Pregenerated sensors for CHMP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028419Ensembl transcript IDs: ENSMUST00000030128.6
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | TACAATACCACAACAGACAAGGGTTCTGAAGCATACTATCAGCAGTCCCAATCTCCCAGAATACTTCTCTaGTTGTTTCACATCACGTGC | + |
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Preference number: 3 (lower is better) Translates to: YNTTTDKGSEAYYQQSQSPRILL*LFHITC Trigger: GCACGTGATGTGAAACAACAAGAGAAGTATTCTGGG...AGATTGGGACTGCTGATAGTATGCTTCAGAACCCTTGTCTGTTGTGGTATTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| 3UTR TCA 72 bp | ATCAATCACTTTTATCTTATCAATGTATCAGCACACTaGGACTGTACTTACACTACCATAGAATTCAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: INHFYLINVSAH*DCTYTTIEFRV Trigger: GACTCTGAATTCTATGGTAGTGTAAGTACAGTCTCAGTGTGCTGATACATTGATAAGATAAAAGTGATTGAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR GCA 90 bp | GCAGATCGGGAACTATTTCCTAGTCCCAGAATACTTCTCTTGTTGTTTCACATCCTGGGGTGCCGTAGCTaGGGCCCAGGGCTTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: ADRELFPSPRILLLLFHILGCRS*GPGLPG Trigger: TCCAGGAAGCCCTGGGCCGCAGCTACGGCACCCCAG...GATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR GCA 90 bp | AAACCCATCTACAATACCACAACAGACAAGGGTTCTGAAGCATACTATCAGCAGTGCAGGAGCGGAAGCTaGCTCATCCAAGTAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: KPIYNTTTDKGSEAYYQQCRSGS*LIQVGA Trigger: AGCTCCTACTTGGATGAGGCAGCTTCCGCTCCTGCA...CTGCTGATAGTATGCTTCAGAACCCTTGTCTGTTGTGGTATTGTAGATGGGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR GCA 90 bp | GGGAACTATTTCCTAGTCCCAGAATACTTCTCTTGTTGTTTCACATCACGTGCTAACACCTTCCGGAATTaGAGGAGCGGAAGCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GNYFLVPEYFSCCFTSRANTFRN*RSGSCL Trigger: GAGGCAGCTTCCGCTCCTGCAATTCCGGAAGGTGTT...AGCACGTGATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR GCA 90 bp | AAACCCATCTACAATACCACAACAGACAAGGGTTCTGAAGCATACTATCAGCAGTTTGTCAATGGATTCTaGCCTGCTATCCACCGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: KPIYNTTTDKGSEAYYQQFVNGF*PAIHRP Trigger: GGGACGGTGGATAGCAGGGCAGAATCCATTGACAAA...CTGCTGATAGTATGCTTCAGAACCCTTGTCTGTTGTGGTATTGTAGATGGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR GCA 90 bp | AGAGGCCATGACTTAAACCCATCTACAATACCACAACAGACAAGGGTTCTGAAGAGGTTGTCTCGCTGTTaGTCATACATCCGCTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: RGHDLNPSTIPQQTRVLKRLSRC*SYIRFC Trigger: GCAAAAGCGGATGTATGAGCAACAGCGAGACAACCT...CTTCAGAACCCTTGTCTGTTGTGGTATTGTAGATGGGTTTAAGTCATGGCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CCA 90 bp | GCAGATCGGGAACTATTTCCTAGTCCCAGAATACTTCTCTTGTTGTTTCACATCATGTTAAAGGACTGTTaGGCCAGGTTGTCTCGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ADRELFPSPRILLLLFHIMLKDC*ARLSRC Trigger: ACAGCGAGACAACCTGGCCCAACAGTCCTTTAACAT...GATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| 3UTR CAA 72 bp | GATCGGGAACTATTTCCTAGTCCCAGAATACTTCTCTaGTTGTTTCACATCACGTGCTGGAATGTTGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: DRELFPSPRILL*LFHITCWNVVS Trigger: ACTTACAACATTCCAGCACGTGATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR GCA 90 bp | CTATCAGCAGTCCCAATCTCATCAATCACTTTTATCTTATCAATGTATCAGCACTCATACATCCGCTTTTaGTTTAAAACTCTCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LSAVPISSITFILSMYQHSYIRF*FKTLRA Trigger: AGCCCTGAGAGTTTTAAAGCAAAAGCGGATGTATGA...GTGCTGATACATTGATAAGATAAAAGTGATTGATGAGATTGGGACTGCTGATAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | AGAGGCCATGACTTAAACCCATCTACAATACCACAACAGACAAGGGTTCTGAAGCTAGGTGGCGGAGCCTaGGGTTTCGCTTTTCCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RGHDLNPSTIPQQTRVLKLGGGA*GFAFPK Trigger: CTTCGGAAAAGCGAAACCCAAGGCTCCGCCACCTAG...CTTCAGAACCCTTGTCTGTTGTGGTATTGTAGATGGGTTTAAGTCATGGCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | GCAGATCGGGAACTATTTCCTAGTCCCAGAATACTTCTCTTGTTGTTTCACATCGACTGTTGGGCCAGGTaGTCTCGCTGTTGCTCATAC | + |
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Preference number: 5 (lower is better) Translates to: ADRELFPSPRILLLLFHIDCWAR*SRCCSY Trigger: GTATGAGCAACAGCGAGACAACCTGGCCCAACAGTC...GATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | CAGATCGGGAACTATTTCCTAGTCCCAGAATACTTCTCTTGTTGTTTCACATCAGAACACCTTCCGGAATaGCAGGAGCGGAAGCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: QIGNYFLVPEYFSCCFTSEHLPE*QERKLP Trigger: AGGCAGCTTCCGCTCCTGCAATTCCGGAAGGTGTTC...TGATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | GCAGATCGGGAACTATTTCCTAGTCCCAGAATACTTCTCTTGTTGTTTCACATCCAGGTTGTCTCGCTGTaGCTCATACATCCGCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: ADRELFPSPRILLLLFHIQVVSL*LIHPLL Trigger: CAAAAGCGGATGTATGAGCAACAGCGAGACAACCTG...GATGTGAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | CTATCAGCAGTCCCAATCTCATCAATCACTTTTATCTTATCAATGTATCAGCACCATGTTAAAGGACTGTaGGGCCAGGTTGTCTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: LSAVPISSITFILSMYQHHVKGL*GQVVSL Trigger: CAGCGAGACAACCTGGCCCAACAGTCCTTTAACATG...GTGCTGATACATTGATAAGATAAAAGTGATTGATGAGATTGGGACTGCTGATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | GCAGTCCCAATCTCATCAATCACTTTTATCTTATCAATGTATCAGCACACTGAGCTCAGGGCTTTCTGTTaGACCATGTTCTTAGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: AVPISSITFILSMYQHTELRAFC*TMFLAG Trigger: TCCTGCTAAGAACATGGTCAAACAGAAAGCCCTGAG...CTCAGTGTGCTGATACATTGATAAGATAAAAGTGATTGATGAGATTGGGACTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS-3UTR CAA 90 bp | TACTATCAGCAGTCCCAATCTCATCAATCACTTTTATCTTATCAATGTATCAGCGATGGTGTAATTAGCTaGCTCCATGTTAAAGGACTG | + |
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Preference number: 5 (lower is better) Translates to: YYQQSQSHQSLLSYQCISDGVIS*LHVKGL Trigger: CAGTCCTTTAACATGGAGCAAGCTAATTACACCATC...GCTGATACATTGATAAGATAAAAGTGATTGATGAGATTGGGACTGCTGATAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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| CDS GCA 72 bp | ACTCTGCTTCCAGGTCGTCCTCATCTAACTCTGGGGTaGCGTAGCTGCGGCCCAGGGCTTCCTGGATCTCAT | + |
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Preference number: 6 (lower is better) Translates to: TLLPGRPHLTLG*RSCGPGLPGSH Trigger: ATGAGATCCAGGAAGCCCTGGGCCGCAGCTACGGCACCCCAGAGTTAGATGAGGACGACCTGGAAGCAGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030128.6 |
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