTGCCTCTCTTTTCTGCTCCCTTGGATGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCGGTCGTACAGGTCAGTaGTTCCACACTTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAGRTGQ*FHTWAA
Trigger: GGCAGCCCAAGTGTGGAACCACTGACCTGTACGACC...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCTCTTATTCATCTTGCTaGGCTGCTCTGCAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASSYSSC*AALQRQ
Trigger: CTGCCTCTGCAGAGCAGCCCAGCAAGATGAATAAGA...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGCAGGACGCCGTGTGTTaGATGCAGGGCTCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTQDAVC*MQGSWS
Trigger: TGACCAAGAGCCCTGCATCCAACACACGGCGTCCTG...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTATCGCTTCCCCTTCCTaGAGCGCAAAAACCCACCCC +
Preference number: 4 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCIASPS*SAKTHP
Trigger: GGGGTGGGTTTTTGCGCTTCAGGAAGGGGAAGCGAT...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp GGACGAGCCTTGCAATCAAGAGCAGAGCTGCTGAACATGGCAAGGAAAGCTTTAACTTGGGCTGCCCAATaGTGTAGAAGTGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: GRALQSRAELLNMARKALTWAAQ*CRSGAG
Trigger: GCCTGCCCCACTTCTACATCATTGGGCAGCCCAAGT...TAAAGCTTTCCTTGCCATGTTCAGCAGCTCTGCTCTTGATTGCAAGGCTCGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGACCAGTGCGGCTCCTTaGTGGCTGAGAATTTCACTT +
Preference number: 4 (lower is better)
Translates to: QGREGVIHPGTRLWEYEVTSAAP*WLRISL
Trigger: AAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGT...CACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp GGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGTCTTCGGACCAGTGCGGCTCCTTaGTGGCTGAGAATTTCACTT +
Preference number: 4 (lower is better)
Translates to: GKVSYTLAHGFGNTKCLRTSAAP*WLRISL
Trigger: AAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGT...CCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCGTTGAAAGGCATGGATaGAGTCTTGGGTCAGGAATG +
Preference number: 4 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLVERHG*SLGSGM
Trigger: CATTCCTGACCCAAGACTTCATCCATGCCTTTCAAC...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp AAAACATCCAAGGGAGCAGAAAAGAGAGGCAGGGCCAGTCAAATGCGAGAAGCAGCAGAATCTTCTGGGTaGTGGGCCACATGGGTCCCA +
Preference number: 4 (lower is better)
Translates to: KTSKGAEKRGRASQMREAAESSG*WATWVP
Trigger: TGGGACCCATGTGGCCCATCACCCAGAAGATTCTGC...TGCTTCTCGCATTTGACTGGCCCTGCCTCTCTTTTCTGCTCCCTTGGATGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGCCTTGGCAGGCAACTTaGTGTTTGTGTGTGTCTTCG +
Preference number: 4 (lower is better)
Translates to: QGREGVIHPGTRLWEYEVPWQAT*CLCVSS
Trigger: CGAAGACACACACAAACAGCAAGTTGCCTGCCAAGG...CACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTGGTCAGTGGTGTTCCTaGCCGAGAACTCCTCATACC +
Preference number: 4 (lower is better)
Translates to: RASILQAALFSVHMGLSIGQWCS*PRTPHT
Trigger: GGTATGAGGAGTTCTCGGGCAGGAACACCACTGACC...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCGCTCTTTCACATCACTaGGGTTCTCACCATCCATCA +
Preference number: 4 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLALSHH*GSHHPS
Trigger: TGATGGATGGTGAGAACCCCAGTGATGTGAAAGAGC...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GCTGGTGAACAGGATCCTGACCTGAGAACACAGCTTCACAGGCAGCATCCCTTGTCTTATTCATCTTGCTaGGCTGCTCTGCAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: AGEQDPDLRTQLHRQHPLSYSSC*AALQRQ
Trigger: CTGCCTCTGCAGAGCAGCCCAGCAAGATGAATAAGA...CAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGCATGGATGAAGTCTTaGGTCAGGAATGGTGGCTCG +
Preference number: 4 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYAWMKS*VRNGGS
Trigger: CGAGCCACCATTCCTGACCCAAGACTTCATCCATGC...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATTGGATGCAGGGCTCTTaGTCATCAGAGCTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYWMQGS*SSELPA
Trigger: AGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCA...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
3UTR CAA 72 bp TACGAAGTGTCTTCGGTACCAGGTCTGTGTTTCGCTTaGGTTTGGGGTGACAGGCTCAAGAGCCATCACCCA +
Preference number: 4 (lower is better)
Translates to: YEVSSVPGLCFA*VWGDRLKSHHP
Trigger: TGGGTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTACCGAAGACACTTCGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp GGACGAGCCTTGCAATCAAGAGCAGAGCTGCTGAACATGGCAAGGAAAGCTTTAGGAGCTGCCTGGTTGTaGACTCAATCCTGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: GRALQSRAELLNMARKALGAAWL*TQSWQQ
Trigger: TTGCTGCCAGGATTGAGTTCACAACCAGGCAGCTCC...TAAAGCTTTCCTTGCCATGTTCAGCAGCTCTGCTCTTGATTGCAAGGCTCGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGACGCAGGCGCGCAGTaGATAATCCAGCATGCAATT +
Preference number: 4 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTDAGAQ*IIQHAI
Trigger: AATTGCATGCTGGATTATTCACTGCGCGCCTGCGTC...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACGTGCCAGCCTTGTGTTaGAAGGCCCATAGAATTCAC +
Preference number: 4 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHVPALC*KAHRIH
Trigger: GTGAATTCTATGGGCCTTTCAACACAAGGCTGGCAC...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCGCAAGCAAGTTCATCTaGTTACTGTCCACACGAAAC +
Preference number: 4 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASASKFI*LLSTRN
Trigger: GTTTCGTGTGGACAGTAAGCAGATGAACTTGCTTGC...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAAGCAGGCGGAAGTGCTTaGCCTGCACGTGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: PFPLFDALRCSVLALTAKAGGSA*PARGTG
Trigger: ACCTGTCCCACGTGCAGGGCAAGCACTTCCGCCTGC...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GCTGGTGAACAGGATCCTGACCTGAGAACACAGCTTCACAGGCAGCATCCCTTGTCTTCGGGGAACAGCTaGACGCAGCAATTAATGCAA +
Preference number: 4 (lower is better)
Translates to: AGEQDPDLRTQLHRQHPLSSGNS*TQQLMQ
Trigger: TTGCATTAATTGCTGCGTCCAGCTGTTCCCCGAAGA...CAAGGGATGCTGCCTGTGAAGCTGTGTTCTCAGGTCAGGATCCTGTTCACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GACTTGGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTGCATACAGGCCAACCTaGAGCCTCACGGGCATGGCA +
Preference number: 4 (lower is better)
Translates to: DLGIRTKTKEPPFSKQLCAYRPT*SLTGMA
Trigger: TGCCATGCCCGTGAGGCTCCAGGTTGGCCTGTATGC...ACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CTCCGCCTGGAGACTTTTAAAGTCATGGCAATGACAGAGTCAGTGGGCCCAGCTGAAGTAGAGATAGTCTaGGTACAACCTCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: LRLETFKVMAMTESVGPAEVEIV*VQPLHR
Trigger: CCTGTGGAGAGGTTGTACTCAGACTATCTCTACTTC...AGCTGGGCCCACTGACTCTGTCATTGCCATGACTTTAAAAGTCTCCAGGCGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp AAAACATCCAAGGGAGCAGAAAAGAGAGGCAGGGCCAGTCAAATGCGAGAAGCAGACGCAGGCGCGCAGTaGATAATCCAGCATGCAATT +
Preference number: 4 (lower is better)
Translates to: KTSKGAEKRGRASQMREADAGAQ*IIQHAI
Trigger: AATTGCATGCTGGATTATTCACTGCGCGCCTGCGTC...TGCTTCTCGCATTTGACTGGCCCTGCCTCTCTTTTCTGCTCCCTTGGATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAATTCCGGGTCCACCAGTaGGGCTCCTTGATGGCTGAG +
Preference number: 4 (lower is better)
Translates to: PFPLFDALRCSVLALTAKFRVHQ*GSLMAE
Trigger: CTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAA...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GGACGAGCCTTGCAATCAAGAGCAGAGCTGCTGAACATGGCAAGGAAAGCTTTATGGATGCAGGGCTCTTaGTCATCAGAGCTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: GRALQSRAELLNMARKALWMQGS*SSELPA
Trigger: AGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCA...TAAAGCTTTCCTTGCCATGTTCAGCAGCTCTGCTCTTGATTGCAAGGCTCGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCAACTCTTGTCTCTTaGGATCTTGTAAGTCCGGGA +
Preference number: 4 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTATLVS*DLVSPG
Trigger: TCCCGGACTTACAAGATCTCAAGAGACAAGAGTTGC...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTGTTGAAAGGCATGGATaGAGTCTTGGGTCAGGAATG +
Preference number: 4 (lower is better)
Translates to: RASILQAALFSVHMGLSIVERHG*SLGSGM
Trigger: CATTCCTGACCCAAGACTTCATCCATGCCTTTCAAC...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCAGCTTGGCTTCTGGTTaGAAGGCATGGATGAAGTCT +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKASLASG*KAWMKS
Trigger: AGACTTCATCCATGCCTTTCAACCAGAAGCCAAGCT...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATTGTGCATGGTATACTTaGCATTGGATGCGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYCAWYT*HWMRGL
Trigger: AAGACCACGCATCCAATGTCAAGTATACCATGCACA...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTGTGCCAGCCTTGTGTTaGAAGGCCCATAGAATTCAC +
Preference number: 4 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGVPALC*KAHRIH
Trigger: GTGAATTCTATGGGCCTTTCAACACAAGGCTGGCAC...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp TGGCAACGCTCCAATGAAAAGCTTTGTGACATCCCCACCTTGTCCTGTGTGCCATTGATGGATCTGGTGTaGAGCCAAGTCAAAGAGGTC +
Preference number: 4 (lower is better)
Translates to: WQRSNEKLCDIPTLSCVPLMDLV*SQVKEV
Trigger: GACCTCTTTGACTTGGCTGCACACCAGATCCATCAA...TGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCATTGGAGCGTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTGTCATCCAAGACCTGTaGCAGCCTTGTGTTGAAAGG +
Preference number: 4 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGVIQDL*QPCVER
Trigger: CCTTTCAACACAAGGCTGGCACAGGTCTTGGATGAC...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTGCTCTTTCACATCACTaGGGTTCTCACCATCCATCA +
Preference number: 4 (lower is better)
Translates to: RASILQAALFSVHMGLSIALSHH*GSHHPS
Trigger: TGATGGATGGTGAGAACCCCAGTGATGTGAAAGAGC...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp GACTTGGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCAGGTAGGGGTCAGTaGTGTTCCTGCCCGAGAACT +
Preference number: 4 (lower is better)
Translates to: DLGIRTKTKEPPFSKQLCSGRGQ*CSCPRT
Trigger: AGTTCTCGGGCAGGAACACCACTGACCCCTACCTGA...ACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTGAAGTAGAGATAGTCTaGGTACAACCTCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGEVEIV*VQPLHR
Trigger: CCTGTGGAGAGGTTGTACTCAGACTATCTCTACTTC...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR TCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCTGTGCATGGTATACTTaGCATTGGATGCGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKACAWYT*HWMRGL
Trigger: AAGACCACGCATCCAATGTCAAGTATACCATGCACA...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCGCAAGCAAGTTCATCTaGTTACTGTCCACACGAAAC +
Preference number: 4 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAASKFI*LLSTRN
Trigger: GTTTCGTGTGGACAGTAAGCAGATGAACTTGCTTGC...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAATGTAAGTCCGGGAGCTaGCTGGTTGTGAACTCAATC +
Preference number: 4 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQCKSGS*LVVNSI
Trigger: GATTGAGTTCACAACCAGGCAGCTCCCGGACTTACA...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTCTTCGGGGAACAGCTaGACGCAGCAATTAATGCAA +
Preference number: 4 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGSSGNS*TQQLMQ
Trigger: TTGCATTAATTGCTGCGTCCAGCTGTTCCCCGAAGA...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CTCACACAGTCGAGCAACTGCACAGCCTCCTGCTGCCAAAGCCCAGCTTTTCTCCATCTGCAGATTTATTaGAACTTGCGAAGTAGAGAT +
Preference number: 4 (lower is better)
Translates to: LTQSSNCTASCCQSPAFLHLQIY*NLRSRD
Trigger: ATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATG...GAGAAAAGCTGGGCTTTGGCAGCAGGAGGCTGTGCAGTTGCTCGACTGTGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATTCCGTCACTTTCTCGTaGAAGTCATCTGCAGATTTA +
Preference number: 4 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYSVTFS*KSSADL
Trigger: TAAATCTGCAGATGACTTCCACGAGAAAGTGACGGA...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTCAATTTTCAAACAGCTaGAGAGCCTCCGTCACTTTC +
Preference number: 4 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCQFSNS*RASVTF
Trigger: GAAAGTGACGGAGGCTCTGCAGCTGTTTGAAAATTG...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAATACTTGACATTGGATaGGTGGTCTTCCAGACGGAG +
Preference number: 4 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQILDIG*VVFQTE
Trigger: CTCCGTCTGGAAGACCACGCATCCAATGTCAAGTAT...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAACCTTGGCAGGCAACTTaGTGTTTGTGTGTGTCTTCG +
Preference number: 4 (lower is better)
Translates to: PFPLFDALRCSVLALTAKPWQAT*CLCVSS
Trigger: CGAAGACACACACAAACAGCAAGTTGCCTGCCAAGG...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp GACTTGGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTTGATGGATCTGGTGTaGAGCCAAGTCAAAGAGGTC +
Preference number: 4 (lower is better)
Translates to: DLGIRTKTKEPPFSKQLCLMDLV*SQVKEV
Trigger: GACCTCTTTGACTTGGCTGCACACCAGATCCATCAA...ACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTCTCGTGGAAGTCATCTaGAGATTTATTGGAACTTGC +
Preference number: 4 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGLVEVI*RFIGTC
Trigger: GCAAGTTCCAATAAATCTGCAGATGACTTCCACGAG...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp GACTTGGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTCAATTTTCAAACAGCTaGAGAGCCTCCGTCACTTTC +
Preference number: 4 (lower is better)
Translates to: DLGIRTKTKEPPFSKQLCQFSNS*RASVTF
Trigger: GAAAGTGACGGAGGCTCTGCAGCTGTTTGAAAATTG...ACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAAATACTTGACATTGGATaGGTGGTCTTCCAGACGGAG +
Preference number: 4 (lower is better)
Translates to: PFPLFDALRCSVLALTAKILDIG*VVFQTE
Trigger: CTCCGTCTGGAAGACCACGCATCCAATGTCAAGTAT...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTAACTGGAAGACCTTGTaGATGGTATACTTGACATTG +
Preference number: 4 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCNWKTL*MVYLTL
Trigger: CAATGTCAAGTATACCATGCACAAGGTCTTCCAGTT...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp AAAACATCCAAGGGAGCAGAAAAGAGAGGCAGGGCCAGTCAAATGCGAGAAGCATCGGGAGGAATTTGCTaGGGATTACAGAAAACATAT +
Preference number: 4 (lower is better)
Translates to: KTSKGAEKRGRASQMREASGGIC*GLQKTY
Trigger: ATATGTTTTCTGTAATCCCCAGCAAATTCCTCCCGA...TGCTTCTCGCATTTGACTGGCCCTGCCTCTCTTTTCTGCTCCCTTGGATGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTCATCTGCAGATTTATTaGAACTTGCGAAGTAGAGAT +
Preference number: 4 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCHLQIY*NLRSRD
Trigger: ATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATG...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAACTCGTGGAAGTCATCTaGAGATTTATTGGAACTTGC +
Preference number: 4 (lower is better)
Translates to: PFPLFDALRCSVLALTAKLVEVI*RFIGTC
Trigger: GCAAGTTCCAATAAATCTGCAGATGACTTCCACGAG...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR GCA 90 bp GACTTGGGAATACGAACAAAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTAACTGGAAGACCTTGTaGATGGTATACTTGACATTG +
Preference number: 4 (lower is better)
Translates to: DLGIRTKTKEPPFSKQLCNWKTL*MVYLTL
Trigger: CAATGTCAAGTATACCATGCACAAGGTCTTCCAGTT...ACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTTTGTTCGTATTCCCAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp TACAGAATAAATGTGACTCGCATATCATACCTTACACGACAAGGGAGGGAAGGTTCCGTCACTTTCTCGTaGAAGTCATCTGCAGATTTA +
Preference number: 4 (lower is better)
Translates to: YRINVTRISYLTRQGREGSVTFS*KSSADL
Trigger: TAAATCTGCAGATGACTTCCACGAGAAAGTGACGGA...ACCTTCCCTCCCTTGTCGTGTAAGGTATGATATGCGAGTCACATTTATTCTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CCA 90 bp TACAGAATAAATGTGACTCGCATATCATACCTTACACGACAAGGGAGGGAAGGTTCGGGAGGAATTTGCTaGGGATTACAGAAAACATAT +
Preference number: 4 (lower is better)
Translates to: YRINVTRISYLTRQGREGSGGIC*GLQKTY
Trigger: ATATGTTTTCTGTAATCCCCAGCAAATTCCTCCCGA...ACCTTCCCTCCCTTGTCGTGTAAGGTATGATATGCGAGTCACATTTATTCTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp GGCAGGCAGCGCAGGCGGAAGTGCTTGCCCTGCACGTGGGACAGGTaGCCCCAGAAAACCTTGCGCAGAGCGTCAAAGGTAGAGCGGAAC +
Preference number: 5 (lower is better)
Translates to: GRQRRRKCLPCTWDR*PQKTLRRASKVERN
Trigger: GTTCCGCTCTACCTTTGACGCTCTGCGCAAGGTTTTCTGGGGCCACCTGTCCCACGTGCAGGGCAAGCACTTCCGCCTGCGCTGCCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 90 bp GGAGGCGGTCGTACAGGTCAGTGGTTCCACACTTGGGCTGCCCAATaGTGTAGAAGTGGGGCAGGCAGCGCAGGCGGAAGTGCTTGCCCT +
Preference number: 5 (lower is better)
Translates to: GGGRTGQWFHTWAAQ*CRSGAGSAGGSACP
Trigger: AGGGCAAGCACTTCCGCCTGCGCTGCCTGCCCCACTTCTACATCATTGGGCAGCCCAAGTGTGGAACCACTGACCTGTACGACCGCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp CCGTCCCGCAGGCGGACAATTCCAAAGCGCTTCCGGGTCCACCAGTaGGGCTCCTTGATGGCTGAGAATTTCACTTCTGGATGCAGCCGG +
Preference number: 5 (lower is better)
Translates to: PSRRRTIPKRFRVHQ*GSLMAENFTSGCSR
Trigger: CCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAATTGTCCGCCTGCGGGACGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 90 bp GGCGGACAATTCCAAAGCGCTTCCGGGTCCACCAGTGCGGCTCCTTaGTGGCTGAGAATTTCACTTCTGGATGCAGCCGGAGGCGGTCGT +
Preference number: 5 (lower is better)
Translates to: GGQFQSASGSTSAAP*WLRISLLDAAGGGR
Trigger: ACGACCGCCTCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAATTGTCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp GTCCACCAGTGCGGCTCCTTGATGGCTGAGAATTTCACTTCTGGATaGAGCCGGAGGCGGTCGTACAGGTCAGTGGTTCCACACTTGGGC +
Preference number: 5 (lower is better)
Translates to: VHQCGSLMAENFTSG*SRRRSYRSVVPHLG
Trigger: GCCCAAGTGTGGAACCACTGACCTGTACGACCGCCTCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTCGCAGGCGGAAGTGCTaGCCCTGCACGTGGGACAGG +
Preference number: 5 (lower is better)
Translates to: RASILQAALFSVHMGLSIRRRKC*PCTWDR
Trigger: CCTGTCCCACGTGCAGGGCAAGCACTTCCGCCTGCG...AATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 90 bp AATTCCAAAGCGCTTCCGGGTCCACCAGTGCGGCTCCTTGATGGCTaGGAATTTCACTTCTGGATGCAGCCGGAGGCGGTCGTACAGGTC +
Preference number: 5 (lower is better)
Translates to: NSKALPGPPVRLLDG*EFHFWMQPEAVVQV
Trigger: GACCTGTACGACCGCCTCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp CCACATGGGTCCCAGACTACGATCCTCAGGACGCCGTGTGTTGGATaGAGGGCTCTTGGTCATCAGAGCTTCCTGCTTCTCACTCAGAGG +
Preference number: 5 (lower is better)
Translates to: PHGSQTTILRTPCVG*RALGHQSFLLLTQR
Trigger: CCTCTGAGTGAGAAGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCAACACACGGCGTCCTGAGGATCGTAGTCTGGGACCCATGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp TACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGGCAGCCTGCAGTCCTaGATGGATCTGGTGTGCAGC +
Preference number: 5 (lower is better)
Translates to: YLTRQGREGVIHPGTRLWGSLQS*MDLVCS
Trigger: GCTGCACACCAGATCCATCAAGGACTGCAGGCTGCC...CCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp GGGAAGGTGTCATACACCCTGGCACACGGCTTTGGGAATACGAAGTGTCTTCGGTCAGGACGCCGTGTGTaGGATGCAGGGCTCTTGGTC +
Preference number: 5 (lower is better)
Translates to: GKVSYTLAHGFGNTKCLRSGRRV*DAGLLV
Trigger: GACCAAGAGCCCTGCATCCAACACACGGCGTCCTGA...CCGAAGACACTTCGTATTCCCAAAGCCGTGTGCCAGGGTGTATGACACCTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp CCAGACTACGATCCTCAGGACGCCGTGTGTTGGATGCAGGGCTCTTaGTCATCAGAGCTTCCTGCTTCTCACTCAGAGGCCCCAGGTTTA +
Preference number: 5 (lower is better)
Translates to: PDYDPQDAVCWMQGS*SSELPASHSEAPGL
Trigger: TAAACCTGGGGCCTCTGAGTGAGAAGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCAACACACGGCGTCCTGAGGATCGTAGTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp ACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATGGCCTCCCCACCCCAGTTTTCATaGCCCTCAGTCCTCACTTCG +
Preference number: 5 (lower is better)
Translates to: TPRQTLLEEGRQGWSMASPPQFS*PSVLTS
Trigger: CGAAGTGAGGACTGAGGGCAATGAAAACTGGGGTGG...GGAGGCCATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAACGCAGGCGGAAGTGCTaGCCCTGCACGTGGGACAGG +
Preference number: 5 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQRRRKC*PCTWDR
Trigger: CCTGTCCCACGTGCAGGGCAAGCACTTCCGCCTGCG...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp ACCGCTTGGAGTAGAGCACGTAGGAATTGGTCAGGTAGGGGTCAGTaGTGTTCCTGCCCGAGAACTCCTCATACCAACAAGGGCTCTTGC +
Preference number: 5 (lower is better)
Translates to: TAWSRARRNWSGRGQ*CSCPRTPHTNKGSC
Trigger: GCAAGAGCCCTTGTTGGTATGAGGAGTTCTCGGGCAGGAACACCACTGACCCCTACCTGACCAATTCCTACGTGCTCTACTCCAAGCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGGGCAGCCTGCAGTCCTaGATGGATCTGGTGTGCAGC +
Preference number: 5 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTGSLQS*MDLVCS
Trigger: GCTGCACACCAGATCCATCAAGGACTGCAGGCTGCC...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp GCTGGCCTCTCCAATAATGATCTTATTCATCTTGCTGGGCTGCTCTaGAGAGGCAGCCTGCAGTCCTTGATGGATCTGGTGTGCAGCCAA +
Preference number: 5 (lower is better)
Translates to: AGLSNNDLIHLAGLL*RGSLQSLMDLVCSQ
Trigger: TTGGCTGCACACCAGATCCATCAAGGACTGCAGGCTGCCTCTGCAGAGCAGCCCAGCAAGATGAATAAGATCATTATTGGAGAGGCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AAAACATCCAAGGGAGCAGAAAAGAGAGGCAGGGCCAGTCAAATGCGAGAAGCAGTGATGGGGGCCTCCTaGGCAGGCAACTTGCTGTTT +
Preference number: 5 (lower is better)
Translates to: KTSKGAEKRGRASQMREAVMGAS*AGNLLF
Trigger: AAACAGCAAGTTGCCTGCCAAGGAGGCCCCCATCAC...TGCTTCTCGCATTTGACTGGCCCTGCCTCTCTTTTCTGCTCCCTTGGATGTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCTGGCCCCAGAAAACCTaGCGCAGAGCGTCAAAGGTA +
Preference number: 5 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAWPQKT*RRASKV
Trigger: TACCTTTGACGCTCTGCGCAAGGTTTTCTGGGGCCA...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAATCAGGACGCCGTGTGTaGGATGCAGGGCTCTTGGTC +
Preference number: 5 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQSGRRV*DAGLLV
Trigger: GACCAAGAGCCCTGCATCCAACACACGGCGTCCTGA...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp GGCTTCTGGTTGAAAGGCATGGATGAAGTCTTGGGTCAGGAATGGTaGCTCGCCGTCTGTGCTGTTGTCATAGAAGAAGGTCCAGGCATT +
Preference number: 5 (lower is better)
Translates to: GFWLKGMDEVLGQEW*LAVCAVVIEEGPGI
Trigger: AATGCCTGGACCTTCTTCTATGACAACAGCACAGACGGCGAGCCACCATTCCTGACCCAAGACTTCATCCATGCCTTTCAACCAGAAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CTCCGCCTGGAGACTTTTAAAGTCATGGCAATGACAGAGTCAGTGGGCCCAGCTTCCTTGGCAGGCAACTaGCTGTTTGTGTGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: LRLETFKVMAMTESVGPASLAGN*LFVCVF
Trigger: GAAGACACACACAAACAGCAAGTTGCCTGCCAAGGA...AGCTGGGCCCACTGACTCTGTCATTGCCATGACTTTAAAAGTCTCCAGGCGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACTCCTTGGCAGGCAACTaGCTGTTTGTGTGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHSLAGN*LFVCVF
Trigger: GAAGACACACACAAACAGCAAGTTGCCTGCCAAGGA...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp TCAGGGTGTTGTTGTAGACGCAGGCGCGCAGTGAATAATCCAGCATaGAATTTTCAAACAGCTGCAGAGCCTCCGTCACTTTCTCGTGGA +
Preference number: 5 (lower is better)
Translates to: SGCCCRRRRAVNNPA*NFQTAAEPPSLSRG
Trigger: TCCACGAGAAAGTGACGGAGGCTCTGCAGCTGTTTGAAAATTGCATGCTGGATTATTCACTGCGCGCCTGCGTCTACAACAACACCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp AGATGTTATTTACAGAAGGCTGGTAGTGATGCTCTTTCACATCACTaGGGTTCTCACCATCCATCACGCTGGGGTTGCTGGGAAAGCCCC +
Preference number: 5 (lower is better)
Translates to: RCYLQKAGSDALSHH*GSHHPSRWGCWESP
Trigger: GGGGCTTTCCCAGCAACCCCAGCGTGATGGATGGTGAGAACCCCAGTGATGTGAAAGAGCATCACTACCAGCCTTCTGTAAATAACATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CATATCATACCTTACACGACAAGGGAGGGAAGGTGTCATACACCCTGGCACACGTACCAACAAGGGCTCTaGCTAGTCGGGAGGAATTTG +
Preference number: 5 (lower is better)
Translates to: HIIPYTTREGRCHTPWHTYQQGL*LVGRNL
Trigger: CAAATTCCTCCCGACTAGCAAGAGCCCTTGTTGGTA...CGTGTGCCAGGGTGTATGACACCTTCCCTCCCTTGTCGTGTAAGGTATGATATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCTACCAACAAGGGCTCTaGCTAGTCGGGAGGAATTTG +
Preference number: 5 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKAYQQGL*LVGRNL
Trigger: CAAATTCCTCCCGACTAGCAAGAGCCCTTGTTGGTA...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp TGGCAACGCTCCAATGAAAAGCTTTGTGACATCCCCACCTTGTCCTGTGTGCCAGAGCTTGGCTTCTGGTaGAAAGGCATGGATGAAGTC +
Preference number: 5 (lower is better)
Translates to: WQRSNEKLCDIPTLSCVPELGFW*KGMDEV
Trigger: GACTTCATCCATGCCTTTCAACCAGAAGCCAAGCTC...TGGCACACAGGACAAGGTGGGGATGTCACAAAGCTTTTCATTGGAGCGTTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp TACTTGACATTGGATGCGTGGTCTTCCAGACGGAGAATGAGGAACTaGTCCTTACTGAAGACAGTCAGCCAATCCAGGAGGTACACAGCA +
Preference number: 5 (lower is better)
Translates to: YLTLDAWSSRRRMRN*SLLKTVSQSRRYTA
Trigger: TGCTGTGTACCTCCTGGATTGGCTGACTGTCTTCAGTAAGGAGCAGTTCCTCATTCTCCGTCTGGAAGACCACGCATCCAATGTCAAGTA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp TGCTTCTCACTCAGAGGCCCCAGGTTTAGAAACTGGAAGACCTTGTaGATGGTATACTTGACATTGGATGCGTGGTCTTCCAGACGGAGA +
Preference number: 5 (lower is better)
Translates to: CFSLRGPRFRNWKTL*MVYLTLDAWSSRRR
Trigger: TCTCCGTCTGGAAGACCACGCATCCAATGTCAAGTATACCATGCACAAGGTCTTCCAGTTTCTAAACCTGGGGCCTCTGAGTGAGAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CCTTTTCCACTGTTCGATGCCTTGAGGTGTTCTGTTCTGGCATTAACAGCAAAAGTGATGGGGGCCTCCTaGGCAGGCAACTTGCTGTTT +
Preference number: 5 (lower is better)
Translates to: PFPLFDALRCSVLALTAKVMGAS*AGNLLF
Trigger: AAACAGCAAGTTGCCTGCCAAGGAGGCCCCCATCAC...TTTTGCTGTTAATGCCAGAACAGAACACCTCAAGGCATCGAACAGTGGAAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATAAGAAGGTCCAGGCATaGTTATCCCACATTGTAGAG +
Preference number: 5 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYKKVQA*LSHIVE
Trigger: CTCTACAATGTGGGATAACAATGCCTGGACCTTCTT...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTGAGCTTGGCTTCTGGTaGAAAGGCATGGATGAAGTC +
Preference number: 5 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGELGFW*KGMDEV
Trigger: GACTTCATCCATGCCTTTCAACCAGAAGCCAAGCTC...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp GTACCAGGTCTGTGTTTCGCTTTGGTTTGGGGTGACAGGCTCAAGAGCCATCACTTGTGCATGGTATACTaGACATTGGATGCGTGGTCT +
Preference number: 5 (lower is better)
Translates to: VPGLCFALVWGDRLKSHHLCMVY*TLDAWS
Trigger: AGACCACGCATCCAATGTCAAGTATACCATGCACAA...GTGATGGCTCTTGAGCCTGTCACCCCAAACCAAAGCGAAACACAGACCTGGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTATGATCTTATTCATCTaGCTGGGCTGCTCTGCAGAG +
Preference number: 5 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCMILFI*LGCSAE
Trigger: CTCTGCAGAGCAGCCCAGCAAGATGAATAAGATCAT...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTATGATCTTATTCATCTaGCTGGGCTGCTCTGCAGAG +
Preference number: 5 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGMILFI*LGCSAE
Trigger: CTCTGCAGAGCAGCCCAGCAAGATGAATAAGATCAT...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CAACCCTACACCCAGACAAACTCTCCTGGAGGAAGGAAGGCAAGGCTGGTCTATAGAAACTGGAAGACCTaGTGCATGGTATACTTGACA +
Preference number: 5 (lower is better)
Translates to: QPYTQTNSPGGRKARLVYRNWKT*CMVYLT
Trigger: TGTCAAGTATACCATGCACAAGGTCTTCCAGTTTCT...ATAGACCAGCCTTGCCTTCCTTCCTCCAGGAGAGTTTGTCTGGGTGTAGGGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp GCAGAGCCTCCGTCACTTTCTCGTGGAAGTCATCTGCAGATTTATTaGAACTTGCGAAGTAGAGATAGTCTGAGTACAACCTCTCCACAG +
Preference number: 5 (lower is better)
Translates to: AEPPSLSRGSHLQIY*NLRSRDSLSTTSPQ
Trigger: CTGTGGAGAGGTTGTACTCAGACTATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAGTGACGGAGGCTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp TACAGAATAAATGTGACTCGCATATCATACCTTACACGACAAGGGAGGGAAGGTTGGCCCCAGAAAACCTaGCGCAGAGCGTCAAAGGTA +
Preference number: 5 (lower is better)
Translates to: YRINVTRISYLTRQGREGWPQKT*RRASKV
Trigger: TACCTTTGACGCTCTGCGCAAGGTTTTCTGGGGCCA...ACCTTCCCTCCCTTGTCGTGTAAGGTATGATATGCGAGTCACATTTATTCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AAATGGGGAGGGCTTCACTTCCTTCCTTTTCCACTGTTCGATGCCTTGAGGTGTTTGTGCATGGTATACTaGACATTGGATGCGTGGTCT +
Preference number: 5 (lower is better)
Translates to: KWGGLHFLPFPLFDALRCLCMVY*TLDAWS
Trigger: AGACCACGCATCCAATGTCAAGTATACCATGCACAA...ACACCTCAAGGCATCGAACAGTGGAAAAGGAAGGAAGTGAAGCCCTCCCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp TCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAGGCCAGAAACTGGAAGACCTaGTGCATGGTATACTTGACA +
Preference number: 5 (lower is better)
Translates to: SPSSSVLCPHGVVDLCKARNWKT*CMVYLT
Trigger: TGTCAAGTATACCATGCACAAGGTCTTCCAGTTTCT...GGCCTTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp AACATATGCAACTCTTGTCTCTTGAGATCTTGTAAGTCCGGGAGCTaGCTGGTTGTGAACTCAATCCTGGCAGCAATGCTGTCGATAATC +
Preference number: 5 (lower is better)
Translates to: NICNSCLLRSCKSGS*LVVNSILAAMLSII
Trigger: GATTATCGACAGCATTGCTGCCAGGATTGAGTTCACAACCAGGCAGCTCCCGGACTTACAAGATCTCAAGAGACAAGAGTTGCATATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 90 bp AGAAACTGGAAGACCTTGTGCATGGTATACTTGACATTGGATGCGTaGTCTTCCAGACGGAGAATGAGGAACTGCTCCTTACTGAAGACA +
Preference number: 5 (lower is better)
Translates to: RNWKTLCMVYLTLDA*SSRRRMRNCSLLKT
Trigger: TGTCTTCAGTAAGGAGCAGTTCCTCATTCTCCGTCTGGAAGACCACGCATCCAATGTCAAGTATACCATGCACAAGGTCTTCCAGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp CCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTTGTCGATTTATGCAAAAGAAGGTCCAGGCATaGTTATCCCACATTGTAGAG +
Preference number: 5 (lower is better)
Translates to: PFSKQLCSLSTWGCRFMQKKVQA*LSHIVE
Trigger: CTCTACAATGTGGGATAACAATGCCTGGACCTTCTT...TTGCATAAATCGACAACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp GGACGAGCCTTGCAATCAAGAGCAGAGCTGCTGAACATGGCAAGGAAAGCTTTACAGATTTATTGGAACTaGCGAAGTAGAGATAGTCTG +
Preference number: 5 (lower is better)
Translates to: GRALQSRAELLNMARKALQIYWN*RSRDSL
Trigger: CAGACTATCTCTACTTCGCAAGTTCCAATAAATCTG...TAAAGCTTTCCTTGCCATGTTCAGCAGCTCTGCTCTTGATTGCAAGGCTCGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS-3UTR CAA 90 bp AAAACGAAAGAGCCTCCATTCTCCAAGCAGCTCTGTTCTCTGTCCACATGGGGTCAGATTTATTGGAACTaGCGAAGTAGAGATAGTCTG +
Preference number: 5 (lower is better)
Translates to: KTKEPPFSKQLCSLSTWGQIYWN*RSRDSL
Trigger: CAGACTATCTCTACTTCGCAAGTTCCAATAAATCTG...ACCCCATGTGGACAGAGAACAGAGCTGCTTGGAGAATGGAGGCTCTTTCGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 90 bp TCATTGCCCTCAGTCCTCACTTCGAGAACAGCAAGCAAGTTCATCTaGTTACTGTCCACACGAAACAGAATTTTGTTTTCTCCTTTGCAA +
Preference number: 5 (lower is better)
Translates to: SLPSVLTSRTASKFI*LLSTRNRILFSPLQ
Trigger: TTGCAAAGGAGAAAACAAAATTCTGTTTCGTGTGGACAGTAAGCAGATGAACTTGCTTGCTGTTCTCGAAGTGAGGACTGAGGGCAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 72 bp GCGCTTCCGGGTCCACCAGTGCGGCTCCTTGATGGCTaGGAATTTCACTTCTGGATGCAGCCGGAGGCGGTC +
Preference number: 6 (lower is better)
Translates to: ALPGPPVRLLDG*EFHFWMQPEAV
Trigger: GACCGCCTCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 90 bp AGGCGGACAATTCCAAAGCGCTTCCGGGTCCACCAGTGCGGCTCCTaGATGGCTGAGAATTTCACTTCTGGATGCAGCCGGAGGCGGTCG +
Preference number: 6 (lower is better)
Translates to: RRTIPKRFRVHQCGS*MAENFTSGCSRRRS
Trigger: CGACCGCCTCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAATTGTCCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 72 bp CGTACAGGTCAGTGGTTCCACACTTGGGCTGCCCAATaGTGTAGAAGTGGGGCAGGCAGCGCAGGCGGAAGT +
Preference number: 6 (lower is better)
Translates to: RTGQWFHTWAAQ*CRSGAGSAGGS
Trigger: ACTTCCGCCTGCGCTGCCTGCCCCACTTCTACATCATTGGGCAGCCCAAGTGTGGAACCACTGACCTGTACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 72 bp AGTGGGGCACGCCTGATGACTGTGATGGGGGCCTCCTaGGCAGGCAACTTGCTGTTTGTGTGTGTCTTCGGG +
Preference number: 6 (lower is better)
Translates to: SGARLMTVMGAS*AGNLLFVCVFG
Trigger: CCCGAAGACACACACAAACAGCAAGTTGCCTGCCAAGGAGGCCCCCATCACAGTCATCAGGCGTGCCCCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 90 bp CCCAGACTACGATCCTCAGGACGCCGTGTGTTGGATGCAGGGCTCTaGGTCATCAGAGCTTCCTGCTTCTCACTCAGAGGCCCCAGGTTT +
Preference number: 6 (lower is better)
Translates to: PRLRSSGRRVLDAGL*VIRASCFSLRGPRF
Trigger: AAACCTGGGGCCTCTGAGTGAGAAGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCAACACACGGCGTCCTGAGGATCGTAGTCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 72 bp CGATCCTCAGGACGCCGTGTGTTGGATGCAGGGCTCTaGGTCATCAGAGCTTCCTGCTTCTCACTCAGAGGC +
Preference number: 6 (lower is better)
Translates to: RSSGRRVLDAGL*VIRASCFSLRG
Trigger: GCCTCTGAGTGAGAAGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCAACACACGGCGTCCTGAGGATCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 72 bp TTCCAAAGCGCTTCCGGGTCCACCAGTGCGGCTCCTTaGTGGCTGAGAATTTCACTTCTGGATGCAGCCGGA +
Preference number: 6 (lower is better)
Translates to: FQSASGSTSAAP*WLRISLLDAAG
Trigger: TCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp TGCGGCTCCTTGATGGCTGAGAATTTCACTTCTGGATaGAGCCGGAGGCGGTCGTACAGGTCAGTGGTTCCA +
Preference number: 6 (lower is better)
Translates to: CGSLMAENFTSG*SRRRSYRSVVP
Trigger: TGGAACCACTGACCTGTACGACCGCCTCCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 72 bp ATTCCAAAGCGCTTCCGGGTCCACCAGTGCGGCTCCTaGATGGCTGAGAATTTCACTTCTGGATGCAGCCGG +
Preference number: 6 (lower is better)
Translates to: IPKRFRVHQCGS*MAENFTSGCSR
Trigger: CCGGCTGCATCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp CGTAGGAATTGGTCAGGTAGGGGTCAGTGGTGTTCCTaGCCGAGAACTCCTCATACCAACAAGGGCTCTTGC +
Preference number: 6 (lower is better)
Translates to: RRNWSGRGQWCS*PRTPHTNKGSC
Trigger: GCAAGAGCCCTTGTTGGTATGAGGAGTTCTCGGGCAGGAACACCACTGACCCCTACCTGACCAATTCCTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp AGGCGGACAATTCCAAAGCGCTTCCGGGTCCACCAGTaGGGCTCCTTGATGGCTGAGAATTTCACTTCTGGA +
Preference number: 6 (lower is better)
Translates to: RRTIPKRFRVHQ*GSLMAENFTSG
Trigger: TCCAGAAGTGAAATTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAATTGTCCGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp CTTTCACATCACTGGGGTTCTCACCATCCATCACGCTaGGGTTGCTGGGAAAGCCCCCATAATGGAAAGGGG +
Preference number: 6 (lower is better)
Translates to: LSHHWGSHHPSR*GCWESPHNGKG
Trigger: CCCCTTTCCATTATGGGGGCTTTCCCAGCAACCCCAGCGTGATGGATGGTGAGAACCCCAGTGATGTGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp GTGTTGGATGCAGGGCTCTTGGTCATCAGAGCTTCCTaGTTCTCACTCAGAGGCCCCAGGTTTAGAAACTGG +
Preference number: 6 (lower is better)
Translates to: VLDAGLLVIRAS*FSLRGPRFRNW
Trigger: CCAGTTTCTAAACCTGGGGCCTCTGAGTGAGAAGCAGGAAGCTCTGATGACCAAGAGCCCTGCATCCAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp TTACAGAAGGCTGGTAGTGATGCTCTTTCACATCACTaGGGTTCTCACCATCCATCACGCTGGGGTTGCTGG +
Preference number: 6 (lower is better)
Translates to: LQKAGSDALSHH*GSHHPSRWGCW
Trigger: CCAGCAACCCCAGCGTGATGGATGGTGAGAACCCCAGTGATGTGAAAGAGCATCACTACCAGCCTTCTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp AGTAGAGCACGTAGGAATTGGTCAGGTAGGGGTCAGTaGTGTTCCTGCCCGAGAACTCCTCATACCAACAAG +
Preference number: 6 (lower is better)
Translates to: SRARRNWSGRGQ*CSCPRTPHTNK
Trigger: CTTGTTGGTATGAGGAGTTCTCGGGCAGGAACACCACTGACCCCTACCTGACCAATTCCTACGTGCTCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 72 bp TTCCTGCCCGAGAACTCCTCATACCAACAAGGGCTCTaGCTAGTCGGGAGGAATTTGCTGGGGATTACAGAA +
Preference number: 6 (lower is better)
Translates to: FLPENSSYQQGL*LVGRNLLGITE
Trigger: TTCTGTAATCCCCAGCAAATTCCTCCCGACTAGCAAGAGCCCTTGTTGGTATGAGGAGTTCTCGGGCAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 90 bp TCAGTGGTGTTCCTGCCCGAGAACTCCTCATACCAACAAGGGCTCTaGCTAGTCGGGAGGAATTTGCTGGGGATTACAGAAAACATATGC +
Preference number: 6 (lower is better)
Translates to: SVVFLPENSSYQQGL*LVGRNLLGITENIC
Trigger: GCATATGTTTTCTGTAATCCCCAGCAAATTCCTCCCGACTAGCAAGAGCCCTTGTTGGTATGAGGAGTTCTCGGGCAGGAACACCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS TCA 72 bp ATGCTTCGTCATCCAAGACCTGTGCCAGCCTTGTGTTaGAAGGCCCATAGAATTCACGCAGAATCTTCTGGG +
Preference number: 6 (lower is better)
Translates to: MLRHPRPVPALC*KAHRIHAESSG
Trigger: CCCAGAAGATTCTGCGTGAATTCTATGGGCCTTTCAACACAAGGCTGGCACAGGTCTTGGATGACGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp AACTCTTGTCTCTTGAGATCTTGTAAGTCCGGGAGCTaGCTGGTTGTGAACTCAATCCTGGCAGCAATGCTG +
Preference number: 6 (lower is better)
Translates to: NSCLLRSCKSGS*LVVNSILAAML
Trigger: CAGCATTGCTGCCAGGATTGAGTTCACAACCAGGCAGCTCCCGGACTTACAAGATCTCAAGAGACAAGAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp TCCAATAATGATCTTATTCATCTTGCTGGGCTGCTCTaGAGAGGCAGCCTGCAGTCCTTGATGGATCTGGTG +
Preference number: 6 (lower is better)
Translates to: SNNDLIHLAGLL*RGSLQSLMDLV
Trigger: CACCAGATCCATCAAGGACTGCAGGCTGCCTCTGCAGAGCAGCCCAGCAAGATGAATAAGATCATTATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp TGTTGTAGACGCAGGCGCGCAGTGAATAATCCAGCATaGAATTTTCAAACAGCTGCAGAGCCTCCGTCACTT +
Preference number: 6 (lower is better)
Translates to: CCRRRRAVNNPA*NFQTAAEPPSL
Trigger: AAGTGACGGAGGCTCTGCAGCTGTTTGAAAATTGCATGCTGGATTATTCACTGCGCGCCTGCGTCTACAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp CTCAGAGGCCCCAGGTTTAGAAACTGGAAGACCTTGTaGATGGTATACTTGACATTGGATGCGTGGTCTTCC +
Preference number: 6 (lower is better)
Translates to: LRGPRFRNWKTL*MVYLTLDAWSS
Trigger: GGAAGACCACGCATCCAATGTCAAGTATACCATGCACAAGGTCTTCCAGTTTCTAAACCTGGGGCCTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp TTGAAAGGCATGGATGAAGTCTTGGGTCAGGAATGGTaGCTCGCCGTCTGTGCTGTTGTCATAGAAGAAGGT +
Preference number: 6 (lower is better)
Translates to: LKGMDEVLGQEW*LAVCAVVIEEG
Trigger: ACCTTCTTCTATGACAACAGCACAGACGGCGAGCCACCATTCCTGACCCAAGACTTCATCCATGCCTTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp TGGTTGAAAGGCATGGATGAAGTCTTGGGTCAGGAATaGTGGCTCGCCGTCTGTGCTGTTGTCATAGAAGAA +
Preference number: 6 (lower is better)
Translates to: WLKGMDEVLGQE*WLAVCAVVIEE
Trigger: TTCTTCTATGACAACAGCACAGACGGCGAGCCACCATTCCTGACCCAAGACTTCATCCATGCCTTTCAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 90 bp CCTCCGTCACTTTCTCGTGGAAGTCATCTGCAGATTTATTGGAACTaGCGAAGTAGAGATAGTCTGAGTACAACCTCTCCACAGGATCCC +
Preference number: 6 (lower is better)
Translates to: PPSLSRGSHLQIYWN*RSRDSLSTTSPQDP
Trigger: GGGATCCTGTGGAGAGGTTGTACTCAGACTATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAGTGACGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp CTGCAGAGCCTCCGTCACTTTCTCGTGGAAGTCATCTaGAGATTTATTGGAACTTGCGAAGTAGAGATAGTC +
Preference number: 6 (lower is better)
Translates to: LQSLRHFLVEVI*RFIGTCEVEIV
Trigger: GACTATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAGTGACGGAGGCTCTGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp AAGACCTTGTGCATGGTATACTTGACATTGGATGCGTaGTCTTCCAGACGGAGAATGAGGAACTGCTCCTTA +
Preference number: 6 (lower is better)
Translates to: KTLCMVYLTLDA*SSRRRMRNCSL
Trigger: TAAGGAGCAGTTCCTCATTCTCCGTCTGGAAGACCACGCATCCAATGTCAAGTATACCATGCACAAGGTCTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 72 bp AGAAACTGGAAGACCTTGTGCATGGTATACTTGACATaGGATGCGTGGTCTTCCAGACGGAGAATGAGGAAC +
Preference number: 6 (lower is better)
Translates to: RNWKTLCMVYLT*DAWSSRRRMRN
Trigger: GTTCCTCATTCTCCGTCTGGAAGACCACGCATCCAATGTCAAGTATACCATGCACAAGGTCTTCCAGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 90 bp GAGAACTCCTCATACCAACAAGGGCTCTTGCTAGTCGGGAGGAATTaGCTGGGGATTACAGAAAACATATGCAACTCTTGTCTCTTGAGA +
Preference number: 6 (lower is better)
Translates to: ENSSYQQGLLLVGRN*LGITENICNSCLLR
Trigger: TCTCAAGAGACAAGAGTTGCATATGTTTTCTGTAATCCCCAGCAAATTCCTCCCGACTAGCAAGAGCCCTTGTTGGTATGAGGAGTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS GCA 72 bp GTCGGGAGGAATTTGCTGGGGATTACAGAAAACATATaGAACTCTTGTCTCTTGAGATCTTGTAAGTCCGGG +
Preference number: 6 (lower is better)
Translates to: VGRNLLGITENI*NSCLLRSCKSG
Trigger: CCCGGACTTACAAGATCTCAAGAGACAAGAGTTGCATATGTTTTCTGTAATCCCCAGCAAATTCCTCCCGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp TTTTCAAACAGCTGCAGAGCCTCCGTCACTTTCTCGTaGAAGTCATCTGCAGATTTATTGGAACTTGCGAAG +
Preference number: 6 (lower is better)
Translates to: FSNSCRASVTFS*KSSADLLELAK
Trigger: CTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAGTGACGGAGGCTCTGCAGCTGTTTGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 90 bp AGGAATTTGCTGGGGATTACAGAAAACATATGCAACTCTTGTCTCTaGAGATCTTGTAAGTCCGGGAGCTGCCTGGTTGTGAACTCAATC +
Preference number: 6 (lower is better)
Translates to: RNLLGITENICNSCL*RSCKSGSCLVVNSI
Trigger: GATTGAGTTCACAACCAGGCAGCTCCCGGACTTACAAGATCTCAAGAGACAAGAGTTGCATATGTTTTCTGTAATCCCCAGCAAATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CCA 72 bp CCGTCACTTTCTCGTGGAAGTCATCTGCAGATTTATTaGAACTTGCGAAGTAGAGATAGTCTGAGTACAACC +
Preference number: 6 (lower is better)
Translates to: PSLSRGSHLQIY*NLRSRDSLSTT
Trigger: GGTTGTACTCAGACTATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAGTGACGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6
CDS CAA 72 bp CTTTCTCGTGGAAGTCATCTGCAGATTTATTGGAACTaGCGAAGTAGAGATAGTCTGAGTACAACCTCTCCA +
Preference number: 6 (lower is better)
Translates to: LSRGSHLQIYWN*RSRDSLSTTSP
Trigger: TGGAGAGGTTGTACTCAGACTATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077472.10
ENSMUST00000080215.6