Pregenerated sensors for CHRNA6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031491Ensembl transcript IDs: ENSMUST00000033882.10
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGGAGTCTGTGTACTTaGCTTTTTCTTGTGGGGACT | + |
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Preference number: 2 (lower is better) Translates to: STGASQMSCQDNTAVVWIRSLCT*LFLVGT Trigger: AGTCCCCACAAGAAAAAGCCAAGTACACAGACTCCT...GATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR-3UTR CCA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTAACTCCCTTCTTGTCTTaGTTTAGGAGTCTGTGTACT | + |
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Preference number: 2 (lower is better) Translates to: DSSTLSGGSGASRMEGLVTPFLS*FRSLCT Trigger: AGTACACAGACTCCTAAACCAAGACAAGAAGGGAGT...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR TCA 72 bp | GCTTCGGATACAAGCCAATCACCTTTCAGAGTGGACTaGCTCTTGACTATGGGGCCTAGCTCTACGAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: ASDTSQSPFRVD*LLTMGPSSTRD Trigger: GTCCCTCGTAGAGCTAGGCCCCATAGTCAAGAGTCAGTCCACTCTGAAAGGTGATTGGCTTGTATCCGAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR CCA 72 bp | GAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTaGTTTGGATCAGCCCCAAGGACAAGTGTTAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: EPAKCPARTILL*FGSAPRTSVRD Trigger: GTCTCTAACACTTGTCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR-3UTR CAA 90 bp | GCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTCCCGAGTTATGCCCACTCCCTTCTaGTCTTGGTTTAGGAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: AQESSRQVCCKCQQRSRVMPTPF*SWFRSL Trigger: CAGACTCCTAAACCAAGACAAGAAGGGAGTGGGCAT...AACTCGGGAGCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR CCA 72 bp | CCTAAGGCTGCAGCAATGCCCACTCCCTTCTTGTCTTaGTTTAGGAGTCTGTGTACTTGGCTTTTTCTTGTG | + |
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Preference number: 3 (lower is better) Translates to: PKAAAMPTPFLS*FRSLCTWLFLV Trigger: CACAAGAAAAAGCCAAGTACACAGACTCCTAAACCAAGACAAGAAGGGAGTGGGCATTGCTGCAGCCTTAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR-3UTR CAA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTATATCTGCTTTCTTCTTaGACCATTGCACATGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: DSSTLSGGSGASRMEGLVYLLSS*TIAHVR Trigger: TCTGACATGTGCAATGGTCAAAGAAGAAAGCAGATA...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | GCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTCCCGAGTTATCGAGGGGAAGGCCTaGAGGAAGATGGTCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: AQESSRQVCCKCQQRSRVIEGKA*RKMVFT Trigger: GGTGAAGACCATCTTCCTTCAGGCCTTCCCCTCGAT...AACTCGGGAGCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | CAGGGACATGCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCCCTTGGCAGGCCTCTTaGTATGGCTTTTGGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QGHAQESSRQVCCKCQQRPWQAS*YGFWGP Trigger: AGGACCCCAAAAGCCATACCAAGAGGCCTGCCAAGG...GCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGCATGTCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | GTATTCAGGCTCCTAAGGCTGCAGCAATGCCCACTCCCTTCTTGTCTTGGTTTAATCGGACGAGTGCTCTaGATTCTCTGCCACCCACCG | + |
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Preference number: 4 (lower is better) Translates to: VFRLLRLQQCPLPSCLGLIGRVL*ILCHPP Trigger: CGGTGGGTGGCAGAGAATTCAGAGCACTCGTCCGAT...TAAACCAAGACAAGAAGGGAGTGGGCATTGCTGCAGCCTTAGGAGCCTGAATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | GTATTCAGGCTCCTAAGGCTGCAGCAATGCCCACTCCCTTCTTGTCTTGGTTTATGCAGGCTGCTGGCTTaGTCTTCTCTTTCCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VFRLLRLQQCPLPSCLGLCRLLA*SSLSRC Trigger: GCACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCA...TAAACCAAGACAAGAAGGGAGTGGGCATTGCTGCAGCCTTAGGAGCCTGAATAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | CAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGATCACACCGTCATACTTaGGAAGAGCTTTGGTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: QPNVLPGQYCCGLDQPQGSHRHT*EELWSC Trigger: GCAAGACCAAAGCTCTTCTCAAGTATGACGGTGTGA...TCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | GCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTCCCGAGTTCCAGCAAAAAGACAGTaGGAGAAAGCAGAACGGAGA | + |
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Preference number: 4 (lower is better) Translates to: AQESSRQVCCKCQQRSRVPAKRQ*EKAERR Trigger: TCTCCGTTCTGCTTTCTCTCACTGTCTTTTTGCTGG...AACTCGGGAGCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | GCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTCCCGAGTTCACGAGAGATGTGGATaGGATGGTCTCTGTAATCAC | + |
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Preference number: 4 (lower is better) Translates to: AQESSRQVCCKCQQRSRVHERCG*DGLCNH Trigger: GTGATTACAGAGACCATCCCATCCACATCTCTCGTG...AACTCGGGAGCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | GTATTCAGGCTCCTAAGGCTGCAGCAATGCCCACTCCCTTCTTGTCTTGGTTTATGGTCTTCACCCACTTaGGCATGGTATGCGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VFRLLRLQQCPLPSCLGLWSSPT*AWYALL Trigger: CAGCAACGCATACCATGCCCAAGTGGGTGAAGACCA...TAAACCAAGACAAGAAGGGAGTGGGCATTGCTGCAGCCTTAGGAGCCTGAATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | CAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGACACAGCAGTTGTACTTaGTGTCATGCTTATAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: QPNVLPGQYCCGLDQPQGHSSCT*CHAYSQ Trigger: CTGGCTATAAGCATGACATCAAGTACAACTGCTGTG...TCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | CAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGACAAGAGGTGCTATGTCACTTaGTTTTTGGCAGTGGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: QMSCQDNTAVVWISPKDKRCYVT*FLAVVA Trigger: TGCCACCACTGCCAAAAATCAAGTGACATAGCACCT...CTTGTCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | CCCCAAGGACAAGTGTTAGAGACTGATTCCTCCACGCTATCAGGAGGTAGTGGAGGCCAGTTGCGTGATTaGCAATTCAAAATGCACCGT | + |
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Preference number: 4 (lower is better) Translates to: PQGQVLETDSSTLSGGSGGQLRD*QFKMHR Trigger: ACGGTGCATTTTGAATTGGCAATCACGCAACTGGCC...TCCACTACCTCCTGATAGCGTGGAGGAATCAGTCTCTAACACTTGTCCTTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTAATACTCACCCACCAGTaGGATCACGAGAGATGTGGA | + |
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Preference number: 4 (lower is better) Translates to: DSSTLSGGSGASRMEGLVILTHQ*DHERCG Trigger: TCCACATCTCTCGTGATCCCACTGGTGGGTGAGTAT...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR CAA 72 bp | CAGGCTCCTAAGGCTGCAGCAATGCCCACTCCCTTCTaGTCTTGGTTTAGGAGTCTGTGTACTTGGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QAPKAAAMPTPF*SWFRSLCTWLF Trigger: AAAAAGCCAAGTACACAGACTCCTAAACCAAGACAAGAAGGGAGTGGGCATTGCTGCAGCCTTAGGAGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR CAA 72 bp | CAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTaGGATCAGCCCCAAGGACAAGTGTTAGAGACTGAT | + |
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Preference number: 4 (lower is better) Translates to: QPNVLPGQYCCG*DQPQGQVLETD Trigger: ATCAGTCTCTAACACTTGTCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTAACATGGGCAACCTCCTaGTGTAGAAGGAGTAGGTTA | + |
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Preference number: 4 (lower is better) Translates to: DSSTLSGGSGASRMEGLVTWATS*CRRSRL Trigger: TAACCTACTCCTTCTACATCAGGAGGTTGCCCATGT...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | CAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGATTGGATTCTCCTCGATaGGTAAATTTGACCTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: QPNVLPGQYCCGLDQPQGLDSPR*VNLTLA Trigger: TGCCAAGGTCAAATTTACTCATCGAGGAGAATCCAA...TCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | GCGCTCCCGAGTTTCTTGATAACCATACACATCACTTGCAATAACCAGCAGGAGAGCCTGTGGAAGAGCTaGTCTTCAGATTCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: ALPSFLITIHITCNNQQESLWKS*SSDSQP Trigger: AGGCTGTGAATCTGAAGAGCAGCTCTTCCACAGGCT...CTCCTGCTGGTTATTGCAAGTGATGTGTATGGTTATCAAGAAACTCGGGAGCGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | CTAGCACAGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTCCACATTGGCCAGTTaGGTGATTGCCAATTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LAQYWSQPNVLPGQYCCGSTLAS*VIANSK Trigger: TTTTGAATTGGCAATCACGCAACTGGCCAATGTGGA...ACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACTGTGCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | TCAGCAGCGCTCCCGAGTTTCTTGATAACCATACACATCACTTGCAATAACCAGACCCACCGTGCAGGCTaGTGGCTTGATCTTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SAALPSFLITIHITCNNQTHRAG*WLDLLF Trigger: AAAGAGAAGATCAAGCCAGCAGCCTGCACGGTGGGT...CTGGTTATTGCAAGTGATGTGTATGGTTATCAAGAAACTCGGGAGCGCTGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | TGTGAGCTACATCACAGGGACATGCACAAGAAAGTAGCAGACAGGTGTGTTGCATTCCCAAGCAGTGGCTaGAGAAATAGCCCCACAGTT | + |
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Preference number: 4 (lower is better) Translates to: CELHHRDMHKKVADRCVAFPSSG*RNSPTV Trigger: AACTGTGGGGCTATTTCTGCAGCCACTGCTTGGGAA...TGCAACACACCTGTCTGCTACTTTCTTGTGCATGTCCCTGTGATGTAGCTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | AGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCGAAGGTGATGTCCATTaGGCAGGAGCTCTTAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: STGASQMSCQDNTAVVWIEGDVH*AGALKD Trigger: ATCTTTAAGAGCTCCTGCCCAATGGACATCACCTTC...GATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | TCAGCAGCGCTCCCGAGTTTCTTGATAACCATACACATCACTTGCAATAACCAGGTCCTTAACACCTCCTaGCTCCTTTGTCTTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SAALPSFLITIHITCNNQVLNTS*LLCLVQ Trigger: CTGGACAAGACAAAGGAGGCAGGAGGTGTTAAGGAC...CTGGTTATTGCAAGTGATGTGTATGGTTATCAAGAAACTCGGGAGCGCTGCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | CAGGGACATGCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTTGGTCTCCATAATCTaGTTGACTTCATCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: QGHAQESSRQVCCKCQQRLVSII*LTSSTL Trigger: CAATGTGGATGAAGTCAACCAGATTATGGAGACCAA...GCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGCATGTCCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | CCTCTACTACCTGATCCTGTGGCTCTTTGCATATACGGCTTTTCTAAAAGGCTGCTTAAAGATGGCTGGTaGGGTCCAGGTTATCACACC | + |
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Preference number: 4 (lower is better) Translates to: PLLPDPVALCIYGFSKRLLKDGW*GPGYHT Trigger: GGTGTGATAACCTGGACCCCACCAGCCATCTTTAAG...CAGCCTTTTAGAAAAGCCGTATATGCAAAGAGCCACAGGATCAGGTAGTAGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | TCAGCAGCGCTCCCGAGTTTCTTGATAACCATACACATCACTTGCAATAACCAGGCTCTTAAAGATGGCTaGTGGGGTCCAGGTTATCAC | + |
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Preference number: 4 (lower is better) Translates to: SAALPSFLITIHITCNNQALKDG*WGPGYH Trigger: GTGATAACCTGGACCCCACCAGCCATCTTTAAGAGC...CTGGTTATTGCAAGTGATGTGTATGGTTATCAAGAAACTCGGGAGCGCTGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | CTAGCACAGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTTTCTGCTATGAATTaGACACTCTCGATGACATCT | + |
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Preference number: 4 (lower is better) Translates to: LAQYWSQPNVLPGQYCCGFSAMN*TLSMTS Trigger: AGATGTCATCGAGAGTGTTCAATTCATAGCAGAAAA...ACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACTGTGCTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | TGTGAGCTACATCACAGGGACATGCACAAGAAAGTAGCAGACAGGTGTGTTGCAAAAGCAGAACGGAGATaGAAAGAGTCACTTTCTCGC | + |
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Preference number: 4 (lower is better) Translates to: CELHHRDMHKKVADRCVAKAERR*KESLSR Trigger: GCGAGAAAGTGACTCTTTGCATCTCCGTTCTGCTTT...TGCAACACACCTGTCTGCTACTTTCTTGTGCATGTCCCTGTGATGTAGCTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR TCA 90 bp | CACGAATTGAATAGTCTGCTAAGAGAGATGCTATCTGCTTTCTTCTTTGACCATCAAACGGGAAGAAGGTaGTGTCCATTGGGCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: HELNSLLREMLSAFFFDHQTGRR*CPLGRS Trigger: GCTCCTGCCCAATGGACATCACCTTCTTCCCGTTTG...ATGGTCAAAGAAGAAAGCAGATAGCATCTCTCTTAGCAGACTATTCAATTCGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | TCAGCAGCGCTCCCGAGTTTCTTGATAACCATACACATCACTTGCAATAACCAGGAGAAGGTCGATTTCTaGCTTGTCATAAGTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SAALPSFLITIHITCNNQEKVDF*LVISPG Trigger: TCCTGGACTTATGACAAGGCAGAAATCGACCTTCTC...CTGGTTATTGCAAGTGATGTGTATGGTTATCAAGAAACTCGGGAGCGCTGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | AGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCGCTCTTCATGTTTTCTaGTATGAATTGAACACTCTC | + |
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Preference number: 4 (lower is better) Translates to: STGASQMSCQDNTAVVWIALHVF*YELNTL Trigger: GAGAGTGTTCAATTCATAGCAGAAAACATGAAGAGC...GATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR GCA 90 bp | CACGAATTGAATAGTCTGCTAAGAGAGATGCTATCTGCTTTCTTCTTTGACCATTCAACATCGGACGAGTaGTCTGAATTCTCTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: HELNSLLREMLSAFFFDHSTSDE*SEFSAT Trigger: GGTGGCAGAGAATTCAGAGCACTCGTCCGATGTTGA...ATGGTCAAAGAAGAAAGCAGATAGCATCTCTCTTAGCAGACTATTCAATTCGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | CACGAATTGAATAGTCTGCTAAGAGAGATGCTATCTGCTTTCTTCTTTGACCATGCAGGCCTCTTGGTATaGCTTTTGGGGTCCTTAACA | + |
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Preference number: 4 (lower is better) Translates to: HELNSLLREMLSAFFFDHAGLLV*LLGSLT Trigger: TGTTAAGGACCCCAAAAGCCATACCAAGAGGCCTGC...ATGGTCAAAGAAGAAAGCAGATAGCATCTCTCTTAGCAGACTATTCAATTCGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | CCTCTACTACCTGATCCTGTGGCTCTTTGCATATACGGCTTTTCTAAAAGGCTGTCGTTTGTTTCATTGTaGCTCTTCATGTTTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PLLPDPVALCIYGFSKRLSFVSL*LFMFSA Trigger: AGCAGAAAACATGAAGAGCCACAATGAAACAAACGA...CAGCCTTTTAGAAAAGCCGTATATGCAAAGAGCCACAGGATCAGGTAGTAGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| 3UTR CAA 72 bp | CTCTTGACTATGGGGCCTAGCTCTACGAGGGACCATTaGTGTTTCTTGAAACAAAGAATGCAAATTATAGAG | + |
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Preference number: 4 (lower is better) Translates to: LLTMGPSSTRDH*CFLKQRMQIIE Trigger: CTCTATAATTTGCATTCTTTGTTTCAAGAAACACAAATGGTCCCTCGTAGAGCTAGGCCCCATAGTCAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CCA 90 bp | CACGAATTGAATAGTCTGCTAAGAGAGATGCTATCTGCTTTCTTCTTTGACCATATGTCACTTGATTTTTaGCAGTGGTGGCATTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: HELNSLLREMLSAFFFDHMSLDF*QWWHSF Trigger: AAAGGAATGCCACCACTGCCAAAAATCAAGTGACAT...ATGGTCAAAGAAGAAAGCAGATAGCATCTCTCTTAGCAGACTATTCAATTCGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 90 bp | GAGGTTTCCTCATCATCAGAATCGAGGGGAAGGCCTGAAGGAAGATaGTCTTCACCCACTTGGGCATGGTATGCGTTGCTGGGGTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: EVSSSSESRGRPEGR*SSPTWAWYALLGSC Trigger: ACAGGACCCCAGCAACGCATACCATGCCCAAGTGGGTGAAGACCATCTTCCTTCAGGCCTTCCCCTCGATTCTGATGATGAGGAAACCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | GCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTCCCGAGTTCACCTCCTGCCTCCTTaGTCTTGTCCAGAGGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: AQESSRQVCCKCQQRSRVHLLPP*SCPEVS Trigger: GGAAACCTCTGGACAAGACAAAGGAGGCAGGAGGTG...AACTCGGGAGCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | AGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCACCTTGGCAGGCCTCTaGGTATGGCTTTTGGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: STGASQMSCQDNTAVVWITLAGL*VWLLGS Trigger: GGACCCCAAAAGCCATACCAAGAGGCCTGCCAAGGT...GATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS TCA 90 bp | GTCTTGTCCAGAGGTTTCCTCATCATCAGAATCGAGGGGAAGGCCTaGAGGAAGATGGTCTTCACCCACTTGGGCATGGTATGCGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: VLSRGFLIIRIEGKA*RKMVFTHLGMVCVA Trigger: AGCAACGCATACCATGCCCAAGTGGGTGAAGACCATCTTCCTTCAGGCCTTCCCCTCGATTCTGATGATGAGGAAACCTCTGGACAAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 90 bp | GTTGTCTGCTGGAACTCGAAGTGTCTCGATGCCATCATACTCCGTTaGATCCCAACGCAATCTGTAGTCCTTCCAGATGTGACGCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VVCWNSKCLDAIILR*IPTQSVVLPDVTQP Trigger: TGGCTGCGTCACATCTGGAAGGACTACAGATTGCGTTGGGATCCAACGGAGTATGATGGCATCGAGACACTTCGAGTTCCAGCAGACAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 90 bp | TCGGACGAGTGCTCTGAATTCTCTGCCACCCACCGTGCAGGCTGCTaGCTTGATCTTCTCTTTCCAGGTGCTATGTCACTTGATTTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SDECSEFSATHRAGC*LDLLFPGAMSLDFW Trigger: CCAAAAATCAAGTGACATAGCACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCACGGTGGGTGGCAGAGAATTCAGAGCACTCGTCCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | GCACAAGAAAGTAGCAGACAGGTGTGTTGCAAGTGTCAGCAGCGCTCCCGAGTTTACTTGAGAAGAGCTTaGGTCTTGCCTTCGACCTGG | + |
|
Preference number: 5 (lower is better) Translates to: AQESSRQVCCKCQQRSRVYLRRA*VLPSTW Trigger: CCAGGTCGAAGGCAAGACCAAAGCTCTTCTCAAGTA...AACTCGGGAGCGCTGCTGACACTTGCAACACACCTGTCTGCTACTTTCTTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 90 bp | CTTGGCAGGCCTCTTGGTATGGCTTTTGGGGTCCTTAACACCTCCTaGCTCCTTTGTCTTGTCCAGAGGTTTCCTCATCATCAGAATCGA | + |
|
Preference number: 5 (lower is better) Translates to: LGRPLGMAFGVLNTS*LLCLVQRFPHHQNR Trigger: TCGATTCTGATGATGAGGAAACCTCTGGACAAGACAAAGGAGGCAGGAGGTGTTAAGGACCCCAAAAGCCATACCAAGAGGCCTGCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 90 bp | ACATCGGACGAGTGCTCTGAATTCTCTGCCACCCACCGTGCAGGCTaGTGGCTTGATCTTCTCTTTCCAGGTGCTATGTCACTTGATTTT | + |
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Preference number: 5 (lower is better) Translates to: TSDECSEFSATHRAG*WLDLLFPGAMSLDF Trigger: AAAATCAAGTGACATAGCACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCACGGTGGGTGGCAGAGAATTCAGAGCACTCGTCCGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CTAGCACAGTACTGGAGCCAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTGTCTCCATAATCTGGTaGACTTCATCCACATTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LAQYWSQPNVLPGQYCCGVSIIW*TSSTLA Trigger: GGCCAATGTGGATGAAGTCAACCAGATTATGGAGAC...ACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTGGCTCCAGTACTGTGCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGACAAGTCAGGCTTCCAGATGTaGTCTGCTGGAACTCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: QMSCQDNTAVVWISPKDKSGFQM*SAGTRS Trigger: ACTTCGAGTTCCAGCAGACAACATCTGGAAGCCTGA...CTTGTCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTAAGAAGAGCTTTGGTCTaGCCTTCGACCTGGAAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: DSSTLSGGSGASRMEGLVRRALV*PSTWKS Trigger: CGACTTCCAGGTCGAAGGCAAGACCAAAGCTCTTCT...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGACAAGCAGGTGCTATGTCACTaGATTTTTGGCAGTGGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: QMSCQDNTAVVWISPKDKQVLCH*IFGSGG Trigger: GCCACCACTGCCAAAAATCAAGTGACATAGCACCTG...CTTGTCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | GCGCTCCCGAGTTTCTTGATAACCATACACATCACTTGCAATAACCAGCAGGAGGTGCAGGCTGCTGGCTaGATCTTCTCTTTCCAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: ALPSFLITIHITCNNQQEVQAAG*IFSFQV Trigger: CACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCAC...CTCCTGCTGGTTATTGCAAGTGATGTGTATGGTTATCAAGAAACTCGGGAGCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CAGCCAAATGTCCTGCCAGGACAATACTGCTGTGGTTTGGATCAGCCCCAAGGAATCACACCGTCATACTaGAGAAGAGCTTTGGTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: QPNVLPGQYCCGLDQPQGITPSY*RRALVL Trigger: CAAGACCAAAGCTCTTCTCAAGTATGACGGTGTGAT...TCCTTGGGGCTGATCCAAACCACAGCAGTATTGTCCTGGCAGGACATTTGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CCTCTACTACCTGATCCTGTGGCTCTTTGCATATACGGCTTTTCTAAAAGGCTGCCTGCCTCCTTTGTCTaGTCCAGAGGTTTCCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: PLLPDPVALCIYGFSKRLPASFV*SRGFLI Trigger: GATGAGGAAACCTCTGGACAAGACAAAGGAGGCAGG...CAGCCTTTTAGAAAAGCCGTATATGCAAAGAGCCACAGGATCAGGTAGTAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 90 bp | AGATTGGTCTCCATAATCTGGTTGACTTCATCCACATTGGCCAGTTaGGTGATTGCCAATTCAAAATGCACCGTGACGGGATCGGAGACA | + |
|
Preference number: 5 (lower is better) Translates to: RLVSIIWLTSSTLAS*VIANSKCTVTGSET Trigger: TGTCTCCGATCCCGTCACGGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTGGATGAAGTCAACCAGATTATGGAGACCAATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTAATCCACATTGGCCAGTaGCGTGATTGCCAATTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: DSSTLSGGSGASRMEGLVIHIGQ*RDCQFK Trigger: TTTGAATTGGCAATCACGCAACTGGCCAATGTGGAT...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS TCA 90 bp | TTTTGGCAGTGGTGGCATTCCTTTAGAAGTTTGGATTCTCCTCGATaGGTAAATTTGACCTTGGCAGGCCTCTTGGTATGGCTTTTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: FWQWWHSFRSLDSPR*VNLTLAGLLVWLLG Trigger: CCCCAAAAGCCATACCAAGAGGCCTGCCAAGGTCAAATTTACTCATCGAGGAGAATCCAAACTTCTAAAGGAATGCCACCACTGCCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | GATTCCTCCACGCTATCAGGAGGTAGTGGAGCTTCTAGGATGGAAGGTCTTGTAGTTTTCTGCTATGAATaGAACACTCTCGATGACATC | + |
|
Preference number: 5 (lower is better) Translates to: DSSTLSGGSGASRMEGLVVFCYE*NTLDDI Trigger: GATGTCATCGAGAGTGTTCAATTCATAGCAGAAAAC...TACAAGACCTTCCATCCTAGAAGCTCCACTACCTCCTGATAGCGTGGAGGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CCTCTACTACCTGATCCTGTGGCTCTTTGCATATACGGCTTTTCTAAAAGGCTGCGTCTTCTACCTCGTTaGTTTCATTGTGGCTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: PLLPDPVALCIYGFSKRLRLLPR*FHCGSS Trigger: TGAAGAGCCACAATGAAACAAACGAGGTAGAAGACG...CAGCCTTTTAGAAAAGCCGTATATGCAAAGAGCCACAGGATCAGGTAGTAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS-3UTR CAA 90 bp | CACGAATTGAATAGTCTGCTAAGAGAGATGCTATCTGCTTTCTTCTTTGACCATATGGTCTTCACCCACTaGGGCATGGTATGCGTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: HELNSLLREMLSAFFFDHMVFTH*GMVCVA Trigger: AGCAACGCATACCATGCCCAAGTGGGTGAAGACCAT...ATGGTCAAAGAAGAAAGCAGATAGCATCTCTCTTAGCAGACTATTCAATTCGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS TCA 90 bp | ACCTCGTTTGTTTCATTGTGGCTCTTCATGTTTTCTGCTATGAATTaGACACTCTCGATGACATCTTCAACATCGGACGAGTGCTCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: TSFVSLWLFMFSAMN*TLSMTSSTSDECSE Trigger: TTCAGAGCACTCGTCCGATGTTGAAGATGTCATCGAGAGTGTTCAATTCATAGCAGAAAACATGAAGAGCCACAATGAAACAAACGAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 90 bp | GTCGTCTTCTACCTCGTTTGTTTCATTGTGGCTCTTCATGTTTTCTaGTATGAATTGAACACTCTCGATGACATCTTCAACATCGGACGA | + |
|
Preference number: 5 (lower is better) Translates to: VVFYLVCFIVALHVF*YELNTLDDIFNIGR Trigger: TCGTCCGATGTTGAAGATGTCATCGAGAGTGTTCAATTCATAGCAGAAAACATGAAGAGCCACAATGAAACAAACGAGGTAGAAGACGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | AGGGGAAGGCCTGAAGGAAGATGGTCTTCACCCACTTaGGCATGGTATGCGTTGCTGGGGTCCTGTAGTGTA | + |
|
Preference number: 6 (lower is better) Translates to: RGRPEGRWSSPT*AWYALLGSCSV Trigger: TACACTACAGGACCCCAGCAACGCATACCATGCCCAAGTGGGTGAAGACCATCTTCCTTCAGGCCTTCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 72 bp | TCCACATTGGCCAGTTGCGTGATTGCCAATTCAAAATaGACCGTGACGGGATCGGAGACATTCTCCACCGGC | + |
|
Preference number: 6 (lower is better) Translates to: STLASCVIANSK*TVTGSETFSTG Trigger: GCCGGTGGAGAATGTCTCCGATCCCGTCACGGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | TCATCATCAGAATCGAGGGGAAGGCCTGAAGGAAGATaGTCTTCACCCACTTGGGCATGGTATGCGTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: SSSESRGRPEGR*SSPTWAWYALL Trigger: CAGCAACGCATACCATGCCCAAGTGGGTGAAGACCATCTTCCTTCAGGCCTTCCCCTCGATTCTGATGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | TGCTCTGAATTCTCTGCCACCCACCGTGCAGGCTGCTaGCTTGATCTTCTCTTTCCAGGTGCTATGTCACTT | + |
|
Preference number: 6 (lower is better) Translates to: CSEFSATHRAGC*LDLLFPGAMSL Trigger: AAGTGACATAGCACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCACGGTGGGTGGCAGAGAATTCAGAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | GTCCAGGTTATCACACCGTCATACTTGAGAAGAGCTTaGGTCTTGCCTTCGACCTGGAAGTCGCCGACAGCA | + |
|
Preference number: 6 (lower is better) Translates to: VQVITPSYLRRA*VLPSTWKSPTA Trigger: TGCTGTCGGCGACTTCCAGGTCGAAGGCAAGACCAAAGCTCTTCTCAAGTATGACGGTGTGATAACCTGGAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 90 bp | TGTTGTCTGCTGGAACTCGAAGTGTCTCGATGCCATCATACTCCGTaGGATCCCAACGCAATCTGTAGTCCTTCCAGATGTGACGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CCLLELEVSRCHHTP*DPNAICSPSRCDAA Trigger: GGCTGCGTCACATCTGGAAGGACTACAGATTGCGTTGGGATCCAACGGAGTATGATGGCATCGAGACACTTCGAGTTCCAGCAGACAACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 90 bp | GCTGGTGGGGTCCAGGTTATCACACCGTCATACTTGAGAAGAGCTTaGGTCTTGCCTTCGACCTGGAAGTCGCCGACAGCATTGTTATAC | + |
|
Preference number: 6 (lower is better) Translates to: AGGVQVITPSYLRRA*VLPSTWKSPTALLY Trigger: GTATAACAATGCTGTCGGCGACTTCCAGGTCGAAGGCAAGACCAAAGCTCTTCTCAAGTATGACGGTGTGATAACCTGGACCCCACCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 90 bp | GGGGTCCAGGTTATCACACCGTCATACTTGAGAAGAGCTTTGGTCTaGCCTTCGACCTGGAAGTCGCCGACAGCATTGTTATACAGAACG | + |
|
Preference number: 6 (lower is better) Translates to: GVQVITPSYLRRALV*PSTWKSPTALLYRT Trigger: CGTTCTGTATAACAATGCTGTCGGCGACTTCCAGGTCGAAGGCAAGACCAAAGCTCTTCTCAAGTATGACGGTGTGATAACCTGGACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 90 bp | ACGAGTGCTCTGAATTCTCTGCCACCCACCGTGCAGGCTGCTGGCTaGATCTTCTCTTTCCAGGTGCTATGTCACTTGATTTTTGGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: TSALNSLPPTVQAAG*IFSFQVLCHLIFGS Trigger: ACTGCCAAAAATCAAGTGACATAGCACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCACGGTGGGTGGCAGAGAATTCAGAGCACTCGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS TCA 72 bp | AGAGGTTTCCTCATCATCAGAATCGAGGGGAAGGCCTaGAGGAAGATGGTCTTCACCCACTTGGGCATGGTA | + |
|
Preference number: 6 (lower is better) Translates to: RGFLIIRIEGKA*RKMVFTHLGMV Trigger: TACCATGCCCAAGTGGGTGAAGACCATCTTCCTTCAGGCCTTCCCCTCGATTCTGATGATGAGGAAACCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | CTTTTGGGGTCCTTAACACCTCCTGCCTCCTTTGTCTaGTCCAGAGGTTTCCTCATCATCAGAATCGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: LLGSLTPPASFV*SRGFLIIRIEG Trigger: CCCCTCGATTCTGATGATGAGGAAACCTCTGGACAAGACAAAGGAGGCAGGAGGTGTTAAGGACCCCAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | CTGAATTCTCTGCCACCCACCGTGCAGGCTGCTGGCTaGATCTTCTCTTTCCAGGTGCTATGTCACTTGATT | + |
|
Preference number: 6 (lower is better) Translates to: LNSLPPTVQAAG*IFSFQVLCHLI Trigger: AATCAAGTGACATAGCACCTGGAAAGAGAAGATCAAGCCAGCAGCCTGCACGGTGGGTGGCAGAGAATTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 90 bp | CGCAGCCACAGATTGGTCTCCATAATCTGGTTGACTTCATCCACATaGGCCAGTTGCGTGATTGCCAATTCAAAATGCACCGTGACGGGA | + |
|
Preference number: 6 (lower is better) Translates to: RSHRLVSIIWLTSST*ASCVIANSKCTVTG Trigger: TCCCGTCACGGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTGGATGAAGTCAACCAGATTATGGAGACCAATCTGTGGCTGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 72 bp | TCCAGATGTTGTCTGCTGGAACTCGAAGTGTCTCGATaGCATCATACTCCGTTGGATCCCAACGCAATCTGT | + |
|
Preference number: 6 (lower is better) Translates to: SRCCLLELEVSR*HHTPLDPNAIC Trigger: ACAGATTGCGTTGGGATCCAACGGAGTATGATGGCATCGAGACACTTCGAGTTCCAGCAGACAACATCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | TGGAACTCGAAGTGTCTCGATGCCATCATACTCCGTTaGATCCCAACGCAATCTGTAGTCCTTCCAGATGTG | + |
|
Preference number: 6 (lower is better) Translates to: WNSKCLDAIILR*IPTQSVVLPDV Trigger: CACATCTGGAAGGACTACAGATTGCGTTGGGATCCAACGGAGTATGATGGCATCGAGACACTTCGAGTTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | CTGGAACTCGAAGTGTCTCGATGCCATCATACTCCGTaGGATCCCAACGCAATCTGTAGTCCTTCCAGATGT | + |
|
Preference number: 6 (lower is better) Translates to: LELEVSRCHHTP*DPNAICSPSRC Trigger: ACATCTGGAAGGACTACAGATTGCGTTGGGATCCAACGGAGTATGATGGCATCGAGACACTTCGAGTTCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | TTGGTCTTGCCTTCGACCTGGAAGTCGCCGACAGCATaGTTATACAGAACGATGTCAGGCTTCCAGATGTTG | + |
|
Preference number: 6 (lower is better) Translates to: LVLPSTWKSPTA*LYRTMSGFQML Trigger: CAACATCTGGAAGCCTGACATCGTTCTGTATAACAATGCTGTCGGCGACTTCCAGGTCGAAGGCAAGACCAA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | GTAAATTTGACCTTGGCAGGCCTCTTGGTATGGCTTTaGGGGTCCTTAACACCTCCTGCCTCCTTTGTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: VNLTLAGLLVWL*GSLTPPASFVL Trigger: CAAGACAAAGGAGGCAGGAGGTGTTAAGGACCCCAAAAGCCATACCAAGAGGCCTGCCAAGGTCAAATTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 90 bp | CAGATTGGTCTCCATAATCTGGTTGACTTCATCCACATTGGCCAGTaGCGTGATTGCCAATTCAAAATGCACCGTGACGGGATCGGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: QIGLHNLVDFIHIGQ*RDCQFKMHRDGIGD Trigger: GTCTCCGATCCCGTCACGGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTGGATGAAGTCAACCAGATTATGGAGACCAATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | ATACTCACCCACCAGTGGGATCACGAGAGATGTGGATaGGATGGTCTCTGTAATCACCAGCAAAAAGACAGT | + |
|
Preference number: 6 (lower is better) Translates to: ILTHQWDHERCG*DGLCNHQQKDS Trigger: ACTGTCTTTTTGCTGGTGATTACAGAGACCATCCCATCCACATCTCTCGTGATCCCACTGGTGGGTGAGTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS GCA 72 bp | TCCATAATCTGGTTGACTTCATCCACATTGGCCAGTTaGGTGATTGCCAATTCAAAATGCACCGTGACGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SIIWLTSSTLAS*VIANSKCTVTG Trigger: TCCCGTCACGGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTGGATGAAGTCAACCAGATTATGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS TCA 72 bp | TGGTGGCATTCCTTTAGAAGTTTGGATTCTCCTCGATaGGTAAATTTGACCTTGGCAGGCCTCTTGGTATGG | + |
|
Preference number: 6 (lower is better) Translates to: WWHSFRSLDSPR*VNLTLAGLLVW Trigger: CCATACCAAGAGGCCTGCCAAGGTCAAATTTACTCATCGAGGAGAATCCAAACTTCTAAAGGAATGCCACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | CTCTTTCCAGGTGCTATGTCACTTGATTTTTGGCAGTaGTGGCATTCCTTTAGAAGTTTGGATTCTCCTCGA | + |
|
Preference number: 6 (lower is better) Translates to: LFPGAMSLDFWQ*WHSFRSLDSPR Trigger: TCGAGGAGAATCCAAACTTCTAAAGGAATGCCACCACTGCCAAAAATCAAGTGACATAGCACCTGGAAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | AGATTGGTCTCCATAATCTGGTTGACTTCATCCACATaGGCCAGTTGCGTGATTGCCAATTCAAAATGCACC | + |
|
Preference number: 6 (lower is better) Translates to: RLVSIIWLTSST*ASCVIANSKCT Trigger: GGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTGGATGAAGTCAACCAGATTATGGAGACCAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CAA 72 bp | GCTGGCTTGATCTTCTCTTTCCAGGTGCTATGTCACTaGATTTTTGGCAGTGGTGGCATTCCTTTAGAAGTT | + |
|
Preference number: 6 (lower is better) Translates to: AGLIFSFQVLCH*IFGSGGIPLEV Trigger: AACTTCTAAAGGAATGCCACCACTGCCAAAAATCAAGTGACATAGCACCTGGAAAGAGAAGATCAAGCCAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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| CDS CCA 72 bp | GATCTTCTCTTTCCAGGTGCTATGTCACTTGATTTTTaGCAGTGGTGGCATTCCTTTAGAAGTTTGGATTCT | + |
|
Preference number: 6 (lower is better) Translates to: DLLFPGAMSLDF*QWWHSFRSLDS Trigger: AGAATCCAAACTTCTAAAGGAATGCCACCACTGCCAAAAATCAAGTGACATAGCACCTGGAAAGAGAAGATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033882.10 |
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