Pregenerated sensors for CHRNA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030525Ensembl transcript IDs: ENSMUST00000032738.7
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTaGTTTCAGCCTGGGTCTGTGCATGGCAAAGGCAGACAGCCTATC | + |
|
Preference number: 1 (lower is better) Translates to: CKAAVEMDPVGSALD*FQPGSVHGKGRQPI Trigger: GATAGGCTGTCTGCCTTTGCCATGCACAGACCCAGGCTGAAACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR CCA 90 bp | CCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTaGATTGGTTTCAGCCTGGGTCTGTGCATGGCAAAGGCAGACAGC | + |
|
Preference number: 1 (lower is better) Translates to: PFARQLLKWIQWEVL*IGFSLGLCMAKADS Trigger: GCTGTCTGCCTTTGCCATGCACAGACCCAGGCTGAAACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR GCA 90 bp | AGTAGCAGAGGGGTTTGTAGTTTGTATTTGAATTTGACTTCCTTTTaGAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGAT | + |
|
Preference number: 1 (lower is better) Translates to: SSRGVCSLYLNLTSF*KAAVEMDPVGSALD Trigger: ATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGTCAAATTCAAATACAAACTACAAACCCCTCTGCTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR-3UTR CCA 90 bp | CTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATGCGCCACAAACTGGACAGGGCAAATGACCACATaGTGCCCCTGCCGAGTACAA | + |
|
Preference number: 2 (lower is better) Translates to: LSGEPMTRGMQACATNWTGQMTT*CPCRVQ Trigger: TTGTACTCGGCAGGGGCACCATGTGGTCATTTGCCC...TGTCCAGTTTGTGGCGCATGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR-3UTR CCA 90 bp | ACTTCCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATGCCTGGGTCTGTGCATaGCAAAGGCAGACAGCCTAT | + |
|
Preference number: 2 (lower is better) Translates to: TSFCKAAVEMDPVGSALDAWVCA*QRQTAY Trigger: ATAGGCTGTCTGCCTTTGCCATGCACAGACCCAGGC...ATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR-3UTR GCA 90 bp | ACTTCCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTTCTCTTCTTATCTGTaGATCTCCTACATGATAACA | + |
|
Preference number: 2 (lower is better) Translates to: TSFCKAAVEMDPVGSALDFSSYL*ISYMIT Trigger: TGTTATCATGTAGGAGATGCACAGATAAGAAGAGAA...ATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR CAA 90 bp | ACAGAGAATGTAAGTAGCAGAGGGGTTTGTAGTTTGTATTTGAATTaGACTTCCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGA | + |
|
Preference number: 2 (lower is better) Translates to: TENVSSRGVCSLYLN*TSFCKAAVEMDPVG Trigger: TCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGTCAAATTCAAATACAAACTACAAACCCCTCTGCTACTTACATTCTCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR GCA 72 bp | CTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATaGGCCACAAACTGGACAGGCCTCTCTACTGGCCTA | + |
|
Preference number: 3 (lower is better) Translates to: LSGEPMTRGMQA*ATNWTGLSTGL Trigger: TAGGCCAGTAGAGAGGCCTGTCCAGTTTGTGGCGCATGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR GCA 72 bp | TGGGAAGTGCTCTGGATTGGTTTCAGCCTGGGTCTGTaGATGGCAAAGGCAGACAGCCTATCGGGTGAGCCC | + |
|
Preference number: 3 (lower is better) Translates to: WEVLWIGFSLGL*MAKADSLSGEP Trigger: GGGCTCACCCGATAGGCTGTCTGCCTTTGCCATGCACAGACCCAGGCTGAAACCAATCCAGAGCACTTCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| 3UTR TCA 72 bp | AAGATCTACCCTGTAGGGCTATCCAGAGTGGGCAAATaGCCACATGGTGCCCCTGCCGAGTACAATGATATG | + |
|
Preference number: 3 (lower is better) Translates to: KIYPVGLSRVGK*PHGAPAEYNDM Trigger: CATATCATTGTACTCGGCAGGGGCACCATGTGGTCATTTGCCCACTCTGGATAGCCCTACAGGGTAGATCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | CTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATGCGCCACAAACTGGACATGCCAGGGATTCCCATaGGATCCCATTCTCCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: LSGEPMTRGMQACATNWTCQGFP*DPILHW Trigger: CCAATGGAGAATGGGATCTCATGGGAATCCCTGGCA...TGTCCAGTTTGTGGCGCATGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | CTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATGCGCCACAAACTGGACATCCACATCCATGATCTaGAGGAGGCTCAGGGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LSGEPMTRGMQACATNWTSTSMI*RRLREK Trigger: CTTCTCCCTGAGCCTCCTGCAGATCATGGATGTGGA...TGTCCAGTTTGTGGCGCATGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | CTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATGCGCCACAAACTGGACAGTACCATGCATGAGGTaGTCATCATGTGTTGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSGEPMTRGMQACATNWTVPCMR*SSCVGE Trigger: CTCCCCAACACATGATGAGCACCTCATGCATGGTAC...TGTCCAGTTTGTGGCGCATGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | ATGGCAAAGGCAGACAGCCTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATGGTTACTGTGTAGGTaGCATCTGGGTATGGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: MAKADSLSGEPMTRGMQAWLLCR*HLGMAL Trigger: AAGAGCCATACCCAGATGTCACCTACACAGTAACCA...TGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAGGCTGTCTGCCTTTGCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | TACAGGGATACCTCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAGGGTGGCCCCGCACCTaGGCTCAGCTCCACACTGGC | + |
|
Preference number: 4 (lower is better) Translates to: YRDTSEFFHLSQCRVRTPGWPRT*AQLHTG Trigger: GCCAGTGTGGAGCTGAGCGCAGGTGCGGGGCCACCC...TGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGAGGTATCCCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | ACTTCCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATCTCTGGAACTCGCCTTaGAGGGACACGTGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TSFCKAAVEMDPVGSALDLWNSP*RDTCSS Trigger: GCTGCTGCACGTGTCCCTGCAAGGCGAGTTCCAGAG...ATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | ACTTCCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATCCCAGAGTCTGGAGTTaGGGCACAGTGCATGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: TSFCKAAVEMDPVGSALDPRVWS*GTVHAL Trigger: GAGGGCATGCACTGTGCCCCAACTCCAGACTCTGGG...ATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | GCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTGGTTTCAGCCACAAAGTTTGGGGCTaGCATGAGGATGCCGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: ARQLLKWIQWEVLWIGFSHKVWG*HEDADG Trigger: ACCATCGGCATCCTCATGTCAGCCCCAAACTTTGTG...GCTGAAACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | CTATCGGGTGAGCCCATGACAAGGGGCATGCAGGCATGCGCCACAAACTGGACATCTGGTTTCCAAATCTaGCCATCTGGAAAACGAACA | + |
|
Preference number: 4 (lower is better) Translates to: LSGEPMTRGMQACATNWTSGFQI*PSGKRT Trigger: TGTTCGTTTTCCAGATGGCCAGATTTGGAAACCAGA...TGTCCAGTTTGTGGCGCATGCCTGCATGCCCCTTGTCATGGGCTCACCCGATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | TCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCAGAGCAGGTTGCCATTaGTGGTGGGTGGCCCCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: SEFFHLSQCRVRTPILVLRAGCH*WWVAPH Trigger: GTGCGGGGCCACCCACCAGCAATGGCAACCTGCTCT...GAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | ACTTCCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTTGTACAGCCTCCTCTaGAACTCGCCTTGCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TSFCKAAVEMDPVGSALDLYSLL*NSPCRD Trigger: GTCCCTGCAAGGCGAGTTCCAGAGGAGGCTGTACAA...ATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | TTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCCAGATTGCAGGTTGCCATTGCTaGTGGGTGGCCCCGCACCTG | + |
|
Preference number: 4 (lower is better) Translates to: FFHLSQCRVRTPILVLQIAGCHC*WVAPHL Trigger: CAGGTGCGGGGCCACCCACCAGCAATGGCAACCTGC...AATCTGGAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAATGGAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | CCTGCCGAGTACAATGATATGCCGGTGATGGGTGTAAGAAAAGTAAACAGAAGCGCGGGTTGTAGTTCTTaGCCAGCTCCTTGTACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PAEYNDMPVMGVRKVNRSAGCSS*PAPCTA Trigger: GGCTGTACAAGGAGCTGGTCAAGAACTACAACCCGC...GCTTCTGTTTACTTTTCTTACACCCATCACCGGCATATCATTGTACTCGGCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | GCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTGGTTTCAGCCAGCCACAAGCAGCATaGAGACAGTCAGAGAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: ARQLLKWIQWEVLWIGFSQPQAA*RQSEKV Trigger: TACTTTCTCTGACTGTCTTCATGCTGCTTGTGGCTG...GCTGAAACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | CCTGCCGAGTACAATGATATGCCGGTGATGGGTGTAAGAAAAGTAAACAGAAGCCAGATGTTGCTGGCATaGTCTCAGCCACAAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PAEYNDMPVMGVRKVNRSQMLLA*SQPQAA Trigger: TGCTGCTTGTGGCTGAGATCATGCCAGCAACATCTG...GCTTCTGTTTACTTTTCTTACACCCATCACCGGCATATCATTGTACTCGGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | CCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTGGTTTTCTCTCCAGAGTCTaGAGGCAGCAAGAATACCAG | + |
|
Preference number: 4 (lower is better) Translates to: PFARQLLKWIQWEVLWIGFLSRV*RQQEYQ Trigger: CTGGTATTCTTGCTGCCTGCAGACTCTGGAGAGAAA...ACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | CAGGAAAATAAATCTCAAGACCGACAGCTACAGGGATACCTCAGAGTTCTTCCATGTAGCAGGAGCTCTTaGATATGCCTGGAGGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QENKSQDRQLQGYLRVLPCSRSS*ICLEGD Trigger: ATCTCCCTCCAGGCATATTCAAGAGCTCCTGCTACA...TGGAAGAACTCTGAGGTATCCCTGTAGCTGTCGGTCTTGAGATTTATTTTCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR TCA 90 bp | TACAGGGATACCTCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCACAGCAAAGCCAGGGCTaGAATGAGCACACAAGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: YRDTSEFFHLSQCRVRTPQQSQG*NEHTRN Trigger: ATTCCTTGTGTGCTCATTTCAGCCCTGGCTTTGCTG...TGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGAGGTATCCCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | CCAATTCTCGTCCTCCAGATTCTCTTCTTATCTGTGCATCTCCTACATGATAACCAAACTTCCACTCACTaGAGATCACCTCACTCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: PILVLQILFLSVHLLHDNQTSTH*RSPHSH Trigger: ATGAGAGTGAGGTGATCTGCAGTGAGTGGAAGTTTG...GTTATCATGTAGGAGATGCACAGATAAGAAGAGAATCTGGAGGACGAGAATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | CCTGCCGAGTACAATGATATGCCGGTGATGGGTGTAAGAAAAGTAAACAGAAGCTTGGTGGTTAAAACTTaGTTCTTCTCATCCACATCC | + |
|
Preference number: 4 (lower is better) Translates to: PAEYNDMPVMGVRKVNRSLVVKT*FFSSTS Trigger: GGATGTGGATGAGAAGAACCAAGTTTTAACCACCAA...GCTTCTGTTTACTTTTCTTACACCCATCACCGGCATATCATTGTACTCGGCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | GTTAAAGTAACCAGGAAAATAAATCTCAAGACCGACAGCTACAGGGATACCTCAACCAAGACGTTGGTGTaGAATGTGGCATCAAAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: VKVTRKINLKTDSYRDTSTKTLV*NVASKR Trigger: ACGCTTTGATGCCACATTCCACACCAACGTCTTGGT...TGAGGTATCCCTGTAGCTGTCGGTCTTGAGATTTATTTTCCTGGTTACTTTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | CCAATTCTCGTCCTCCAGATTCTCTTCTTATCTGTGCATCTCCTACATGATAACCATGCGCAGAAACCATaGACACCAATTCAGAAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: PILVLQILFLSVHLLHDNHAQKP*TPIQKN Trigger: ATTCTTCTGAATTGGTGTGCATGGTTTCTGCGCATG...GTTATCATGTAGGAGATGCACAGATAAGAAGAGAATCTGGAGGACGAGAATTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | TTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCCAGATTATAGAGGAGAATGTCTaGTTTCCAAATCTGGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: FFHLSQCRVRTPILVLQIIEENV*FPNLAI Trigger: GATGGCCAGATTTGGAAACCAGACATTCTCCTCTAT...AATCTGGAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAATGGAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | TCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCGTAGCCAAATGTTGGTaGTTAAAACTTGGTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SEFFHLSQCRVRTPILVLVAKCW*LKLGSS Trigger: AGAAGAACCAAGTTTTAACCACCAACATTTGGCTAC...GAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR GCA 90 bp | ATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCCAGATTCTCTTCTATCAAAGCGTTCATCTaGACTGTTATAGAGGAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: IYHNVELGPQFSSSRFSSIKAFI*TVIEEN Trigger: ATTCTCCTCTATAACAGTGCAGATGAACGCTTTGAT...AGAAGAGAATCTGGAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CCA 90 bp | TCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCTTTGTAGCCAAATGTTaGTGGTTAAAACTTGGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SEFFHLSQCRVRTPILVLFVAKC*WLKLGS Trigger: AGAACCAAGTTTTAACCACCAACATTTGGCTACAAA...GAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CAA 90 bp | CCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTGGTCCTCTGGAACTCGCCTaGCAGGGACACGTGCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: PFARQLLKWIQWEVLWIGPLELA*QGHVQQ Trigger: CTGCTGCACGTGTCCCTGCAAGGCGAGTTCCAGAGG...ACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CAA 90 bp | CCTTTTGCAAGGCAGCTGTTGAAATGGATCCAGTGGGAAGTGCTCTGGATTGGTTTCTTGACCAGCTCCTaGTACAGCCTCCTCTGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: PFARQLLKWIQWEVLWIGFLTSS*YSLLWN Trigger: GTTCCAGAGGAGGCTGTACAAGGAGCTGGTCAAGAA...ACCAATCCAGAGCACTTCCCACTGGATCCATTTCAACAGCTGCCTTGCAAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CAA 90 bp | TACAGGGATACCTCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCACCCCAGAGTCTGGAGTaGGGGCACAGTGCATGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: YRDTSEFFHLSQCRVRTPPQSLE*GHSACP Trigger: AGGGCATGCACTGTGCCCCAACTCCAGACTCTGGGG...TGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGAGGTATCCCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS CCA 90 bp | TGTGGCATCAAAGCGTTCATCTGCACTGTTATAGAGGAGAATGTCTaGTTTCCAAATCTGGCCATCTGGAAAACGAACATTTTTCACTCC | + |
|
Preference number: 5 (lower is better) Translates to: CGIKAFICTVIEENV*FPNLAIWKTNIFHS Trigger: GGAGTGAAAAATGTTCGTTTTCCAGATGGCCAGATTTGGAAACCAGACATTCTCCTCTATAACAGTGCAGATGAACGCTTTGATGCCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CAA 90 bp | CCAATTCTCGTCCTCCAGATTCTCTTCTTATCTGTGCATCTCCTACATGATAACAACTTCTCATTCCTTTaGCCAGGGATTCCCATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: PILVLQILFLSVHLLHDNNFSFL*PGIPMR Trigger: TCTCATGGGAATCCCTGGCAAAAGGAATGAGAAGTT...GTTATCATGTAGGAGATGCACAGATAAGAAGAGAATCTGGAGGACGAGAATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS-3UTR CAA 90 bp | TCAGAGTTCTTCCATTTATCACAATGTAGAGTTAGGACCCCAATTCTCGTCCTCATTTGTAGCCAAATGTaGGTGGTTAAAACTTGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SEFFHLSQCRVRTPILVLICSQM*VVKTWF Trigger: GAACCAAGTTTTAACCACCAACATTTGGCTACAAAT...GAGGACGAGAATTGGGGTCCTAACTCTACATTGTGATAAATGGAAGAACTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS GCA 72 bp | TGCAGGAGGCTCAGGGAGAAGTACACGGTGAGCGGCTaGGAGTCGTTGGCCACCGGCCTCTCCAGCGGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: CRRLREKYTVSG*ESLATGLSSGL Trigger: CAACCCGCTGGAGAGGCCGGTGGCCAACGACTCGCAGCCGCTCACCGTGTACTTCTCCCTGAGCCTCCTGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS CAA 72 bp | GACCAGCTCCTTGTACAGCCTCCTCTGGAACTCGCCTaGCAGGGACACGTGCAGCAGCGCCGCGGCCAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: DQLLVQPPLELA*QGHVQQRRGQS Trigger: GCTCTGGCCGCGGCGCTGCTGCACGTGTCCCTGCAAGGCGAGTTCCAGAGGAGGCTGTACAAGGAGCTGGTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS GCA 72 bp | CCAGGCCTCGGAAGCCAATGTAGAGCAGGTTGCCATTaGTGGTGGGTGGCCCCGCACCTGCGCTCAGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: PGLGSQCRAGCH*WWVAPHLRSAP Trigger: TGGAGCTGAGCGCAGGTGCGGGGCCACCCACCAGCAATGGCAACCTGCTCTACATTGGCTTCCGAGGCCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS GCA 72 bp | TGCCCTCCAGGCCTCGGAAGCCAATGTAGAGCAGGTTaGCATTGCTGGTGGGTGGCCCCGCACCTGCGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: CPPGLGSQCRAG*HCWWVAPHLRS Trigger: TGAGCGCAGGTGCGGGGCCACCCACCAGCAATGGCAACCTGCTCTACATTGGCTTCCGAGGCCTGGAGGGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS CCA 72 bp | GGCCTCGGAAGCCAATGTAGAGCAGGTTGCCATTGCTaGTGGGTGGCCCCGCACCTGCGCTCAGCTCCACAC | + |
|
Preference number: 6 (lower is better) Translates to: GLGSQCRAGCHC*WVAPHLRSAPH Trigger: GTGTGGAGCTGAGCGCAGGTGCGGGGCCACCCACCAGCAATGGCAACCTGCTCTACATTGGCTTCCGAGGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS CAA 90 bp | GTAGTTCTTGACCAGCTCCTTGTACAGCCTCCTCTGGAACTCGCCTaGCAGGGACACGTGCAGCAGCGCCGCGGCCAGAGCCAGCCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: VVLDQLLVQPPLELA*QGHVQQRRGQSQPD Trigger: ATCTGGCTGGCTCTGGCCGCGGCGCTGCTGCACGTGTCCCTGCAAGGCGAGTTCCAGAGGAGGCTGTACAAGGAGCTGGTCAAGAACTAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||
| CDS CCA 72 bp | AAAGCGTTCATCTGCACTGTTATAGAGGAGAATGTCTaGTTTCCAAATCTGGCCATCTGGAAAACGAACATT | + |
|
Preference number: 6 (lower is better) Translates to: KAFICTVIEENV*FPNLAIWKTNI Trigger: AATGTTCGTTTTCCAGATGGCCAGATTTGGAAACCAGACATTCTCCTCTATAACAGTGCAGATGAACGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032738.7 |
||