Pregenerated sensors for CHRAC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068391Ensembl transcript IDs: ENSMUST00000089765.9, ENSMUST00000134353.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTGAGGTTCAGTGGTGTGTGCTACTGTACCCAAAGCCAGAGCAGTaGCATCTGCCCAGGACTCTCCCAGTGGGAGAGAGGAGATGGCTG | + |
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Preference number: 1 (lower is better) Translates to: CEVQWCVLLYPKPEQ*HLPRTLPVGERRWL Trigger: CAGCCATCTCCTCTCTCCCACTGGGAGAGTCCTGGGCAGATGGCACTGCTCTGGCTTTGGGTACAGTAGCACACACCACTGAACCTCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR GCA 90 bp | TTTCATAAACAGCAAGTGGACTGTTGTCGATCCCATCTCCTGGCTTaGACAGTGAAGGTGCTAAACGCCAGGAGCAGAGGCGGGGGCAAG | + |
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Preference number: 1 (lower is better) Translates to: FHKQQVDCCRSHLLA*TVKVLNARSRGGGK Trigger: CTTGCCCCCGCCTCTGCTCCTGGCGTTTAGCACCTTCACTGTGCAAGCCAGGAGATGGGATCGACAACAGTCCACTTGCTGTTTATGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| 3UTR TCA 90 bp | TTTAGAAAGCGAACATCAAAGGTAGCACAGTATGCATGTAGTCTGTaGGAACAGTGTGTCCACGCGACTACACAGCTGCCAGGGAGCTTC | + |
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Preference number: 1 (lower is better) Translates to: FRKRTSKVAQYACSL*EQCVHATTQLPGSF Trigger: GAAGCTCCCTGGCAGCTGTGTAGTCGCGTGGACACACTGTTCTCACAGACTACATGCATACTGTGCTACCTTTGATGTTCGCTTTCTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR-3UTR TCA 90 bp | CCACGCGACTACACAGCTGCCAGGGAGCTTCCCAGGTCTGCCCTGCAAGTTCAAGAGAGAGGAGATGGCTaGAGGGCCTGTAGAGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: PRDYTAARELPRSALQVQERGDG*RACRGG Trigger: GCCTCCTCTACAGGCCCTTCAGCCATCTCCTCTCTC...TTGAACTTGCAGGGCAGACCTGGGAAGCTCCCTGGCAGCTGTGTAGTCGCGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR-3UTR GCA 90 bp | TCAGTGGTGTGTGCTACTGTACCCAAAGCCAGAGCAGTGCCATCTGCCCAGGACCTGTTAGTCTGTCCTTaGATGTGCTCACAGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: SVVCATVPKARAVPSAQDLLVCP*MCSQDR Trigger: CCTGTCCTGTGAGCACATGCAAGGACAGACTAACAG...GTCCTGGGCAGATGGCACTGCTCTGGCTTTGGGTACAGTAGCACACACCACTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR GCA 72 bp | GTGTGCTACTGTACCCAAAGCCAGAGCAGTGCCATCTaGCCAGGACTCTCCCAGTGGGAGAGAGGAGATGGC | + |
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Preference number: 3 (lower is better) Translates to: VCYCTQSQSSAI*PGLSQWERGDG Trigger: GCCATCTCCTCTCTCCCACTGGGAGAGTCCTGGGCAGATGGCACTGCTCTGGCTTTGGGTACAGTAGCACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR GCA 72 bp | CAGTGGTGTGTGCTACTGTACCCAAAGCCAGAGCAGTaGCATCTGCCCAGGACTCTCCCAGTGGGAGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: QWCVLLYPKPEQ*HLPRTLPVGER Trigger: CCTCTCTCCCACTGGGAGAGTCCTGGGCAGATGGCACTGCTCTGGCTTTGGGTACAGTAGCACACACCACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR GCA 72 bp | CAGCAAGTGGACTGTTGTCGATCCCATCTCCTGGCTTaGACAGTGAAGGTGCTAAACGCCAGGAGCAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: QQVDCCRSHLLA*TVKVLNARSRG Trigger: GCCTCTGCTCCTGGCGTTTAGCACCTTCACTGTGCAAGCCAGGAGATGGGATCGACAACAGTCCACTTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| 3UTR TCA 72 bp | CAGGGAGCTTCCCAGGTCTGCCCTGCAAGTTCAATGTaGGGTTCAGTGGTGTGTGCTACTGTACCCAAAGCC | + |
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Preference number: 3 (lower is better) Translates to: QGASQVCPASSM*GSVVCATVPKA Trigger: GGCTTTGGGTACAGTAGCACACACCACTGAACCTCACATTGAACTTGCAGGGCAGACCTGGGAAGCTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR GCA 72 bp | CCCTTCACTTCGCAGCTGTTAGTCTGTCCTTGCATGTaGTCACAGGACAGGATGAGAGCTCTTCTTGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: PFTSQLLVCPCM*SQDRMRALLAG Trigger: GCCAGCAAGAAGAGCTCTCATCCTGTCCTGTGAGCACATGCAAGGACAGACTAACAGCTGCGAAGTGAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| 3UTR TCA 72 bp | CGAACATCAAAGGTAGCACAGTATGCATGTAGTCTGTaGGAACAGTGTGTCCACGCGACTACACAGCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: RTSKVAQYACSL*EQCVHATTQLP Trigger: TGGCAGCTGTGTAGTCGCGTGGACACACTGTTCTCACAGACTACATGCATACTGTGCTACCTTTGATGTTCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR CCA 90 bp | TCACGGTTGTCTGGAGGCCAGGCCGGAGGCGGGGAGGATGTGCACGATGCGGCAGTCTGTAGGAACAGGTaGCTAGGTACTGAACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SRLSGGQAGGGEDVHDAAVCRNR*LGTEQR Trigger: TCTTTGTTCAGTACCTAGCCACCTGTTCCTACAGAC...TGCCGCATCGTGCACATCCTCCCCGCCTCCGGCCTGGCCTCCAGACAACCGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| CDS-3UTR TCA 90 bp | CTGCCAGGGAGCTTCCCAGGTCTGCCCTGCAAGTTCAATGTGAGGTTCAGTGGTCAGGTGGCTAGGTACTaGACAAAGAGCTCCGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LPGSFPGLPCKFNVRFSGQVARY*TKSSVA Trigger: GGCCACGGAGCTCTTTGTTCAGTACCTAGCCACCTG...ACCACTGAACCTCACATTGAACTTGCAGGGCAGACCTGGGAAGCTCCCTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR GCA 90 bp | TACACAGCTGCCAGGGAGCTTCCCAGGTCTGCCCTGCAAGTTCAATGTGAGGTTCCGAGTCCTCTGCAGTaGTGGCTAAGTCGCTGTACG | + |
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Preference number: 4 (lower is better) Translates to: YTAARELPRSALQVQCEVPSPLQ*WLSRCT Trigger: CGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGG...AACCTCACATTGAACTTGCAGGGCAGACCTGGGAAGCTCCCTGGCAGCTGTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR CCA 90 bp | GTTAGTCTGTCCTTGCATGTGCTCACAGGACAGGATGAGAGCTCTTCTTGCTGGAGCACCAGCGCCTCCTaGTTGATGCTCGACACCTCG | + |
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Preference number: 4 (lower is better) Translates to: VSLSLHVLTGQDESSSCWSTSAS*LMLDTS Trigger: CGAGGTGTCGAGCATCAACCAGGAGGCGCTGGTGCT...CCAGCAAGAAGAGCTCTCATCCTGTCCTGTGAGCACATGCAAGGACAGACTAAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR CCA 90 bp | AAAGCCAGAGCAGTGCCATCTGCCCAGGACTCTCCCAGTGGGAGAGAGGAGATGACGTCAGTGCTTTCTTaGCTTTGCCACTTCCGTGTC | + |
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Preference number: 4 (lower is better) Translates to: KARAVPSAQDSPSGREEMTSVLS*LCHFRV Trigger: GACACGGAAGTGGCAAAGCCAAGAAAGCACTGACGT...CATCTCCTCTCTCCCACTGGGAGAGTCCTGGGCAGATGGCACTGCTCTGGCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR TCA 90 bp | AAACAGCAAGTGGACTGTTGTCGATCCCATCTCCTGGCTTGCACAGTGAAGGTGCAGGTGGCTAGGTACTaGACAAAGAGCTCCGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: KQQVDCCRSHLLACTVKVQVARY*TKSSVA Trigger: GGCCACGGAGCTCTTTGTTCAGTACCTAGCCACCTG...CACCTTCACTGTGCAAGCCAGGAGATGGGATCGACAACAGTCCACTTGCTGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| CDS-3UTR GCA 90 bp | CATAAACAGCAAGTGGACTGTTGTCGATCCCATCTCCTGGCTTGCACAGTGAAGCCGAGTCCTCTGCAGTaGTGGCTAAGTCGCTGTACG | + |
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Preference number: 4 (lower is better) Translates to: HKQQVDCCRSHLLACTVKPSPLQ*WLSRCT Trigger: CGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGG...CTTCACTGTGCAAGCCAGGAGATGGGATCGACAACAGTCCACTTGCTGTTTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| CDS-3UTR CCA 90 bp | TCTTTCATAAACAGCAAGTGGACTGTTGTCGATCCCATCTCCTGGCTTGCACAGAGCACCAGCGCCTCCTaGTTGATGCTCGACACCTCG | + |
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Preference number: 4 (lower is better) Translates to: SFINSKWTVVDPISWLAQSTSAS*LMLDTS Trigger: CGAGGTGTCGAGCATCAACCAGGAGGCGCTGGTGCT...CTGTGCAAGCCAGGAGATGGGATCGACAACAGTCCACTTGCTGTTTATGAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| 3UTR CAA 72 bp | TGCAGTGCCCTTCACTTCGCAGCTGTTAGTCTGTCCTaGCATGTGCTCACAGGACAGGATGAGAGCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: CSALHFAAVSLS*HVLTGQDESSS Trigger: AGAAGAGCTCTCATCCTGTCCTGTGAGCACATGCAAGGACAGACTAACAGCTGCGAAGTGAAGGGCACTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR CCA 90 bp | TCAGTGGTGTGTGCTACTGTACCCAAAGCCAGAGCAGTGCCATCTGCCCAGGACGTCTGTAGGAACAGGTaGCTAGGTACTGAACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SVVCATVPKARAVPSAQDVCRNR*LGTEQR Trigger: TCTTTGTTCAGTACCTAGCCACCTGTTCCTACAGAC...GTCCTGGGCAGATGGCACTGCTCTGGCTTTGGGTACAGTAGCACACACCACTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR TCA 90 bp | CACTTCGCAGCTGTTAGTCTGTCCTTGCATGTGCTCACAGGACAGGATGAGAGCCTTCCCTCTTCTCTTTaGGCATTTTCAGGTACTTAC | + |
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Preference number: 4 (lower is better) Translates to: HFAAVSLSLHVLTGQDESLPSSL*AFSGTY Trigger: GTAAGTACCTGAAAATGCTCAAAGAGAAGAGGGAAG...GCTCTCATCCTGTCCTGTGAGCACATGCAAGGACAGACTAACAGCTGCGAAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS GCA 90 bp | AGGAACACTCTGCGAGAAACTGAAGTGTCTCCGAGTCCTCTGCAGTaGTGGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTTTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RNTLRETEVSPSPLQ*WLSRCTSVLSWLCH Trigger: GTGGCAAAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGGAGACACTTCAGTTTCTCGCAGAGTGTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| CDS GCA 90 bp | CTGCAGTGCTGGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTTTaGCACTTCCGTGTCTGTAGGAACAGGTGGCTAGGTACTGAACAA | + |
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Preference number: 5 (lower is better) Translates to: LQCWLSRCTSVLSWL*HFRVCRNRWLGTEQ Trigger: TTGTTCAGTACCTAGCCACCTGTTCCTACAGACACGGAAGTGGCAAAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089765.9 ENSMUST00000134353.2 |
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| CDS CCA 90 bp | AACACTCTGCGAGAAACTGAAGTGTCTCCGAGTCCTCTGCAGTGCTaGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTTTGCCACTTC | + |
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Preference number: 5 (lower is better) Translates to: NTLRETEVSPSPLQC*LSRCTSVLSWLCHF Trigger: GAAGTGGCAAAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGGAGACACTTCAGTTTCTCGCAGAGTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134353.2 |
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| CDS GCA 90 bp | GTAATATATCTGCGAGAAACTGAAGTGTCTCCGAGTCCTCTGCAGTaGTGGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTTTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: VIYLRETEVSPSPLQ*WLSRCTSVLSWLCH Trigger: GTGGCAAAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGGAGACACTTCAGTTTCTCGCAGATATATTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS CCA 90 bp | ATATATCTGCGAGAAACTGAAGTGTCTCCGAGTCCTCTGCAGTGCTaGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTTTGCCACTTC | + |
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Preference number: 5 (lower is better) Translates to: IYLRETEVSPSPLQC*LSRCTSVLSWLCHF Trigger: GAAGTGGCAAAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGGAGACACTTCAGTTTCTCGCAGATATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS-3UTR CAA 90 bp | GTTAGTCTGTCCTTGCATGTGCTCACAGGACAGGATGAGAGCTCTTCTTGCTGGTCTTCCCTCTTCTCTTaGAGCATTTTCAGGTACTTA | + |
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Preference number: 5 (lower is better) Translates to: VSLSLHVLTGQDESSSCWSSLFS*SIFRYL Trigger: TAAGTACCTGAAAATGCTCAAAGAGAAGAGGGAAGA...CCAGCAAGAAGAGCTCTCATCCTGTCCTGTGAGCACATGCAAGGACAGACTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089765.9 |
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| CDS GCA 72 bp | CTGCGAGAAACTGAAGTGTCTCCGAGTCCTCTGCAGTaGTGGCTAAGTCGCTGTACGTCAGTGCTTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LRETEVSPSPLQ*WLSRCTSVLSW Trigger: CCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGGAGACACTTCAGTTTCTCGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089765.9 ENSMUST00000134353.2 |
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| CDS CCA 72 bp | TCTTGGCTTTGCCACTTCCGTGTCTGTAGGAACAGGTaGCTAGGTACTGAACAAAGAGCTCCGTGGCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SWLCHFRVCRNR*LGTEQRAPWPW Trigger: CCAAGGCCACGGAGCTCTTTGTTCAGTACCTAGCCACCTGTTCCTACAGACACGGAAGTGGCAAAGCCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089765.9 ENSMUST00000134353.2 |
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| CDS GCA 72 bp | TGGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTTTaGCACTTCCGTGTCTGTAGGAACAGGTGGCTAGGT | + |
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Preference number: 6 (lower is better) Translates to: WLSRCTSVLSWL*HFRVCRNRWLG Trigger: ACCTAGCCACCTGTTCCTACAGACACGGAAGTGGCAAAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089765.9 ENSMUST00000134353.2 |
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| CDS CCA 72 bp | CGAGAAACTGAAGTGTCTCCGAGTCCTCTGCAGTGCTaGCTAAGTCGCTGTACGTCAGTGCTTTCTTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: RETEVSPSPLQC*LSRCTSVLSWL Trigger: AAGCCAAGAAAGCACTGACGTACAGCGACTTAGCCAGCACTGCAGAGGACTCGGAGACACTTCAGTTTCTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089765.9 ENSMUST00000134353.2 |
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