Pregenerated sensors for CHRNA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027107Ensembl transcript IDs: ENSMUST00000028515.4
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGCCCAGCACTGGTGCAGGGGTGATGGGAAGTCCCTCAGGAGATTaGAGCCACCTGGGCTCGCACTGGCCTCCTGGTTATGCAGTTTAT | + |
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Preference number: 1 (lower is better) Translates to: EPSTGAGVMGSPSGD*SHLGSHWPPGYAVY Trigger: ATAAACTGCATAACCAGGAGGCCAGTGCGAGCCCAGGTGGCTTCAATCTCCTGAGGGACTTCCCATCACCCCTGCACCAGTGCTGGGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 90 bp | CCCAAAACCCATTCTCCACATCCCTTTTGCTTGTCGTCTGTGGGTTaGAGCCTAGACCGCTTTCTCTGGCTCTTGCCTTCTGTGCGCGTT | + |
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Preference number: 1 (lower is better) Translates to: PKTHSPHPFCLSSVG*SLDRFLWLLPSVRV Trigger: AACGCGCACAGAAGGCAAGAGCCAGAGAAAGCGGTCTAGGCTCCAACCCACAGACGACAAGCAAAAGGGATGTGGAGAATGGGTTTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 90 bp | GCATCAGATCCCACTGTAGATGGTTGTGAGCCACCATGCACCCTGTaGTTGCTGGGAATGATCTTAACCATAGAGCCATCTCTCCAGCCC | + |
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Preference number: 1 (lower is better) Translates to: ASDPTVDGCEPPCTL*LLGMILTIEPSLQP Trigger: GGGCTGGAGAGATGGCTCTATGGTTAAGATCATTCCCAGCAACCACAGGGTGCATGGTGGCTCACAACCATCTACAGTGGGATCTGATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR TCA 90 bp | ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTaGTGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTA | + |
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Preference number: 1 (lower is better) Translates to: IPATTWWLTTICNKI*CPLLECLKTATVYL Trigger: TAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 90 bp | AGAGCCCAGCACTGGTGCAGGGGTGATGGGAAGTCCCTCAGGAGATaGAAGCCACCTGGGCTCGCACTGGCCTCCTGGTTATGCAGTTTA | + |
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Preference number: 2 (lower is better) Translates to: RAQHWCRGDGKSLRR*KPPGLALASWLCSL Trigger: TAAACTGCATAACCAGGAGGCCAGTGCGAGCCCAGGTGGCTTCAATCTCCTGAGGGACTTCCCATCACCCCTGCACCAGTGCTGGGCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 90 bp | AACCCATGCGGGCGAGACGATTCTCATGGGGTCAGAGGCACACCCTaGATGAGGATGGGATCTGCCCTTCCTCGGGTCCTGAGAACAAAA | + |
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Preference number: 2 (lower is better) Translates to: NPCGRDDSHGVRGTP*MRMGSALPRVLRTK Trigger: TTTTGTTCTCAGGACCCGAGGAAGGGCAGATCCCATCCTCATCAAGGGTGTGCCTCTGACCCCATGAGAATCGTCTCGCCCGCATGGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 90 bp | TCAGATCCCACTGTAGATGGTTGTGAGCCACCATGCACCCTGTGGTaGCTGGGAATGATCTTAACCATAGAGCCATCTCTCCAGCCCCTG | + |
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Preference number: 2 (lower is better) Translates to: SDPTVDGCEPPCTLW*LGMILTIEPSLQPL Trigger: CAGGGGCTGGAGAGATGGCTCTATGGTTAAGATCATTCCCAGCAACCACAGGGTGCATGGTGGCTCACAACCATCTACAGTGGGATCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 90 bp | CAGGCCTACACACATACACCCCAAAACCCATTCTCCACATCCCTTTaGCTTGTCGTCTGTGGGTTGGAGCCTAGACCGCTTTCTCTGGCT | + |
|
Preference number: 2 (lower is better) Translates to: QAYTHTPQNPFSTSL*LVVCGLEPRPLSLA Trigger: AGCCAGAGAAAGCGGTCTAGGCTCCAACCCACAGACGACAAGCAAAAGGGATGTGGAGAATGGGTTTTGGGGTGTATGTGTGTAGGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 90 bp | AGACAGGCAGATCTCGGAATGGCCTGCCTAGCCAGCCTAAACTACTaGGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACA | + |
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Preference number: 2 (lower is better) Translates to: RQADLGMACLASLNY*ASSRPVRNSISKTT Trigger: TGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCCAAGTAGTTTAGGCTGGCTAGGCAGGCCATTCCGAGATCTGCCTGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR CCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAGAGATTGAAGCCACCTaGGCTCGCACTGGCCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: GKFQASEKLYLKNNNKTKEIEAT*ARTGLL Trigger: CAGGAGGCCAGTGCGAGCCCAGGTGGCTTCAATCTC...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR GCA 90 bp | CAGATTTCAGAAATGGTGATGGTGTGTGCATACGTTTCTGGTTCCATTCATAGGTTGTATATGCACACCTaGACACCAGCAGAGGGCATC | + |
|
Preference number: 2 (lower is better) Translates to: QISEMVMVCAYVSGSIHRLYMHT*TPAEGI Trigger: GATGCCCTCTGCTGGTGTGCAGGTGTGCATATACAA...CCTATGAATGGAACCAGAAACGTATGCACACACCATCACCATTTCTGAAATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR CCA 90 bp | CAGATTTCAGAAATGGTGATGGTGTGTGCATACGTTTCTGGTTCCATTCATAGGGGACCTATGAAAAGCTaGAGATGGCGGCATGCATCT | + |
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Preference number: 2 (lower is better) Translates to: QISEMVMVCAYVSGSIHRGPMKS*RWRHAS Trigger: AGATGCATGCCGCCATCTCCAGCTTTTCATAGGTCC...CCTATGAATGGAACCAGAAACGTATGCACACACCATCACCATTTCTGAAATCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR TCA 90 bp | CAGATTTCAGAAATGGTGATGGTGTGTGCATACGTTTCTGGTTCCATTCATAGGACCCGACTGTTCTTCTaGAGGTCCAGAGTTCAAATC | + |
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Preference number: 2 (lower is better) Translates to: QISEMVMVCAYVSGSIHRTRLFF*RSRVQI Trigger: GATTTGAACTCTGGACCTTCAGAAGAACAGTCGGGT...CCTATGAATGGAACCAGAAACGTATGCACACACCATCACCATTTCTGAAATCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAGCAAACTATTTGAGATaGAAGAGCCCAGCACTGGTG | + |
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Preference number: 2 (lower is better) Translates to: GKFQASEKLYLKNNNKTKANYLR*KSPALV Trigger: CACCAGTGCTGGGCTCTTTCATCTCAAATAGTTTGC...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR CCA 90 bp | ATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTACATATAATAAAAGGTGGGTGGTTCAGTaGTTAAGAACACTGGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: MPSSGVSEDSYSVFTYNKRWVVQ*LRTLGA Trigger: AGCACCCAGTGTTCTTAACCACTGAACCACCCACCT...TTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR CCA 90 bp | GCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAACCAGCAACCACATGGTaGCTCACAACCATCTGTAAC | + |
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Preference number: 2 (lower is better) Translates to: ASSRPVRNSISKTTTKQKPATTW*LTTICN Trigger: GTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG...TTTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR TCA 90 bp | ATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTACATATAATAAACCAGGAAGCTTTACATaGGAATGTAACACAGCGGCA | + |
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Preference number: 2 (lower is better) Translates to: MPSSGVSEDSYSVFTYNKPGSFT*ECNTAA Trigger: TGCCGCTGTGTTACATTCTCATGTAAAGCTTCCTGG...TTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR TCA 90 bp | ATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTACATATAATAAAAAGAATACAGCCGTGTaGGCAGAGATCACTCTCATT | + |
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Preference number: 2 (lower is better) Translates to: MPSSGVSEDSYSVFTYNKKNTAV*AEITLI Trigger: AATGAGAGTGATCTCTGCTCACACGGCTGTATTCTT...TTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAAAAGTGCAAACTATTTaGGATGAAAGAGCCCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: GKFQASEKLYLKNNNKTKKVQTI*DERAQH Trigger: GTGCTGGGCTCTTTCATCTCAAATAGTTTGCACTTT...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 40% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR GCA 72 bp | TGCAGAAAGAGGAGACAGGCAGATCTCGGAATGGCCTaGCTAGCCAGCCTAAACTACTTGGCAAGTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: CRKRRQADLGMA*LASLNYLASSR Trigger: CCTGGAACTTGCCAAGTAGTTTAGGCTGGCTAGGCAGGCCATTCCGAGATCTGCCTGTCTCCTCTTTCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR TCA 72 bp | GATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCTaGAGGTCCAGAGTTCAAATCCCAGCAACCACATGG | + |
|
Preference number: 3 (lower is better) Translates to: DGSVGKSTRLFF*RSRVQIPATTW Trigger: CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | TGGCGGCATGCATCTGGAATCCCTGCACTCTGTTCATaGGCCGAGAAGTATAGAAAGGAAAATGCCCCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: WRHASGIPALCS*AEKYRKENAPG Trigger: TCCTGGGGCATTTTCCTTTCTATACTTCTCGGCCCATGAACAGAGTGCAGGGATTCCAGATGCATGCCGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | AGGACCTATGAAAAGCTGGAGATGGCGGCATGCATCTaGAATCCCTGCACTCTGTTCATGGGCCGAGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: RTYEKLEMAACI*NPCTLFMGREV Trigger: TACTTCTCGGCCCATGAACAGAGTGCAGGGATTCCAGATGCATGCCGCCATCTCCAGCTTTTCATAGGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | CATTCTCCACATCCCTTTTGCTTGTCGTCTGTGGGTTaGAGCCTAGACCGCTTTCTCTGGCTCTTGCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: HSPHPFCLSSVG*SLDRFLWLLPS Trigger: AGAAGGCAAGAGCCAGAGAAAGCGGTCTAGGCTCCAACCCACAGACGACAAGCAAAAGGGATGTGGAGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | CCCACTGTAGATGGTTGTGAGCCACCATGCACCCTGTaGTTGCTGGGAATGATCTTAACCATAGAGCCATCT | + |
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Preference number: 3 (lower is better) Translates to: PTVDGCEPPCTL*LLGMILTIEPS Trigger: AGATGGCTCTATGGTTAAGATCATTCCCAGCAACCACAGGGTGCATGGTGGCTCACAACCATCTACAGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR GCA 72 bp | AAGTTGGGAGAGCTGAGGCTCAGTTATAGCTCTGTGTaGAAAGCTCTAGGTACAATCCCAAGGAATCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: KLGELRLSYSSV*KALGTIPRNPK Trigger: CTTGGGATTCCTTGGGATTGTACCTAGAGCTTTGCACACAGAGCTATAACTGAGCCTCAGCTCTCCCAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | AACGACCTAAATTCTATCCTAGGACCTATGAAAAGCTaGAGATGGCGGCATGCATCTGGAATCCCTGCACTC | + |
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Preference number: 3 (lower is better) Translates to: NDLNSILGPMKS*RWRHASGIPAL Trigger: GAGTGCAGGGATTCCAGATGCATGCCGCCATCTCCAGCTTTTCATAGGTCCTAGGATAGAATTTAGGTCGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | CTAAATTCTATCCTAGGACCTATGAAAAGCTGGAGATaGCGGCATGCATCTGGAATCCCTGCACTCTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: LNSILGPMKSWR*RHASGIPALCS Trigger: TGAACAGAGTGCAGGGATTCCAGATGCATGCCGCCATCTCCAGCTTTTCATAGGTCCTAGGATAGAATTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR GCA 72 bp | ATGTATTTATGTGTGAGTGCTTTGTATATGCACACCTaGACACCAGCAGAGGGCATCAGATCCCACTGTAGA | + |
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Preference number: 3 (lower is better) Translates to: MYLCVSALYMHT*TPAEGIRSHCR Trigger: TCTACAGTGGGATCTGATGCCCTCTGCTGGTGTGCAGGTGTGCATATACAAAGCACTCACACATAAATACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | CTCTCCAGCCCCTGTTTTAGAATCTTAAGTTCTGTCTaGGTTCAGATCTCAGTTCTTCTACTTCTAGATGGA | + |
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Preference number: 3 (lower is better) Translates to: LSSPCFRILSSV*VQISVLLLLDG Trigger: TCCATCTAGAAGTAGAAGAACTGAGATCTGAACCCAGACAGAACTTAAGATTCTAAAACAGGGGCTGGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CCA 72 bp | AAACAGAAATCACTTAAGAAAGCATTCTCCCTCTCCTaGTTTCAGAAGTCTACTTTAAACCATGAGGTTTTG | + |
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Preference number: 3 (lower is better) Translates to: KQKSLKKAFSLS*FQKSTLNHEVL Trigger: CAAAACCTCATGGTTTAAAGTAGACTTCTGAAACCAGGAGAGGGAGAATGCTTTCTTAAGTGATTTCTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 72 bp | GGGCGAGACGATTCTCATGGGGTCAGAGGCACACCCTaGATGAGGATGGGATCTGCCCTTCCTCGGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: GRDDSHGVRGTP*MRMGSALPRVL Trigger: CAGGACCCGAGGAAGGGCAGATCCCATCCTCATCAAGGGTGTGCCTCTGACCCCATGAGAATCGTCTCGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GGGCCTGATTCCCAGGTTCCATGTGGACGCTCACAACCATTTGTAGTTCCAGTTGCACCCACTCGGGCATaGTGTGGGTGCTGGGCGAAC | + |
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Preference number: 4 (lower is better) Translates to: GPDSQVPCGRSQPFVVPVAPTRA*CGCWAN Trigger: GTTCGCCCAGCACCCACATCATGCCCGAGTGGGTGC...AACTGGAACTACAAATGGTTGTGAGCGTCCACATGGAACCTGGGAATCAGGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GGGCCTGATTCCCAGGTTCCATGTGGACGCTCACAACCATTTGTAGTTCCAGTTTGTCCAGGTAGGGAGTaGTGGGGCAGCAGGAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: GPDSQVPCGRSQPFVVPVCPGRE*WGSRSR Trigger: TCTACTCCTGCTGCCCCACCACTCCCTACCTGGACA...AACTGGAACTACAAATGGTTGTGAGCGTCCACATGGAACCTGGGAATCAGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | TCAGTGGTTAAGAACACTGGGTGCTCTTCCAGAGGGCCTGATTCCCAGGTTCCAGCACAGCGCTGGAGGTaGAAGGGATTAGCTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: SVVKNTGCSSRGPDSQVPAQRWR*KGLAPQ Trigger: TTGTGGAGCTAATCCCTTCCACCTCCAGCGCTGTGC...TGGAACCTGGGAATCAGGCCCTCTGGAAGAGCACCCAGTGTTCTTAACCACTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GGGCCTGATTCCCAGGTTCCATGTGGACGCTCACAACCATTTGTAGTTCCAGTTTCAGGGGCACAGCGCTaGAGGTGGAAGGGATTAGCT | + |
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Preference number: 4 (lower is better) Translates to: GPDSQVPCGRSQPFVVPVSGAQR*RWKGLA Trigger: AGCTAATCCCTTCCACCTCCAGCGCTGTGCCCCTGA...AACTGGAACTACAAATGGTTGTGAGCGTCCACATGGAACCTGGGAATCAGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 72 bp | CCATTCTCCACATCCCTTTTGCTTGTCGTCTGTGGGTaGGAGCCTAGACCGCTTTCTCTGGCTCTTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PFSTSLLLVVCG*EPRPLSLALAF Trigger: GAAGGCAAGAGCCAGAGAAAGCGGTCTAGGCTCCAACCCACAGACGACAAGCAAAAGGGATGTGGAGAATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR GCA 90 bp | TCAGTGGTTAAGAACACTGGGTGCTCTTCCAGAGGGCCTGATTCCCAGGTTCCATGCCCAGCTTCATGCTaGAGTTCTGCTCATCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SVVKNTGCSSRGPDSQVPCPASC*SSAHRR Trigger: CCTTCGATGAGCAGAACTGCAGCATGAAGCTGGGCA...TGGAACCTGGGAATCAGGCCCTCTGGAAGAGCACCCAGTGTTCTTAACCACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | AGGATTCAAGGAGACAGACCTTCCTCTCTTCCATCTTTCCTAGCGATGGCTATGACTCCCCGCTCTCCATaGAGTTACTCAGGTCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RIQGDRPSSLPSFLAMAMTPRSP*SYSGRA Trigger: AGCCCGACCTGAGTAACTTCATGGAGAGCGGGGAGT...CATAGCCATCGCTAGGAAAGATGGAAGAGAGGAAGGTCTGTCTCCTTGAATCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | AGGATTCAAGGAGACAGACCTTCCTCTCTTCCATCTTTCCTAGCGATGGCTATGTCACCTCAGGGTGCTTaGTCAGCGGAGAGTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: RIQGDRPSSLPSFLAMAMSPQGA*SAESES Trigger: GCTTTCACTCTCCGCTGATCAAGCACCCTGAGGTGA...CATAGCCATCGCTAGGAAAGATGGAAGAGAGGAAGGTCTGTCTCCTTGAATCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 72 bp | ACACATACACCCCAAAACCCATTCTCCACATCCCTTTaGCTTGTCGTCTGTGGGTTGGAGCCTAGACCGCTT | + |
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Preference number: 4 (lower is better) Translates to: THTPQNPFSTSL*LVVCGLEPRPL Trigger: AAGCGGTCTAGGCTCCAACCCACAGACGACAAGCAAAAGGGATGTGGAGAATGGGTTTTGGGGTGTATGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 72 bp | GATCTCGGAATGGCCTGCCTAGCCAGCCTAAACTACTaGGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCA | + |
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Preference number: 4 (lower is better) Translates to: DLGMACLASLNY*ASSRPVRNSIS Trigger: TGAGATAGAGTTTCTCACTGGCCTGGAACTTGCCAAGTAGTTTAGGCTGGCTAGGCAGGCCATTCCGAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | AGGATTCAAGGAGACAGACCTTCCTCTCTTCCATCTTTCCTAGCGATGGCTATGTTGATCAGCGGAGAGTaGAAGCCCATAGGTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: RIQGDRPSSLPSFLAMAMLISGE*KPIGGG Trigger: TCCTCCACCTATGGGCTTTCACTCTCCGCTGATCAA...CATAGCCATCGCTAGGAAAGATGGAAGAGAGGAAGGTCTGTCTCCTTGAATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GGGCCTGATTCCCAGGTTCCATGTGGACGCTCACAACCATTTGTAGTTCCAGTTGGTAGAACACCAGGCTaGTTAAGAAGGAGAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: GPDSQVPCGRSQPFVVPVGRTPG*LRRRRA Trigger: TGCTCTTCTCCTTCTTAACCAGCCTGGTGTTCTACC...AACTGGAACTACAAATGGTTGTGAGCGTCCACATGGAACCTGGGAATCAGGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | AGGCTCAGTTATAGCTCTGTGTGCAAAGCTCTAGGTACAATCCCAAGGAATCCCCCTCAGCGGCGTTATTaGACTCCTGGTCTGACTTCA | + |
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Preference number: 4 (lower is better) Translates to: RLSYSSVCKALGTIPRNPPQRRY*TPGLTS Trigger: TGAAGTCAGACCAGGAGTCCAATAACGCCGCTGAGG...GGGATTCCTTGGGATTGTACCTAGAGCTTTGCACACAGAGCTATAACTGAGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 72 bp | ACTGTAGATGGTTGTGAGCCACCATGCACCCTGTGGTaGCTGGGAATGATCTTAACCATAGAGCCATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TVDGCEPPCTLW*LGMILTIEPSL Trigger: GAGAGATGGCTCTATGGTTAAGATCATTCCCAGCAACCACAGGGTGCATGGTGGCTCACAACCATCTACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAAGCCCCGAGCTTCCTTaGTCACCCACTCCCCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: GKFQASEKLYLKNNNKTKSPELP*SPTPRS Trigger: AGAGCGGGGAGTGGGTGATCAAGGAAGCTCGGGGCT...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR GCA 90 bp | AGGCTCAGTTATAGCTCTGTGTGCAAAGCTCTAGGTACAATCCCAAGGAATCCCGTCTTCAAAGAGCTTTaGCACCAGACGCGTCTCATG | + |
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Preference number: 4 (lower is better) Translates to: RLSYSSVCKALGTIPRNPVFKEL*HQTRLM Trigger: CATGAGACGCGTCTGGTGGCAAAGCTCTTTGAAGAC...GGGATTCCTTGGGATTGTACCTAGAGCTTTGCACACAGAGCTATAACTGAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GCACTCTGTTCATGGGCCGAGAAGTATAGAAAGGAAAATGCCCCAGGAAGCTTTGCTTTTAAAGATGGCTaGCGGTGTCCAGGTGATGTG | + |
|
Preference number: 4 (lower is better) Translates to: ALCSWAEKYRKENAPGSFAFKDG*RCPGDV Trigger: CACATCACCTGGACACCGCCAGCCATCTTTAAAAGC...AAAGCTTCCTGGGGCATTTTCCTTTCTATACTTCTCGGCCCATGAACAGAGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | CAGATTTCAGAAATGGTGATGGTGTGTGCATACGTTTCTGGTTCCATTCATAGGTCTCCCCTGAGTCTGTaGGCAGGTAGAACACCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: QISEMVMVCAYVSGSIHRSPLSL*AGRTPG Trigger: GCCTGGTGTTCTACCTGCCCACAGACTCAGGGGAGA...CCTATGAATGGAACCAGAAACGTATGCACACACCATCACCATTTCTGAAATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAACACTCGGGCATGATGTaGGTGCTGGGCGAACGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GKFQASEKLYLKNNNKTKHSGMM*VLGERW Trigger: CCACCGTTCGCCCAGCACCCACATCATGCCCGAGTG...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | AGGCTCAGTTATAGCTCTGTGTGCAAAGCTCTAGGTACAATCCCAAGGAATCCCGTTGATGTAACTCAATaGGCCGACCTGCAAACACAG | + |
|
Preference number: 4 (lower is better) Translates to: RLSYSSVCKALGTIPRNPVDVTQ*ADLQTQ Trigger: CTGTGTTTGCAGGTCGGCTCATTGAGTTACATCAAC...GGGATTCCTTGGGATTGTACCTAGAGCTTTGCACACAGAGCTATAACTGAGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | AGGATTCAAGGAGACAGACCTTCCTCTCTTCCATCTTTCCTAGCGATGGCTATGGCGTTATTGGACTCCTaGTCTGACTTCATGGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: RIQGDRPSSLPSFLAMAMALLDS*SDFMVS Trigger: AGAGACCATGAAGTCAGACCAGGAGTCCAATAACGC...CATAGCCATCGCTAGGAAAGATGGAAGAGAGGAAGGTCTGTCTCCTTGAATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GCACTCTGTTCATGGGCCGAGAAGTATAGAAAGGAAAATGCCCCAGGAAGCTTTTCATCGAAGGGAAAGTaGGTGACAATGATCTCACAG | + |
|
Preference number: 4 (lower is better) Translates to: ALCSWAEKYRKENAPGSFSSKGK*VTMISQ Trigger: CTGTGAGATCATTGTCACTCACTTTCCCTTCGATGA...AAAGCTTCCTGGGGCATTTTCCTTTCTATACTTCTCGGCCCATGAACAGAGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR GCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAACTCAATGAGCCGACCTaGAAACACAGCCAGCGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GKFQASEKLYLKNNNKTKLNEPT*KHSQRP Trigger: GGGACGCTGGCTGTGTTTGCAGGTCGGCTCATTGAG...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAACGTCATCTTCTCCCCTaGGTCTGTGGGCAGGTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: GKFQASEKLYLKNNNKTKRHLLP*VCGQVE Trigger: TTCTACCTGCCCACAGACTCAGGGGAGAAGATGACG...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GTAGAACACTGCATGTTTGGTAAGTGTGAAAGGATTCAAGGAGACAGACCTTCCATTGGACTCCTGGTCTaGCTTCATGGTCTCTGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: VEHCMFGKCERIQGDRPSIGLLV*LHGLCN Trigger: ATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAAT...GGAAGGTCTGTCTCCTTGAATCCTTTCACACTTACCAAACATGCAGTGTTCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAACCAGGTAGGGAGTGGTaGGGCAGCAGGAGTAGAACA | + |
|
Preference number: 4 (lower is better) Translates to: ASSRPVRNSISKTTTKQKPGREW*GSRSRT Trigger: TGTTCTACTCCTGCTGCCCCACCACTCCCTACCTGG...TTTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAACTCCGAGGAGGATGTaGTCCATCACCATGGCAACA | + |
|
Preference number: 4 (lower is better) Translates to: GKFQASEKLYLKNNNKTKTPRRM*SITMAT Trigger: TGTTGCCATGGTGATGGATCACATCCTCCTCGGAGT...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR GCA 90 bp | ATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTACATATAATAAACGTCATAGGTCCAGGTaGCCAGCTTCATGCTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: MPSSGVSEDSYSVFTYNKRHRSR*PASCCS Trigger: ACTGCAGCATGAAGCTGGGCACCTGGACCTATGACG...TTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAAACTTCACGCCCTCGATaGCGCTTTTCACCTCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ASSRPVRNSISKTTTKQKTSRPR*RFSPQG Trigger: ACCCTGAGGTGAAAAGCGCCATCGAGGGCGTGAAGT...TTTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGC 44% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR GCA 90 bp | GCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAAAGGTGCCCAGCTTCATaGTGCAGTTCTGCTCATCGA | + |
|
Preference number: 4 (lower is better) Translates to: ASSRPVRNSISKTTTKQKRCPAS*CSSAHR Trigger: TCGATGAGCAGAACTGCAGCATGAAGCTGGGCACCT...TTTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | GCACTCTGTTCATGGGCCGAGAAGTATAGAAAGGAAAATGCCCCAGGAAGCTTTTCCTCCATAGTCATCTaGATTCCATTTCAAGTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: ALCSWAEKYRKENAPGSFSSIVI*IPFQVV Trigger: TACAACTTGAAATGGAATCCAGATGACTATGGAGGA...AAAGCTTCCTGGGGCATTTTCCTTTCTATACTTCTCGGCCCATGAACAGAGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR TCA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAATTGGTTGTCACAATCTaGTTTACTTCATCCACATTG | + |
|
Preference number: 4 (lower is better) Translates to: GKFQASEKLYLKNNNKTKLVVTI*FTSSTL Trigger: CAATGTGGATGAAGTAAATCAGATTGTGACAACCAA...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CCA 90 bp | ATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTACATATAATAAAGTTTCAGACGTACATTaGTTGTCACAATCTGATTTA | + |
|
Preference number: 4 (lower is better) Translates to: MPSSGVSEDSYSVFTYNKVSDVH*LSQSDL Trigger: TAAATCAGATTGTGACAACCAATGTACGTCTGAAAC...TTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| 3UTR CAA 72 bp | TCCTGGTTTCAGAAGTCTACTTTAAACCATGAGGTTTaGATACTATTTGTATGTGATCGCCCTAAAATTACC | + |
|
Preference number: 4 (lower is better) Translates to: SWFQKSTLNHEV*ILFVCDRPKIT Trigger: GGTAATTTTAGGGCGATCACATACAAATAGTATCAAAACCTCATGGTTTAAAGTAGACTTCTGAAACCAGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS TCA 90 bp | CCCTCGATGGCGCTTTTCACCTCAGGGTGCTTGATCAGCGGAGAGTaGAAGCCCATAGGTGGAGGACCCGGCTTCCCAGAGATGTCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: PSMALFTSGCLISGE*KPIGGGPGFPEMSD Trigger: ATCTGACATCTCTGGGAAGCCGGGTCCTCCACCTATGGGCTTTCACTCTCCGCTGATCAAGCACCCTGAGGTGAAAAGCGCCATCGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CAA 90 bp | GGGTGCTCTTCCAGAGGGCCTGATTCCCAGGTTCCATGTGGACGCTCACAACCAGAACGGTGGTGTGTGTaGATGACGATGACGGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: GCSSRGPDSQVPCGRSQPERWCV*MTMTVM Trigger: CATCACCGTCATCGTCATCAACACACACCACCGTTC...TGGTTGTGAGCGTCCACATGGAACCTGGGAATCAGGCCCTCTGGAAGAGCACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS TCA 90 bp | GGCAACATACTTCCATTCCTCAGCGGCGTTATTGGACTCCTGGTCTaGCTTCATGGTCTCTGCAATGTACTTCACGCCCTCGATGGCGCT | + |
|
Preference number: 5 (lower is better) Translates to: GNILPFLSGVIGLLV*LHGLCNVLHALDGA Trigger: AGCGCCATCGAGGGCGTGAAGTACATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAATAACGCCGCTGAGGAATGGAAGTATGTTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CCA 90 bp | GGGAAAGTGAGTGACAATGATCTCACAGTAGCTTTTAAAGATGGCTaGCGGTGTCCAGGTGATGTGGCCGGTGTAGTCCAGGAGCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: GKVSDNDLTVAFKDG*RCPGDVAGVVQEHL Trigger: AAGGTGCTCCTGGACTACACCGGCCACATCACCTGGACACCGCCAGCCATCTTTAAAAGCTACTGTGAGATCATTGTCACTCACTTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CCA 90 bp | ACTTCCATTCCTCAGCGGCGTTATTGGACTCCTGGTCTGACTTCATaGTCTCTGCAATGTACTTCACGCCCTCGATGGCGCTTTTCACCT | + |
|
Preference number: 5 (lower is better) Translates to: TSIPQRRYWTPGLTS*SLQCTSRPRWRFSP Trigger: AGGTGAAAAGCGCCATCGAGGGCGTGAAGTACATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAATAACGCCGCTGAGGAATGGAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CAA 90 bp | TCAGTGGTTAAGAACACTGGGTGCTCTTCCAGAGGGCCTGATTCCCAGGTTCCAAGCACCTTGGTGAATTaGACAATGGCAAAGTCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: SVVKNTGCSSRGPDSQVPSTLVN*TMAKSP Trigger: CGGCGACTTTGCCATTGTCAAATTCACCAAGGTGCT...TGGAACCTGGGAATCAGGCCCTCTGGAAGAGCACCCAGTGTTCTTAACCACTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CAA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAACAGCCCCGAGCTTCCTaGATCACCCACTCCCCGCTC | + |
|
Preference number: 5 (lower is better) Translates to: GKFQASEKLYLKNNNKTKQPRAS*ITHSPL Trigger: GAGCGGGGAGTGGGTGATCAAGGAAGCTCGGGGCTG...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CAA 90 bp | AGGCTCAGTTATAGCTCTGTGTGCAAAGCTCTAGGTACAATCCCAAGGAATCCCTCAGACGTACATTGGTaGTCACAATCTGATTTACTT | + |
|
Preference number: 5 (lower is better) Translates to: RLSYSSVCKALGTIPRNPSDVHW*SQSDLL Trigger: AAGTAAATCAGATTGTGACAACCAATGTACGTCTGA...GGGATTCCTTGGGATTGTACCTAGAGCTTTGCACACAGAGCTATAACTGAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CAA 90 bp | GCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAAAAGTCTTCAAAGAGCTTaGCCACCAGACGCGTCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: ASSRPVRNSISKTTTKQKSLQRA*PPDASH Trigger: ATGAGACGCGTCTGGTGGCAAAGCTCTTTGAAGACT...TTTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS-3UTR CAA 90 bp | GGCAAGTTCCAGGCCAGTGAGAAACTCTATCTCAAAAACAACAACAAAACAAAATTTACTTCATCCACATaGATAAGCTGGATCAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: GKFQASEKLYLKNNNKTKFTSST*ISWISC Trigger: ACAGCTGATCCAGCTTATCAATGTGGATGAAGTAAA...TTTTGTTTTGTTGTTGTTTTTGAGATAGAGTTTCTCACTGGCCTGGAACTTGCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS TCA 72 bp | GCGCTTTTCACCTCAGGGTGCTTGATCAGCGGAGAGTaGAAGCCCATAGGTGGAGGACCCGGCTTCCCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: ALFTSGCLISGE*KPIGGGPGFPE Trigger: CTCTGGGAAGCCGGGTCCTCCACCTATGGGCTTTCACTCTCCGCTGATCAAGCACCCTGAGGTGAAAAGCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CCA 72 bp | CACTCCCCGCTCTCCATGAAGTTACTCAGGTCGGGCTaGTCACTTTCCGGGTTAATGGCCACCACAGAGCCG | + |
|
Preference number: 6 (lower is better) Translates to: HSPLSMKLLRSG*SLSGLMATTEP Trigger: CGGCTCTGTGGTGGCCATTAACCCGGAAAGTGACCAGCCCGACCTGAGTAACTTCATGGAGAGCGGGGAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CAA 90 bp | GGTCCTCCACTGGCCGGACTACACTGCTGTAGTCTTCAAAGAGCTTaGCCACCAGACGCGTCTCATGTTCGGAGCCCAGAACAAGGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: GPPLAGLHCCSLQRA*PPDASHVRSPEQGQ Trigger: CTGGCCTTGTTCTGGGCTCCGAACATGAGACGCGTCTGGTGGCAAAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAGTGGAGGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS GCA 72 bp | CAATCTCACGGTGGTCCTCCACTGGCCGGACTACACTaGTGTAGTCTTCAAAGAGCTTTGCCACCAGACGCG | + |
|
Preference number: 6 (lower is better) Translates to: QSHGGPPLAGLH*CSLQRALPPDA Trigger: CGCGTCTGGTGGCAAAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAGTGGAGGACCACCGTGAGATTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CAA 72 bp | CTGGCCGGACTACACTGCTGTAGTCTTCAAAGAGCTTaGCCACCAGACGCGTCTCATGTTCGGAGCCCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: LAGLHCCSLQRA*PPDASHVRSPE Trigger: TTCTGGGCTCCGAACATGAGACGCGTCTGGTGGCAAAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CCA 72 bp | CACGGTGACTTGTACAATCTCACGGTGGTCCTCCACTaGCCGGACTACACTGCTGTAGTCTTCAAAGAGCTT | + |
|
Preference number: 6 (lower is better) Translates to: HGDLYNLTVVLH*PDYTAVVFKEL Trigger: AAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAGTGGAGGACCACCGTGAGATTGTACAAGTCACCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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| CDS CCA 72 bp | ACATACTTCCATTCCTCAGCGGCGTTATTGGACTCCTaGTCTGACTTCATGGTCTCTGCAATGTACTTCACG | + |
|
Preference number: 6 (lower is better) Translates to: TYFHSSAALLDS*SDFMVSAMYFT Trigger: CGTGAAGTACATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAATAACGCCGCTGAGGAATGGAAGTATGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028515.4 |
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