Pregenerated sensors for CHRNA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029205Ensembl transcript IDs: ENSMUST00000031108.9, ENSMUST00000201814.4
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CACACCAGATCGCTGGGAATCCTGATGGAGTCCAGCCCGTCATACTaGTCTCGATCCCACGTGAGGTACGCATCGTGCCAAGTTTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: HTRSLGILMESSPSY*SRSHVRYASCQVWR Trigger: CCGCCAAACTTGGCACGATGCGTACCTCACGTGGGATCGAGACCAGTATGACGGGCTGGACTCCATCAGGATTCCCAGCGATCTGGTGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CCA 90 bp | ACCTTGGCCCAGTGTGGTACTGGCCGGGCTTCCGCCCCACAGAAGTaGATATTCATCACCATGATGGTAAGGGCTGTGGAGGCGGTGATC | + |
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Preference number: 5 (lower is better) Translates to: TLAQCGTGRASAPQK*IFITMMVRAVEAVI Trigger: GATCACCGCCTCCACAGCCCTTACCATCATGGTGATGAATATCCACTTCTGTGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS TCA 90 bp | CACCCACATCGTAGACAAACAAGATCCTGGACATGTATTTCAGGATaGCCACCTTGGCCCAGTGTGGTACTGGCCGGGCTTCCGCCCCAC | + |
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Preference number: 5 (lower is better) Translates to: HPHRRQTRSWTCISG*PPWPSVVLAGLPPH Trigger: GTGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCCAGGATCTTGTTTGTCTACGATGTGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 90 bp | CAGGTTGGACCCTGGAAGTTTGCCATAAACCTTCGTGATTTGTTCTaGCTCCTGGCTGTGACGGGGGCTAAGGCAGCTCTCACCCACATC | + |
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Preference number: 5 (lower is better) Translates to: QVGPWKFAINLRDLF*LLAVTGAKAALTHI Trigger: GATGTGGGTGAGAGCTGCCTTAGCCCCCGTCACAGCCAGGAGCCAGAACAAATCACGAAGGTTTATGGCAAACTTCCAGGGTCCAACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 90 bp | CCTGGACATGTATTTCAGGATGACCACCTTGGCCCAGTGTGGTACTaGCCGGGCTTCCGCCCCACAGAAGTGGATATTCATCACCATGAT | + |
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Preference number: 5 (lower is better) Translates to: PGHVFQDDHLGPVWY*PGFRPTEVDIHHHD Trigger: ATCATGGTGATGAATATCCACTTCTGTGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 90 bp | CAAGATCCTGGACATGTATTTCAGGATGACCACCTTGGCCCAGTGTaGTACTGGCCGGGCTTCCGCCCCACAGAAGTGGATATTCATCAC | + |
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Preference number: 5 (lower is better) Translates to: QDPGHVFQDDHLGPV*YWPGFRPTEVDIHH Trigger: GTGATGAATATCCACTTCTGTGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCCAGGATCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS TCA 90 bp | AGAGGGACGTTTTCTGAGGCTGGCATGATCTCTGCCACCATTAGCTaGAATACAGTCATGGCCAATAGGATGGTCACTCCCAGAGAGACC | + |
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Preference number: 5 (lower is better) Translates to: RGTFSEAGMISATIS*NTVMANRMVTPRET Trigger: GGTCTCTCTGGGAGTGACCATCCTATTGGCCATGACTGTATTTCAGCTAATGGTGGCAGAGATCATGCCAGCCTCAGAAAACGTCCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS GCA 90 bp | GTCTTCAAAAAGATCGCTAAACAATTTCTGGGCATACTTTCCATTTaGTGTCTCTACGGCTTGTGGCTGGCGAGGCCTCCCATGCACGTC | + |
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Preference number: 5 (lower is better) Translates to: VFKKIAKQFLGILSI*CLYGLWLARPPMHV Trigger: GACGTGCATGGGAGGCCTCGCCAGCCACAAGCCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTTTTTGAAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201814.4 |
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| CDS CCA 90 bp | CGTGACCTGCAGAGTGACGTTCAGCACCGCGTCCGTATCTTCTACTaGACGCAGAGCATTGGAGTAGTCTTCAAAAAGATCGCTAAACAA | + |
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Preference number: 5 (lower is better) Translates to: RDLQSDVQHRVRIFY*TQSIGVVFKKIAKQ Trigger: TTGTTTAGCGATCTTTTTGAAGACTACTCCAATGCTCTGCGTCCAGTAGAAGATACGGACGCGGTGCTGAACGTCACTCTGCAGGTCACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CCA 90 bp | CTTTCTGGAAAGGTCTTTGTTTCTGGATGCTTTCAGGTTGGACCCTaGAAGTTTGCCATAAACCTTCGTGATTTGTTCTGGCTCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LSGKVFVSGCFQVGP*KFAINLRDLFWLLA Trigger: AGCCAGGAGCCAGAACAAATCACGAAGGTTTATGGCAAACTTCCAGGGTCCAACCTGAAAGCATCCAGAAACAAAGACCTTTCCAGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS GCA 90 bp | GAGTTTTCTCAGTTCCTTCTTTCTGGAAAGGTCTTTGTTTCTGGATaGTTTCAGGTTGGACCCTGGAAGTTTGCCATAAACCTTCGTGAT | + |
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Preference number: 5 (lower is better) Translates to: EFSQFLLSGKVFVSG*FQVGPWKFAINLRD Trigger: ATCACGAAGGTTTATGGCAAACTTCCAGGGTCCAACCTGAAAGCATCCAGAAACAAAGACCTTTCCAGAAAGAAGGAACTGAGAAAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS GCA 90 bp | GTCTTCAAAAAGATCGCTAAACAATTTCTGGGCATACTTTCCATTTaGTGTCTCTACGGCTTTGATTCCAGAAGCAGCAAAATACATCCA | + |
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Preference number: 5 (lower is better) Translates to: VFKKIAKQFLGILSI*CLYGFDSRSSKIHP Trigger: TGGATGTATTTTGCTGCTTCTGGAATCAAAGCCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTTTTTGAAGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 72 bp | TCCCAGGTGATGAGCCCATCGTACCGCAGGACCACGTaGGTGTTCACCGGCTCTGAAGACTCGTCATCGGCC | + |
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Preference number: 6 (lower is better) Translates to: SQVMSPSYRRTT*VFTGSEDSSSA Trigger: GGCCGATGACGAGTCTTCAGAGCCGGTGAACACCAACGTGGTCCTGCGGTACGATGGGCTCATCACCTGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS TCA 72 bp | CAATGTCCGGCCTCCACACCAGATCGCTGGGAATCCTaGTGGAGTCCAGCCCGTCATACTGGTCTCGATCCC | + |
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Preference number: 6 (lower is better) Translates to: QCPASTPDRWES*WSPARHTGLDP Trigger: GGGATCGAGACCAGTATGACGGGCTGGACTCCATCAGGATTCCCAGCGATCTGGTGTGGAGGCCGGACATTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS TCA 72 bp | TGGAGTCCAGCCCGTCATACTGGTCTCGATCCCACGTaGGGTACGCATCGTGCCAAGTTTGGCGGATCCACA | + |
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Preference number: 6 (lower is better) Translates to: WSPARHTGLDPT*GTHRAKFGGST Trigger: TGTGGATCCGCCAAACTTGGCACGATGCGTACCTCACGTGGGATCGAGACCAGTATGACGGGCTGGACTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CCA 72 bp | TCGCTGGGAATCCTGATGGAGTCCAGCCCGTCATACTaGTCTCGATCCCACGTGAGGTACGCATCGTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: SLGILMESSPSY*SRSHVRYASCQ Trigger: TTGGCACGATGCGTACCTCACGTGGGATCGAGACCAGTATGACGGGCTGGACTCCATCAGGATTCCCAGCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CCA 72 bp | GGACATGTATTTCAGGATGACCACCTTGGCCCAGTGTaGTACTGGCCGGGCTTCCGCCCCACAGAAGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: GHVFQDDHLGPV*YWPGFRPTEVD Trigger: ATCCACTTCTGTGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 72 bp | CAGTGTGGTACTGGCCGGGCTTCCGCCCCACAGAAGTaGATATTCATCACCATGATGGTAAGGGCTGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: QCGTGRASAPQK*IFITMMVRAVE Trigger: CTCCACAGCCCTTACCATCATGGTGATGAATATCCACTTCTGTGGGGCGGAAGCCCGGCCAGTACCACACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 72 bp | AACAAGATCCTGGACATGTATTTCAGGATGACCACCTaGGCCCAGTGTGGTACTGGCCGGGCTTCCGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: NKILDMYFRMTT*AQCGTGRASAP Trigger: TGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCCAGGATCTTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 72 bp | GTATTTCAGGATGACCACCTTGGCCCAGTGTGGTACTaGCCGGGCTTCCGCCCCACAGAAGTGGATATTCAT | + |
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Preference number: 6 (lower is better) Translates to: VFQDDHLGPVWY*PGFRPTEVDIH Trigger: ATGAATATCCACTTCTGTGGGGCGGAAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 90 bp | TGCTTTCAGGTTGGACCCTGGAAGTTTGCCATAAACCTTCGTGATTaGTTCTGGCTCCTGGCTGTGACGGGGGCTAAGGCAGCTCTCACC | + |
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Preference number: 6 (lower is better) Translates to: CFQVGPWKFAINLRD*FWLLAVTGAKAALT Trigger: GGTGAGAGCTGCCTTAGCCCCCGTCACAGCCAGGAGCCAGAACAAATCACGAAGGTTTATGGCAAACTTCCAGGGTCCAACCTGAAAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS TCA 72 bp | ATCGTACCGCAGGACCACGTTGGTGTTCACCGGCTCTaGAGACTCGTCATCGGCCTTGTTGTAGAGGACAAT | + |
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Preference number: 6 (lower is better) Translates to: IVPQDHVGVHRL*RLVIGLVVEDN Trigger: ATTGTCCTCTACAACAAGGCCGATGACGAGTCTTCAGAGCCGGTGAACACCAACGTGGTCCTGCGGTACGAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CCA 72 bp | CCACCATTAGCTGAAATACAGTCATGGCCAATAGGATaGTCACTCCCAGAGAGACCTTCTCCCCGGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PPLAEIQSWPIG*SLPERPSPRRL Trigger: CAGCCTCCGGGGAGAAGGTCTCTCTGGGAGTGACCATCCTATTGGCCATGACTGTATTTCAGCTAATGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 72 bp | GTCTCGATCCCACGTGAGGTACGCATCGTGCCAAGTTaGGCGGATCCACAGGTAGGCTGTCAGAATCTGATT | + |
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Preference number: 6 (lower is better) Translates to: VSIPREVRIVPS*ADPQVGCQNLI Trigger: AATCAGATTCTGACAGCCTACCTGTGGATCCGCCAAACTTGGCACGATGCGTACCTCACGTGGGATCGAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CAA 72 bp | GTTGGACCCTGGAAGTTTGCCATAAACCTTCGTGATTaGTTCTGGCTCCTGGCTGTGACGGGGGCTAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: VGPWKFAINLRD*FWLLAVTGAKA Trigger: TGCCTTAGCCCCCGTCACAGCCAGGAGCCAGAACAAATCACGAAGGTTTATGGCAAACTTCCAGGGTCCAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 72 bp | TCTATGACCTTGGCGACCTTCTTCCACTCGCTGCCCTaGGAGTTGGTGGCCTTGTGGTCCTTGAGACATTTG | + |
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Preference number: 6 (lower is better) Translates to: SMTLATFFHSLP*ELVALWSLRHL Trigger: CAAATGTCTCAAGGACCACAAGGCCACCAACTCCAAGGGCAGCGAGTGGAAGAAGGTCGCCAAGGTCATAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 90 bp | GTCATACTGGTCTCGATCCCACGTGAGGTACGCATCGTGCCAAGTTaGGCGGATCCACAGGTAGGCTGTCAGAATCTGATTTCTCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: VILVSIPREVRIVPS*ADPQVGCQNLISLV Trigger: GACGAGAGAAATCAGATTCTGACAGCCTACCTGTGGATCCGCCAAACTTGGCACGATGCGTACCTCACGTGGGATCGAGACCAGTATGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS TCA 72 bp | CGTAGACAAACAAGATCCTGGACATGTATTTCAGGATaGCCACCTTGGCCCAGTGTGGTACTGGCCGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: RRQTRSWTCISG*PPWPSVVLAGL Trigger: AAGCCCGGCCAGTACCACACTGGGCCAAGGTGGTCATCCTGAAATACATGTCCAGGATCTTGTTTGTCTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 90 bp | CGGTCTATGACCTTGGCGACCTTCTTCCACTCGCTGCCCTTGGAGTaGGTGGCCTTGTGGTCCTTGAGACATTTGGCAATGTATTCAATA | + |
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Preference number: 6 (lower is better) Translates to: RSMTLATFFHSLPLE*VALWSLRHLAMYSI Trigger: TATTGAATACATTGCCAAATGTCTCAAGGACCACAAGGCCACCAACTCCAAGGGCAGCGAGTGGAAGAAGGTCGCCAAGGTCATAGACCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 90 bp | AAGAAACGGTCTATGACCTTGGCGACCTTCTTCCACTCGCTGCCCTaGGAGTTGGTGGCCTTGTGGTCCTTGAGACATTTGGCAATGTAT | + |
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Preference number: 6 (lower is better) Translates to: KKRSMTLATFFHSLP*ELVALWSLRHLAMY Trigger: ATACATTGCCAAATGTCTCAAGGACCACAAGGCCACCAACTCCAAGGGCAGCGAGTGGAAGAAGGTCGCCAAGGTCATAGACCGTTTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 90 bp | AACACCATAGCGAAGAAAATCCACATGAAGAAACGGTCTATGACCTaGGCGACCTTCTTCCACTCGCTGCCCTTGGAGTTGGTGGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: NTIAKKIHMKKRSMT*ATFFHSLPLELVAL Trigger: CAAGGCCACCAACTCCAAGGGCAGCGAGTGGAAGAAGGTCGCCAAGGTCATAGACCGTTTCTTCATGTGGATTTTCTTCGCTATGGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS GCA 72 bp | AAGATCGCTAAACAATTTCTGGGCATACTTTCCATTTaGTGTCTCTACGGCTTGTGGCTGGCGAGGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: KIAKQFLGILSI*CLYGLWLARPP Trigger: GGGAGGCCTCGCCAGCCACAAGCCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201814.4 |
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| CDS CAA 72 bp | GCGAAGAAAATCCACATGAAGAAACGGTCTATGACCTaGGCGACCTTCTTCCACTCGCTGCCCTTGGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: AKKIHMKKRSMT*ATFFHSLPLEL Trigger: CAACTCCAAGGGCAGCGAGTGGAAGAAGGTCGCCAAGGTCATAGACCGTTTCTTCATGTGGATTTTCTTCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 72 bp | CAGAGTGACGTTCAGCACCGCGTCCGTATCTTCTACTaGACGCAGAGCATTGGAGTAGTCTTCAAAAAGATC | + |
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Preference number: 6 (lower is better) Translates to: QSDVQHRVRIFY*TQSIGVVFKKI Trigger: GATCTTTTTGAAGACTACTCCAATGCTCTGCGTCCAGTAGAAGATACGGACGCGGTGCTGAACGTCACTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031108.9 ENSMUST00000201814.4 |
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| CDS CAA 72 bp | ACCTTCTTCCACTCGCTGCCCTTGGAGTTGGTGGCCTaGTGGTCCTTGAGACATTTGGCAATGTATTCAATA | + |
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Preference number: 6 (lower is better) Translates to: TFFHSLPLELVA*WSLRHLAMYSI Trigger: TATTGAATACATTGCCAAATGTCTCAAGGACCACAAGGCCACCAACTCCAAGGGCAGCGAGTGGAAGAAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS TCA 72 bp | TCTGGGCATACTTTCCATTTGCTGTCTCTACGGCTTTaGTTCCAGAAGCAGCAAAATACATCCAGCAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: SGHTFHLLSLRL*FQKQQNTSSKR Trigger: CCTTTTGCTGGATGTATTTTGCTGCTTCTGGAATCAAAGCCGTAGAGACAGCAAATGGAAAGTATGCCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS GCA 72 bp | CAGTTCCTTCTTTCTGGAAAGGTCTTTGTTTCTGGATaGTTTCAGGTTGGACCCTGGAAGTTTGCCATAAAC | + |
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Preference number: 6 (lower is better) Translates to: QFLLSGKVFVSG*FQVGPWKFAIN Trigger: GTTTATGGCAAACTTCCAGGGTCCAACCTGAAAGCATCCAGAAACAAAGACCTTTCCAGAAAGAAGGAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CCA 72 bp | AAGGTCTTTGTTTCTGGATGCTTTCAGGTTGGACCCTaGAAGTTTGCCATAAACCTTCGTGATTTGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: KVFVSGCFQVGP*KFAINLRDLFW Trigger: CCAGAACAAATCACGAAGGTTTATGGCAAACTTCCAGGGTCCAACCTGAAAGCATCCAGAAACAAAGACCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 72 bp | AGGAGTTTTCTCAGTTCCTTCTTTCTGGAAAGGTCTTaGTTTCTGGATGCTTTCAGGTTGGACCCTGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: RSFLSSFFLERS*FLDAFRLDPGS Trigger: ACTTCCAGGGTCCAACCTGAAAGCATCCAGAAACAAAGACCTTTCCAGAAAGAAGGAACTGAGAAAACTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS CAA 90 bp | CTAAACAATTTCTGGGCATACTTTCCATTTGCTGTCTCTACGGCTTaGATTCCAGAAGCAGCAAAATACATCCAGCAAAAGGAGATGCAG | + |
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Preference number: 6 (lower is better) Translates to: LNNFWAYFPFAVSTA*IPEAAKYIQQKEMQ Trigger: CTGCATCTCCTTTTGCTGGATGTATTTTGCTGCTTCTGGAATCAAAGCCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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| CDS GCA 72 bp | AAGATCGCTAAACAATTTCTGGGCATACTTTCCATTTaGTGTCTCTACGGCTTTGATTCCAGAAGCAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: KIAKQFLGILSI*CLYGFDSRSSK Trigger: TTTGCTGCTTCTGGAATCAAAGCCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031108.9 |
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