RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030865

Ensembl transcript IDs: ENSMUST00000033152.5

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATGTTCCATTCCCCTGGAGATAGAGAAAAGACCCAGCTGGGTCAATaGTGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTCTTCCTC +
Preference number: 1 (lower is better)
Translates to: MFHSPGDREKTQLGQ*CCLVGISGVRQLFL
Trigger: GAGGAAGAGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCATCATTGACCCAGCTGGGTCTTTTCTCTATCTCCAGGGGAATGGAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR TCA 90 bp TCACTTTGGGTTGGCCTTTCAGCCACTTGCAACCAAATCACTGAGTaGTTCACAAATCTGAGAGCAAATGAGACTTCAGCACACATTCTT +
Preference number: 1 (lower is better)
Translates to: SLWVGLSATCNQITE*FTNLRANETSAHIL
Trigger: AAGAATGTGTGCTGAAGTCTCATTTGCTCTCAGATTTGTGAATCACTCAGTGATTTGGTTGCAAGTGGCTGAAAGGCCAACCCAAAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR-3UTR GCA 90 bp CTGAGAGCAAATGAGACTTCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTTGGCTTGTGGGATCCTaGCTCCAGGGGACCCAGGTA +
Preference number: 2 (lower is better)
Translates to: LRANETSAHILPTSFPSPWLVGS*LQGTQV
Trigger: TACCTGGGTCCCCTGGAGGCAGGATCCCACAAGCCA...AGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGAAGTCTCATTTGCTCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR-3UTR TCA 90 bp GACCCAGCTGGGTCAATGATGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTGCTGAGAACCCCAGGTaGCAAAACTCAATTCTGGTG +
Preference number: 2 (lower is better)
Translates to: DPAGSMMLLGWHFWSKTTAENPR*QNSILV
Trigger: CACCAGAATTGAGTTTTGTCACCTGGGGTTCTCAGC...AGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCATCATTGACCCAGCTGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR CCA 72 bp TGTTCCATTCCCCTGGAGATAGAGAAAAGACCCAGCTaGGTCAATGATGCTGCTTGGTTGGCATTTCTGGAG +
Preference number: 3 (lower is better)
Translates to: CSIPLEIEKRPS*VNDAAWLAFLE
Trigger: CTCCAGAAATGCCAACCAAGCAGCATCATTGACCCAGCTGGGTCTTTTCTCTATCTCCAGGGGAATGGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR-3UTR CAA 90 bp TGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTCTTCCTCTGGGTTAGTGTGAAAGTAGAATATGGCTaGTGGGATCCTGCCTCCAGG +
Preference number: 3 (lower is better)
Translates to: CCLVGISGVRQLFLWVSVKVEYG*WDPASR
Trigger: CCTGGAGGCAGGATCCCACAAGCCATATTCTACTTT...CACACTAACCCAGAGGAAGAGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR TCA 72 bp TCCCCTGGAGATAGAGAAAAGACCCAGCTGGGTCAATaGTGCTGCTTGGTTGGCATTTCTGGAGTAAGACAA +
Preference number: 3 (lower is better)
Translates to: SPGDREKTQLGQ*CCLVGISGVRQ
Trigger: TTGTCTTACTCCAGAAATGCCAACCAAGCAGCATCATTGACCCAGCTGGGTCTTTTCTCTATCTCCAGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR CCA 72 bp AGAAAAGACCCAGCTGGGTCAATGATGCTGCTTGGTTaGCATTTCTGGAGTAAGACAACTCTTCCTCTGGGT +
Preference number: 3 (lower is better)
Translates to: RKDPAGSMMLLG*HFWSKTTLPLG
Trigger: ACCCAGAGGAAGAGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCATCATTGACCCAGCTGGGTCTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
3UTR TCA 72 bp GTTGGCCTTTCAGCCACTTGCAACCAAATCACTGAGTaGTTCACAAATCTGAGAGCAAATGAGACTTCAGCA +
Preference number: 3 (lower is better)
Translates to: VGLSATCNQITE*FTNLRANETSA
Trigger: TGCTGAAGTCTCATTTGCTCTCAGATTTGTGAATCACTCAGTGATTTGGTTGCAAGTGGCTGAAAGGCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CCA 90 bp AGAATATGGCTTGTGGGATCCTGCCTCCAGGGGACCCAGGTAGGTAAATCCCAAAGAGGCGGAGCAGGCTaGCTTGCGAGAAGCCTGTCT +
Preference number: 4 (lower is better)
Translates to: RIWLVGSCLQGTQVGKSQRGGAG*LARSLS
Trigger: AGACAGGCTTCTCGCAAGCCAGCCTGCTCCGCCTCT...TTGGGATTTACCTACCTGGGTCCCCTGGAGGCAGGATCCCACAAGCCATATTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR GCA 90 bp TGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTCTTCCTCTGGGTTAGTGTGCGGAGCAGGCTGGCTTaGGAGAAGCCTGTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: CCLVGISGVRQLFLWVSVRSRLA*EKPVSL
Trigger: CAGAGAGACAGGCTTCTCGCAAGCCAGCCTGCTCCG...CACACTAACCCAGAGGAAGAGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CCA 90 bp TGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTCTTCCTCTGGGTTAGTGTGTGCTCATCCGTCACCTaGACCCCAACCATGAGGCGG +
Preference number: 4 (lower is better)
Translates to: CCLVGISGVRQLFLWVSVCSSVT*TPTMRR
Trigger: CCGCCTCATGGTTGGGGTCCAGGTGACGGATGAGCA...CACACTAACCCAGAGGAAGAGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CCA 90 bp AGAGCAAATGAGACTTCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTAAGGGGGTTCAGGTTGCTTaGGGTCTCGGAGTGTGGCAT +
Preference number: 4 (lower is better)
Translates to: RANETSAHILPTSFPSPKGVQVA*GLGVWH
Trigger: ATGCCACACTCCGAGACCCCAAGCAACCTGAACCCC...CTTAGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGAAGTCTCATTTGCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR TCA 90 bp TCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTAAGCAAAGTTTCAAAGTACCTGGACCCCAACCATaGGGCGGAGAACCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: SAHILPTSFPSPKQSFKVPGPQP*GGEPVA
Trigger: TGCTACAGGTTCTCCGCCTCATGGTTGGGGTCCAGG...TACTTTGAAACTTTGCTTAGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR TCA 90 bp CTGAGAGCAAATGAGACTTCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTTCTCTAAGGACTTGGTaGACTCCAGGAAGGACACAG +
Preference number: 4 (lower is better)
Translates to: LRANETSAHILPTSFPSPSLRTW*TPGRTQ
Trigger: CTGTGTCCTTCCTGGAGTTCACCAAGTCCTTAGAGA...AGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGAAGTCTCATTTGCTCTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CCA 90 bp CTGAGAGCAAATGAGACTTCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTGTAGCATTTCATTCCTaGAGATCTTCCCATCCCGAT +
Preference number: 4 (lower is better)
Translates to: LRANETSAHILPTSFPSPVAFHS*RSSHPD
Trigger: ATCGGGATGGGAAGATCTCCAGGAATGAAATGCTAC...AGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGAAGTCTCATTTGCTCTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR TCA 90 bp TCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTAAGCAAAGTTTCAAAGTAGCGAAATACAGTCTCTaGCTTCCGTTGGGGAAGAAG +
Preference number: 4 (lower is better)
Translates to: SAHILPTSFPSPKQSFKVAKYSL*LPLGKK
Trigger: CTTCTTCCCCAACGGAAGTCAGAGACTGTATTTCGC...TACTTTGAAACTTTGCTTAGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR GCA 90 bp ACCACCTCTCACTCTATGCTAAGACTTCAGGCATTATTTCAAGGTTTTGGAATTAGAAGCCTGTCTCTCTaGGAATGTGCTCCACGTCTG +
Preference number: 4 (lower is better)
Translates to: TTSHSMLRLQALFQGFGIRSLSL*ECAPRL
Trigger: CAGACGTGGAGCACATTCGCAGAGAGACAGGCTTCT...AATTCCAAAACCTTGAAATAATGCCTGAAGTCTTAGCATAGAGTGAGAGGTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR GCA 90 bp GACCCAGCTGGGTCAATGATGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTATCATAGAGCTGAAATaGAAAGCGCAGTTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: DPAGSMMLLGWHFWSKTTIIELK*KAQFVH
Trigger: ATGAACAAACTGCGCTTTGCATTTCAGCTCTATGAT...AGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCATCATTGACCCAGCTGGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CCA 90 bp CATCCCTGTCCAGGGCTTGGAACCGGTGGTAGAGGCGGAGCAGGCTaGCTTGCGAGAAGCCTGTCTCTCTGCGAATGTGCTCCACGTCTG +
Preference number: 5 (lower is better)
Translates to: HPCPGLGTGGRGGAG*LARSLSLCECAPRL
Trigger: CAGACGTGGAGCACATTCGCAGAGAGACAGGCTTCTCGCAAGCCAGCCTGCTCCGCCTCTACCACCGGTTCCAAGCCCTGGACAGGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 90 bp TCCTCATCAGCTTCCTGCACTGTACGGTCTGTGATGCTCTCCAGCTaGTCATCCGTCACCTGGACCCCAACCATGAGGCGGAGAACCTGT +
Preference number: 5 (lower is better)
Translates to: SSSASCTVRSVMLSS*SSVTWTPTMRRRTC
Trigger: ACAGGTTCTCCGCCTCATGGTTGGGGTCCAGGTGACGGATGAGCAGCTGGAGAGCATCACAGACCGTACAGTGCAGGAAGCTGATGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CAA 90 bp TGCTGCTTGGTTGGCATTTCTGGAGTAAGACAACTCTTCCTCTGGGTTAGTGTGAGGGGTTCAGGTTGCTaGGGGTCTCGGAGTGTGGCA +
Preference number: 5 (lower is better)
Translates to: CCLVGISGVRQLFLWVSVRGSGC*GSRSVA
Trigger: TGCCACACTCCGAGACCCCAAGCAACCTGAACCCCT...CACACTAACCCAGAGGAAGAGTTGTCTTACTCCAGAAATGCCAACCAAGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CAA 90 bp GCAAATGAGACTTCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTAAGCAAATCCCTGTCCAGGGCTaGGAACCGGTGGTAGAGGCG +
Preference number: 5 (lower is better)
Translates to: ANETSAHILPTSFPSPKQIPVQG*EPVVEA
Trigger: CGCCTCTACCACCGGTTCCAAGCCCTGGACAGGGAT...TTGCTTAGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGAAGTCTCATTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 90 bp GATCCAGATCATAGAGCTGAAATGCAAAGCGCAGTTTGTTCATTCTaGTGTTTAGGGGTTCAGGTTGCTTGGGGTCTCGGAGTGTGGCAT +
Preference number: 5 (lower is better)
Translates to: DPDHRAEMQSAVCSF*CLGVQVAWGLGVWH
Trigger: ATGCCACACTCCGAGACCCCAAGCAACCTGAACCCCTAAACAGCAGAATGAACAAACTGCGCTTTGCATTTCAGCTCTATGATCTGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 90 bp TTCTTCATCTATAGGTCGAAAATAAGCCAGGACCCTGGCAAAGCCTaGGAAATACAGTCTCTGACTTCCGTTGGGGAAGAAGCTGTCTAT +
Preference number: 5 (lower is better)
Translates to: FFIYRSKISQDPGKA*EIQSLTSVGEEAVY
Trigger: ATAGACAGCTTCTTCCCCAACGGAAGTCAGAGACTGTATTTCGCAGGCTTTGCCAGGGTCCTGGCTTATTTTCGACCTATAGATGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS-3UTR CAA 90 bp AGAGCAAATGAGACTTCAGCACACATTCTTCCAACTTCCTTTCCTAGCCCTAAGCCGGATGCTCATTTTTaGTTCGATGTTCATCTTCTC +
Preference number: 5 (lower is better)
Translates to: RANETSAHILPTSFPSPKPDAHF*FDVHLL
Trigger: GAGAAGATGAACATCGAACAAAAAATGAGCATCCGG...CTTAGGGCTAGGAAAGGAAGTTGGAAGAATGTGTGCTGAAGTCTCATTTGCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CCA 72 bp CCAGGGCTTGGAACCGGTGGTAGAGGCGGAGCAGGCTaGCTTGCGAGAAGCCTGTCTCTCTGCGAATGTGCT +
Preference number: 6 (lower is better)
Translates to: PGLGTGGRGGAG*LARSLSLCECA
Trigger: AGCACATTCGCAGAGAGACAGGCTTCTCGCAAGCCAGCCTGCTCCGCCTCTACCACCGGTTCCAAGCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CAA 72 bp GGCTTGGAACCGGTGGTAGAGGCGGAGCAGGCTGGCTaGCGAGAAGCCTGTCTCTCTGCGAATGTGCTCCAC +
Preference number: 6 (lower is better)
Translates to: GLEPVVEAEQAG*REACLSANVLH
Trigger: GTGGAGCACATTCGCAGAGAGACAGGCTTCTCGCAAGCCAGCCTGCTCCGCCTCTACCACCGGTTCCAAGCC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CAA 90 bp CCTGTCCAGGGCTTGGAACCGGTGGTAGAGGCGGAGCAGGCTGGCTaGCGAGAAGCCTGTCTCTCTGCGAATGTGCTCCACGTCTGGAAT +
Preference number: 6 (lower is better)
Translates to: PVQGLEPVVEAEQAG*REACLSANVLHVWN
Trigger: ATTCCAGACGTGGAGCACATTCGCAGAGAGACAGGCTTCTCGCAAGCCAGCCTGCTCCGCCTCTACCACCGGTTCCAAGCCCTGGACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 72 bp GCTTCCTGCACTGTACGGTCTGTGATGCTCTCCAGCTaGTCATCCGTCACCTGGACCCCAACCATGAGGCGG +
Preference number: 6 (lower is better)
Translates to: ASCTVRSVMLSS*SSVTWTPTMRR
Trigger: CCGCCTCATGGTTGGGGTCCAGGTGACGGATGAGCAGCTGGAGAGCATCACAGACCGTACAGTGCAGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 72 bp CGGTCACCCAGTGGATTCACAGCCAGTGCTCCGATCTaGTGGAGGTCTAGGCGGCTTAGGAAGCCCTTTTCA +
Preference number: 6 (lower is better)
Translates to: RSPSGFTASAPI*WRSRRLRKPFS
Trigger: TGAAAAGGGCTTCCTAAGCCGCCTAGACCTCCAGCAGATCGGAGCACTGGCTGTGAATCCACTGGGTGACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CCA 72 bp TCACCCAGTGGATTCACAGCCAGTGCTCCGATCTGCTaGAGGTCTAGGCGGCTTAGGAAGCCCTTTTCATCC +
Preference number: 6 (lower is better)
Translates to: SPSGFTASAPIC*RSRRLRKPFSS
Trigger: GGATGAAAAGGGCTTCCTAAGCCGCCTAGACCTCCAGCAGATCGGAGCACTGGCTGTGAATCCACTGGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS TCA 72 bp TCTCCAGCTGCTCATCCGTCACCTGGACCCCAACCATaGGGCGGAGAACCTGTAGCATTTCATTCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: SPAAHPSPGPQP*GGEPVAFHSWR
Trigger: TCTCCAGGAATGAAATGCTACAGGTTCTCCGCCTCATGGTTGGGGTCCAGGTGACGGATGAGCAGCTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CCA 72 bp GTTGGGGAAGAAGCTGTCTATAATGCGGTCACCCAGTaGATTCACAGCCAGTGCTCCGATCTGCTGGAGGTC +
Preference number: 6 (lower is better)
Translates to: VGEEAVYNAVTQ*IHSQCSDLLEV
Trigger: GACCTCCAGCAGATCGGAGCACTGGCTGTGAATCCACTGGGTGACCGCATTATAGACAGCTTCTTCCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS TCA 72 bp GCCAGGACCCTGGCAAAGCCTGCGAAATACAGTCTCTaGCTTCCGTTGGGGAAGAAGCTGTCTATAATGCGG +
Preference number: 6 (lower is better)
Translates to: ARTLAKPAKYSL*LPLGKKLSIMR
Trigger: CCGCATTATAGACAGCTTCTTCCCCAACGGAAGTCAGAGACTGTATTTCGCAGGCTTTGCCAGGGTCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 72 bp CGCAGTTTGTTCATTCTGCTGTTTAGGGGTTCAGGTTaGTTGGGGTCTCGGAGTGTGGCATCTTCTTCATCT +
Preference number: 6 (lower is better)
Translates to: RSLFILLFRGSG*LGSRSVASSSS
Trigger: AGATGAAGAAGATGCCACACTCCGAGACCCCAAGCAACCTGAACCCCTAAACAGCAGAATGAACAAACTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS GCA 72 bp TATAGGTCGAAAATAAGCCAGGACCCTGGCAAAGCCTaGGAAATACAGTCTCTGACTTCCGTTGGGGAAGAA +
Preference number: 6 (lower is better)
Translates to: YRSKISQDPGKA*EIQSLTSVGEE
Trigger: TTCTTCCCCAACGGAAGTCAGAGACTGTATTTCGCAGGCTTTGCCAGGGTCCTGGCTTATTTTCGACCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5
CDS CAA 72 bp AGTTTGTTCATTCTGCTGTTTAGGGGTTCAGGTTGCTaGGGGTCTCGGAGTGTGGCATCTTCTTCATCTATA +
Preference number: 6 (lower is better)
Translates to: SLFILLFRGSGC*GSRSVASSSSI
Trigger: TATAGATGAAGAAGATGCCACACTCCGAGACCCCAAGCAACCTGAACCCCTAAACAGCAGAATGAACAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033152.5