Pregenerated sensors for CHODL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022860Ensembl transcript IDs: ENSMUST00000023568.14, ENSMUST00000069148.13, ENSMUST00000114216.2, ENSMUST00000232415.2
Found 139 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACATTTGCCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTaGGATTTCAAGCCATTCCAAGGTGATGATGCCATTCCTTACATT | + |
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Preference number: 1 (lower is better) Translates to: TFASRGSLQSILQIL*DFKPFQGDDAIPYI Trigger: AATGTAAGGAATGGCATCATCACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGGCAAATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR TCA 90 bp | GACAAAATAGTTACAACTCTCTTGAGAAGAACAAGTGCTACGTGTTaGGGAAACTCCATCAGACAGAAGGAAGCCACAGTTCACAACCAC | + |
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Preference number: 1 (lower is better) Translates to: DKIVTTLLRRTSATC*GNSIRQKEATVHNH Trigger: GTGGTTGTGAACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTTCTTCTCAAGAGAGTTGTAACTATTTTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR TCA 90 bp | GATTGGTCCACAGAAATTATATCCGCATGGTCCATTTCTTTTACATaGAATTTAGGTGTATCCTTTAGGAGAGTAACCAGGTCTCACTCA | + |
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Preference number: 1 (lower is better) Translates to: DWSTEIISAWSISFT*NLGVSFRRVTRSHS Trigger: TGAGTGAGACCTGGTTACTCTCCTAAAGGATACACCTAAATTTCATGTAAAAGAAATGGACCATGCGGATATAATTTCTGTGGACCAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR TCA 90 bp | CTTCCTAAACTTTATCGAACCCAAAGCAAAGAAACAGAACAAACATaGACTATCCTACCAAAGAAATGTTTTCCCTATGCAAGGATTTCT | + |
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Preference number: 1 (lower is better) Translates to: LPKLYRTQSKETEQT*TILPKKCFPYARIS Trigger: AGAAATCCTTGCATAGGGAAAACATTTCTTTGGTAGGATAGTTCATGTTTGTTCTGTTTCTTTGCTTTGGGTTCGATAAAGTTTAGGAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR CAA 90 bp | AGATCTGCATTTCTTTGCCTTCGTTTCCTGGAAATAATCTTTCACTaGGTCTATCCACAGCCCCCTATGTTTAGTCCTTATGTGGGCCCA | + |
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Preference number: 2 (lower is better) Translates to: RSAFLCLRFLEIIFH*VYPQPPMFSPYVGP Trigger: TGGGCCCACATAAGGACTAAACATAGGGGGCTGTGGATAGACCAAGTGAAAGATTATTTCCAGGAAACGAAGGCAAAGAAATGCAGATCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR-3UTR TCA 90 bp | CTCCATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAACATGTGAAGACCTGTaGTTTGTACTGCAGATGCCA | + |
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Preference number: 2 (lower is better) Translates to: LHQTEGSHSSQPQTTLIKTCEDL*FVLQMP Trigger: TGGCATCTGCAGTACAAATCACAGGTCTTCACATGT...TTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGATGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR TCA 90 bp | TTGTTCTTTCCCATAGTAGTCATTGTTCTGGCTACGGTAAAAGTGCCTGTAAGTCAGGTATATCCAGCATaGAGAGAAAGTAAGTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: LFFPIVVIVLATVKVPVSQVYPA*RESKSG Trigger: GCCTGACTTACTTTCTCTTCATGCTGGATATACCTG...ACTTACAGGCACTTTTACCGTAGCCAGAACAATGACTACTATGGGAAAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR-3UTR CCA 90 bp | AACAAGTGCTACGTGTTGAGGAAACTCCATCAGACAGAAGGAAGCCACAGTTCATTAGCATCACACTGCTaGAAACCATTGAGCTTTATA | + |
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Preference number: 2 (lower is better) Translates to: NKCYVLRKLHQTEGSHSSLASHC*KPLSFI Trigger: TATAAAGCTCAATGGTTTCCAGCAGTGTGATGCTAA...TGAACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR CAA 90 bp | CCCACTCACAGATACACCTTTGCAACATTCCACCATCCTGTCGATTaGCAGAACTCTTTAAAGACAAAAAGATCTACTTCTAAAGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: PTHRYTFATFHHPVD*QNSLKTKRSTSKAL Trigger: CAAGGCTTTAGAAGTAGATCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAAGGTGTATCTGTGAGTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR-3UTR TCA 90 bp | AGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGATAAGCATCTTGCAGATCCTTTaGGATTTCAAGCCATTCCAA | + |
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Preference number: 2 (lower is better) Translates to: RQKEATVHNHKQHSSKISILQIL*DFKPFQ Trigger: TTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGAT...GCTTATCTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR GCA 90 bp | ATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGATAGCTTACAGTCCATCTTaGAGATCCTTTGAGATTTCA | + |
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Preference number: 2 (lower is better) Translates to: IRQKEATVHNHKQHSSKIAYSPS*RSFEIS Trigger: TGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGC...TATCTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR TCA 90 bp | ACGGTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTCGTCAGGCAAAGTTTATaGAGAGGAAGGGATTTTAAA | + |
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Preference number: 2 (lower is better) Translates to: TVKVPVSIPKIKCQDLHFVRQSL*RGRDFK Trigger: TTTAAAATCCCTTCCTCTTCATAAACTTTGCCTGAC...GAAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTACCGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR-3UTR GCA 90 bp | TTGTTCTTTCCCATAGTAGTCATTGTTCTGGCTACGGTAAAAGTGCCTGTAAGTAGATCTGCATTTCTTTaGCTTCGTTTCCTGGAAATA | + |
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Preference number: 2 (lower is better) Translates to: LFFPIVVIVLATVKVPVSRSAFL*LRFLEI Trigger: TATTTCCAGGAAACGAAGGCAAAGAAATGCAGATCT...ACTTACAGGCACTTTTACCGTAGCCAGAACAATGACTACTATGGGAAAGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR CAA 90 bp | ATAATTGTAAGGCACGTGTCTTGCACAATTGAAGTTAGACAGTTCTaGCCTCTAAGTAAAGTGTTTCAGCAGATTAACAGCACAGTCAAT | + |
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Preference number: 2 (lower is better) Translates to: IIVRHVSCTIEVRQF*PLSKVFQQINSTVN Trigger: ATTGACTGTGCTGTTAATCTGCTGAAACACTTTACTTAGAGGCAAGAACTGTCTAACTTCAATTGTGCAAGACACGTGCCTTACAATTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR CCA 90 bp | AGGTATATCCAGCATGAAGAGAAAGTAAGTCAGGCAAAGTTTATGAAGAGGAAGGTTAAGATATCCATGTaGCCTCAATTGTGCTTAATC | + |
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Preference number: 2 (lower is better) Translates to: RYIQHEEKVSQAKFMKRKVKISM*PQLCLI Trigger: GATTAAGCACAATTGAGGCCACATGGATATCTTAAC...CTTCCTCTTCATAAACTTTGCCTGACTTACTTTCTCTTCATGCTGGATATACCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR-3UTR CCA 90 bp | AGACAAAATAGTTACAACTCTCTTGAGAAGAACAAGTGCTACGTGTTGAGGAAAACAGGTATTCCAGATTaGTCCACAGAAATTATATCC | + |
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Preference number: 2 (lower is better) Translates to: RQNSYNSLEKNKCYVLRKTGIPD*STEIIS Trigger: GGATATAATTTCTGTGGACCAATCTGGAATACCTGT...TTTCCTCAACACGTAGCACTTGTTCTTCTCAAGAGAGTTGTAACTATTTTGTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR CAA 90 bp | TTGTGCCTCTCTCTCGAATCAATGTATGTCCAAGGCAGATGCACATTCACGGACCTCACAGATACACCTTaGCAACATTCCACCATCCTG | + |
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Preference number: 3 (lower is better) Translates to: LCLSLESMYVQGRCTFTDLTDTP*QHSTIL Trigger: CAGGATGGTGGAATGTTGCAAAGGTGTATCTGTGAG...GTCCGTGAATGTGCATCTGCCTTGGACATACATTGATTCGAGAGAGAGGCACAA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| 3UTR TCA 72 bp | TCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTaGGATTTCAAGCCATTCCAAGGTGATGATGCCATT | + |
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Preference number: 3 (lower is better) Translates to: SRGSLQSILQIL*DFKPFQGDDAI Trigger: AATGGCATCATCACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| 3UTR-3UTR CAA 90 bp | AACAAGTGCTACGTGTTGAGGAAACTCCATCAGACAGAAGGAAGCCACAGTTCAACTCTGGGGAGCTATTaGCAATTCTATAGGCAACAT | + |
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Preference number: 3 (lower is better) Translates to: NKCYVLRKLHQTEGSHSSTLGSY*QFYRQH Trigger: ATGTTGCCTATAGAATTGCAAATAGCTCCCCAGAGT...TGAACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR TCA 72 bp | GTTACAACTCTCTTGAGAAGAACAAGTGCTACGTGTTaGGGAAACTCCATCAGACAGAAGGAAGCCACAGTT | + |
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Preference number: 3 (lower is better) Translates to: VTTLLRRTSATC*GNSIRQKEATV Trigger: AACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTTCTTCTCAAGAGAGTTGTAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR CAA 90 bp | GCCACATTGATTCCTGACACTCTGGGGAGCTATTTGCAATTCTATAGGCAACATCATCTTGCAGATCCTTaGAGATTTCAAGCCATTCCA | + |
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Preference number: 3 (lower is better) Translates to: ATLIPDTLGSYLQFYRQHHLADP*RFQAIP Trigger: TGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATG...ATGTTGCCTATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR CAA 90 bp | CTCCATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAACGTGTCTTGCACAATaGAAGTTAGACAGTTCTTGC | + |
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Preference number: 3 (lower is better) Translates to: LHQTEGSHSSQPQTTLIKTCLAQ*KLDSSC Trigger: GCAAGAACTGTCTAACTTCAATTGTGCAAGACACGT...TTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGATGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR-3UTR CAA 90 bp | TCCATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGCACAGGTATTCCAGATaGGTCCACAGAAATTATATC | + |
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Preference number: 3 (lower is better) Translates to: SIRQKEATVHNHKQHSSKHRYSR*VHRNYI Trigger: GATATAATTTCTGTGGACCAATCTGGAATACCTGTG...CTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGATGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR TCA 72 bp | CTCTGGGGAGCTATTTGCAATTCTATAGGCAACATGTaGAGACCTGTGATTTGTACTGCAGATGCCATTTTT | + |
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Preference number: 3 (lower is better) Translates to: LWGAICNSIGNM*RPVICTADAIF Trigger: AAAAATGGCATCTGCAGTACAAATCACAGGTCTTCACATGTTGCCTATAGAATTGCAAATAGCTCCCCAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR TCA 72 bp | CCAGTCCAGAGACTGGATGGTATAGTGCATCTCATATaGGGTTATAAGCACTCAAACTTCAAATACACAACA | + |
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Preference number: 3 (lower is better) Translates to: PVQRLDGIVHLI*GYKHSNFKYTT Trigger: TGTTGTGTATTTGAAGTTTGAGTGCTTATAACCTCATATGAGATGCACTATACCATCCAGTCTCTGGACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| 3UTR GCA 72 bp | AGACAAAATAGTTACAACTCTCTTGAGAAGAACAAGTaGTACGTGTTGAGGAAACTCCATCAGACAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: RQNSYNSLEKNK*YVLRKLHQTEG Trigger: TCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTTCTTCTCAAGAGAGTTGTAACTATTTTGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| 3UTR GCA 72 bp | TATCCCCAAGATCAAATGTCAAGATCTGCATTTCTTTaGCTTCGTTTCCTGGAAATAATCTTTCACTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: YPQDQMSRSAFL*LRFLEIIFHLV Trigger: GACCAAGTGAAAGATTATTTCCAGGAAACGAAGGCAAAGAAATGCAGATCTTGACATTTGATCTTGGGGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| CDS-3UTR TCA 90 bp | AAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCAGCAAAACACACCTTTTaGCCACTGACCACCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: KAHSPQDLGSIKETLGVSAKHTF*PLTTLR Trigger: CCGAAGGGTGGTCAGTGGTCAAAAGGTGTGTTTTGC...TGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR GCA 90 bp | AGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCATTTTCGGAACTGGGAGCTaGTTCCATCAGACCACTGGT | + |
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Preference number: 4 (lower is better) Translates to: STQPTGLRKYKGDTGRLIFGTGS*FHQTTG Trigger: ACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAA...AATGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR CCA 90 bp | AAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCACTCCTAGGCCAGGATTaGCAGTTGGTTGGTGGTACA | + |
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Preference number: 4 (lower is better) Translates to: KAHSPQDLGSIKETLGVSLLGQD*QLVGGT Trigger: TGTACCACCAACCAACTGCCAATCCTGGCCTAGGAG...TGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR TCA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATGCAAAACACACCTTTTaGCCACTGACCACCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: PQGGAYSPSCRSFEISSHAKHTF*PLTTLR Trigger: CCGAAGGGTGGTCAGTGGTCAAAAGGTGTGTTTTGC...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR TCA 90 bp | AAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCAGCGGGCTCTGTTGGATaGATCTCTGGTTCATACTTG | + |
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Preference number: 4 (lower is better) Translates to: KAHSPQDLGSIKETLGVSAGSVG*ISGSYL Trigger: CAAGTATGAACCAGAGATTCATCCAACAGAGCCCGC...TGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR GCA 90 bp | AAGGGAGGAGCCACATTGATTCCTGACACTCTGGGGAGCTATTTGCAATTCTATTTCACAAGCCAGCCTTaGTTCCTGGAAGCTCACCCG | + |
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Preference number: 4 (lower is better) Translates to: KGGATLIPDTLGSYLQFYFTSQP*FLEAHP Trigger: CGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAA...ATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGCTCCTCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| CDS-3UTR GCA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTTCGGAACTGGGAGCTaGTTCCATCAGACCACTGGT | + |
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Preference number: 4 (lower is better) Translates to: PQGGAYSPSCRSFEISSHFGTGS*FHQTTG Trigger: ACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAA...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR CCA 90 bp | AGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCATTGCCAGGATTGGCAGTTaGTTGGTGGTACATGACTAC | + |
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Preference number: 4 (lower is better) Translates to: STQPTGLRKYKGDTGRLIARIGS*LVVHDY Trigger: GTAGTCATGTACCACCAACCAACTGCCAATCCTGGC...AATGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR CCA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATCTCCTAGGCCAGGATTaGCAGTTGGTTGGTGGTACA | + |
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Preference number: 4 (lower is better) Translates to: PQGGAYSPSCRSFEISSHLLGQD*QLVGGT Trigger: TGTACCACCAACCAACTGCCAATCCTGGCCTAGGAG...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR CCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGCTCCTAGGCCAGGATTaGCAGTTGGTTGGTGGTACA | + |
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Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVLLGQD*QLVGGT Trigger: TGTACCACCAACCAACTGCCAATCCTGGCCTAGGAG...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR TCA 90 bp | TCCATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGGCAAAACACACCTTTTaGCCACTGACCACCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: SIRQKEATVHNHKQHSSKAKHTF*PLTTLR Trigger: CCGAAGGGTGGTCAGTGGTCAAAAGGTGTGTTTTGC...CTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGATGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| CDS-3UTR TCA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATCCAGAAGTCACCATCTaGAATACCTGTTCCGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: PQGGAYSPSCRSFEISSHPEVTI*NTCSGF Trigger: AAACCCGGAACAGGTATTTCAGATGGTGACTTCTGG...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR GCA 90 bp | GCTACGGTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTCACAAGCCAGCCTTaGTTCCTGGAAGCTCACCCG | + |
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Preference number: 4 (lower is better) Translates to: ATVKVPVSIPKIKCQDLHFTSQP*FLEAHP Trigger: CGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAA...ATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTACCGTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| CDS-3UTR GCA 90 bp | AAGAAACTGAAAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTTTCACAAGCCAGCCTTaGTTCCTGGAAGCTCACCCG | + |
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Preference number: 4 (lower is better) Translates to: KKLKSTQPTGLRKYKGDTFTSQP*FLEAHP Trigger: CGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAA...AGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTTTCAGTTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR CCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGGCCAGGATTGGCAGTTaGTTGGTGGTACATGACTAC | + |
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Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVARIGS*LVVHDY Trigger: GTAGTCATGTACCACCAACCAACTGCCAATCCTGGC...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR TCA 90 bp | GCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCATTATTGGTTGGTGGTACATaGCTACACATTTTTCACTCC | + |
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Preference number: 4 (lower is better) Translates to: AHSPQDLGSIKETLGVSLLVGGT*LHIFHS Trigger: GGAGTGAAAAATGTGTAGTCATGTACCACCAACCAA...TAATGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
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| CDS-3UTR TCA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATCTTCCTCGTGCTTTTTaGAATCCACAGTGTAGACTG | + |
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Preference number: 4 (lower is better) Translates to: PQGGAYSPSCRSFEISSHLPRAF*NPQCRL Trigger: CAGTCTACACTGTGGATTTCAAAAAGCACGAGGAAG...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
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| CDS-3UTR GCA 90 bp | AGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGATAAGCTTCGGAACTGGGAGCTaGTTCCATCAGACCACTGGT | + |
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Preference number: 4 (lower is better) Translates to: RQKEATVHNHKQHSSKISFGTGS*FHQTTG Trigger: ACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAA...GCTTATCTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
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| CDS-3UTR CCA 90 bp | GCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCATTATGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: AHSPQDLGSIKETLGVSLWVSSG*FVRYGF Trigger: AAAGCCGTATCTTACAAACCAACCTGAAGAGACCCA...TAATGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| 3UTR CAA 72 bp | CCTAATAGCTTTTGGCCCCCACTCACAGATACACCTTaGCAACATTCCACCATCCTGTCGATTTGCAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: PNSFWPPLTDTP*QHSTILSICRT Trigger: AGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAAGGTGTATCTGTGAGTGGGGGCCAAAAGCTATTAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR TCA 90 bp | GGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTTGGTTGGTGGTACATaGCTACACATTTTTCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: GELTVHLADPLRFQAIPRLVGGT*LHIFHS Trigger: GGAGTGAAAAATGTGTAGTCATGTACCACCAACCAA...CCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR GCA 90 bp | TTCAAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACAATTCACAAGCCAGCCTTaGTTCCTGGAAGCTCACCCG | + |
|
Preference number: 4 (lower is better) Translates to: FKPFQGDDAIPYIDQRLQFTSQP*FLEAHP Trigger: CGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAA...TTGTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CCA 90 bp | AGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCATTTTGGCAGTTGGTTGGTaGTACATGACTACACATTTT | + |
|
Preference number: 4 (lower is better) Translates to: STQPTGLRKYKGDTGRLILAVGW*YMTTHF Trigger: AAAATGTGTAGTCATGTACCACCAACCAACTGCCAA...AATGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR CCA 90 bp | AAGGGAGGAGCCACATTGATTCCTGACACTCTGGGGAGCTATTTGCAATTCTATGGATTGGCAGTTGGTTaGTGGTACATGACTACACAT | + |
|
Preference number: 4 (lower is better) Translates to: KGGATLIPDTLGSYLQFYGLAVG*WYMTTH Trigger: ATGTGTAGTCATGTACCACCAACCAACTGCCAATCC...ATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGCTCCTCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR CCA 90 bp | ACGGTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTCCTCCTAGGCCAGGATTaGCAGTTGGTTGGTGGTACA | + |
|
Preference number: 4 (lower is better) Translates to: TVKVPVSIPKIKCQDLHFLLGQD*QLVGGT Trigger: TGTACCACCAACCAACTGCCAATCCTGGCCTAGGAG...GAAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTACCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: PQGGAYSPSCRSFEISSHWVSSG*FVRYGF Trigger: AAAGCCGTATCTTACAAACCAACCTGAAGAGACCCA...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| 3UTR CAA 72 bp | GGAGCCACATTGATTCCTGACACTCTGGGGAGCTATTaGCAATTCTATAGGCAACATGTGAAGACCTGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: GATLIPDTLGSY*QFYRQHVKTCD Trigger: ATCACAGGTCTTCACATGTTGCCTATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR TCA 90 bp | AACAAGTGCTACGTGTTGAGGAAACTCCATCAGACAGAAGGAAGCCACAGTTCATTGGTTGGTGGTACATaGCTACACATTTTTCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: NKCYVLRKLHQTEGSHSSLVGGT*LHIFHS Trigger: GGAGTGAAAAATGTGTAGTCATGTACCACCAACCAA...TGAACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR TCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGATCCACAGTGTAGACTaGTTCGGGCTAGTTTTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVIHSVD*FGLVFD Trigger: ATCAAAAACTAGCCCGAATCAGTCTACACTGTGGAT...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR TCA 90 bp | AGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGATGATGCCACTTCCTCGTGCTTTTTaGAATCCACAGTGTAGACTG | + |
|
Preference number: 4 (lower is better) Translates to: SPSCRSFEISSHSKVMMPLPRAF*NPQCRL Trigger: CAGTCTACACTGTGGATTTCAAAAAGCACGAGGAAG...TGGCATCATCACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR GCA 90 bp | GCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGATCTTTCGGAACTGGGAGCTaGTTCCATCAGACCACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: ATFHHPVDLQNSLKTKRSFGTGS*FHQTTG Trigger: ACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAA...AGATCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGTGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVWVSSG*FVRYGF Trigger: AAAGCCGTATCTTACAAACCAACCTGAAGAGACCCA...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR TCA 90 bp | TTTGCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGAGCAAAACACACCTTTTaGCCACTGACCACCCTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: FATFHHPVDLQNSLKTKRAKHTF*PLTTLR Trigger: CCGAAGGGTGGTCAGTGGTCAAAAGGTGTGTTTTGC...TCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR TCA 90 bp | AGGTATATCCAGCATGAAGAGAAAGTAAGTCAGGCAAAGTTTATGAAGAGGAAGGCGGGCTCTGTTGGATaGATCTCTGGTTCATACTTG | + |
|
Preference number: 4 (lower is better) Translates to: RYIQHEEKVSQAKFMKRKAGSVG*ISGSYL Trigger: CAAGTATGAACCAGAGATTCATCCAACAGAGCCCGC...CTTCCTCTTCATAAACTTTGCCTGACTTACTTTCTCTTCATGCTGGATATACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | CTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTTTGGCAGTTGGTTGGTaGTACATGACTACACATTTT | + |
|
Preference number: 4 (lower is better) Translates to: LKGELTVHLADPLRFQAILAVGW*YMTTHF Trigger: AAAATGTGTAGTCATGTACCACCAACCAACTGCCAA...AATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGTTGGCAGTTGGTTGGTaGTACATGACTACACATTTT | + |
|
Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVLAVGW*YMTTHF Trigger: AAAATGTGTAGTCATGTACCACCAACCAACTGCCAA...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CCA 90 bp | TCAAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACAAAGCCAGGATTGGCAGTTaGTTGGTGGTACATGACTAC | + |
|
Preference number: 4 (lower is better) Translates to: SSHSKVMMPFLTLINDYKARIGS*LVVHDY Trigger: GTAGTCATGTACCACCAACCAACTGCCAATCCTGGC...TTTGTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CCA 90 bp | CAAGTGCTACGTGTTGAGGAAACTCCATCAGACAGAAGGAAGCCACAGTTCACATGTTGGATGAATCTCTaGTTCATACTTGCAGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: QVLRVEETPSDRRKPQFTCWMNL*FILADV Trigger: TACATCTGCAAGTATGAACCAGAGATTCATCCAACA...TGTGAACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR GCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGTCTCTGGTTCATACTTaGAGATGTAATTGTGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVSLVHT*RCNCAS Trigger: TGAAGCACAATTACATCTGCAAGTATGAACCAGAGA...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR GCA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGATTGGGAATTATGCCTaGTTCAGTAACAACCACATT | + |
|
Preference number: 4 (lower is better) Translates to: GAYSPSCRSFEISSHSKVIGNYA*FSNNHI Trigger: AATGTGGTTGTTACTGAAGCAGGCATAATTCCCAAT...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR GCA 90 bp | AAGGGAGGAGCCACATTGATTCCTGACACTCTGGGGAGCTATTTGCAATTCTATCTTCCTTTACTTTTATaGAACATCTGGAAACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KGGATLIPDTLGSYLQFYLPLLL*NIWKQQ Trigger: CTGCTGTTTCCAGATGTTGCATAAAAGTAAAGGAAG...ATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGCTCCTCCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR CCA 90 bp | GTACTGAAAGGTTCATTGTGCCTCTCTCTCGAATCAATGTATGTCCAAGGCAGATTGGCAGTTGGTTGGTaGTACATGACTACACATTTT | + |
|
Preference number: 4 (lower is better) Translates to: VLKGSLCLSLESMYVQGRLAVGW*YMTTHF Trigger: AAAATGTGTAGTCATGTACCACCAACCAACTGCCAA...TCTGCCTTGGACATACATTGATTCGAGAGAGAGGCACAATGAACCTTTCAGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | GTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTCTTTGCCAGGATTGGCAGTTaGTTGGTGGTACATGACTAC | + |
|
Preference number: 4 (lower is better) Translates to: VKVPVSIPKIKCQDLHFFARIGS*LVVHDY Trigger: GTAGTCATGTACCACCAACCAACTGCCAATCCTGGC...AAAGAAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR TCA 90 bp | CAGAACAAACATGAACTATCCTACCAAAGAAATGTTTTCCCTATGCAAGGATTTGCGGGCTCTGTTGGATaGATCTCTGGTTCATACTTG | + |
|
Preference number: 4 (lower is better) Translates to: QNKHELSYQRNVFPMQGFAGSVG*ISGSYL Trigger: CAAGTATGAACCAGAGATTCATCCAACAGAGCCCGC...AAATCCTTGCATAGGGAAAACATTTCTTTGGTAGGATAGTTCATGTTTGTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR GCA 90 bp | TCCATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGATTGGGAATTATGCCTaGTTCAGTAACAACCACATT | + |
|
Preference number: 4 (lower is better) Translates to: SIRQKEATVHNHKQHSSKIGNYA*FSNNHI Trigger: AATGTGGTTGTTACTGAAGCAGGCATAATTCCCAAT...CTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGATGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR CCA 90 bp | GTACTGAAAGGTTCATTGTGCCTCTCTCTCGAATCAATGTATGTCCAAGGCAGATGTTGGATGAATCTCTaGTTCATACTTGCAGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: VLKGSLCLSLESMYVQGRCWMNL*FILADV Trigger: TACATCTGCAAGTATGAACCAGAGATTCATCCAACA...TCTGCCTTGGACATACATTGATTCGAGAGAGAGGCACAATGAACCTTTCAGTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR GCA 90 bp | AAGAAACTGAAAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTATTGGGAATTATGCCTaGTTCAGTAACAACCACATT | + |
|
Preference number: 4 (lower is better) Translates to: KKLKSTQPTGLRKYKGDTIGNYA*FSNNHI Trigger: AATGTGGTTGTTACTGAAGCAGGCATAATTCCCAAT...AGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTTTCAGTTTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR GCA 90 bp | ATTGTGCCTGGGATTCAGTTTGTTCTTTCCCATAGTAGTCATTGTTCTGGCTACGATGAAGTGTCTCCTTaGTTTCCTTTTATGCAACAT | + |
|
Preference number: 4 (lower is better) Translates to: IVPGIQFVLSHSSHCSGYDEVSP*FPFMQH Trigger: ATGTTGCATAAAAGGAAAGCAAGGAGACACTTCATC...GTAGCCAGAACAATGACTACTATGGGAAAGAACAAACTGAATCCCAGGCACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| 3UTR CAA 72 bp | TTTCTTTGCCTTCGTTTCCTGGAAATAATCTTTCACTaGGTCTATCCACAGCCCCCTATGTTTAGTCCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: FLCLRFLEIIFH*VYPQPPMFSPY Trigger: ATAAGGACTAAACATAGGGGGCTGTGGATAGACCAAGTGAAAGATTATTTCCAGGAAACGAAGGCAAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR TCA 90 bp | GTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTCTTTTTGGTTGGTGGTACATaGCTACACATTTTTCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: VKVPVSIPKIKCQDLHFFLVGGT*LHIFHS Trigger: GGAGTGAAAAATGTGTAGTCATGTACCACCAACCAA...AAAGAAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR TCA 90 bp | GTATTCCAGATTGGTCCACAGAAATTATATCCGCATGGTCCATTTCTTTTACATATCCACAGTGTAGACTaGTTCGGGCTAGTTTTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: VFQIGPQKLYPHGPFLLHIHSVD*FGLVFD Trigger: ATCAAAAACTAGCCCGAATCAGTCTACACTGTGGAT...ATGTAAAAGAAATGGACCATGCGGATATAATTTCTGTGGACCAATCTGGAATAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR GCA 90 bp | ATCAGACAGAAGGAAGCCACAGTTCACAACCACAAACAACACTCATCAAAGATATCAGGTTCTGAAGCATaGTCTCTATTAACTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: IRQKEATVHNHKQHSSKISGSEA*SLLTSV Trigger: AACAGAAGTTAATAGAGAGCATGCTTCAGAACCTGA...TATCTTTGATGAGTGTTGTTTGTGGTTGTGAACTGTGGCTTCCTTCTGTCTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR GCA 90 bp | TCAAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACAAAGCTCTGGTTCATACTTaGAGATGTAATTGTGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SSHSKVMMPFLTLINDYKALVHT*RCNCAS Trigger: TGAAGCACAATTACATCTGCAAGTATGAACCAGAGC...TTTGTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232415.2 |
||
| CDS-3UTR CCA 90 bp | GCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGATCTCTTTTATGCAACATCTaGAAACAGCAGGTTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: ATFHHPVDLQNSLKTKRSLLCNI*KQQVPK Trigger: TTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAG...AGATCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | ACACAACATACAGTAACTGTACAACACAAGACAAGTAAAGGTGACACACCATCTCTTTTATGCAACATCTaGAAACAGCAGGTTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: TQHTVTVQHKTSKGDTPSLLCNI*KQQVPK Trigger: TTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAG...AGATGGTGTGTCACCTTTACTTGTCTTGTGTTGTACAGTTACTGTATGTTGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR CCA 90 bp | AAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACAAAACCTTTTATGCAACATCTaGAAACAGCAGGTTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: KPFQGDDAIPYIDQRLQNLLCNI*KQQVPK Trigger: TTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAG...GTTTTGTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| 3UTR CAA 72 bp | GTATCCCCAAGATCAAATGTCAAGATCTGCATTTCTTaGCCTTCGTTTCCTGGAAATAATCTTTCACTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: VSPRSNVKICIS*PSFPGNNLSLG Trigger: ACCAAGTGAAAGATTATTTCCAGGAAACGAAGGCAAAGAAATGCAGATCTTGACATTTGATCTTGGGGATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR GCA 90 bp | GCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGATCTTCTCTGGTTCATACTTaGAGATGTAATTGTGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ATFHHPVDLQNSLKTKRSSLVHT*RCNCAS Trigger: TGAAGCACAATTACATCTGCAAGTATGAACCAGAGA...AGATCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR GCA 90 bp | ACACAACATACAGTAACTGTACAACACAAGACAAGTAAAGGTGACACACCATCTTCTCTGGTTCATACTTaGAGATGTAATTGTGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: TQHTVTVQHKTSKGDTPSSLVHT*RCNCAS Trigger: TGAAGCACAATTACATCTGCAAGTATGAACCAGAGA...AGATGGTGTGTCACCTTTACTTGTCTTGTGTTGTACAGTTACTGTATGTTGTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR GCA 90 bp | AAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACAAAACCTTCCTTTACTTTTATaGAACATCTGGAAACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KPFQGDDAIPYIDQRLQNLPLLL*NIWKQQ Trigger: CTGCTGTTTCCAGATGTTGCATAAAAGTAAAGGAAG...GTTTTGTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CCA 90 bp | ACACAACATACAGTAACTGTACAACACAAGACAAGTAAAGGTGACACACCATCTTGTTGGATGAATCTCTaGTTCATACTTGCAGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: TQHTVTVQHKTSKGDTPSCWMNL*FILADV Trigger: TACATCTGCAAGTATGAACCAGAGATTCATCCAACA...AGATGGTGTGTCACCTTTACTTGTCTTGTGTTGTACAGTTACTGTATGTTGTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR CCA 90 bp | GTAAGAAAAGTAGTTAAGATATCCATGTGGCCTCAATTGTGCTTAATCATTCACTGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: VRKVVKISMWPQLCLIIHWVSSG*FVRYGF Trigger: AAAGCCGTATCTTACAAACCAACCTGAAGAGACCCA...GTGAATGATTAAGCACAATTGAGGCCACATGGATATCTTAACTACTTTTCTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | TTTGCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGAATTTTGGAAATGGTATaGAATGAGAGAACCCGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FATFHHPVDLQNSLKTKRILEMV*NERTRH Trigger: ATGGCGGGTTCTCTCATTCCATACCATTTCCAAAAT...TCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| 3UTR CAA 72 bp | AGATACACCTTTGCAACATTCCACCATCCTGTCGATTaGCAGAACTCTTTAAAGACAAAAAGATCTACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RYTFATFHHPVD*QNSLKTKRSTS Trigger: AGAAGTAGATCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAAGGTGTATCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR GCA 90 bp | GTAAGAAAAGTAGTTAAGATATCCATGTGGCCTCAATTGTGCTTAATCATTCACCTTGCTTTCCTTTTATaGAACATCTGGAAACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VRKVVKISMWPQLCLIIHLAFLL*NIWKQQ Trigger: CTGCTGTTTCCAGATGTTGCATAAAAGGAAAGCAAG...GTGAATGATTAAGCACAATTGAGGCCACATGGATATCTTAACTACTTTTCTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | AACAGAACAAACATGAACTATCCTACCAAAGAAATGTTTTCCCTATGCAAGGATCTTTTATGCAACATCTaGAAACAGCAGGTTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: NRTNMNYPTKEMFSLCKDLLCNI*KQQVPK Trigger: TTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAG...ATCCTTGCATAGGGAAAACATTTCTTTGGTAGGATAGTTCATGTTTGTTCTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR CCA 90 bp | TACGGTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTGAAGGAGAGTTATTTTaGAAATGGTATGGAATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: YGKSACKYPQDQMSRSAFEGELF*KWYGMR Trigger: TCTCATTCCATACCATTTCCAAAATAACTCTCCTTC...AAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTACCGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR GCA 90 bp | GTAAGAAAAGTAGTTAAGATATCCATGTGGCCTCAATTGTGCTTAATCATTCACATTGGGAATTATGCCTaGTTCAGTAACAACCACATT | + |
|
Preference number: 4 (lower is better) Translates to: VRKVVKISMWPQLCLIIHIGNYA*FSNNHI Trigger: AATGTGGTTGTTACTGAAGCAGGCATAATTCCCAAT...GTGAATGATTAAGCACAATTGAGGCCACATGGATATCTTAACTACTTTTCTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | TTTGCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGACCATGTGTACCAGATTaGAATTTAAACTTTCTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: FATFHHPVDLQNSLKTKRPCVPD*NLNFLQ Trigger: TTGCAGAAAGTTTAAATTCCAATCTGGTACACATGG...TCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CCA 90 bp | GTAAGAAAAGTAGTTAAGATATCCATGTGGCCTCAATTGTGCTTAATCATTCACGAGTTATTTTGGAAATaGTATGGAATGAGAGAACCC | + |
|
Preference number: 4 (lower is better) Translates to: VRKVVKISMWPQLCLIIHELFWK*YGMREP Trigger: GGGTTCTCTCATTCCATACCATTTCCAAAATAACTC...GTGAATGATTAAGCACAATTGAGGCCACATGGATATCTTAACTACTTTTCTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS GCA 90 bp | CTCAAGACTCAGGAGGACACCCCCTTCACTTTCACAAGCCAGCCTTaGTTCCTGGAAGCTCACCCGGCTAGACAGTTCATGGAAGTACGC | + |
|
Preference number: 5 (lower is better) Translates to: LKTQEDTPFTFTSQP*FLEAHPARQFMEVR Trigger: GCGTACTTCCATGAACTGTCTAGCCGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAAGTGAAGGGGGTGTCCTCCTGAGTCTTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CCA 90 bp | GTTTCGGAACTGGGAGCTGCTTCCATCAGACCACTGGTAGAGATCTaGGCAGGCACCCGATGTTTGGCCATCTCCGCTTCTCAAAAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: VSELGAASIRPLVEI*AGTRCLAISASQKS Trigger: GGACTTTTGAGAAGCGGAGATGGCCAAACATCGGGTGCCTGCCCAGATCTCTACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CCA 90 bp | CTCAGGAGGACACCCCCTTCACTTTCACAAGCCAGCCTTGCTTCCTaGAAGCTCACCCGGCTAGACAGTTCATGGAAGTACGCCATTTTG | + |
|
Preference number: 5 (lower is better) Translates to: LRRTPPSLSQASLAS*KLTRLDSSWKYAIL Trigger: CAAAATGGCGTACTTCCATGAACTGTCTAGCCGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAAGTGAAGGGGGTGTCCTCCTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGGGGGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTTTCACAAGCCAGCCTaGCTTCCTGGAAGCTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: PQGGAYSPSCRSFEISSHFHKPA*LPGSSP Trigger: GGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAA...ATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCCCCCTTGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | AAGGGAGGAGCCACATTGATTCCTGACACTCTGGGGAGCTATTTGCAATTCTATCCTCCTAGGCCAGGATaGGCAGTTGGTTGGTGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: KGGATLIPDTLGSYLQFYPPRPG*AVGWWY Trigger: GTACCACCAACCAACTGCCAATCCTGGCCTAGGAGG...ATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGCTCCTCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS TCA 90 bp | GGTAGGGACCTCCTAGGCCAGGATTGGCAGTTGGTTGGTGGTACATaGCTACACATTTTTCACTCCCACAAGAAGGTTCATCAGTGTACC | + |
|
Preference number: 5 (lower is better) Translates to: GRDLLGQDWQLVGGT*LHIFHSHKKVHQCT Trigger: GGTACACTGATGAACCTTCTTGTGGGAGTGAAAAATGTGTAGTCATGTACCACCAACCAACTGCCAATCCTGGCCTAGGAGGTCCCTACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | AACAAGTGCTACGTGTTGAGGAAACTCCATCAGACAGAAGGAAGCCACAGTTCATTTCACAAGCCAGCCTaGCTTCCTGGAAGCTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: NKCYVLRKLHQTEGSHSSFHKPA*LPGSSP Trigger: GGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAA...TGAACTGTGGCTTCCTTCTGTCTGATGGAGTTTCCTCAACACGTAGCACTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS TCA 90 bp | TTGGCCATCTCCGCTTCTCAAAAGTCCTATCCAGAAGTCACCATCTaGAATACCTGTTCCGGGTTTTGTCAGGTTCTGAAGCATGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LAISASQKSYPEVTI*NTCSGFCQVLKHAL Trigger: GAGAGCATGCTTCAGAACCTGACAAAACCCGGAACAGGTATTTCAGATGGTGACTTCTGGATAGGACTTTTGAGAAGCGGAGATGGCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | AAGAAACTGAAAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTTTTCACAAGCCAGCCTaGCTTCCTGGAAGCTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: KKLKSTQPTGLRKYKGDTFHKPA*LPGSSP Trigger: GGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAA...AGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTTTCAGTTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR CAA 90 bp | AAAGCACACAGCCCACAGGACTTAGGAAGTATAAAGGAGACACTGGGCGTCTCAATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: KAHSPQDLGSIKETLGVSMGLFR*VCKIRL Trigger: AAGCCGTATCTTACAAACCAACCTGAAGAGACCCAT...TGAGACGCCCAGTGTCTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTCTTTCACAAGCCAGCCTaGCTTCCTGGAAGCTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: TVKVPVSIPKIKCQDLHFFHKPA*LPGSSP Trigger: GGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAA...GAAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTACCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CAA 90 bp | AGGTATATCCAGCATGAAGAGAAAGTAAGTCAGGCAAAGTTTATGAAGAGGAAGCCTCCTAGGCCAGGATaGGCAGTTGGTTGGTGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: RYIQHEEKVSQAKFMKRKPPRPG*AVGWWY Trigger: GTACCACCAACCAACTGCCAATCCTGGCCTAGGAGG...CTTCCTCTTCATAAACTTTGCCTGACTTACTTTCTCTTCATGCTGGATATACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CAA 90 bp | ACACAACATACAGTAACTGTACAACACAAGACAAGTAAAGGTGACACACCATCTCCTCCTAGGCCAGGATaGGCAGTTGGTTGGTGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: TQHTVTVQHKTSKGDTPSPPRPG*AVGWWY Trigger: GTACCACCAACCAACTGCCAATCCTGGCCTAGGAGG...AGATGGTGTGTCACCTTTACTTGTCTTGTGTTGTACAGTTACTGTATGTTGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114216.2 |
||
| CDS-3UTR CAA 90 bp | TTCAAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACAACCTCCTAGGCCAGGATaGGCAGTTGGTTGGTGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: FKPFQGDDAIPYIDQRLQPPRPG*AVGWWY Trigger: GTACCACCAACCAACTGCCAATCCTGGCCTAGGAGG...TTGTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTTGAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS CCA 90 bp | ATGCCTGCTTCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGGTTCATACTTG | + |
|
Preference number: 5 (lower is better) Translates to: MPASVTTTFSWVSSG*FVRYGFSAGSGSYL Trigger: CAAGTATGAACCAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAAGCAGGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | GCCACATTGATTCCTGACACTCTGGGGAGCTATTTGCAATTCTATAGGCAACATAGGATTGGCAGTTGGTaGGTGGTACATGACTACACA | + |
|
Preference number: 5 (lower is better) Translates to: ATLIPDTLGSYLQFYRQHRIGSW*VVHDYT Trigger: TGTGTAGTCATGTACCACCAACCAACTGCCAATCCT...ATGTTGCCTATAGAATTGCAAATAGCTCCCCAGAGTGTCAGGAATCAATGTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023568.14 |
||
| CDS-3UTR CAA 90 bp | GGAGCTTACAGTCCATCTTGCAGATCCTTTGAGATTTCAAGCCATTCCAAGGTGATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: GAYSPSCRSFEISSHSKVMGLFR*VCKIRL Trigger: AAGCCGTATCTTACAAACCAACCTGAAGAGACCCAT...CACCTTGGAATGGCTTGAAATCTCAAAGGATCTGCAAGATGGACTGTAAGCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS CCA 90 bp | GAGTCTTTGATGAAGTGTCTCCTTGCTTTCCTTTTATGCAACATCTaGAAACAGCAGGTTCCCAAAGCAACCAGTATCAGTAAGAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: ESLMKCLLAFLLCNI*KQQVPKATSISKSS Trigger: GCTGCTCTTACTGATACTGGTTGCTTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAGGAAAGCAAGGAGACACTTCATCAAAGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS GCA 90 bp | CACCATCTGAAATACCTGTTCCGGGTTTTGTCAGGTTCTGAAGCATaGTCTCTATTAACTTCTGTTCAGCTTCATTCTCAAGACTCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: HHLKYLFRVLSGSEA*SLLTSVQLHSQDSG Trigger: TCCTGAGTCTTGAGAATGAAGCTGAACAGAAGTTAATAGAGAGCATGCTTCAGAACCTGACAAAACCCGGAACAGGTATTTCAGATGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CCA 90 bp | ATTAGATTGGGAATTATGCCTGCTTCAGTAACAACCACATTTTCATaGGTCTCTTCAGGTTGGTTTGTAAGATACGGCTTTTCAGCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: IRLGIMPASVTTTFS*VSSGWFVRYGFSAG Trigger: GCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAAGCAGGCATAATTCCCAATCTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS TCA 90 bp | CAGAAGTCACCATCTGAAATACCTGTTCCGGGTTTTGTCAGGTTCTaGAGCATGCTCTCTATTAACTTCTGTTCAGCTTCATTCTCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: QKSPSEIPVPGFVRF*SMLSINFCSASFSR Trigger: TCTTGAGAATGAAGCTGAACAGAAGTTAATAGAGAGCATGCTTCAGAACCTGACAAAACCCGGAACAGGTATTTCAGATGGTGACTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | TACGGTAAAAGTGCCTGTAAGTATCCCCAAGATCAAATGTCAAGATCTGCATTTATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: YGKSACKYPQDQMSRSAFMGLFR*VCKIRL Trigger: AAGCCGTATCTTACAAACCAACCTGAAGAGACCCAT...AAATGCAGATCTTGACATTTGATCTTGGGGATACTTACAGGCACTTTTACCGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS-3UTR CAA 90 bp | ATTTCAAGCCATTCCAAGGTGATGATGCCATTCCTTACATTGATCAACGATTACATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: ISSHSKVMMPFLTLINDYMGLFR*VCKIRL Trigger: AAGCCGTATCTTACAAACCAACCTGAAGAGACCCAT...GTAATCGTTGATCAATGTAAGGAATGGCATCATCACCTTGGAATGGCTTGAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023568.14 ENSMUST00000232415.2 |
||
| CDS-3UTR CAA 90 bp | TTTGCAACATTCCACCATCCTGTCGATTTGCAGAACTCTTTAAAGACAAAAAGAGCCATGTGTACCAGATaGGAATTTAAACTTTCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: FATFHHPVDLQNSLKTKRAMCTR*EFKLSA Trigger: TGCAGAAAGTTTAAATTCCAATCTGGTACACATGGC...TCTTTTTGTCTTTAAAGAGTTCTGCAAATCGACAGGATGGTGGAATGTTGCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
||
| CDS CCA 72 bp | CTGGGAGCTGCTTCCATCAGACCACTGGTAGAGATCTaGGCAGGCACCCGATGTTTGGCCATCTCCGCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LGAASIRPLVEI*AGTRCLAISAS Trigger: AGAAGCGGAGATGGCCAAACATCGGGTGCCTGCCCAGATCTCTACCAGTGGTCTGATGGAAGCAGCTCCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS GCA 72 bp | CAGGAGGACACCCCCTTCACTTTCACAAGCCAGCCTTaGTTCCTGGAAGCTCACCCGGCTAGACAGTTCATG | + |
|
Preference number: 6 (lower is better) Translates to: QEDTPFTFTSQP*FLEAHPARQFM Trigger: CATGAACTGTCTAGCCGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAAGTGAAGGGGGTGTCCTCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CCA 72 bp | ACACCCCCTTCACTTTCACAAGCCAGCCTTGCTTCCTaGAAGCTCACCCGGCTAGACAGTTCATGGAAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: TPPSLSQASLAS*KLTRLDSSWKY Trigger: GTACTTCCATGAACTGTCTAGCCGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAAGTGAAGGGGGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CAA 90 bp | GCTTCCATCAGACCACTGGTAGAGATCTGGGCAGGCACCCGATGTTaGGCCATCTCCGCTTCTCAAAAGTCCTATCCAGAAGTCACCATC | + |
|
Preference number: 6 (lower is better) Translates to: ASIRPLVEIWAGTRC*AISASQKSYPEVTI Trigger: GATGGTGACTTCTGGATAGGACTTTTGAGAAGCGGAGATGGCCAAACATCGGGTGCCTGCCCAGATCTCTACCAGTGGTCTGATGGAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS GCA 72 bp | AAGGTTCATCAGTGTACCAGTTTCGGAACTGGGAGCTaGTTCCATCAGACCACTGGTAGAGATCTGGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: KVHQCTSFGTGS*FHQTTGRDLGR Trigger: CCTGCCCAGATCTCTACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAAACTGGTACACTGATGAACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS TCA 72 bp | CTCCTAGGCCAGGATTGGCAGTTGGTTGGTGGTACATaGCTACACATTTTTCACTCCCACAAGAAGGTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LLGQDWQLVGGT*LHIFHSHKKVH Trigger: ATGAACCTTCTTGTGGGAGTGAAAAATGTGTAGTCATGTACCACCAACCAACTGCCAATCCTGGCCTAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CCA 72 bp | TCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SVTTTFSWVSSG*FVRYGFSAGSG Trigger: ACCAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232415.2 |
||
| CDS CAA 72 bp | TTCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: FSNNHIFMGLFR*VCKIRLFSGLW Trigger: CCAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232415.2 |
||
| CDS CAA 90 bp | TATGCCTGCTTCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGTTGGATGAAT | + |
|
Preference number: 6 (lower is better) Translates to: YACFSNNHIFMGLFR*VCKIRLFSGLCWMN Trigger: ATTCATCCAACAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAAGCAGGCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 |
||
| CDS CAA 90 bp | TATGCCTGCTTCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGGTTCATACTT | + |
|
Preference number: 6 (lower is better) Translates to: YACFSNNHIFMGLFR*VCKIRLFSGLWFIL Trigger: AAGTATGAACCAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAAGCAGGCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232415.2 |
||
| CDS CCA 72 bp | TCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTTaGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: SVTTTFSWVSSG*FVRYGFSAGSV Trigger: AACAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 |
||
| CDS CAA 72 bp | TTCAGTAACAACCACATTTTCATGGGTCTCTTCAGGTaGGTTTGTAAGATACGGCTTTTCAGCGGGCTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: FSNNHIFMGLFR*VCKIRLFSGLC Trigger: ACAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 |
||
| CDS CCA 72 bp | AGGTTGGTTTGTAAGATACGGCTTTTCAGCGGGCTCTaGTTCATACTTGCAGATGTAATTGTGCTTCATGTT | + |
|
Preference number: 6 (lower is better) Translates to: RLVCKIRLFSGL*FILADVIVLHV Trigger: AACATGAAGCACAATTACATCTGCAAGTATGAACCAGAGCCCGCTGAAAAGCCGTATCTTACAAACCAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232415.2 |
||
| CDS CAA 72 bp | TCCAGAAGTCACCATCTGAAATACCTGTTCCGGGTTTaGTCAGGTTCTGAAGCATGCTCTCTATTAACTTCT | + |
|
Preference number: 6 (lower is better) Translates to: SRSHHLKYLFRV*SGSEACSLLTS Trigger: AGAAGTTAATAGAGAGCATGCTTCAGAACCTGACAAAACCCGGAACAGGTATTTCAGATGGTGACTTCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
||
| CDS CAA 90 bp | AAAGTCCTATCCAGAAGTCACCATCTGAAATACCTGTTCCGGGTTTaGTCAGGTTCTGAAGCATGCTCTCTATTAACTTCTGTTCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: KVLSRSHHLKYLFRV*SGSEACSLLTSVQL Trigger: AAGCTGAACAGAAGTTAATAGAGAGCATGCTTCAGAACCTGACAAAACCCGGAACAGGTATTTCAGATGGTGACTTCTGGATAGGACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
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| CDS CCA 72 bp | GGAATTATGCCTGCTTCAGTAACAACCACATTTTCATaGGTCTCTTCAGGTTGGTTTGTAAGATACGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: GIMPASVTTTFS*VSSGWFVRYGF Trigger: AAAGCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAAGCAGGCATAATTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023568.14 ENSMUST00000069148.13 ENSMUST00000114216.2 ENSMUST00000232415.2 |
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| CDS CAA 90 bp | TTTTGGAAATGGTATGGAATGAGAGAACCCGCCATGTGTACCAGATaGGAATTTAAACTTTCTGCAAGGCACTCAGATGATAATGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: FWKWYGMREPAMCTR*EFKLSARHSDDNGV Trigger: CACTCCATTATCATCTGAGTGCCTTGCAGAAAGTTTAAATTCCAATCTGGTACACATGGCGGGTTCTCTCATTCCATACCATTTCCAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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| CDS CAA 90 bp | TTTAAACTTTCTGCAAGGCACTCAGATGATAATGGAGTGGAGTCTTaGATGAAGTGTCTCCTTGCTTTCCTTTTATGCAACATCTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: FKLSARHSDDNGVES*MKCLLAFLLCNIWK Trigger: TTTCCAGATGTTGCATAAAAGGAAAGCAAGGAGACACTTCATCAAAGACTCCACTCCATTATCATCTGAGTGCCTTGCAGAAAGTTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069148.13 |
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