Pregenerated sensors for CHP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014077Ensembl transcript IDs: ENSMUST00000014221.13, ENSMUST00000119172.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTTaGTGGCTGGTTCATTTCCCCAGACAGGATGGATGCATGGCACTC | + |
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Preference number: 1 (lower is better) Translates to: GMEGSMDIVPIQWEL*WLVHFPRQDGCMAL Trigger: GAGTGCCATGCATCCATCCTGTCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 90 bp | ATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTTGCTaGCTGGTTCATTTCCCCAGACAGGATGGATGCATGGCACTCAGC | + |
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Preference number: 1 (lower is better) Translates to: MEGSMDIVPIQWELC*LVHFPRQDGCMALS Trigger: GCTGAGTGCCATGCATCCATCCTGTCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR GCA 90 bp | GTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTGGTaGCACCAATCCTTGGCCCCATGCTTCTATGGGATCTGCGTAGTA | + |
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Preference number: 1 (lower is better) Translates to: VELGHSKTSKCHLSW*HQSLAPCFYGICVV Trigger: TACTACGCAGATCCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 90 bp | GTAACAGACACAAGGACAAAAGGACACAAGGTCACAGAAACATGGTaGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCC | + |
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Preference number: 1 (lower is better) Translates to: VTDTRTKGHKVTETW*RLDAGMEGSMDIVP Trigger: GGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCTGTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 90 bp | GAAGTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTaGTGCCACCAATCCTTGGCCCCATGCTTCTATGGGATCTGCGTA | + |
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Preference number: 1 (lower is better) Translates to: EVELGHSKTSKCHLS*CHQSLAPCFYGICV Trigger: TACGCAGATCCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAACTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR GCA 90 bp | CACCAAAGGCAAGTTTGTATGGACAGGAGAGACTTCAGGTTGTCATaGAAGAGCTGTAGTATTCTGGGAAAAGGGGATGACAGGATGGGG | + |
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Preference number: 1 (lower is better) Translates to: HQRQVCMDRRDFRLS*KSCSILGKGDDRMG Trigger: CCCCATCCTGTCATCCCCTTTTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 90 bp | GAAGTAACAGACACAAGGACAAAAGGACACAAGGTCACAGAAACATaGTGGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTC | + |
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Preference number: 1 (lower is better) Translates to: EVTDTRTKGHKVTET*WRLDAGMEGSMDIV Trigger: GACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCTGTTACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | CTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTATGGTGGAGGCTCGATaGAGGGATGGAAGGCAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LDAGMEGSMDIVPIQWELMVEAR*RDGRQH Trigger: ATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCAT...AAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTTGCTGGCAGTGGGAGCTTTGCTaGCTGGTTCATTTCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: AGMEGSMDIVPIQWELCWQWELC*LVHFPR Trigger: TCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTG...CCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 90 bp | AGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTaGCTGGCTGGTTCATTTCCCCAGACAGGATGGATGCATGGCACT | + |
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Preference number: 2 (lower is better) Translates to: RDGRQHGYSPHPVGA*LAGSFPQTGWMHGT Trigger: AGTGCCATGCATCCATCCTGTCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTTGCTGGCGACAGGAGGGCAGCTaGAAAACTGAATGGAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: AGMEGSMDIVPIQWELCWRQEGS*KTEWRE Trigger: TTCTCTCCATTCAGTTTTTCAGCTGCCCTCCTGTCG...CCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | AGACACAAGGACAAAAGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATGCAAGGGGATGACAGGATaGGGTGGGGCTGGAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: RHKDKRTQGHRNMVEARCKGMTG*GGAGGH Trigger: GTGTCCTCCAGCCCCACCCCATCCTGTCATCCCCTT...GCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | TGGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGCTCATATGTCCCTCATaGTCCTGCAAACACCACCAA | + |
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Preference number: 2 (lower is better) Translates to: WRLDAGMEGSMDIVPIQWLICPS*SCKHHQ Trigger: TTGGTGGTGTTTGCAGGAGCATGAGGGACATATGAG...CCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119172.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGTGGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGGGCAGCTGAAAAACTaGATGGAGAGAAGGTTGGAT | + |
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Preference number: 2 (lower is better) Translates to: MVEARCRDGRQHGYSPHPGQLKN*MERRLD Trigger: ATCCAACCTTCTCTCCATTCAGTTTTTCAGCTGCCC...TGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAGCAATACAGGGGACCAAGGGAGTCACATGCTTCCAAGAGCAGTACTGCTTGACAGGATGGATGCATaGCACTCAGCAGCTAACAGG | + |
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Preference number: 2 (lower is better) Translates to: QSNTGDQGSHMLPRAVLLDRMDA*HSAANR Trigger: CCTGTTAGCTGCTGAGTGCCATGCATCCATCCTGTC...AAGCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGTCCCCTGTATTGCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGCCCAGAGCCCAGAATCAAGTAAAATGCAGGGAATCTCAACGACAGGAGTTTCCCCAGACAGGATaGATGCATGGCACTCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: AEPRAQNQVKCRESQRQEFPQTG*MHGTQQ Trigger: CTGCTGAGTGCCATGCATCCATCCTGTCTGGGGAAA...CTCCTGTCGTTGAGATTCCCTGCATTTTACTTGATTCTGGGCTCTGGGCTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGTGGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAAGAAGGTTGGATGACTaGGAGGTAGGAAGTAACAGA | + |
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Preference number: 2 (lower is better) Translates to: MVEARCRDGRQHGYSPHPRRLDD*EVGSNR Trigger: TCTGTTACTTCCTACCTCTCAGTCATCCAACCTTCT...TGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGTGGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCACTACAAGCCTCACCATaGCCACCTTTTAAGAACATG | + |
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Preference number: 2 (lower is better) Translates to: MVEARCRDGRQHGYSPHPLQASP*PPFKNM Trigger: CATGTTCTTAAAAGGTGGTCATGGTGAGGCTTGTAG...TGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | CTACCACATTGTCAGAAGAGCCACTTGGGTGGTGACAATGTTCCAAAGAGAAGCATGGTGGAGGCTCGATaGAGGGATGGAAGGCAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LPHCQKSHLGGDNVPKRSMVEAR*RDGRQH Trigger: ATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCAT...GCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | CCCAGCCATTCCCCTGTTGCTCACCTTTACCCATCCTCTTTGCAGTGTTTTTGTAGGATGGGGTGGGGCTaGAGGACACAAGTTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: PSHSPVAHLYPSSLQCFCRMGWG*RTQVSV Trigger: AACTGAAACTTGTGTCCTCCAGCCCCACCCCATCCT...ACAAAAACACTGCAAAGAGGATGGGTAAAGGTGAGCAACAGGGGAATGGCTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | AGACACAAGGACAAAAGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATGCACCAAGGGAGTCACATaGTTCCAAGAGCAGTACTGC | + |
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Preference number: 2 (lower is better) Translates to: RHKDKRTQGHRNMVEARCTKGVT*FQEQYC Trigger: GCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGT...GCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGCCACTTGGGTGGTGACAATGTTCCAAAGAGAAGCAAACTGGCAGGCATTACAGTGGGAGCTTTGCTaGCTGGTTCATTTCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: RATWVVTMFQREANWQALQWELC*LVHFPR Trigger: TCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTG...TAATGCCTGCCAGTTTGCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | CCCAGCCATTCCCCTGTTGCTCACCTTTACCCATCCTCTTTGCAGTGTTTTTGTTTGCTGAAAAGCTCCTaGATAGGCAACGTCCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: PSHSPVAHLYPSSLQCFCLLKSS*IGNVPE Trigger: CTCTGGGACGTTGCCTATCCAGGAGCTTTTCAGCAA...ACAAAAACACTGCAAAGAGGATGGGTAAAGGTGAGCAACAGGGGAATGGCTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAAGTTTGTATGGACAGGAGAGACTTCAGGTTGTCATGCAAGAGCTGTAGTAGACAGGATGGATGCATaGCACTCAGCAGCTAACAGG | + |
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Preference number: 2 (lower is better) Translates to: GKFVWTGETSGCHARAVVDRMDA*HSAANR Trigger: CCTGTTAGCTGCTGAGTGCCATGCATCCATCCTGTC...TACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR TCA 90 bp | GTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTGGTGCCACCAAAGAAGGTTGGATGACTaGGAGGTAGGAAGTAACAGA | + |
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Preference number: 2 (lower is better) Translates to: VELGHSKTSKCHLSWCHQRRLDD*EVGSNR Trigger: TCTGTTACTTCCTACCTCTCAGTCATCCAACCTTCT...TTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | ATAACTCACCACACCACTAACTATCCTGCCACATCAGAAACAGGCTTAACAGCAATAGTCCCCATCCAGTaGGAGCTTTGCTGGCTGGTT | + |
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Preference number: 2 (lower is better) Translates to: ITHHTTNYPATSETGLTAIVPIQ*ELCWLV Trigger: AACCAGCCAGCAAAGCTCCCACTGGATGGGGACTAT...TGCTGTTAAGCCTGTTTCTGATGTGGCAGGATAGTTAGTGGTGTGGTGAGTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGTTTGTATGGACAGGAGAGACTTCAGGTTGTCATGCAAGAGCTGTAGTAGGGCAGCTGAAAAACTaGATGGAGAGAAGGTTGGAT | + |
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Preference number: 2 (lower is better) Translates to: GKFVWTGETSGCHARAVVGQLKN*MERRLD Trigger: ATCCAACCTTCTCTCCATTCAGTTTTTCAGCTGCCC...TACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | AATACAGGGGACCAAGGGAGTCACATGCTTCCAAGAGCAGTACTGCTTGCTGAACAGAATCAAGTAAAATaGAGGGAATCTCAACGACAG | + |
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Preference number: 2 (lower is better) Translates to: NTGDQGSHMLPRAVLLAEQNQVK*RESQRQ Trigger: CTGTCGTTGAGATTCCCTGCATTTTACTTGATTCTG...TTCAGCAAGCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGTCCCCTGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | GTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTGGTGCCACCAACAGAATCAAGTAAAATaGAGGGAATCTCAACGACAG | + |
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Preference number: 2 (lower is better) Translates to: VELGHSKTSKCHLSWCHQQNQVK*RESQRQ Trigger: CTGTCGTTGAGATTCCCTGCATTTTACTTGATTCTG...TTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR GCA 90 bp | ATTGGCAGAGAAGTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTGTCCCTCATGCTCCTaGAAACACCACCAATGTAAA | + |
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Preference number: 2 (lower is better) Translates to: IGREVELGHSKTSKCHLSCPSCS*KHHQCK Trigger: TTTACATTGGTGGTGTTTGCAGGAGCATGAGGGACA...ACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAACTTCTCTGCCAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | AACTGGCAGGCATTAGAATATTTTCTAATGAATGTCAACACTGTACCCAGAAAAAAGGGGATGACAGGATaGGGTGGGGCTGGAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: NWQALEYFLMNVNTVPRKKGMTG*GGAGGH Trigger: GTGTCCTCCAGCCCCACCCCATCCTGTCATCCCCTT...TTTTCTGGGTACAGTGTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | GAAACAGGCTTAACAGCAGAGCCCAGAGCCCAGAATCAAGTAAAATGCAGGGAAAAAGGCAAGTTTGTATaGACAGGAGAGACTTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: ETGLTAEPRAQNQVKCREKGKFV*TGETSG Trigger: ACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTT...TTCCCTGCATTTTACTTGATTCTGGGCTCTGGGCTCTGCTGTTAAGCCTGTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 90 bp | TTTATACACCAAAGGCAAGTTTGTATGGACAGGAGAGACTTCAGGTaGTCATGCAAGAGCTGTAGTATTCTGGGAAAAGGGGATGACAGG | + |
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Preference number: 2 (lower is better) Translates to: FIHQRQVCMDRRDFR*SCKSCSILGKGDDR Trigger: CCTGTCATCCCCTTTTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTGTATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAAACTGGCAGGCATTAGAATATTTTCTAATGAATGTCAACACTGTACCCAGAGGATGGGGTGGGGCTaGAGGACACAAGTTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: SKLAGIRIFSNECQHCTQRMGWG*RTQVSV Trigger: AACTGAAACTTGTGTCCTCCAGCCCCACCCCATCCT...CTGGGTACAGTGTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | AACTGGCAGGCATTAGAATATTTTCTAATGAATGTCAACACTGTACCCAGAAAAGCTGTAGAGCAAATGTaGCCAGCTCTCCAGGGTGCC | + |
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Preference number: 2 (lower is better) Translates to: NWQALEYFLMNVNTVPRKAVEQM*PALQGA Trigger: GGCACCCTGGAGAGCTGGCCACATTTGCTCTACAGC...TTTTCTGGGTACAGTGTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CCA 90 bp | CTACCACATTGTCAGAAGAGCCACTTGGGTGGTGACAATGTTCCAAAGAGAAGCACCTTTCTAAATAATTaGCAACCTTCTCCTCCTATG | + |
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Preference number: 2 (lower is better) Translates to: LPHCQKSHLGGDNVPKRSTFLNN*QPSPPM Trigger: CATAGGAGGAGAAGGTTGCCAATTATTTAGAAAGGT...GCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119172.2 |
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| 3UTR CAA 90 bp | CCATTCCCCTGTTGCTCACCTTTACCCATCCTCTTTGCAGTGTTTTaGTTTGTTTGGGTTAATAGCAATTTATTTACTAAAGAATTGTTT | + |
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Preference number: 2 (lower is better) Translates to: PFPCCSPLPILFAVF*FVWVNSNLFTKELF Trigger: AAACAATTCTTTAGTAAATAAATTGCTATTAACCCAAACAAACAAAAACACTGCAAAGAGGATGGGTAAAGGTGAGCAACAGGGGAATGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR GCA 72 bp | AGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATaGAGGGATGGAAGGCAGCATGGATATAGTCCCCAT | + |
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Preference number: 3 (lower is better) Translates to: RTQGHRNMVEAR*RDGRQHGYSPH Trigger: ATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 72 bp | AGCATGGATATAGTCCCCATCCAGTGGGAGCTTTGCTaGCTGGTTCATTTCCCCAGACAGGATGGATGCATG | + |
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Preference number: 3 (lower is better) Translates to: SMDIVPIQWELC*LVHFPRQDGCM Trigger: CATGCATCCATCCTGTCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 72 bp | GACACAAGGACAAAAGGACACAAGGTCACAGAAACATaGTGGAGGCTCGATGCAGGGATGGAAGGCAGCATG | + |
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Preference number: 3 (lower is better) Translates to: DTRTKGHKVTET*WRLDAGMEGSM Trigger: CATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 72 bp | CTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTaGTGCCACCAATCCTTGGCCCCATGCTTCTATGGG | + |
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Preference number: 3 (lower is better) Translates to: LGHSKTSKCHLS*CHQSLAPCFYG Trigger: CCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CAA 90 bp | GTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTGGTGCCACCAACATCCAGTGGGAGCTTaGCTGGCTGGTTCATTTCCC | + |
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Preference number: 3 (lower is better) Translates to: VELGHSKTSKCHLSWCHQHPVGA*LAGSFP Trigger: GGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATG...TTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CAA 90 bp | ATGGTGGAGGCTCGATGCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAACACCAAAGGCAAGTTaGTATGGACAGGAGAGACTT | + |
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Preference number: 3 (lower is better) Translates to: MVEARCRDGRQHGYSPHPTPKAS*YGQERL Trigger: AAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTGT...TGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 72 bp | ACAAGGACAAAAGGACACAAGGTCACAGAAACATGGTaGAGGCTCGATGCAGGGATGGAAGGCAGCATGGAT | + |
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Preference number: 3 (lower is better) Translates to: TRTKGHKVTETW*RLDAGMEGSMD Trigger: ATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR TCA 72 bp | CCCTCTACCACATTGTCAGAAGAGCCACTTGGGTGGTaGCAATGTTCCAAAGAGAAGCAAACTGGCAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: PSTTLSEEPLGW*QCSKEKQTGRH Trigger: ATGCCTGCCAGTTTGCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CAA 90 bp | CCCAGCCATTCCCCTGTTGCTCACCTTTACCCATCCTCTTTGCAGTGTTTTTGTACACCAAAGGCAAGTTaGTATGGACAGGAGAGACTT | + |
|
Preference number: 3 (lower is better) Translates to: PSHSPVAHLYPSSLQCFCTPKAS*YGQERL Trigger: AAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTGT...ACAAAAACACTGCAAAGAGGATGGGTAAAGGTGAGCAACAGGGGAATGGCTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGTGGTGACAATGTTCCAAAGAGAAGCAAACTGGCAGGCATTAGAATATTTTCATCCAGTGGGAGCTTaGCTGGCTGGTTCATTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: WVVTMFQREANWQALEYFHPVGA*LAGSFP Trigger: GGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATG...AAAATATTCTAATGCCTGCCAGTTTGCTTCTCTTTGGAACATTGTCACCACCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR TCA 72 bp | GTAAAATGCAGGGAATCTCAACGACAGGAGGGCAGCTaGAAAACTGAATGGAGAGAAGGTTGGATGACTGAG | + |
|
Preference number: 3 (lower is better) Translates to: VKCRESQRQEGS*KTEWREGWMTE Trigger: CTCAGTCATCCAACCTTCTCTCCATTCAGTTTTTCAGCTGCCCTCCTGTCGTTGAGATTCCCTGCATTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR GCA 72 bp | CAAGTTTGTATGGACAGGAGAGACTTCAGGTTGTCATaGAAGAGCTGTAGTATTCTGGGAAAAGGGGATGAC | + |
|
Preference number: 3 (lower is better) Translates to: QVCMDRRDFRLS*KSCSILGKGDD Trigger: GTCATCCCCTTTTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CCA 72 bp | ACTTGGGTGGTGACAATGTTCCAAAGAGAAGCAAACTaGCAGGCATTAGAATATTTTCTAATGAATGTCAAC | + |
|
Preference number: 3 (lower is better) Translates to: TWVVTMFQREAN*QALEYFLMNVN Trigger: GTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTTTGCTTCTCTTTGGAACATTGTCACCACCCAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | AATACAGGGGACCAAGGGAGTCACATGCTTCCAAGAGCAGTACTGCTTGCTGAATGTTGCTCCGGCTGTTaGGGGGTTCCGGGCCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: NTGDQGSHMLPRAVLLAECCSGC*GVPGHS Trigger: TGAATGGCCCGGAACCCCTCAACAGCCGGAGCAACA...TTCAGCAAGCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGTCCCCTGTATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | TATCCTGCCACATCAGAAACAGGCTTAACAGCAGAGCCCAGAGCCCAGAATCAAGGAAATCTTCCCGGCTaGGAGTCCCGTTCTCCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: YPATSETGLTAEPRAQNQGNLPG*ESRSPL Trigger: AAGGGGAGAACGGGACTCTCAGCCGGGAAGATTTCC...TTGATTCTGGGCTCTGGGCTCTGCTGTTAAGCCTGTTTCTGATGTGGCAGGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | CTTAACAGCAGAGCCCAGAGCCCAGAATCAAGTAAAATGCAGGGAATCTCAACGTGTTGCTCCGGCTGTTaGGGGGTTCCGGGCCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: LNSRAQSPESSKMQGISTCCSGC*GVPGHS Trigger: TGAATGGCCCGGAACCCCTCAACAGCCGGAGCAACA...CGTTGAGATTCCCTGCATTTTACTTGATTCTGGGCTCTGGGCTCTGCTGTTAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR GCA 90 bp | CAAAAGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATGCAGGGATGGAAGTCCTGTCCGCAATACTaGCCAGCTGCTCATCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QKDTRSQKHGGGSMQGWKSCPQY*PAAHPR Trigger: TCTCGGATGAGCAGCTGGGCAGTATTGCGGACAGGA...CTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR GCA 90 bp | AGACACAAGGACAAAAGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATGCTCCTGTCCGCAATACTaGCCAGCTGCTCATCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RHKDKRTQGHRNMVEARCSCPQY*PAAHPR Trigger: TCTCGGATGAGCAGCTGGGCAGTATTGCGGACAGGA...GCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | CTACCACATTGTCAGAAGAGCCACTTGGGTGGTGACAATGTTCCAAAGAGAAGCTACAGGCGCGTGATCTaGCTGTGGGAAAAGCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LPHCQKSHLGGDNVPKRSYRRVI*LWEKPV Trigger: GACTGGCTTTTCCCACAGTCAGATCACGCGCCTGTA...GCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | GAAACAGGCTTAACAGCAGAGCCCAGAGCCCAGAATCAAGTAAAATGCAGGGAATACAGGCGCGTGATCTaGCTGTGGGAAAAGCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: ETGLTAEPRAQNQVKCREYRRVI*LWEKPV Trigger: GACTGGCTTTTCCCACAGTCAGATCACGCGCCTGTA...TTCCCTGCATTTTACTTGATTCTGGGCTCTGGGCTCTGCTGTTAAGCCTGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | GTATGGACAGGAGAGACTTCAGGTTGTCATGCAAGAGCTGTAGTATTCTGGGAAGGAAATCTTCCCGGCTaGGAGTCCCGTTCTCCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: VWTGETSGCHARAVVFWEGNLPG*ESRSPL Trigger: AAGGGGAGAACGGGACTCTCAGCCGGGAAGATTTCC...TTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | GCAGGGATGGAAGGCAGCATGGATATAGTCCCCATCCAGTGGGAGCTTTGCTGGCCAAATCATAGAGTCTaGAAGCAAAGTGCAGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: AGMEGSMDIVPIQWELCWPNHRV*KQSAAC Trigger: ACAAGCTGCACTTTGCTTTCAGACTCTATGATTTGG...CCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 72 bp | AGAGCAAATGTGGCCAGCTCTCCAGGGTGCCTAGCCTaGTTCAGAAAACTACAAGAAGGCCCTCTACCACAT | + |
|
Preference number: 4 (lower is better) Translates to: RANVASSPGCLA*FRKLQEGPLPH Trigger: ATGTGGTAGAGGGCCTTCTTGTAGTTTTCTGAACAAGGCTAGGCACCCTGGAGAGCTGGCCACATTTGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR GCA 90 bp | GGCAGAGAAGTTGAGCTGGGTCACTCAAAGACCTCTAAATGTCACCTCAGTTGGAGTCTGAAAGCAAAGTaGAGCTTGTTGCTCCGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GREVELGHSKTSKCHLSWSLKAK*SLLLRL Trigger: CAGCCGGAGCAACAAGCTGCACTTTGCTTTCAGACT...CCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAACTTCTCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 72 bp | ACCTCTAAATGTCACCTCAGTTGGTGCCACCAATCCTaGGCCCCATGCTTCTATGGGATCTGCGTAGTATAC | + |
|
Preference number: 4 (lower is better) Translates to: TSKCHLSWCHQS*APCFYGICVVY Trigger: GTATACTACGCAGATCCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR GCA 90 bp | AAGGACAAAAGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATGCAGGGATGCAATACTGCCCAGCTaGTCATCCGAGATATTCACT | + |
|
Preference number: 4 (lower is better) Translates to: KDKRTQGHRNMVEARCRDAILPS*SSEIFT Trigger: AGTGAATATCTCGGATGAGCAGCTGGGCAGTATTGC...ATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 72 bp | CAAGAAGGCCCTCTACCACATTGTCAGAAGAGCCACTaGGGTGGTGACAATGTTCCAAAGAGAAGCAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: QEGPLPHCQKSH*GGDNVPKRSKL Trigger: CAGTTTGCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAGAGGGCCTTCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR GCA 90 bp | AGAGCCACTTGGGTGGTGACAATGTTCCAAAGAGAAGCAAACTGGCAGGCATTAGCAATACTGCCCAGCTaGTCATCCGAGATATTCACT | + |
|
Preference number: 4 (lower is better) Translates to: RATWVVTMFQREANWQALAILPS*SSEIFT Trigger: AGTGAATATCTCGGATGAGCAGCTGGGCAGTATTGC...TAATGCCTGCCAGTTTGCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | AGACACAAGGACAAAAGGACACAAGGTCACAGAAACATGGTGGAGGCTCGATGCTCAATGGGTCGGAAATaGGCCAATGTTCTCATGAAT | + |
|
Preference number: 4 (lower is better) Translates to: RHKDKRTQGHRNMVEARCSMGRK*ANVLMN Trigger: ATTCATGAGAACATTGGCTCATTTCCGACCCATTGA...GCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR TCA 90 bp | CTACCACATTGTCAGAAGAGCCACTTGGGTGGTGACAATGTTCCAAAGAGAAGCCCAAATCATAGAGTCTaGAAGCAAAGTGCAGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LPHCQKSHLGGDNVPKRSPNHRV*KQSAAC Trigger: ACAAGCTGCACTTTGCTTTCAGACTCTATGATTTGG...GCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 72 bp | CAAAGGCAAGTTTGTATGGACAGGAGAGACTTCAGGTaGTCATGCAAGAGCTGTAGTATTCTGGGAAAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: QRQVCMDRRDFR*SCKSCSILGKG Trigger: CCCTTTTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| 3UTR CAA 72 bp | ATAGCAATTTATTTACTAAAGAATTGTTTACACACCTaGGATAGCCTTCCAAAGCAACGAAGCAAGCAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: IAIYLLKNCLHT*DSLPKQRSKQA Trigger: TGCTTGCTTGCTTCGTTGCTTTGGAAGGCTATCCAAGGTGTGTAAACAATTCTTTAGTAAATAAATTGCTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR CAA 90 bp | GTATGGACAGGAGAGACTTCAGGTTGTCATGCAAGAGCTGTAGTATTCTGGGAAGGCACTATCTCCATCTaGGTCAGCCTCCTGGATGGT | + |
|
Preference number: 5 (lower is better) Translates to: VWTGETSGCHARAVVFWEGTISI*VSLLDG Trigger: ACCATCCAGGAGGCTGACCAAGATGGAGATAGTGCC...TTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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| CDS-3UTR CAA 90 bp | GTTTGTATGGACAGGAGAGACTTCAGGTTGTCATGCAAGAGCTGTAGTATTCTGGGCACTATCTCCATCTaGGTCAGCCTCCTGGATGGT | + |
|
Preference number: 5 (lower is better) Translates to: VCMDRRDFRLSCKSCSILGTISI*VSLLDG Trigger: ACCATCCAGGAGGCTGACCAAGATGGAGATAGTGCC...CAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014221.13 ENSMUST00000119172.2 |
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