Pregenerated sensors for CHRNB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035200Ensembl transcript IDs: ENSMUST00000034854.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGGAGGAGAGTGGGGATTCTCTTTGGGTAGAGAGTCCAGGAGATaGCATAAGAAAACACCTGGAGCCCAGAGAGCCAGATCAGTACTA | + |
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Preference number: 1 (lower is better) Translates to: AGGEWGFSLGRESRR*HKKTPGAQRARSVL Trigger: TAGTACTGATCTGGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAAAGAGAATCCCCACTCTCCTCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CCA 90 bp | TGCAGCTGCCAATGGAGGACACTCAAGAAAGCTGGAGGTTTAATGTaGTTATGGGAGACGCTGCTTTGGAATGCATGGCTAGGGAAGGCT | + |
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Preference number: 1 (lower is better) Translates to: CSCQWRTLKKAGGLM*LWETLLWNAWLGKA Trigger: AGCCTTCCCTAGCCATGCATTCCAAAGCAGCGTCTCCCATAACCACATTAAACCTCCAGCTTTCTTGAGTGTCCTCCATTGGCAGCTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR GCA 90 bp | TTAATGGGCAAGGTGCTGGTGACTAGTGTGCCACCAACTAAGGACTaGAGCTGCCAATGGAGGACACTCAAGAAAGCTGGAGGTTTAATG | + |
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Preference number: 1 (lower is better) Translates to: LMGKVLVTSVPPTKD*SCQWRTLKKAGGLM Trigger: CATTAAACCTCCAGCTTTCTTGAGTGTCCTCCATTGGCAGCTGCAGTCCTTAGTTGGTGGCACACTAGTCACCAGCACCTTGCCCATTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CCA 90 bp | AGAGAAACAGATCAGTGTGAGAAAGAGACAGGCCTGAACCAACCATaGTGTAAAGGCAGAAAGCAGGAAGGGAGCAAGGACAGCTACTCA | + |
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Preference number: 1 (lower is better) Translates to: RETDQCEKETGLNQP*CKGRKQEGSKDSYS Trigger: TGAGTAGCTGTCCTTGCTCCCTTCCTGCTTTCTGCCTTTACACCATGGTTGGTTCAGGCCTGTCTCTTTCTCACACTGATCTGTTTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR TCA 90 bp | AGCAGTCAAGAAGAGCATTGGCTGTTCTTCCAGAAGACTCAGGTTTaGTTCCCACCACATACGTGGTGGCTCAAGTCTGTAACTCCAGTT | + |
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Preference number: 1 (lower is better) Translates to: SSQEEHWLFFQKTQV*FPPHTWWLKSVTPV Trigger: AACTGGAGTTACAGACTTGAGCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAATGCTCTTCTTGACTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR TCA 90 bp | TGCAAGCCACCTATCTCTGTCCTTCTCGTGGCTAGATTGATAGGCTaGCTGCCAATAGTCTTAGCTTTACTTAGGGTCTCATTAGCTACA | + |
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Preference number: 1 (lower is better) Translates to: CKPPISVLLVARLIG*LPIVLALLRVSLAT Trigger: TGTAGCTAATGAGACCCTAAGTAAAGCTAAGACTATTGGCAGTCAGCCTATCAATCTAGCCACGAGAAGGACAGAGATAGGTGGCTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAAGGGGGCAGGAGGAGAGTGGGGATTCTCTTTGGGTAGAGAGTCCAGGAGAAGGTGGGCTGGGGTGTaGTGGGATGATACACAGCTG | + |
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Preference number: 2 (lower is better) Translates to: GKGAGGEWGFSLGRESRRRWAGV*WDDTQL Trigger: CAGCTGTGTATCATCCCATCACACCCCAGCCCACCT...TCTCCTGGACTCTCTACCCAAAGAGAATCCCCACTCTCCTCCTGCCCCCTTCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | CTAAGCAGGGGAGAGACTAGGTCTGGACTTCCTCCCATCCAGGGAAGGGGGCAGGTGGGTAGCCTGGATTaGAGGGAGATGGATGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: LSRGETRSGLPPIQGRGQVGSLD*REMDGK Trigger: CTTCCCATCCATCTCCCTCCAATCCAGGCTACCCAC...CTGCCCCCTTCCCTGGATGGGAGGAAGTCCAGACCTAGTCTCTCCCCTGCTTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAAGGGGGCAGGAGGAGAGTGGGGATTCTCTTTGGGTAGAGAGTCCAGGAGAGTATCACTGGGGTTTTaGCTGGGAGGTAGCCAGATC | + |
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Preference number: 2 (lower is better) Translates to: GKGAGGEWGFSLGRESRRVSLGF*LGGSQI Trigger: GATCTGGCTACCTCCCAGTCAAAACCCCAGTGATAC...TCTCCTGGACTCTCTACCCAAAGAGAATCCCCACTCTCCTCCTGCCCCCTTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGCAGAGCTCTGTCCCAGGCTCTGGAGTGTGAATGTGAATTCACACACTCCTGGATTGGAGGGAGATaGATGGGAAGGTGGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: VCRALSQALECECEFTHSWIGGR*MGRWAG Trigger: CCCAGCCCACCTTCCCATCCATCTCCCTCCAATCCA...GGAGTGTGTGAATTCACATTCACACTCCAGAGCCTGGGACAGAGCTCTGCACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAGGAGAGCAGGAGTTGGAGGGAGATGGATaGGAAGGTGGGCTGGGGTGT | + |
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Preference number: 2 (lower is better) Translates to: CVCVCVCVCVCVFEGEQELEGDG*EGGLGC Trigger: ACACCCCAGCCCACCTTCCCATCCATCTCCCTCCAA...CTCCTGCTCTCCTTCAAACACACACACACACACACACACACACACACACACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | AACAGTGGGGCAGGCACCGTGAGAGAAACAGATCAGTGTGAGAAAGAGACAGGCGTGTGTGTGTGTGTTTaGAGGAGAGCAGGAGCCATT | + |
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Preference number: 2 (lower is better) Translates to: NSGAGTVRETDQCEKETGVCVCV*RRAGAI Trigger: AATGGCTCCTGCTCTCCTTCAAACACACACACACAC...GCCTGTCTCTTTCTCACACTGATCTGTTTCTCTCACGGTGCCTGCCCCACTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCATTCCAGAAGTATCTTaGGTGCCAACAGTGGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: LGRESRRCHKKTPGAQRAIPEVS*VPTVGQ Trigger: CTGCCCCACTGTTGGCACTCAAGATACTTCTGGAAT...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCGACTGCAGCTGCCAATaGAGGACACTCAAGAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: LGRESRRCHKKTPGAQRADCSCQ*RTLKKA Trigger: AGCTTTCTTGAGTGTCCTCCATTGGCAGCTGCAGTC...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCGGCCTGAACCAACCATaGTGTAAAGGCAGAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LGRESRRCHKKTPGAQRAGLNQP*CKGRKQ Trigger: CTGCTTTCTGCCTTTACACCATGGTTGGTTCAGGCC...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCAAGTGTGAGAGGAAATaGAAGACGGCCAGGGAATCT | + |
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Preference number: 2 (lower is better) Translates to: LGRESRRCHKKTPGAQRAKCERK*KTARES Trigger: AGATTCCCTGGCCGTCTTTCATTTCCTCTCACACTT...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCTGCCAATGGAGGACACTCAAGAAAGCTGGAGGTTTAATGTGGTTATGGGATCTGACTCCAGTGCCTaGCACATGGAAGGAAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: QLPMEDTQESWRFNVVMGSDSSA*HMEGRR Trigger: CCTCCTTCCTTCCATGTGCCAGGCACTGGAGTCAGA...TCCCATAACCACATTAAACCTCCAGCTTTCTTGAGTGTCCTCCATTGGCAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGCAGAGCTCTGTCCCAGGCTCTGGAGTGTGAATGTGAATTCACACACTCCGCTGGAGGTTTAATGTaGTTATGGGAGACGCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: VCRALSQALECECEFTHSAGGLM*LWETLL Trigger: AAGCAGCGTCTCCCATAACCACATTAAACCTCCAGC...GGAGTGTGTGAATTCACATTCACACTCCAGAGCCTGGGACAGAGCTCTGCACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | GTGTGCAGAGCTCTGTCCCAGGCTCTGGAGTGTGAATGTGAATTCACACACTCCAAGAATCTGGAAGTGTaGGAGGAAATGAAAGACGGC | + |
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Preference number: 2 (lower is better) Translates to: VCRALSQALECECEFTHSKNLEV*EEMKDG Trigger: GCCGTCTTTCATTTCCTCTCACACTTCCAGATTCTT...GGAGTGTGTGAATTCACATTCACACTCCAGAGCCTGGGACAGAGCTCTGCACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCGGCTTGTACAGGAAGTaGCATATTGGAACAGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: LGRESRRCHKKTPGAQRAGLYRK*HIGTED Trigger: ATCCTCTGTTCCAATATGTCACTTCCTGTACAAGCC...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCAGAAACAGATCAGTGTaGGAAAGAGACAGGCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: LGRESRRCHKKTPGAQRARNRSV*ERDRPE Trigger: TTCAGGCCTGTCTCTTTCTCACACTGATCTGTTTCT...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTCTTTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGCACTGGGGTTTTGACTaGGAGGTAGCCAGATCAGTT | + |
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Preference number: 2 (lower is better) Translates to: FSLGRESRRCHKKTPGAQHWGFD*EVARSV Trigger: AACTGATCTGGCTACCTCCCAGTCAAAACCCCAGTG...CTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAAAGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CAA 90 bp | CAGCAGTCAAGAAGAGCATTGGCTGTTCTTCCAGAAGACTCAGGTTaGATTCCCACCACATACGTGGTGGCTCAAGTCTGTAACTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: QQSRRALAVLPEDSG*IPTTYVVAQVCNSS Trigger: ACTGGAGTTACAGACTTGAGCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAATGCTCTTCTTGACTGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CAA 90 bp | AATATTCTCCCTCAGGGGCTGGAGACTCAGCAGTCAAGAAGAGCATaGGCTGTTCTTCCAGAAGACTCAGGTTTGATTCCCACCACATAC | + |
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Preference number: 2 (lower is better) Translates to: NILPQGLETQQSRRA*AVLPEDSGLIPTTY Trigger: GTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAATGCTCTTCTTGACTGCTGAGTCTCCAGCCCCTGAGGGAGAATATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAGGAGAGCAGGAGAAAAAGCTTGGGAATTaGGAGTCTGAGGTTTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: CVCVCVCVCVCVFEGEQEKKLGN*ESEVWA Trigger: CGCCCAAACCTCAGACTCTCAATTCCCAAGCTTTTT...CTCCTGCTCTCCTTCAAACACACACACACACACACACACACACACACACACACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAGGAGAGCAGGAGCTCTGTCCCAGGCTCTaGAGTGTGAATGTGAATTCA | + |
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Preference number: 2 (lower is better) Translates to: CVCVCVCVCVCVFEGEQELCPRL*SVNVNS Trigger: TGAATTCACATTCACACTCCAGAGCCTGGGACAGAG...CTCCTGCTCTCCTTCAAACACACACACACACACACACACACACACACACACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CCA 90 bp | ATTGGCTGTTCTTCCAGAAGACTCAGGTTTGATTCCCACCACATACGTGGTGGCAGTGGGGATTCTCTTTaGGTAGAGAGTCCAGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: IGCSSRRLRFDSHHIRGGSGDSL*VESPGD Trigger: ATCTCCTGGACTCTCTACCCAAAGAGAATCCCCACT...GCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR GCA 72 bp | AAGGTGCTGGTGACTAGTGTGCCACCAACTAAGGACTaGAGCTGCCAATGGAGGACACTCAAGAAAGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: KVLVTSVPPTKD*SCQWRTLKKAG Trigger: TCCAGCTTTCTTGAGTGTCCTCCATTGGCAGCTGCAGTCCTTAGTTGGTGGCACACTAGTCACCAGCACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CCA 72 bp | TTGCACCTTCTGTGTGCAGAGCTCTGTCCCAGGCTCTaGAGTGTGAATGTGAATTCACACACTCCGACCCTT | + |
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Preference number: 3 (lower is better) Translates to: LHLLCAELCPRL*SVNVNSHTPTL Trigger: AAGGGTCGGAGTGTGTGAATTCACATTCACACTCCAGAGCCTGGGACAGAGCTCTGCACACAGAAGGTGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR GCA 72 bp | TACAACCCAGATGAAGCAGTAAACTGCCCACTAGGCTaGTCATATCATCCCACTACAACCCAGGGCCCCATA | + |
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Preference number: 3 (lower is better) Translates to: YNPDEAVNCPLG*SYHPTTTQGPI Trigger: TATGGGGCCCTGGGTTGTAGTGGGATGATATGAGCAGCCTAGTGGGCAGTTTACTGCTTCATCTGGGTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CCA 72 bp | GGACTGCAGCTGCCAATGGAGGACACTCAAGAAAGCTaGAGGTTTAATGTGGTTATGGGAGACGCTGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: GLQLPMEDTQES*RFNVVMGDAAL Trigger: CAAAGCAGCGTCTCCCATAACCACATTAAACCTCCAGCTTTCTTGAGTGTCCTCCATTGGCAGCTGCAGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CAA 90 bp | ATTGGCTGTTCTTCCAGAAGACTCAGGTTTGATTCCCACCACATACGTGGTGGCTGTGTGTGTGTGTGTTaGAAGGAGAGCAGGAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: IGCSSRRLRFDSHHIRGGCVCVC*KESRSH Trigger: ATGGCTCCTGCTCTCCTTCAAACACACACACACACA...GCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR TCA 72 bp | GAAGAGCATTGGCTGTTCTTCCAGAAGACTCAGGTTTaGTTCCCACCACATACGTGGTGGCTCAAGTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: EEHWLFFQKTQV*FPPHTWWLKSV Trigger: TACAGACTTGAGCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAATGCTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR-3UTR CAA 90 bp | TTCTCTTTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGACATGTAAAAAGCTaGGGAATTGAGAGTCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: FSLGRESRRCHKKTPGAQRHVKS*GIESLR Trigger: CCTCAGACTCTCAATTCCCAAGCTTTTTACATGTCT...CTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAAAGAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR TCA 72 bp | TTGGAATGCATGGCTAGGGAAGGCTTGTACAGGAAGTaGCATATTGGAACAGAGGATCATGGGAGTAGATCT | + |
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Preference number: 3 (lower is better) Translates to: LECMAREGLYRK*HIGTEDHGSRS Trigger: AGATCTACTCCCATGATCCTCTGTTCCAATATGTCACTTCCTGTACAAGCCTTCCCTAGCCATGCATTCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | CTAAGCAGGGGAGAGACTAGGTCTGGACTTCCTCCCATCCAGGGAAGGGGGCAGGCAGGGGGCAGCCACTaGATGCTGCCGTTGGAACGC | + |
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Preference number: 4 (lower is better) Translates to: LSRGETRSGLPPIQGRGQAGGSH*MLPLER Trigger: GCGTTCCAACGGCAGCATCCAGTGGCTGCCCCCTGC...CTGCCCCCTTCCCTGGATGGGAGGAAGTCCAGACCTAGTCTCTCCCCTGCTTAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | CTAAGCAGGGGAGAGACTAGGTCTGGACTTCCTCCCATCCAGGGAAGGGGGCAGCCCTTGGAGGGTGCGTaGATCTGGAAGAGGGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: LSRGETRSGLPPIQGRGQPLEGA*IWKRGG Trigger: GCCACCCCTCTTCCAGATCCACGCACCCTCCAAGGG...CTGCCCCCTTCCCTGGATGGGAGGAAGTCCAGACCTAGTCTCTCCCCTGCTTAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR TCA 90 bp | CTAAGCAGGGGAGAGACTAGGTCTGGACTTCCTCCCATCCAGGGAAGGGGGCAGCAGGATGCCATGGTGTaGGTGCTGGGTGAACGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LSRGETRSGLPPIQGRGQQDAMV*VLGERW Trigger: CCACCGTTCACCCAGCACTCACACCATGGCATCCTG...CTGCCCCCTTCCCTGGATGGGAGGAAGTCCAGACCTAGTCTCTCCCCTGCTTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | AACAGTGGGGCAGGCACCGTGAGAGAAACAGATCAGTGTGAGAAAGAGACAGGCATCCCTGGGGAGGCCTaGCGTGTGGGAGCTGACTGC | + |
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Preference number: 4 (lower is better) Translates to: NSGAGTVRETDQCEKETGIPGEA*RVGADC Trigger: GCAGTCAGCTCCCACACGGCAGGCCTCCCCAGGGAT...GCCTGTCTCTTTCTCACACTGATCTGTTTCTCTCACGGTGCCTGCCCCACTGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GAAAGACGGCCAGGGAATCTAGTGGGTAGCCTGGATTGGAGGGAGATGGATGGGGGGAGGCCTGCCGTGTaGGAGCTGACTGCAGACTTA | + |
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Preference number: 4 (lower is better) Translates to: ERRPGNLVGSLDWREMDGGRPAV*ELTADL Trigger: TAAGTCTGCAGTCAGCTCCCACACGGCAGGCCTCCC...CCCATCCATCTCCCTCCAATCCAGGCTACCCACTAGATTCCCTGGCCGTCTTTC 59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | GAGCAAGGACAGCTACTCAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGGCAGCCACTGGATaGTGCCGTTGGAACGCACGA | + |
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Preference number: 4 (lower is better) Translates to: EQGQLLRGCVCVCVCVCVGAATG*CRWNAR Trigger: TCGTGCGTTCCAACGGCAGCATCCAGTGGCTGCCCC...CACACACACACACACACACACACACACACACCCTCTGAGTAGCTGTCCTTGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | AACAGTGGGGCAGGCACCGTGAGAGAAACAGATCAGTGTGAGAAAGAGACAGGCGAGGCCCTTGGAGGGTaGGTGGATCTGGAAGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: NSGAGTVRETDQCEKETGEALGG*VDLEEG Trigger: CCCCTCTTCCAGATCCACGCACCCTCCAAGGGCCTC...GCCTGTCTCTTTCTCACACTGATCTGTTTCTCTCACGGTGCCTGCCCCACTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GAAAGACGGCCAGGGAATCTAGTGGGTAGCCTGGATTGGAGGGAGATGGATGGGGATCTGGAAGAGGGGTaGCAGGAAGAGCCCCATGGT | + |
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Preference number: 4 (lower is better) Translates to: ERRPGNLVGSLDWREMDGDLEEG*QEEPHG Trigger: ACCATGGGGCTCTTCCTGCCACCCCTCTTCCAGATC...CCCATCCATCTCCCTCCAATCCAGGCTACCCACTAGATTCCCTGGCCGTCTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR TCA 90 bp | ACATGGAAGGAAGGAGGCCAGAATGGACTTCAGCCACCTAATCCCCCTCCTTCAGACCAGGGCGCTTCATaGAGAGGAAGGTGGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: TWKEGGQNGLQPPNPPPSDQGAS*RGRWAA Trigger: AGCTGCCCACCTTCCTCTTCATGAAGCGCCCTGGTC...TGAAGGAGGGGGATTAGGTGGCTGAAGTCCATTCTGGCCTCCTTCCTTCCATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | GGGAAGGGGGCAGGAGGAGAGTGGGGATTCTCTTTGGGTAGAGAGTCCAGGAGAACTCTCCAAATGCTGTaGGATGAAGCTGACGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: GKGAGGEWGFSLGRESRRTLQML*DEADAL Trigger: GAGGGCGTCAGCTTCATCGCACAGCATTTGGAGAGT...TCTCCTGGACTCTCTACCCAAAGAGAATCCCCACTCTCCTCCTGCCCCCTTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GCCAGAATGGACTTCAGCCACCTAATCCCCCTCCTTCAAGGGACTTACTCGAAGGAGGGTGCGTGGATCTaGAAGAGGGGTGGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ARMDFSHLIPLLQGTYSKEGAWI*KRGGRK Trigger: CTTCCTGCCACCCCTCTTCCAGATCCACGCACCCTC...CTTCGAGTAAGTCCCTTGAAGGAGGGGGATTAGGTGGCTGAAGTCCATTCTGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR TCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAGGAGAGCAGGAGCGGCAGTCCCCAGGCTaGAGCAGAGCGAACAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: CVCVCVCVCVCVFEGEQERQSPG*SRANRE Trigger: CTCTCTGTTCGCTCTGCTTCAGCCTGGGGACTGCCG...CTCCTGCTCTCCTTCAAACACACACACACACACACACACACACACACACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | GAGCAAGGACAGCTACTCAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCCTTGACCCAGGATaGCATGGTGTGAGTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: EQGQLLRGCVCVCVCVCVLLDPG*HGVSAG Trigger: CCCAGCACTCACACCATGGCATCCTGGGTCAAGGAG...CACACACACACACACACACACACACACACACCCTCTGAGTAGCTGTCCTTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | GAGCAAGGACAGCTACTCAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGGGAGCTGACTaGAGACTTAGGAGTGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: EQGQLLRGCVCVCVCVCVRVGAD*RLRSGR Trigger: CCTGCCACTCCTAAGTCTGCAGTCAGCTCCCACACG...CACACACACACACACACACACACACACACACCCTCTGAGTAGCTGTCCTTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | ATTGGCTGTTCTTCCAGAAGACTCAGGTTTGATTCCCACCACATACGTGGTGGCGGTTGGATGGGCTGCTaGGGCCTAAGGCAGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: IGCSSRRLRFDSHHIRGGGWMGC*GLRQRW Trigger: CCACCTCTGCCTTAGGCCCCAGCAGCCCATCCAACC...GCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | GAGCAAGGACAGCTACTCAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCTTCCTGTAGATCTTaGCGGAACCTCCCAGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: EQGQLLRGCVCVCVCVCVASCRS*RNLPED Trigger: GTCCTCTGGGAGGTTCCGGCAAGATCTACAGGAAGC...CACACACACACACACACACACACACACACACCCTCTGAGTAGCTGTCCTTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GTGTGCAGAGCTCTGTCCCAGGCTCTGGAGTGTGAATGTGAATTCACACACTCCTCACGTCCACATAGCTaGGGTCCTGTGGGTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: VCRALSQALECECEFTHSSRPHS*GPVGSL Trigger: CAGTGAACCCACAGGACCCCAGCTATGTGGACGTGA...GGAGTGTGTGAATTCACATTCACACTCCAGAGCCTGGGACAGAGCTCTGCACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | TTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGAGAGCCGCAGGAAGAGCCCCATaGTGCCCAGAATACACACAA | + |
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Preference number: 4 (lower is better) Translates to: LGRESRRCHKKTPGAQRAAGRAP*CPEYTQ Trigger: TTGTGTGTATTCTGGGCACCATGGGGCTCTTCCTGC...GGCTCTCTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CAA 72 bp | CCTCAGGGGCTGGAGACTCAGCAGTCAAGAAGAGCATaGGCTGTTCTTCCAGAAGACTCAGGTTTGATTCCC | + |
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Preference number: 4 (lower is better) Translates to: PQGLETQQSRRA*AVLPEDSGLIP Trigger: GGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAATGCTCTTCTTGACTGCTGAGTCTCCAGCCCCTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GCCAGAATGGACTTCAGCCACCTAATCCCCCTCCTTCAAGGGACTTACTCGAAGTTCACACTGATGAGCTaGGACAGTGATAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ARMDFSHLIPLLQGTYSKFTLMS*DSDSSR Trigger: CCTGGAGCTATCACTGTCCCAGCTCATCAGTGTGAA...CTTCGAGTAAGTCCCTTGAAGGAGGGGGATTAGGTGGCTGAAGTCCATTCTGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAGGAGAGCAGGAGATAGCTGGGGTCCTGTaGGTTCACTGTCCTTCGACC | + |
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Preference number: 4 (lower is better) Translates to: CVCVCVCVCVCVFEGEQEIAGVL*VHCPST Trigger: GGTCGAAGGACAGTGAACCCACAGGACCCCAGCTAT...CTCCTGCTCTCCTTCAAACACACACACACACACACACACACACACACACACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGGGGGCAGGAGGAGAGTGGGGATTCTCTTTGGGTAGAGAGTCCAGGAGAGGTTCACAAAGTACATaGAATTCCCATAGAGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: GKGAGGEWGFSLGRESRRGSQST*NSHRGW Trigger: CCAACCTCTATGGGAATTCCATGTACTTTGTGAACC...TCTCCTGGACTCTCTACCCAAAGAGAATCCCCACTCTCCTCCTGCCCCCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | GAGCAAGGACAGCTACTCAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCGAAGGGAAAGTaGTTCACCTCTATCTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: EQGQLLRGCVCVCVCVCVWSKGK*FTSILQ Trigger: CTGCAAGATAGAGGTGAAGCACTTTCCCTTCGACCA...CACACACACACACACACACACACACACACACCCTCTGAGTAGCTGTCCTTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | GCCAGAATGGACTTCAGCCACCTAATCCCCCTCCTTCAAGGGACTTACTCGAAGAACGCACGATCACGTTaGTGTAGACAGACACCTCAT | + |
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Preference number: 4 (lower is better) Translates to: ARMDFSHLIPLLQGTYSKNARSR*CRQTPH Trigger: ATGAGGTGTCTGTCTACACCAACGTGATCGTGCGTT...CTTCGAGTAAGTCCCTTGAAGGAGGGGGATTAGGTGGCTGAAGTCCATTCTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAGGAGAGCAGGAGAATTCCCATAGAGGTTaGATGGGCTGCTGGGGCCTA | + |
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Preference number: 4 (lower is better) Translates to: CVCVCVCVCVCVFEGEQENSHRG*MGCWGL Trigger: TAGGCCCCAGCAGCCCATCCAACCTCTATGGGAATT...CTCCTGCTCTCCTTCAAACACACACACACACACACACACACACACACACACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR GCA 90 bp | TTCTCTTTGGGTAGAGAGTCCAGGAGATGCCATAAGAAAACACCTGGAGCCCAGGCTTCACCTCTATCTTaGAGGCACTCTTGTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: FSLGRESRRCHKKTPGAQASPLS*RHSCRW Trigger: CCATCTACAAGAGTGCCTGCAAGATAGAGGTGAAGC...CTGGGCTCCAGGTGTTTTCTTATGGCATCTCCTGGACTCTCTACCCAAAGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CAA 72 bp | GCATGGCTAGGGAAGGCTTGTACAGGAAGTGACATATaGGAACAGAGGATCATGGGAGTAGATCTCTGCCTA | + |
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Preference number: 4 (lower is better) Translates to: AWLGKACTGSDI*EQRIMGVDLCL Trigger: TAGGCAGAGATCTACTCCCATGATCCTCTGTTCCAATATGTCACTTCCTGTACAAGCCTTCCCTAGCCATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| 3UTR CAA 72 bp | AGAAGAGCATTGGCTGTTCTTCCAGAAGACTCAGGTTaGATTCCCACCACATACGTGGTGGCTCAAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: RRALAVLPEDSG*IPTTYVVAQVC Trigger: ACAGACTTGAGCCACCACGTATGTGGTGGGAATCAAACCTGAGTCTTCTGGAAGAACAGCCAATGCTCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR TCA 90 bp | CAGCTGCCAATGGAGGACACTCAAGAAAGCTGGAGGTTTAATGTGGTTATGGGAAGATGCTGGTGGTCATaGTCTGTTCTCGCTCATTCA | + |
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Preference number: 4 (lower is better) Translates to: QLPMEDTQESWRFNVVMGRCWWS*SVLAHS Trigger: TGAATGAGCGAGAACAGATCATGACCACCAGCATCT...TCCCATAACCACATTAAACCTCCAGCTTTCTTGAGTGTCCTCCATTGGCAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS GCA 90 bp | CCGGAACCTCCCAGAGGACCTCAGCCGGGCATCCCTGGGGAGGCCTaGCGTGTGGGAGCTGACTGCAGACTTAGGAGTGGCAGGGACAGG | + |
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Preference number: 5 (lower is better) Translates to: PEPPRGPQPGIPGEA*RVGADCRLRSGRDR Trigger: CCTGTCCCTGCCACTCCTAAGTCTGCAGTCAGCTCCCACACGGCAGGCCTCCCCAGGGATGCCCGGCTGAGGTCCTCTGGGAGGTTCCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS TCA 90 bp | GAGGTGGACGTAGCTTCAGCTGTGGTCAAGTGCAGCTGGCTGGAATaGGGGACCCTGGCGGGGCTGACTTCCAGACCAGGGCGCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: EVDVASAVVKCSWLE*GTLAGLTSRPGRFM Trigger: CATGAAGCGCCCTGGTCTGGAAGTCAGCCCCGCCAGGGTCCCTCATTCCAGCCAGCTGCACTTGACCACAGCTGAAGCTACGTCCACCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS GCA 90 bp | TGCTGTGCGATGAAGCTGACGCCCTCTAATGCTTCCTGTAGATCTTaGCGGAACCTCCCAGAGGACCTCAGCCGGGCATCCCTGGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CCAMKLTPSNASCRS*RNLPEDLSRASLGR Trigger: CCTCCCCAGGGATGCCCGGCTGAGGTCCTCTGGGAGGTTCCGGCAAGATCTACAGGAAGCATTAGAGGGCGTCAGCTTCATCGCACAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CAA 90 bp | CTAAGCAGGGGAGAGACTAGGTCTGGACTTCCTCCCATCCAGGGAAGGGGGCAGTGCAGGAAGCACTCCTaGACCCAGGATGCCATGGTG | + |
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Preference number: 5 (lower is better) Translates to: LSRGETRSGLPPIQGRGQCRKHS*TQDAMV Trigger: CACCATGGCATCCTGGGTCAAGGAGTGCTTCCTGCA...CTGCCCCCTTCCCTGGATGGGAGGAAGTCCAGACCTAGTCTCTCCCCTGCTTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS CCA 90 bp | CAGGGGGCAGCCACTGGATGCTGCCGTTGGAACGCACGATCACGTTaGTGTAGACAGACACCTCATAGGTCCCATCGGCATTGTTGTACA | + |
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Preference number: 5 (lower is better) Translates to: QGAATGCCRWNARSR*CRQTPHRSHRHCCT Trigger: TGTACAACAATGCCGATGGGACCTATGAGGTGTCTGTCTACACCAACGTGATCGTGCGTTCCAACGGCAGCATCCAGTGGCTGCCCCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CAA 90 bp | ACATGGAAGGAAGGAGGCCAGAATGGACTTCAGCCACCTAATCCCCCTCCTTCAGAACGGTGGTGCACATaGAGGACACACACAGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: TWKEGGQNGLQPPNPPPSERWCT*RTHTVV Trigger: CACCACTGTGTGTGTCCTCAATGTGCACCACCGTTC...TGAAGGAGGGGGATTAGGTGGCTGAAGTCCATTCTGGCCTCCTTCCTTCCATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS-3UTR CAA 90 bp | AACAGTGGGGCAGGCACCGTGAGAGAAACAGATCAGTGTGAGAAAGAGACAGGCGCAACCAGACTCGCTTaGCAGGAATCCTCAGAATGT | + |
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Preference number: 5 (lower is better) Translates to: NSGAGTVRETDQCEKETGATRLA*QESSEC Trigger: ACATTCTGAGGATTCCTGCAAAGCGAGTCTGGTTGC...GCCTGTCTCTTTCTCACACTGATCTGTTTCTCTCACGGTGCCTGCCCCACTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS GCA 72 bp | ATGAAGCTGACGCCCTCTAATGCTTCCTGTAGATCTTaGCGGAACCTCCCAGAGGACCTCAGCCGGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: MKLTPSNASCRS*RNLPEDLSRAS Trigger: GGATGCCCGGCTGAGGTCCTCTGGGAGGTTCCGGCAAGATCTACAGGAAGCATTAGAGGGCGTCAGCTTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS CCA 72 bp | GCCACTGGATGCTGCCGTTGGAACGCACGATCACGTTaGTGTAGACAGACACCTCATAGGTCCCATCGGCAT | + |
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Preference number: 6 (lower is better) Translates to: ATGCCRWNARSR*CRQTPHRSHRH Trigger: ATGCCGATGGGACCTATGAGGTGTCTGTCTACACCAACGTGATCGTGCGTTCCAACGGCAGCATCCAGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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| CDS TCA 72 bp | ACCGCTGGGGGTAAAGTCATCCATGATGGCTGTGGGTaGTTTAAGAACCATGTCAATCTCTGTGTGGTCATA | + |
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Preference number: 6 (lower is better) Translates to: TAGGKVIHDGCG*FKNHVNLCVVI Trigger: TATGACCACACAGAGATTGACATGGTTCTTAAATCACCCACAGCCATCATGGATGACTTTACCCCCAGCGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034854.8 |
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