Pregenerated sensors for CHORDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001774Ensembl transcript IDs: ENSMUST00000001825.9
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCTGGGCAGAGGCAAAGACAAAGGCACAGGGATCAAATTCAAAGTaGCTGACTGAGTCTACAATCTCTGCTGAACAGCTTAGTGATTTC | + |
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Preference number: 1 (lower is better) Translates to: VWAEAKTKAQGSNSK*LTESTISAEQLSDF Trigger: GAAATCACTAAGCTGTTCAGCAGAGATTGTAGACTCAGTCAGGCACTTTGAATTTGATCCCTGTGCCTTTGTCTTTGCCTCTGCCCAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR TCA 90 bp | GGGCAGAGGCAAAGACAAAGGCACAGGGATCAAATTCAAAGTGCCTaGCTGAGTCTACAATCTCTGCTGAACAGCTTAGTGATTTCAACT | + |
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Preference number: 1 (lower is better) Translates to: GQRQRQRHRDQIQSA*LSLQSLLNSLVIST Trigger: AGTTGAAATCACTAAGCTGTTCAGCAGAGATTGTAGACTCAGTCAGGCACTTTGAATTTGATCCCTGTGCCTTTGTCTTTGCCTCTGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR CCA 90 bp | TGTGAATCCTTTTCCTCACTGGTATTACAGGACAACATACTTTACTaGGAAGCCATTAGCAGTAAGTTCATATTCACCGATGTTCTTAAA | + |
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Preference number: 1 (lower is better) Translates to: CESFSSLVLQDNILY*EAISSKFIFTDVLK Trigger: TTTAAGAACATCGGTGAATATGAACTTACTGCTAATGGCTTCCCAGTAAAGTATGTTGTCCTGTAATACCAGTGAGGAAAAGGATTCACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CCA 90 bp | AATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACAATCTGAGGAGGCAGCAGTaGGAGTATGGGACAGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: NVTAESLYSQCAPKDVHNLRRQQ*EYGTEV Trigger: CACCTCTGTCCCATACTCCCACTGCTGCCTCCTCAG...ATTGTGTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR GCA 90 bp | ATACAAATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACTCAGAGATCCACCTaGCTCTGCCTCCCAAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: IQMSQLNHCTHSVLQKMYTQRST*LCLPSA Trigger: AGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGAGT...GTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATTTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR GCA 90 bp | ATACAAATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACTCTTGGAACTCACTTTaGAGACCAGGCTGGCCTCGA | + |
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Preference number: 2 (lower is better) Translates to: IQMSQLNHCTHSVLQKMYSWNSL*RPGWPR Trigger: TCGAGGCCAGCCTGGTCTGCAAAGTGAGTTCCAAGA...GTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATTTGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR TCA 90 bp | AATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACAATGTGGTTCATATGTCCTaGCTGGATCAGACCAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: NVTAESLYSQCAPKDVHNVVHMS*LDQTSK Trigger: CTTGCTGGTCTGATCCAGTCAGGACATATGAACCAC...ATTGTGTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR TCA 90 bp | AATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACAATAGAGCACAGAATAATTaGCTGATGCCCATGGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: NVTAESLYSQCAPKDVHNRAQNN*LMPMEA Trigger: GGCCTCCATGGGCATCAGTCAATTATTCTGTGCTCT...ATTGTGTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR GCA 90 bp | AATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTAAGATCCACCTGCCTCTaGCTCCCAAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: NGHKLCTTMEEYVVQSCLRSTCL*LPSAGI Trigger: AATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCT...TAGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CCA 90 bp | GAAAAACAGGTCAACTTATTACTTCCTTTGTGCAAGCAAAAGCTAGACAAGAAACTTTGCAGACCAGGCTaGCCTCGAACTCAGAGATCC | + |
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Preference number: 2 (lower is better) Translates to: EKQVNLLLPLCKQKLDKKLCRPG*PRTQRS Trigger: GGATCTCTGAGTTCGAGGCCAGCCTGGTCTGCAAAG...TTTCTTGTCTAGCTTTTGCTTGCACAAAGGAAGTAATAAGTTGACCTGTTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR TCA 90 bp | AATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACAATCACAGAATAATTGACTaGTGCCCATGGAGGCCAGAA | + |
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Preference number: 2 (lower is better) Translates to: NVTAESLYSQCAPKDVHNHRIID*CPWRPE Trigger: TTCTGGCCTCCATGGGCATCAGTCAATTATTCTGTG...ATTGTGTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR TCA 90 bp | ATACAAATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACCTTGACCAAAACACATaGCAGAAACAACTCAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: IQMSQLNHCTHSVLQKMYLDQNT*QKQLKG Trigger: TCCCTTGAGTTGTTTCTGTCATGTGTTTTGGTCAAG...GTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATTTGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CCA 90 bp | ATACAAATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACCTGCAATTATACTTATaGTTTCTTTCCCTCCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: IQMSQLNHCTHSVLQKMYLQLYL*FLSLPS Trigger: TGAAGGGAGGGAAAGAAACCATAAGTATAATTGCAG...GTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATTTGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR GCA 90 bp | AATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACAATAGACTTAAATTATACTaGTTGCCAGGTAATGCAAGT | + |
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Preference number: 2 (lower is better) Translates to: NVTAESLYSQCAPKDVHNRLKLY*LPGNAS Trigger: ACTTGCATTACCTGGCAAGCAGTATAATTTAAGTCT...ATTGTGTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR GCA 90 bp | ATACAAATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACTTATTACTTCCTTTGTaGAAGCAAAAGCTAGACAAG | + |
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Preference number: 2 (lower is better) Translates to: IQMSQLNHCTHSVLQKMYLLLPL*KQKLDK Trigger: CTTGTCTAGCTTTTGCTTGCACAAAGGAAGTAATAA...GTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATTTGTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR GCA 90 bp | AAATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTTTCATGCAAATAGGTTaGTTGCTGTATCAAAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: KWSQTMHNYGRICCAIMSFMQIG*LLYQRA Trigger: TGCTCTTTGATACAGCAAGCAACCTATTTGCATGAA...AGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CCA 90 bp | AATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTAAATAACAAAAGTTCATaGAGAGGCCAACTCAGTTTT | + |
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Preference number: 2 (lower is better) Translates to: NGHKLCTTMEEYVVQSCLNNKSS*RGQLSF Trigger: AAAACTGAGTTGGCCTCTCCATGAACTTTTGTTATT...TAGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR TCA 72 bp | CTGATGCCCATGGAGGCCAGAAGAAGGTCCTGTGTGTaGAATGAACGTGAATGCAGGGAATTGAACCCATTA | + |
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Preference number: 3 (lower is better) Translates to: LMPMEARRRSCV*NERECRELNPL Trigger: TAATGGGTTCAATTCCCTGCATTCACGTTCATTTCACACACAGGACCTTCTTCTGGCCTCCATGGGCATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR TCA 72 bp | GTTGCTTGCTGTATCAAAGAGCACAGAATAATTGACTaGTGCCCATGGAGGCCAGAAGAAGGTCCTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: VACCIKEHRIID*CPWRPEEGPVC Trigger: ACACACAGGACCTTCTTCTGGCCTCCATGGGCATCAGTCAATTATTCTGTGCTCTTTGATACAGCAAGCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR GCA 72 bp | GAGGCAAAGACAAAGGCACAGGGATCAAATTCAAAGTaGCTGACTGAGTCTACAATCTCTGCTGAACAGCTT | + |
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Preference number: 3 (lower is better) Translates to: EAKTKAQGSNSK*LTESTISAEQL Trigger: AAGCTGTTCAGCAGAGATTGTAGACTCAGTCAGGCACTTTGAATTTGATCCCTGTGCCTTTGTCTTTGCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CAA 90 bp | AATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTAGTCTTGGAACTCACTTaGCAGACCAGGCTGGCCTCG | + |
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Preference number: 3 (lower is better) Translates to: NGHKLCTTMEEYVVQSCLVLELT*QTRLAS Trigger: CGAGGCCAGCCTGGTCTGCAAAGTGAGTTCCAAGAC...TAGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CAA 90 bp | AATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACAATAAGGCAGCGCCACCATaGATGGGCAAGATCTCTTTT | + |
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Preference number: 3 (lower is better) Translates to: NVTAESLYSQCAPKDVHNKAAPP*MGKISF Trigger: AAAAGAGATCTTGCCCATCAATGGTGGCGCTGCCTT...ATTGTGTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR CCA 72 bp | TTTTCCTCACTGGTATTACAGGACAACATACTTTACTaGGAAGCCATTAGCAGTAAGTTCATATTCACCGAT | + |
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Preference number: 3 (lower is better) Translates to: FSSLVLQDNILY*EAISSKFIFTD Trigger: ATCGGTGAATATGAACTTACTGCTAATGGCTTCCCAGTAAAGTATGTTGTCCTGTAATACCAGTGAGGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CAA 90 bp | GAAAAACAGGTCAACTTATTACTTCCTTTGTGCAAGCAAAAGCTAGACAAGAAAATGCAAATAGGTTGCTaGCTGTATCAAAGAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: EKQVNLLLPLCKQKLDKKMQIGC*LYQRAQ Trigger: CTGTGCTCTTTGATACAGCAAGCAACCTATTTGCAT...TTTCTTGTCTAGCTTTTGCTTGCACAAAGGAAGTAATAAGTTGACCTGTTTTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR TCA 72 bp | ATGAATTATAAACTCAGCCAGCACACACAGACGGTTTaGCTCCACTTCAGAATTAGTACTACAAAAAGTAAC | + |
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Preference number: 3 (lower is better) Translates to: MNYKLSQHTQTV*LHFRISTTKSN Trigger: GTTACTTTTTGTAGTACTAATTCTGAAGTGGAGTCAAACCGTCTGTGTGTGCTGGCTGAGTTTATAATTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CAA 90 bp | AATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTAATTCATGCAAATAGGTaGCTTGCTGTATCAAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NGHKLCTTMEEYVVQSCLIHANR*LAVSKS Trigger: GCTCTTTGATACAGCAAGCAACCTATTTGCATGAAT...TAGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR-3UTR CAA 90 bp | AAATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTATGTTTAGTATGTTCTaGCTTCATCAAAGCCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: KWSQTMHNYGRICCAIMSMFSMF*LHQSLK Trigger: CTTCAGGCTTTGATGAAGCAAGAACATACTAAACAT...AGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR GCA 72 bp | GATGTTCTTAAAACAATGCTAGTCCATTCTGTTGTATaGCTGTCATTAACAGCTACCCAAATATGCCAAATA | + |
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Preference number: 3 (lower is better) Translates to: DVLKTMLVHSVV*LSLTATQICQI Trigger: TATTTGGCATATTTGGGTAGCTGTTAATGACAGGCATACAACAGAATGGACTAGCATTGTTTTAAGAACATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| CDS-3UTR TCA 90 bp | GAAAAACAGGTCAACTTATTACTTCCTTTGTGCAAGCAAAAGCTAGACAAGAAACTGTTGGCTTCTACTTaGCTGAGTTCTGGCAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: EKQVNLLLPLCKQKLDKKLLAST*LSSGRE Trigger: TTCCCTGCCAGAACTCAGTCAAGTAGAAGCCAACAG...TTTCTTGTCTAGCTTTTGCTTGCACAAAGGAAGTAATAAGTTGACCTGTTTTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| 3UTR CAA 72 bp | AGTAGTATCTCAGGACTCTCTCAGGACTCAGAATATTaGCAAGAACATTTTAATGGGTCTCTTCATTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: SSISGLSQDSEY*QEHFNGSLHSD Trigger: ATCAGAATGAAGAGACCCATTAAAATGTTCTTGCAAATATTCTGAGTCCTGAGAGAGTCCTGAGATACTACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| CDS-3UTR CAA 90 bp | ATACAAATGTCACAGCTGAATCATTGTACTCACAGTGTGCTCCAAAAGATGTACACTGTTGGCTTCTACTaGACTGAGTTCTGGCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: IQMSQLNHCTHSVLQKMYTVGFY*TEFWQG Trigger: TCCCTGCCAGAACTCAGTCAAGTAGAAGCCAACAGT...GTACATCTTTTGGAGCACACTGTGAGTACAATGATTCAGCTGTGACATTTGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| CDS-3UTR CAA 90 bp | AATGGTCACAAACTATGCACAACTATGGAAGAATATGTTGTGCAATCATGTCTAAGTCAGAGAAATCAGTaGTCCTTCTTTTACAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: NGHKLCTTMEEYVVQSCLSQRNQ*SFFYSK Trigger: CTTGCTGTAAAAGAAGGACAACTGATTTCTCTGACT...TAGACATGATTGCACAACATATTCTTCCATAGTTGTGCATAGTTTGTGACCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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| CDS-3UTR CAA 90 bp | GAAAAACAGGTCAACTTATTACTTCCTTTGTGCAAGCAAAAGCTAGACAAGAAATGTTTCTCCTGCTTTTaGGTTGTAGGTAGTTCAAGA | + |
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Preference number: 5 (lower is better) Translates to: EKQVNLLLPLCKQKLDKKCFSCF*VVGSSR Trigger: TCTTGAACTACCTACAACCAAAAAGCAGGAGAAACA...TTTCTTGTCTAGCTTTTGCTTGCACAAAGGAAGTAATAAGTTGACCTGTTTTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001825.9 |
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