Pregenerated sensors for CHRDL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030732Ensembl transcript IDs: ENSMUST00000032977.11, ENSMUST00000107084.8, ENSMUST00000144808.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCAGTCCTGGTAGCCATCGATACATGTGCACAGGATGCAGGGCATaGGGCCAAAGGAGAGCACAGTGGGGTGCCACACCTCCCCATGGG | + |
|
Preference number: 5 (lower is better) Translates to: GSPGSHRYMCTGCRA*GQRRAQWGATPPHG Trigger: CCCATGGGGAGGTGTGGCACCCCACTGTGCTCTCCTTTGGCCCCATGCCCTGCATCCTGTGCACATGTATCGATGGCTACCAGGACTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS GCA 90 bp | TCACACGGTGGCAGTCCTGGTAGCCATCGATACATGTGCACAGGATaGAGGGCATGGGGCCAAAGGAGAGCACAGTGGGGTGCCACACCT | + |
|
Preference number: 5 (lower is better) Translates to: SHGGSPGSHRYMCTG*RAWGQRRAQWGATP Trigger: AGGTGTGGCACCCCACTGTGCTCTCCTTTGGCCCCATGCCCTGCATCCTGTGCACATGTATCGATGGCTACCAGGACTGCCACCGTGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 90 bp | CCTCGTCCTCTGGGCAGATCTTGCAGCACTTCCCAGCCACTTTCTTaGGTTGACTGCAGGGATATTGGGTGGGGCAGGTCACACGGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PRPLGRSCSTSQPLS*VDCRDIGWGRSHGG Trigger: GCCACCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGCCCAGAGGACGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS TCA 90 bp | TCCTCTGGGCAGATCTTGCAGCACTTCCCAGCCACTTTCTTGGGTTaGCTGCAGGGATATTGGGTGGGGCAGGTCACACGGTGGCAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: SSGQILQHFPATFLG*LQGYWVGQVTRWQS Trigger: GGACTGCCACCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGCCCAGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 90 bp | TACATGTGCACAGGATGCAGGGCATGGGGCCAAAGGAGAGCACAGTaGGGTGCCACACCTCCCCATGGGAGTATGTCTTCCCATTGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: YMCTGCRAWGQRRAQ*GATPPHGSMSSHCV Trigger: CACACAATGGGAAGACATACTCCCATGGGGAGGTGTGGCACCCCACTGTGCTCTCCTTTGGCCCCATGCCCTGCATCCTGTGCACATGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 90 bp | AACTGGCCTGGTACCTTGGGACACCGGGTGGAAATGACCTCACTGTaGTCATCTTCCGCCTCGTCCTCTGGGCAGATCTTGCAGCACTTC | + |
|
Preference number: 5 (lower is better) Translates to: NWPGTLGHRVEMTSL*SSSASSSGQILQHF Trigger: GAAGTGCTGCAAGATCTGCCCAGAGGACGAGGCGGAAGATGACCACAGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 90 bp | GCTGTCTGGGCTTGGAGATGCCAACGTGTACACCTGGAACTGGCCTaGTACCTTGGGACACCGGGTGGAAATGACCTCACTGTGGTCATC | + |
|
Preference number: 5 (lower is better) Translates to: AVWAWRCQRVHLELA*YLGTPGGNDLTVVI Trigger: GATGACCACAGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGCCCAGACAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 90 bp | TGTAGGCTGTCTGGGCTTGGAGATGCCAACGTGTACACCTGGAACTaGCCTGGTACCTTGGGACACCGGGTGGAAATGACCTCACTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: CRLSGLGDANVYTWN*PGTLGHRVEMTSLW Trigger: CCACAGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGCCCAGACAGCCTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS GCA 90 bp | TCACATGTCCATTCTCAGAGCAGGTACAGCGCACGCAGTATATCGTaGCTTGTGGTTCCAAGTAGGGGTGCCAGCTCTGGCCGGGGGTAT | + |
|
Preference number: 5 (lower is better) Translates to: SHVHSQSRYSARSIS*LVVPSRGASSGRGY Trigger: ATACCCCCGGCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCTGAGAATGGACATGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 90 bp | AGCACTTCCCAGCCACTTTCTTGGGTTGACTGCAGGGATATTGGGTaGGGCAGGTCACACGGTGGCAGTCCTGGTAGCCATCGATACATG | + |
|
Preference number: 5 (lower is better) Translates to: STSQPLSWVDCRDIG*GRSHGGSPGSHRYM Trigger: CATGTATCGATGGCTACCAGGACTGCCACCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS GCA 90 bp | ATCTTTTCACCGAAAAGGCAGACTTTGCCCGAGCGGGATAGTGCTTaGGAGTCCAACGGGAGCCAGAACATCACGAGTCCCAGCAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: IFSPKRQTLPERDSA*ESNGSQNITSPSKE Trigger: CTCTTTGCTGGGACTCGTGATGTTCTGGCTCCCGTTGGACTCGCAAGCACTATCCCGCTCGGGCAAAGTCTGCCTTTTCGGTGAAAAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032977.11 |
||
| CDS CCA 90 bp | TCCATTCTCAGAGCAGGTACAGCGCACGCAGTATATCGTGCCTTGTaGTTCCAAGTAGGGGTGCCAGCTCTGGCCGGGGGTATATATCTT | + |
|
Preference number: 5 (lower is better) Translates to: SILRAGTAHAVYRAL*FQVGVPALAGGIYL Trigger: AAGATATATACCCCCGGCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCTGAGAATGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS GCA 90 bp | TTCACCAGCTTCCAAATGTACATCTCTACCTGGTCAGAGGCTTCATaGTCCAGGACAAAGCGGTGTAGGCTGTCTGGGCTTGGAGATGCC | + |
|
Preference number: 5 (lower is better) Translates to: FTSFQMYISTWSEAS*SRTKRCRLSGLGDA Trigger: GGCATCTCCAAGCCCAGACAGCCTACACCGCTTTGTCCTGGAGCATGAAGCCTCTGACCAGGTAGAGATGTACATTTGGAAGCTGGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS TCA 90 bp | TTTCTCCTTCAAGATAATCTTGATGGTTGTGCTGCCCATTCCTACTaGCTGGAAGTGGCGAGGGATGAAGCCCAGAGGGGAGCTGAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: FLLQDNLDGCAAHSY*LEVARDEAQRGAEA Trigger: AGCCTCAGCTCCCCTCTGGGCTTCATCCCTCGCCACTTCCAGTCAGTAGGAATGGGCAGCACAACCATCAAGATTATCTTGAAGGAGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS TCA 90 bp | GGCAGACTTTGCCCGAGCGAGCAAACAAACTTGGCTGAGACACAATaGAGAACTCCTGAATACAAGAATGCGCAACAGGTTCGGGTCCTA | + |
|
Preference number: 5 (lower is better) Translates to: GRLCPSEQTNLAETQ*RTPEYKNAQQVRVL Trigger: TAGGACCCGAACCTGTTGCGCATTCTTGTATTCAGGAGTTCTTCATTGTGTCTCAGCCAAGTTTGTTTGCTCGCTCGGGCAAAGTCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107084.8 |
||
| CDS CCA 90 bp | GGGAATGTCTCTCTCCATGCTGCAGCTGTGTCAAGTTTTCTTCTGTaGAACTCTCAGTTGTCCTGTCTTTGCAGGTCTGACAGCAGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: GNVSLHAAAVSSFLL*NSQLSCLCRSDSRN Trigger: ATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGAAGAAAACTTGACACAGCTGCAGCATGGAGAGAGACATTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 90 bp | CTTTTCACCGAAAAGGCAGACTTTGCCCGAGCGAGCAAACAAACTTaGCTGAGACACAATGAAGAACTCCTGAATACAAGAATGCGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: LFTEKADFARASKQT*LRHNEELLNTRMRN Trigger: GTTGCGCATTCTTGTATTCAGGAGTTCTTCATTGTGTCTCAGCCAAGTTTGTTTGCTCGCTCGGGCAAAGTCTGCCTTTTCGGTGAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | GGGGGCTGGCGTGCTGGGGCCTCTCCTCTCCGAGCATaGATCCTGGGAATGTCTCTCTCCATGCTGCAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: GGWRAGASPLRA*ILGMSLSMLQL Trigger: CAGCTGCAGCATGGAGAGAGACATTCCCAGGATCCATGCTCGGAGAGGAGAGGCCCCAGCACGCCAGCCCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 72 bp | AGAGCAGGTACAGCGCACGCAGTATATCGTGCCTTGTaGTTCCAAGTAGGGGTGCCAGCTCTGGCCGGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: RAGTAHAVYRAL*FQVGVPALAGG Trigger: ACCCCCGGCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CAA 72 bp | CTCAGAGCAGGTACAGCGCACGCAGTATATCGTGCCTaGTGGTTCCAAGTAGGGGTGCCAGCTCTGGCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: LRAGTAHAVYRA*WFQVGVPALAG Trigger: CCCGGCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS TCA 72 bp | CAGGACTTTAGGGGAACTCGGAGGCCAGAGGGGACATaGGGATCCACACACCTGGGACAGCATTGCTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: QDFRGTRRPEGT*GSTHLGQHCCG Trigger: GCCACAGCAATGCTGTCCCAGGTGTGTGGATCCTCATGTCCCCTCTGGCCTCCGAGTTCCCCTAAAGTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CAA 90 bp | GTCCTCTGGGCAGATCTTGCAGCACTTCCCAGCCACTTTCTTGGGTaGACTGCAGGGATATTGGGTGGGGCAGGTCACACGGTGGCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: VLWADLAALPSHFLG*TAGILGGAGHTVAV Trigger: GACTGCCACCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGCCCAGAGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CAA 90 bp | GGGCTTGGAGATGCCAACGTGTACACCTGGAACTGGCCTGGTACCTaGGGACACCGGGTGGAAATGACCTCACTGTGGTCATCTTCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: GLGDANVYTWNWPGT*GHRVEMTSLWSSSA Trigger: GGCGGAAGATGACCACAGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CAA 90 bp | CAGAGGCTTCATGCTCCAGGACAAAGCGGTGTAGGCTGTCTGGGCTaGGAGATGCCAACGTGTACACCTGGAACTGGCCTGGTACCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: QRLHAPGQSGVGCLG*EMPTCTPGTGLVPW Trigger: CCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGCCCAGACAGCCTACACCGCTTTGTCCTGGAGCATGAAGCCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 72 bp | TTGATGGTTGTGCTGCCCATTCCTACTGACTGGAAGTaGCGAGGGATGAAGCCCAGAGGGGAGCTGAGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LMVVLPIPTDWK*RGMKPRGELRL Trigger: CAGCCTCAGCTCCCCTCTGGGCTTCATCCCTCGCCACTTCCAGTCAGTAGGAATGGGCAGCACAACCATCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 72 bp | CAGCCACTTTCTTGGGTTGACTGCAGGGATATTGGGTaGGGCAGGTCACACGGTGGCAGTCCTGGTAGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: QPLSWVDCRDIG*GRSHGGSPGSH Trigger: ATGGCTACCAGGACTGCCACCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | GGTACCTTGGGACACCGGGTGGAAATGACCTCACTGTaGTCATCTTCCGCCTCGTCCTCTGGGCAGATCTTG | + |
|
Preference number: 6 (lower is better) Translates to: GTLGHRVEMTSL*SSSASSSGQIL Trigger: CAAGATCTGCCCAGAGGACGAGGCGGAAGATGACCACAGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS TCA 72 bp | CAGATCTTGCAGCACTTCCCAGCCACTTTCTTGGGTTaGCTGCAGGGATATTGGGTGGGGCAGGTCACACGG | + |
|
Preference number: 6 (lower is better) Translates to: QILQHFPATFLG*LQGYWVGQVTR Trigger: CCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS GCA 72 bp | CATTCTCAGAGCAGGTACAGCGCACGCAGTATATCGTaGCTTGTGGTTCCAAGTAGGGGTGCCAGCTCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: HSQSRYSARSIS*LVVPSRGASSG Trigger: GCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCTGAGAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS GCA 72 bp | TGTGGTCATCTTCCGCCTCGTCCTCTGGGCAGATCTTaGAGCACTTCCCAGCCACTTTCTTGGGTTGACTGC | + |
|
Preference number: 6 (lower is better) Translates to: CGHLPPRPLGRS*STSQPLSWVDC Trigger: GCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGCCCAGAGGACGAGGCGGAAGATGACCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | ACACACTGGTTGGACAGGCGGGCAGGGAACAGCTCCTaGGCACTGAAGATCTCTCCATGTTGGTATGTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: THWLDRRAGNSS*ALKISPCWYVV Trigger: GACCACATACCAACATGGAGAGATCTTCAGTGCCCAGGAGCTGTTCCCTGCCCGCCTGTCCAACCAGTGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | CTGGGCAGATCTTGCAGCACTTCCCAGCCACTTTCTTaGGTTGACTGCAGGGATATTGGGTGGGGCAGGTCA | + |
|
Preference number: 6 (lower is better) Translates to: LGRSCSTSQPLS*VDCRDIGWGRS Trigger: TGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | GCTTGGAGATGCCAACGTGTACACCTGGAACTGGCCTaGTACCTTGGGACACCGGGTGGAAATGACCTCACT | + |
|
Preference number: 6 (lower is better) Translates to: AWRCQRVHLELA*YLGTPGGNDLT Trigger: AGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CAA 72 bp | GCAGATCTTGCAGCACTTCCCAGCCACTTTCTTGGGTaGACTGCAGGGATATTGGGTGGGGCAGGTCACACG | + |
|
Preference number: 6 (lower is better) Translates to: ADLAALPSHFLG*TAGILGGAGHT Trigger: CGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CAA 72 bp | GATGCCAACGTGTACACCTGGAACTGGCCTGGTACCTaGGGACACCGGGTGGAAATGACCTCACTGTGGTCA | + |
|
Preference number: 6 (lower is better) Translates to: DANVYTWNWPGT*GHRVEMTSLWS Trigger: TGACCACAGTGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS TCA 72 bp | TCTGTGGAACTCTCAGTTGTCCTGTCTTTGCAGGTCTaGCAGCAGGAATCAGGCAGAGGGAGTGTGGTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: SVELSVVLSLQV*QQESGRGSVVG Trigger: CCCCACCACACTCCCTCTGCCTGATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CAA 90 bp | ATGTCCATTCTCAGAGCAGGTACAGCGCACGCAGTATATCGTGCCTaGTGGTTCCAAGTAGGGGTGCCAGCTCTGGCCGGGGGTATATAT | + |
|
Preference number: 6 (lower is better) Translates to: MSILRAGTAHAVYRA*WFQVGVPALAGGIY Trigger: ATATATACCCCCGGCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCTGAGAATGGACAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | CCAAAGGAGAGCACAGTGGGGTGCCACACCTCCCCATaGGAGTATGTCTTCCCATTGTGTGTGCAAGCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: PKESTVGCHTSP*EYVFPLCVQAF Trigger: AAAAGCTTGCACACACAATGGGAAGACATACTCCCATGGGGAGGTGTGGCACCCCACTGTGCTCTCCTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 |
||
| CDS TCA 72 bp | CAAGATAATCTTGATGGTTGTGCTGCCCATTCCTACTaGCTGGAAGTGGCGAGGGATGAAGCCCAGAGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: QDNLDGCAAHSY*LEVARDEAQRG Trigger: TCCCCTCTGGGCTTCATCCCTCGCCACTTCCAGTCAGTAGGAATGGGCAGCACAACCATCAAGATTATCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CAA 90 bp | CTCCATGCTGCAGCTGTGTCAAGTTTTCTTCTGTGGAACTCTCAGTaGTCCTGTCTTTGCAGGTCTGACAGCAGGAATCAGGCAGAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: LHAAAVSSFLLWNSQ*SCLCRSDSRNQAEG Trigger: TCCCTCTGCCTGATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGAAGAAAACTTGACACAGCTGCAGCATGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS GCA 72 bp | AGTTTTCTTCTGTGGAACTCTCAGTTGTCCTGTCTTTaGAGGTCTGACAGCAGGAATCAGGCAGAGGGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: SFLLWNSQLSCL*RSDSRNQAEGV Trigger: CACTCCCTCTGCCTGATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGAAGAAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 72 bp | TCTCTCCATGCTGCAGCTGTGTCAAGTTTTCTTCTGTaGAACTCTCAGTTGTCCTGTCTTTGCAGGTCTGAC | + |
|
Preference number: 6 (lower is better) Translates to: SLHAAAVSSFLL*NSQLSCLCRSD Trigger: GTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGAAGAAAACTTGACACAGCTGCAGCATGGAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CCA 72 bp | ATTCCTTTCACCAGCTTCCAAATGTACATCTCTACCTaGTCAGAGGCTTCATGCTCCAGGACAAAGCGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: IPFTSFQMYIST*SEASCSRTKRC Trigger: ACACCGCTTTGTCCTGGAGCATGAAGCCTCTGACCAGGTAGAGATGTACATTTGGAAGCTGGTGAAAGGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS CAA 72 bp | GCAGCTGTGTCAAGTTTTCTTCTGTGGAACTCTCAGTaGTCCTGTCTTTGCAGGTCTGACAGCAGGAATCAG | + |
|
Preference number: 6 (lower is better) Translates to: AAVSSFLLWNSQ*SCLCRSDSRNQ Trigger: CTGATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGAAGAAAACTTGACACAGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032977.11 ENSMUST00000107084.8 ENSMUST00000144808.2 |
||
| CDS TCA 72 bp | TGCCCGAGCGAGCAAACAAACTTGGCTGAGACACAATaGAGAACTCCTGAATACAAGAATGCGCAACAGGTT | + |
|
Preference number: 6 (lower is better) Translates to: CPSEQTNLAETQ*RTPEYKNAQQV Trigger: AACCTGTTGCGCATTCTTGTATTCAGGAGTTCTTCATTGTGTCTCAGCCAAGTTTGTTTGCTCGCTCGGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107084.8 |
||
| CDS CCA 72 bp | GAAAAGGCAGACTTTGCCCGAGCGAGCAAACAAACTTaGCTGAGACACAATGAAGAACTCCTGAATACAAGA | + |
|
Preference number: 6 (lower is better) Translates to: EKADFARASKQT*LRHNEELLNTR Trigger: TCTTGTATTCAGGAGTTCTTCATTGTGTCTCAGCCAAGTTTGTTTGCTCGCTCGGGCAAAGTCTGCCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107084.8 |
||