RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHMP4C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027536

Ensembl transcript IDs: ENSMUST00000029049.7, ENSMUST00000191826.2

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCACACCCTGGGGAGCACCGCCCACAAGTGCTCACTCAGCTCCCTaGGTGGCTAACCACACCCCCGGGAGCACCGCTCAGCACACTACG +
Preference number: 1 (lower is better)
Translates to: TTPWGAPPTSAHSAP*VANHTPGSTAQHTT
Trigger: CGTAGTGTGCTGAGCGGTGCTCCCGGGGGTGTGGTTAGCCACTCAGGGAGCTGAGTGAGCACTTGTGGGCGGTGCTCCCCAGGGTGTGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp CACCCTGGGGAGCACCGCCCACAAGTGCTCACTCAGCTCCCTGAGTaGCTAACCACACCCCCGGGAGCACCGCTCAGCACACTACGCTGT +
Preference number: 1 (lower is better)
Translates to: HPGEHRPQVLTQLPE*LTTPPGAPLSTLRC
Trigger: ACAGCGTAGTGTGCTGAGCGGTGCTCCCGGGGGTGTGGTTAGCCACTCAGGGAGCTGAGTGAGCACTTGTGGGCGGTGCTCCCCAGGGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp GAGCACCACTCCCAAGTGCTCACTCAGCTTCCTGACCACACCCCCTaGAGCACCGCCCCCAAGTGCTCACTCAGCTTCCTGACCACACCC +
Preference number: 1 (lower is better)
Translates to: EHHSQVLTQLPDHTP*STAPKCSLSFLTTP
Trigger: GGGTGTGGTCAGGAAGCTGAGTGAGCACTTGGGGGCGGTGCTCCAGGGGGTGTGGTCAGGAAGCTGAGTGAGCACTTGGGAGTGGTGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp ATGTATGCCCTGCAGGGCAGAAAGAATGCCAAGACAAACAGCCAGTaGCAAGCACCTGTGGCAGAATGGCAGCCATGGGGTCATCCACTC +
Preference number: 1 (lower is better)
Translates to: MYALQGRKNAKTNSQ*QAPVAEWQPWGHPL
Trigger: GAGTGGATGACCCCATGGCTGCCATTCTGCCACAGGTGCTTGGCACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCTGCAGGGCATACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp CCCCAGCAGTTGGTTCCTTTAGCCAGTCCTTCCCTCAGGCGTGTTTaGAGATCCAGCCTTGAAGGGACCTCTCTACCCATGTGCTTTATT +
Preference number: 1 (lower is better)
Translates to: PQQLVPLASPSLRRV*RSSLEGTSLPMCFI
Trigger: AATAAAGCACATGGGTAGAGAGGTCCCTTCAAGGCTGGATCTGCAAACACGCCTGAGGGAAGGACTGGCTAAAGGAACCAACTGCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp AGGGCAGAAAGAATGCCAAGACAAACAGCCAGTGCCAAGCACCTGTaGCAGAATGGCAGCCATGGGGTCATCCACTCTAACACTCAGACT +
Preference number: 1 (lower is better)
Translates to: RAERMPRQTASAKHL*QNGSHGVIHSNTQT
Trigger: AGTCTGAGTGTTAGAGTGGATGACCCCATGGCTGCCATTCTGCCACAGGTGCTTGGCACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp ACACTATTAGGAGGTGTGGCCTTGTTGGAGTTAGTCTGTCCTTGTTaGAGGAAGTGTGACAGTGTGGGGGATCCTCCTCCTAGCTGCCTG +
Preference number: 1 (lower is better)
Translates to: TLLGGVALLELVCPC*RKCDSVGDPPPSCL
Trigger: CAGGCAGCTAGGAGGAGGATCCCCCACACTGTCACACTTCCTCCAACAAGGACAGACTAACTCCAACAAGGCCACACCTCCTAATAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp GAGCCTGTATCGGCTGACATCATTCTGCCAATCGGTCCAAGTCCCTaGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTTGGTGC +
Preference number: 1 (lower is better)
Translates to: EPVSADIILPIGPSP*KEQEAARETPGFWC
Trigger: GCACCAAAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGATTGGCAGAATGATGTCAGCCGATACAGGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp TGCCTAGAAAAACTCCACAAGAGCCTGTATCGGCTGACATCATTCTaGCAATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAG +
Preference number: 1 (lower is better)
Translates to: CLEKLHKSLYRLTSF*QSVQVPGRSKKLPE
Trigger: CTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGATTGGCAGAATGATGTCAGCCGATACAGGCTCTTGTGGAGTTTTTCTAGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp TCAAGAACGTATTCCTCAGTCAGCAAGCCTGAGGAGGACTCACACTaGGTCAGAGACTACCGTCTGGCCATCTTCTTGCATGGAGAAAGC +
Preference number: 1 (lower is better)
Translates to: SRTYSSVSKPEEDSH*VRDYRLAIFLHGES
Trigger: GCTTTCTCCATGCAAGAAGATGGCCAGACGGTAGTCTCTGACCCAGTGTGAGTCCTCCTCAGGCTTGCTGACTGAGGAATACGTTCTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp GTTAGCCAGAAACTAGAGTATGTATGCCCTGCAGGGCAGAAAGAATaGCAAGACAAACAGCCAGTGCCAAGCACCTGTGGCAGAATGGCA +
Preference number: 1 (lower is better)
Translates to: VSQKLEYVCPAGQKE*QDKQPVPSTCGRMA
Trigger: TGCCATTCTGCCACAGGTGCTTGGCACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCTGCAGGGCATACATACTCTAGTTTCTGGCTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 90 bp CTAAACCCTACAAATGTCAAGAACGTATTCCTCAGTCAGCAAGCCTaGGGAGGACTCACACTGGGTCAGAGACTACCGTCTGGCCATCTT +
Preference number: 1 (lower is better)
Translates to: LNPTNVKNVFLSQQA*GGLTLGQRLPSGHL
Trigger: AAGATGGCCAGACGGTAGTCTCTGACCCAGTGTGAGTCCTCCTCAGGCTTGCTGACTGAGGAATACGTTCTTGACATTTGTAGGGTTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp CATCATTCTGCCAATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTaGCAGAGAAACACCAGGTTTTTGGTGCATTTCGTTCCACGAAGT +
Preference number: 1 (lower is better)
Translates to: HHSANRSKSLEGARS*QRNTRFLVHFVPRS
Trigger: ACTTCGTGGAACGAAATGCACCAAAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGATTGGCAGAATGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp GGACTGTTCAAATGGGTGGAGGGAACACCAGAGCATCACACAGCATaGGATTTGTCATTTCACTGCTGTGATATGGCACGAGTGACACCT +
Preference number: 1 (lower is better)
Translates to: GLFKWVEGTPEHHTA*DLSFHCCDMARVTP
Trigger: AGGTGTCACTCGTGCCATATCACAGCAGTGAAATGACAAATCCCATGCTGTGTGATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp TCAGCAAGCCTGAGGAGGACTCACACTGGGTCAGAGACTACCGTCTaGCCATCTTCTTGCATGGAGAAAGCTTATGAACAAACTCCTTCA +
Preference number: 1 (lower is better)
Translates to: SASLRRTHTGSETTV*PSSCMEKAYEQTPS
Trigger: TGAAGGAGTTTGTTCATAAGCTTTCTCCATGCAAGAAGATGGCCAGACGGTAGTCTCTGACCCAGTGTGAGTCCTCCTCAGGCTTGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp GTCCTTAGAACCTGGAGCATCACTGTATGTGTCAAGAGCAGAAGGTaGACAGATCCTAAGGGTGGAGCCCTCTGTACTTCAAGTCAATCG +
Preference number: 1 (lower is better)
Translates to: VLRTWSITVCVKSRR*TDPKGGALCTSSQS
Trigger: CGATTGACTTGAAGTACAGAGGGCTCCACCCTTAGGATCTGTCCACCTTCTGCTCTTGACACATACAGTGATGCTCCAGGTTCTAAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 90 bp GGTAAACCTCATCAGTCAGTCAGTCGATGTGCATTGAGGACGTATTaGCAGACTGACTGCCTGCTGGACATACGAGATTTTGAAGAGCCC +
Preference number: 1 (lower is better)
Translates to: GKPHQSVSRCALRTY*QTDCLLDIRDFEEP
Trigger: GGGCTCTTCAAAATCTCGTATGTCCAGCAGGCAGTCAGTCTGTCAATACGTCCTCAATGCACATCGACTGACTGACTGATGAGGTTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 90 bp AGCACATCCTTAAAGGACCAACTGCCTAAACCCATTTTGGTGGTTTaGATAAGCTTGGACCAGGGAGGGACACTATTAGGAGGTGTGGCC +
Preference number: 1 (lower is better)
Translates to: STSLKDQLPKPILVV*ISLDQGGTLLGGVA
Trigger: GGCCACACCTCCTAATAGTGTCCCTCCCTGGTCCAAGCTTATTCAAACCACCAAAATGGGTTTAGGCAGTTGGTCCTTTAAGGATGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp CTCCTTCAAGTTCAAATTCCATCACTATTCCCACCCCAGAGGTCCTaGTCTTGTGACCCAAGCACATCCTTAAAGGACCAACTGCCTAAA +
Preference number: 1 (lower is better)
Translates to: LLQVQIPSLFPPQRS*SCDPSTSLKDQLPK
Trigger: TTTAGGCAGTTGGTCCTTTAAGGATGTGCTTGGGTCACAAGAGCAGGACCTCTGGGGTGGGAATAGTGATGGAATTTGAACTTGAAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp GTCCTATTTATATCCCTCCAAACATCACAAGTCCTCCACAGGTTTTaGCTCAGCACATGTGTTGCCTCAGTGGGTGAGTCTTGCCTAGAA +
Preference number: 1 (lower is better)
Translates to: VLFISLQTSQVLHRF*LSTCVASVGESCLE
Trigger: TTCTAGGCAAGACTCACCCACTGAGGCAACACATGTGCTGAGGCAAAACCTGTGGAGGACTTGTGATGTTTGGAGGGATATAAATAGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp CCAAATCAGCATGAGACACCAACAGAGACACCAGGAGAAGTTCTTTaGTGTGTCTCTCTCAACCACGTGAAGATCAGCGAAGAATTGAGA +
Preference number: 1 (lower is better)
Translates to: PNQHETPTETPGEVL*CVSLNHVKISEELR
Trigger: TCTCAATTCTTCGCTGATCTTCACGTGGTTGAGAGAGACACAGCAAAGAACTTCTCCTGGTGTCTCTGTTGGTGTCTCATGCTGATTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 90 bp GTCAGAGACTACCGTCTGGCCATCTTCTTGCATGGAGAAAGCTTATaGACAAACTCCTTCAAGTTCAAATTCCATCACTATTCCCACCCC +
Preference number: 1 (lower is better)
Translates to: VRDYRLAIFLHGESL*TNSFKFKFHHYSHP
Trigger: GGGGTGGGAATAGTGATGGAATTTGAACTTGAAGGAGTTTGTTCATAAGCTTTCTCCATGCAAGAAGATGGCCAGACGGTAGTCTCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 90 bp TTTGCTGCTCAGGCTGCTGTCCTCTGCCATCATTCTGAATTGTGTTaGTTGTGCTATGCTCTGTCTGTATGTAACAGGAAACTTGTGGGT +
Preference number: 1 (lower is better)
Translates to: FAAQAAVLCHHSELC*LCYALSVCNRKLVG
Trigger: ACCCACAAGTTTCCTGTTACATACAGACAGAGCATAGCACAATCAACACAATTCAGAATGATGGCAGAGGACAGCAGCCTGAGCAGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 90 bp GATCTAATTAGGCTGGAAAATGTTAGCCAGAAACTAGAGTATGTATaGCCTGCAGGGCAGAAAGAATGCCAAGACAAACAGCCAGTGCCA +
Preference number: 1 (lower is better)
Translates to: DLIRLENVSQKLEYV*PAGQKECQDKQPVP
Trigger: TGGCACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCTGCAGGGCATACATACTCTAGTTTCTGGCTAACATTTTCCAGCCTAATTAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp CGGTTCTTTCTGATTTCCCCAGTCTCTTCTTGTTCTTTGTCTGTTTaGAGTCAGATCTCTTGCTGTGCTCCACTTAGACACCTCGTTTCT +
Preference number: 1 (lower is better)
Translates to: RFFLISPVSSCSLSV*SQISCCAPLRHLVS
Trigger: AGAAACGAGGTGTCTAAGTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGAGACTGGGGAAATCAGAAAGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp GAAGCCCTCACCAGAGTCAGCACTATGCATGTGGACTTCCCGGTCTaGAAAACTGTAAGTCAAATTAGGTCTTTTGTGATTTATCCAGTC +
Preference number: 1 (lower is better)
Translates to: EALTRVSTMHVDFPV*KTVSQIRSFVIYPV
Trigger: GACTGGATAAATCACAAAAGACCTAATTTGACTTACAGTTTTCCAGACCGGGAAGTCCACATGCATAGTGCTGACTCTGGTGAGGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 90 bp AAGGGTGGAGCCCTCTGTACTTCAAGTCAATCGGGATGTCTTGGATaGAGAATATGTTCATCATTGAAGGGAGTCAATACAGGAATTCAA +
Preference number: 1 (lower is better)
Translates to: KGGALCTSSQSGCLG*RICSSLKGVNTGIQ
Trigger: TTGAATTCCTGTATTGACTCCCTTCAATGATGAACATATTCTTCATCCAAGACATCCCGATTGACTTGAAGTACAGAGGGCTCCACCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 90 bp TGGACACTGCCATGTTCCCGCCTTGATGATAATGGACTGAACCTCTaGATCTATAAGACAGCCTCAATTAAATGTAGTCCTTATAAGAGT +
Preference number: 1 (lower is better)
Translates to: WTLPCSRLDDNGLNL*IYKTASIKCSPYKS
Trigger: ACTCTTATAAGGACTACATTTAATTGAGGCTGTCTTATAGATTCAGAGGTTCAGTCCATTATCATCAAGGCGGGAACATGGCAGTGTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 90 bp TCACTTTTATCTAACTGTAGGTGCTTCATAGGCAGAATTGGTAGCTaGGGCTATAATTTCTACATCACTGGTAATCCTGGTCTCCTTTGT +
Preference number: 1 (lower is better)
Translates to: SLLSNCRCFIGRIGS*GYNFYITGNPGLLC
Trigger: ACAAAGGAGACCAGGATTACCAGTGATGTAGAAATTATAGCCCCAGCTACCAATTCTGCCTATGAAGCACCTACAGTTAGATAAAAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 90 bp CAGTGTTTTTCTCCTTTTAAACTCTTTAATCTACCAGTTAAACCTTaGGAAGTCCTGCGGGAAAGTAGCTTTCAGACATTGCACCAGACT +
Preference number: 1 (lower is better)
Translates to: QCFSPFKLFNLPVKP*EVLRESSFQTLHQT
Trigger: AGTCTGGTGCAATGTCTGAAAGCTACTTTCCCGCAGGACTTCTCAAGGTTTAACTGGTAGATTAAAGAGTTTAAAAGGAGAAAAACACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 90 bp GTGCTGGGAACAGCATGGAATTTGATTTGTCAAAGTGTGGTTATTTaGACAGTCTCACTTAAAACACAGCTGTCCTACACTAACATCATT +
Preference number: 1 (lower is better)
Translates to: VLGTAWNLICQSVVI*TVSLKTQLSYTNII
Trigger: AATGATGTTAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAATAACCACACTTTGACAAATCAAATTCCATGCTGTTCCCAGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 90 bp AATCCGGAAGGGTCTCCTATAATGCTACGGGCCCCTTTCCATCTCTaGCTATCCCTTAACTGTTACTTAAAAGACAATAATTCATATAAA +
Preference number: 1 (lower is better)
Translates to: NPEGSPIMLRAPFHL*LSLNCYLKDNNSYK
Trigger: TTTATATGAATTATTGTCTTTTAAGTAACAGTTAAGGGATAGTCAGAGATGGAAAGGGGCCCGTAGCATTATAGGAGACCCTTCCGGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 90 bp GTCAGCATGAGACACAGCTCTAAACACAAGCATTTGCATATAGGTTaGTGGAGTGTCATAAAGAAAGTTAACACGAGTCTAGATAATTGT +
Preference number: 1 (lower is better)
Translates to: VSMRHSSKHKHLHIG*WSVIKKVNTSLDNC
Trigger: ACAATTATCTAGACTCGTGTTAACTTTCTTTATGACACTCCAGCAACCTATATGCAAATGCTTGTGTTTAGAGCTGTGTCTCATGCTGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CCA 90 bp AGCATGAGACACAGCTCTAAACACAAGCATTTGCATATAGGTTGCTaGAGTGTCATAAAGAAAGTTAACACGAGTCTAGATAATTGTTTT +
Preference number: 1 (lower is better)
Translates to: SMRHSSKHKHLHIGC*SVIKKVNTSLDNCF
Trigger: AAAACAATTATCTAGACTCGTGTTAACTTTCTTTATGACACTCCAGCAACCTATATGCAAATGCTTGTGTTTAGAGCTGTGTCTCATGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp TCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCCATGTTCCCGCCTTGATGGCTCACTCAGCTTCCTaGCCACACCCCCTGGAGCAC +
Preference number: 2 (lower is better)
Translates to: SAPPELCLPGHCHVPALMAHSAS*PHPLEH
Trigger: GTGCTCCAGGGGGTGTGGTCAGGAAGCTGAGTGAGC...CATCAAGGCGGGAACATGGCAGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp AGAGGCCTTCAGATGAACTCTCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCTCACTCAGCTTCCTaGCCACACCCTGGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: RGLQMNSQLLPSYACLDTAHSAS*PHPGEH
Trigger: GTGCTCCCCAGGGTGTGGTCAGGAAGCTGAGTGAGC...AGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGAGAGTTCATCTGAAGGCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp AGAGGCCTTCAGATGAACTCTCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTAGCACCACTCCCAAGTaGTCACTCAGCTTCCTGACC +
Preference number: 2 (lower is better)
Translates to: RGLQMNSQLLPSYACLDTSTTPK*SLSFLT
Trigger: GGTCAGGAAGCTGAGTGAGCACTTGGGAGTGGTGCT...AGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGAGAGTTCATCTGAAGGCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp TCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCCATGTTCCCGCCTTGATGAAGACAAACAGCCAGTaGCAAGCACCTGTGGCAGAA +
Preference number: 2 (lower is better)
Translates to: SAPPELCLPGHCHVPALMKTNSQ*QAPVAE
Trigger: TTCTGCCACAGGTGCTTGGCACTGGCTGTTTGTCTT...CATCAAGGCGGGAACATGGCAGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp TCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCCATGTTCCCGCCTTGATGGGACATACGAGATTTTaGAGAGCCCTGGAAATAGAC +
Preference number: 2 (lower is better)
Translates to: SAPPELCLPGHCHVPALMGHTRF*RALEID
Trigger: GTCTATTTCCAGGGCTCTTCAAAATCTCGTATGTCC...CATCAAGGCGGGAACATGGCAGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp AACAGGCACTGTGACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGTCTCCTCCTAGCTGCCTaGAGTCAATCTTCTCCTAGA +
Preference number: 2 (lower is better)
Translates to: NRHCDLWRWSVHMSPAVGLLLAA*SQSSPR
Trigger: TCTAGGAGAAGATTGACTTCAGGCAGCTAGGAGGAG...ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp AGGTGCTTCATAGGCAGAATTGGTAGCTGGGGCTATAATTTCTACATCACTGGTCCTAGGGGCAGGAGCTaGTGCAGGGGCCATGGAAAG +
Preference number: 2 (lower is better)
Translates to: RCFIGRIGSWGYNFYITGPRGRS*CRGHGK
Trigger: CTTTCCATGGCCCCTGCATCAGCTCCTGCCCCTAGG...ACCAGTGATGTAGAAATTATAGCCCCAGCTACCAATTCTGCCTATGAAGCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR GCA 90 bp AACAGGCACTGTGACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGTGGGAGATTCATCCATTaGTCCACTCAAAGCTCAACC +
Preference number: 2 (lower is better)
Translates to: NRHCDLWRWSVHMSPAVGGRFIH*STQSST
Trigger: GGTTGAGCTTTGAGTGGAGCAATGGATGAATCTCCC...ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp AACAGGCACTGTGACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGTAGAGTATGTATGCCCTaGAGGGCAGAAAGAATGCCA +
Preference number: 2 (lower is better)
Translates to: NRHCDLWRWSVHMSPAVGRVCMP*RAERMP
Trigger: TGGCATTCTTTCTGCCCTGCAGGGCATACATACTCT...ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp ACCAGGAGAAGTTCTTTGCTGTGTCTCTCTCAACCACGTGAAGATCAGCGAAGAGCACCTGTGGCAGAATaGCAGCCATGGGGTCATCCA +
Preference number: 2 (lower is better)
Translates to: TRRSSLLCLSQPREDQRRAPVAE*QPWGHP
Trigger: TGGATGACCCCATGGCTGCCATTCTGCCACAGGTGC...TCTTCGCTGATCTTCACGTGGTTGAGAGAGACACAGCAAAGAACTTCTCCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp CTTGATTCAGCTGCACACAGGGAAGATGGTCCATGTGTCCTTCTCCCCAAACGGGTCAAGAGCAGAAGGTaGACAGATCCTAAGGGTGGA +
Preference number: 2 (lower is better)
Translates to: LDSAAHREDGPCVLLPKRVKSRR*TDPKGG
Trigger: TCCACCCTTAGGATCTGTCCACCTTCTGCTCTTGAC...CCGTTTGGGGAGAAGGACACATGGACCATCTTCCCTGTGTGCAGCTGAATCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp CAGTCTCTTCTTGTTCTTTGTCTGTTTGCAGTCAGATCTCTTGCTGTGCTCCACCCTGGGAACTGGAGATaGGGAACAGGCACTGTGACC +
Preference number: 2 (lower is better)
Translates to: QSLLVLCLFAVRSLAVLHPGNWR*GTGTVT
Trigger: GGTCACAGTGCCTGTTCCTCATCTCCAGTTCCCAGG...GTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGAGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTGACTGTTCAAATGGGTaGAGGGAACACCAGAGCATC +
Preference number: 2 (lower is better)
Translates to: IGPSPWKEQEAARETPGFDCSNG*REHQSI
Trigger: GATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTC...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 90 bp AAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTaGGTGCATTTCGTTCCACGAAGTCACAACAAGCAGAGCTCAGCA +
Preference number: 2 (lower is better)
Translates to: KSLEGARSCQRNTRF*VHFVPRSHNKQSSA
Trigger: TGCTGAGCTCTGCTTGTTGTGACTTCGTGGAACGAAATGCACCAAAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp GAATCTATAAGACAGCCTCAATTAAATGTAGTCCTTATAAGAGTTGGGGTGGTCGCTCACTCAGCTTCCTaGCCACACCCCCGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: ESIRQPQLNVVLIRVGVVAHSAS*PHPREH
Trigger: GTGCTCCCGGGGGTGTGGTCAGGAAGCTGAGTGAGC...GACCACCCCAACTCTTATAAGGACTACATTTAATTGAGGCTGTCTTATAGATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGAGTTCACTCAGCTTCCTaGCCACACCCCCGGGAACAC +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRVHSAS*PHPREH
Trigger: GTGTTCCCGGGGGTGTGGTCAGGAAGCTGAGTGAAC...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp AATACAGAGTGGCATGCCCCCAGTTTAGTGTGTCAGTTAACCATATATGTCCTTCTAGGCCCCACGCAGTaGAAGGAGAGAACTGACTCC +
Preference number: 2 (lower is better)
Translates to: NTEWHAPSLVCQLTIYVLLGPTQ*KERTDS
Trigger: GGAGTCAGTTCTCTCCTTCCACTGCGTGGGGCCTAG...AAGGACATATATGGTTAACTGACACACTAAACTGGGGGCATGCCACTCTGTATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp AGGTGCTTCATAGGCAGAATTGGTAGCTGGGGCTATAATTTCTACATCACTGGTAGGACTGCCAGCCCATaGATGACATCACCCACAGTG +
Preference number: 2 (lower is better)
Translates to: RCFIGRIGSWGYNFYITGRTASP*MTSPTV
Trigger: CACTGTGGGTGATGTCATCCATGGGCTGGCAGTCCT...ACCAGTGATGTAGAAATTATAGCCCCAGCTACCAATTCTGCCTATGAAGCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp CTTGATTCAGCTGCACACAGGGAAGATGGTCCATGTGTCCTTCTCCCCAAACGGCATTCTGAATTGTGTTaGTTGTGCTATGCTCTGTCT +
Preference number: 2 (lower is better)
Translates to: LDSAAHREDGPCVLLPKRHSELC*LCYALS
Trigger: AGACAGAGCATAGCACAATCAACACAATTCAGAATG...CCGTTTGGGGAGAAGGACACATGGACCATCTTCCCTGTGTGCAGCTGAATCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGAAGTGCCAAGCACCTGTaGCAGAATGGCAGCCATGGG +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRSAKHL*QNGSHG
Trigger: CCCATGGCTGCCATTCTGCCACAGGTGCTTGGCACT...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp GTCAAAGTGTGGTTATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTAGCTGTGAGTGGGGAGTaGTGTGACGCAGTGTGCAAG +
Preference number: 2 (lower is better)
Translates to: VKVWLFAQSHLKHSCPTLAVSGE*CDAVCK
Trigger: CTTGCACACTGCGTCACACCACTCCCCACTCACAGC...TAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAATAACCACACTTTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 90 bp GCTATGCGCTCTTTCTCGGTTCTTTCTGATTTCCCCAGTCTCTTCTaGTTCTTTGTCTGTTTGCAGTCAGATCTCTTGCTGTGCTCCACT +
Preference number: 2 (lower is better)
Translates to: AMRSFSVLSDFPSLF*FFVCLQSDLLLCST
Trigger: AGTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGAGACTGGGGAAATCAGAAAGAACCGAGAAAGAGCGCATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp AGCCTTGCAGTGAGAGAATTTCTTTGTCTGGATGATCCACCAGGTCCATTTGATTATAGAACCCAGGACTaGCAGCCCATGGATGACATC +
Preference number: 2 (lower is better)
Translates to: SLAVREFLCLDDPPGPFDYRTQD*QPMDDI
Trigger: GATGTCATCCATGGGCTGGCAGTCCTGGGTTCTATA...ATCAAATGGACCTGGTGGATCATCCAGACAAAGAAATTCTCTCACTGCAAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTGGCCATCTTCTTGCATaGAGAAAGCTTATGAACAAA +
Preference number: 2 (lower is better)
Translates to: IGPSPWKEQEAARETPGFGHLLA*RKLMNK
Trigger: TTTGTTCATAAGCTTTCTCCATGCAAGAAGATGGCC...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 90 bp GCTCTTTCTCGGTTCTTTCTGATTTCCCCAGTCTCTTCTTGTTCTTaGTCTGTTTGCAGTCAGATCTCTTGCTGTGCTCCACTTAGACAC +
Preference number: 2 (lower is better)
Translates to: ALSRFFLISPVSSCS*SVCSQISCCAPLRH
Trigger: GTGTCTAAGTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGAGACTGGGGAAATCAGAAAGAACCGAGAAAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTACAAAGTGCAAGCTGTaGAGTGTTTGGATTTTGTTT +
Preference number: 2 (lower is better)
Translates to: IGPSPWKEQEAARETPGFTKCKL*SVWILF
Trigger: AAACAAAATCCAAACACTTCACAGCTTGCACTTTGT...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp CTTGATTCAGCTGCACACAGGGAAGATGGTCCATGTGTCCTTCTCCCCAAACGGATCTACAAAATTGTTTaGCTCACACACTGTATAGCT +
Preference number: 2 (lower is better)
Translates to: LDSAAHREDGPCVLLPKRIYKIV*LTHCIA
Trigger: AGCTATACAGTGTGTGAGGCAAACAATTTTGTAGAT...CCGTTTGGGGAGAAGGACACATGGACCATCTTCCCTGTGTGCAGCTGAATCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp TACAAATGTCAAGAACGTATTCCTCAGTCAGCAAGCCTGAGGAGGACTCACACTTTCCCAATCAATCCATaGGACTGTTCAAATGGGTGG +
Preference number: 2 (lower is better)
Translates to: YKCQERIPQSASLRRTHTFPINP*DCSNGW
Trigger: CCACCCATTTGAACAGTCCCATGGATTGATTGGGAA...AGTGTGAGTCCTCCTCAGGCTTGCTGACTGAGGAATACGTTCTTGACATTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp CAGTCTCTTCTTGTTCTTTGTCTGTTTGCAGTCAGATCTCTTGCTGTGCTCCACTTAGTCTGTCCTTGTTaGAGGAAGTGTGACAGTGTG +
Preference number: 2 (lower is better)
Translates to: QSLLVLCLFAVRSLAVLHLVCPC*RKCDSV
Trigger: CACACTGTCACACTTCCTCCAACAAGGACAGACTAA...GTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGAGACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp AGGTGCTTCATAGGCAGAATTGGTAGCTGGGGCTATAATTTCTACATCACTGGTGGGGGTTACTCCGATTaGTTCAGAGAGCTGAATGAA +
Preference number: 2 (lower is better)
Translates to: RCFIGRIGSWGYNFYITGGGYSD*FRELNE
Trigger: TTCATTCAGCTCTCTGAACCAATCGGAGTAACCCCC...ACCAGTGATGTAGAAATTATAGCCCCAGCTACCAATTCTGCCTATGAAGCACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 90 bp AATCTTGCCCTATTGGCAAACTCAAGGTCAGTAAGAGACTTTGTCTaGGAAAATGAGGAGCAGGCCAGTGATAGGTCACTGAGTTACTGT +
Preference number: 2 (lower is better)
Translates to: NLALLANSRSVRDFV*ENEEQASDRSLSYC
Trigger: ACAGTAACTCAGTGACCTATCACTGGCCTGCTCCTCATTTTCCAAGACAAAGTCTCTTACTGACCTTGAGTTTGCCAATAGGGCAAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGAATGTGGTCTCACCCCTaGCCTTACCATGCTCTCTTT +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRMWSHP*PYHALF
Trigger: AAAGAGAGCATGGTAAGGTCAGGGGTGAGACCACAT...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGAGAGGTCCTGCTCTTGTaGCCCAAGCACATCCTTAAA +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCREVLLL*PKHILK
Trigger: TTTAAGGATGTGCTTGGGTCACAAGAGCAGGACCTC...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp ATAGACATAGCAAGGGCAGTCTTTAAGGTATTTCAGAGTAAAGGCTTCTTAGACGTGGAAGGAGAGAACTaGCTCCCTTCAGTCATGCAC +
Preference number: 2 (lower is better)
Translates to: IDIARAVFKVFQSKGFLDVEGEN*LPSVMH
Trigger: GTGCATGACTGAAGGGAGTCAGTTCTCTCCTTCCAC...GTCTAAGAAGCCTTTACTCTGAAATACCTTAAAGACTGCCCTTGCTATGTCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR GCA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCGCAGGGCAGAAAGAATaGCAAGACAAACAGCCAGTG +
Preference number: 2 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVAGQKE*QDKQPV
Trigger: CACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCTGC...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp CGAATTGAATGTGTTCAGAGAGGCCTGGTCTTCAAGAAAGTACTTAACTTAACCCTGGCCAGCCAATCTTaGCCTATTGGCAAACTCAAG +
Preference number: 2 (lower is better)
Translates to: RIECVQRGLVFKKVLNLTLASQS*PIGKLK
Trigger: CTTGAGTTTGCCAATAGGGCAAGATTGGCTGGCCAG...GGTTAAGTTAAGTACTTTCTTGAAGACCAGGCCTCTCTGAACACATTCAATTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCATGGGACTGTTCAAATaGGTGGAGGGAACACCAGAG +
Preference number: 2 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVMGLFK*VEGTPE
Trigger: CTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCAT...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGATCAGAGACTACCGTCTaGCCATCTTCTTGCATGGAG +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRSETTV*PSSCME
Trigger: CTCCATGCAAGAAGATGGCCAGACGGTAGTCTCTGA...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp CAGTCTCTTCTTGTTCTTTGTCTGTTTGCAGTCAGATCTCTTGCTGTGCTCCACAGTTTTCAATATAGGTaGAATTTGGCCTCCTGCCCT +
Preference number: 2 (lower is better)
Translates to: QSLLVLCLFAVRSLAVLHSFQYR*NLASCP
Trigger: AGGGCAGGAGGCCAAATTCCACCTATATTGAAAACT...GTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTTCTAGCATTTCAGCTTaGGTAATTTTTAAGGACATC +
Preference number: 2 (lower is better)
Translates to: IGPSPWKEQEAARETPGFSSISA*VIFKDI
Trigger: GATGTCCTTAAAAATTACCCAAGCTGAAATGCTAGA...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp ATGATCCACCAGGTCCATTTGATAGCCAGTAATCCCAGCTCCAGTAGGTGGATCTCAATCGGGATGTCTTaGATGAAGAATATGTTCATC +
Preference number: 2 (lower is better)
Translates to: MIHQVHLIASNPSSSRWISIGMS*MKNMFI
Trigger: GATGAACATATTCTTCATCCAAGACATCCCGATTGA...GATCCACCTACTGGAGCTGGGATTACTGGCTATCAAATGGACCTGGTGGATCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp ATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTAACATCATTTCATCCTGCACACAGGGAAGATaGTCCATGTGTCCTTCTCCC +
Preference number: 2 (lower is better)
Translates to: ICTVSLKTQLSYTNIISSCTQGR*SMCPSP
Trigger: GGGAGAAGGACACATGGACCATCTTCCCTGTGTGCA...GGATGAAATGATGTTAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp GAATCTATAAGACAGCCTCAATTAAATGTAGTCCTTATAAGAGTTGGGGTGGTCGTCATTTCACTGCTGTaGTATGGCACGAGTGACACC +
Preference number: 2 (lower is better)
Translates to: ESIRQPQLNVVLIRVGVVVISLL*YGTSDT
Trigger: GGTGTCACTCGTGCCATATCACAGCAGTGAAATGAC...GACCACCCCAACTCTTATAAGGACTACATTTAATTGAGGCTGTCTTATAGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp AGACTGACTGCCTGCTGGACATACGAGATTTTGAAGAGCCCTGGAAATAGACTAACAGAGCAAGCAGGATaGAAAACAAACCAACAAACA +
Preference number: 2 (lower is better)
Translates to: RLTACWTYEILKSPGNRLTEQAG*KTNQQT
Trigger: TGTTTGTTGGTTTGTTTTGCATCCTGCTTGCTCTGT...TAGTCTATTTCCAGGGCTCTTCAAAATCTCGTATGTCCAGCAGGCAGTCAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp ATAGACATAGCAAGGGCAGTCTTTAAGGTATTTCAGAGTAAAGGCTTCTTAGACGCTTACTGGCTTAATTaGTCTGGCTTGCTCAGCCTG +
Preference number: 2 (lower is better)
Translates to: IDIARAVFKVFQSKGFLDAYWLN*SGLLSL
Trigger: CAGGCTGAGCAAGCCAGAGCAATTAAGCCAGTAAGC...GTCTAAGAAGCCTTTACTCTGAAATACCTTAAAGACTGCCCTTGCTATGTCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCGAGAATAAGCAGTGTTaGGAACAGCCCCCAAGTGTT +
Preference number: 2 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVENKQC*EQPPSV
Trigger: AACACTTGGGGGCTGTTCCCAACACTGCTTATTCTC...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 90 bp GAGAAGAGGCTTGTCAGCATGAGACACAGCTCTAAACACAAGCATTaGCATATAGGTTGCTGGAGTGTCATAAAGAAAGTTAACACGAGT +
Preference number: 2 (lower is better)
Translates to: EKRLVSMRHSSKHKH*HIGCWSVIKKVNTS
Trigger: ACTCGTGTTAACTTTCTTTATGACACTCCAGCAACCTATATGCAAATGCTTGTGTTTAGAGCTGTGTCTCATGCTGACAAGCCTCTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGATATTTTTACTCTGCATaGCCTGGATGCACACAGCTG +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRYFYSA*PGCTQL
Trigger: CAGCTGTGTGCATCCAGGTCATGCAGAGTAAAAATA...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp AATACAGAGTGGCATGCCCCCAGTTTAGTGTGTCAGTTAACCATATATGTCCTTAAGAAAAGACTTTACTaGCCAGCCAATCTTGCCCTA +
Preference number: 2 (lower is better)
Translates to: NTEWHAPSLVCQLTIYVLKKRLY*PANLAL
Trigger: TAGGGCAAGATTGGCTGGCCAGTAAAGTCTTTTCTT...AAGGACATATATGGTTAACTGACACACTAAACTGGGGGCATGCCACTCTGTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 90 bp ACAGAAGTCAAGCCTACAGGTCATGTGCTGGGAACAGCATGGAATTaGATTTGTCAAAGTGTGGTTATTTGCACAGTCTCACTTAAAACA +
Preference number: 2 (lower is better)
Translates to: TEVKPTGHVLGTAWN*ICQSVVICTVSLKT
Trigger: TGTTTTAAGTGAGACTGTGCAAATAACCACACTTTGACAAATCAAATTCCATGCTGTTCCCAGCACATGACCTGTAGGCTTGACTTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp CGAATTGAATGTGTTCAGAGAGGCCTGGTCTTCAAGAAAGTACTTAACTTAACCCCTCTGCCATCATTCTaGATTGTGTTGATTGTGCTA +
Preference number: 2 (lower is better)
Translates to: RIECVQRGLVFKKVLNLTPLPSF*IVLIVL
Trigger: TAGCACAATCAACACAATTCAGAATGATGGCAGAGG...GGTTAAGTTAAGTACTTTCTTGAAGACCAGGCCTCTCTGAACACATTCAATTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp CAGCTGTCCTACACTAACATCATTTCATCCTTATGTCCCATAGCAATATTTACTCTACCAGTTAAACCTTaGGAAGTCCTGCGGGAAAGT +
Preference number: 2 (lower is better)
Translates to: QLSYTNIISSLCPIAIFTLPVKP*EVLRES
Trigger: ACTTTCCCGCAGGACTTCTCAAGGTTTAACTGGTAG...AGTAAATATTGCTATGGGACATAAGGATGAAATGATGTTAGTGTAGGACAGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR GCA 90 bp AGACTGACTGCCTGCTGGACATACGAGATTTTGAAGAGCCCTGGAAATAGACTATATTTATTTTTACTCTaGATGACCTGGATGCACACA +
Preference number: 2 (lower is better)
Translates to: RLTACWTYEILKSPGNRLYLFLL*MTWMHT
Trigger: TGTGTGCATCCAGGTCATGCAGAGTAAAAATAAATA...TAGTCTATTTCCAGGGCTCTTCAAAATCTCGTATGTCCAGCAGGCAGTCAGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR GCA 90 bp CAGCTGTCCTACACTAACATCATTTCATCCTTATGTCCCATAGCAATATTTACTCAGGCTGCTGTCCTCTaGCATCATTCTGAATTGTGT +
Preference number: 2 (lower is better)
Translates to: QLSYTNIISSLCPIAIFTQAAVL*HHSELC
Trigger: ACACAATTCAGAATGATGGCAGAGGACAGCAGCCTG...AGTAAATATTGCTATGGGACATAAGGATGAAATGATGTTAGTGTAGGACAGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR GCA 90 bp GTCAAAGTGTGGTTATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTACTTTGTGCTGTTACGTaGAGTATTCTCAATGCCAGA +
Preference number: 2 (lower is better)
Translates to: VKVWLFAQSHLKHSCPTLLCAVT*SILNAR
Trigger: TCTGGCATTGAGAATACTGCACGTAACAGCACAAAG...TAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAATAACCACACTTTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCATTGCAAATGTGAGCTaGGGGACACTCAAACATTCA +
Preference number: 2 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVIANVS*GTLKHS
Trigger: TGAATGTTTGAGTGTCCCCCAGCTCACATTTGCAAT...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CCA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGAAATATAGGTGGAATTTaGCCTCCTGCCCTAAGGATT +
Preference number: 2 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRNIGGI*PPALRI
Trigger: AATCCTTAGGGCAGGAGGCCAAATTCCACCTATATT...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp CAGCTGTCCTACACTAACATCATTTCATCCTTATGTCCCATAGCAATATTTACTATGCTCTTGCCTCTTTaGAAGTCAGGAGTGAGGTTT +
Preference number: 2 (lower is better)
Translates to: QLSYTNIISSLCPIAIFTMLLPL*KSGVRF
Trigger: AAACCTCACTCCTGACTTTCAAAGAGGCAAGAGCAT...AGTAAATATTGCTATGGGACATAAGGATGAAATGATGTTAGTGTAGGACAGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR GCA 90 bp ATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTAACATCATTTCATCCGTGCAGTATTCTCAATaGCAGAACTTGAGAGTGGTA +
Preference number: 2 (lower is better)
Translates to: ICTVSLKTQLSYTNIISSVQYSQ*QNLRVV
Trigger: TACCACTCTCAAGTTCTGGCATTGAGAATACTGCAC...GGATGAAATGATGTTAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp GAATCTATAAGACAGCCTCAATTAAATGTAGTCCTTATAAGAGTTGGGGTGGTCAAAGATTCTCAGCTGTaGAACTCAACTGAAACTCTG +
Preference number: 2 (lower is better)
Translates to: ESIRQPQLNVVLIRVGVVKDSQL*NSTETL
Trigger: CAGAGTTTCAGTTGAGTTTCACAGCTGAGAATCTTT...GACCACCCCAACTCTTATAAGGACTACATTTAATTGAGGCTGTCTTATAGATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR TCA 90 bp GTCAAAGTGTGGTTATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTATCACCTATTGTTGCCTaGAGCTTAAAAGGAACAAAA +
Preference number: 2 (lower is better)
Translates to: VKVWLFAQSHLKHSCPTLSPIVA*SLKGTK
Trigger: TTTTGTTCCTTTTAAGCTTCAGGCAACAATAGGTGA...TAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAATAACCACACTTTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp CCCTCTGTACTTCAAGTCAATCGGGATGTCTTGGATGAAGAATATGTTCATCATCTAGACACTTCCCTGTaGTCACTAATTAAGAAAATG +
Preference number: 2 (lower is better)
Translates to: PSVLQVNRDVLDEEYVHHLDTSL*SLIKKM
Trigger: CATTTTCTTAATTAGTGACCACAGGGAAGTGTCTAG...ATGATGAACATATTCTTCATCCAAGACATCCCGATTGACTTGAAGTACAGAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CCA 90 bp CTGCTCACCATCAGCTTCTTTGTTCTGTCTCTGACTTTTATTTCCTTAATACTAGAGAATTTCTTTGTCTaGATGATCCACCAGGTCCAT +
Preference number: 2 (lower is better)
Translates to: LLTISFFVLSLTFISLILENFFV*MIHQVH
Trigger: ATGGACCTGGTGGATCATCCAGACAAAGAAATTCTC...TAGTATTAAGGAAATAAAAGTCAGAGACAGAACAAAGAAGCTGATGGTGAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR GCA 90 bp CTGCTCACCATCAGCTTCTTTGTTCTGTCTCTGACTTTTATTTCCTTAATACTAGCCTTTGAAAAGCCTTaGAGTGAGAGAATTTCTTTG +
Preference number: 2 (lower is better)
Translates to: LLTISFFVLSLTFISLILAFEKP*SERISL
Trigger: CAAAGAAATTCTCTCACTGCAAGGCTTTTCAAAGGC...TAGTATTAAGGAAATAAAAGTCAGAGACAGAACAAAGAAGCTGATGGTGAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR TCA 90 bp CAGCTGTCCTACACTAACATCATTTCATCCTTATGTCCCATAGCAATATTTACTTGTGTTACTATAGCATaGATCTGCTCATCAAAGAAG +
Preference number: 2 (lower is better)
Translates to: QLSYTNIISSLCPIAIFTCVTIA*ICSSKK
Trigger: CTTCTTTGATGAGCAGATTCATGCTATAGTAACACA...AGTAAATATTGCTATGGGACATAAGGATGAAATGATGTTAGTGTAGGACAGCTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CCA 72 bp GAGCACCGCCCACAAGTGCTCACTCAGCTCCCTGAGTaGCTAACCACACCCCCGGGAGCACCGCTCAGCACA +
Preference number: 3 (lower is better)
Translates to: EHRPQVLTQLPE*LTTPPGAPLST
Trigger: TGTGCTGAGCGGTGCTCCCGGGGGTGTGGTTAGCCACTCAGGGAGCTGAGTGAGCACTTGTGGGCGGTGCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp GCCCCCAAGTGCTCACTCAGCTTCCTGACCACACCCTaGGGAGCACCGCCCACAAGTGCTCACTCAGCTCCC +
Preference number: 3 (lower is better)
Translates to: APKCSLSFLTTP*GAPPTSAHSAP
Trigger: GGGAGCTGAGTGAGCACTTGTGGGCGGTGCTCCCCAGGGTGTGGTCAGGAAGCTGAGTGAGCACTTGGGGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp CTTCCTGACCACACCCCCGGGAGCACCACTCCCAAGTaGTCACTCAGCTTCCTGACCACACCCCCTGGAGCA +
Preference number: 3 (lower is better)
Translates to: LPDHTPGSTTPK*SLSFLTTPPGA
Trigger: TGCTCCAGGGGGTGTGGTCAGGAAGCTGAGTGAGCACTTGGGAGTGGTGCTCCCGGGGGTGTGGTCAGGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp TCCCAAGTGCTCACTCAGCTTCCTGACCACACCCCCTaGAGCACCGCCCCCAAGTGCTCACTCAGCTTCCTG +
Preference number: 3 (lower is better)
Translates to: SQVLTQLPDHTP*STAPKCSLSFL
Trigger: CAGGAAGCTGAGTGAGCACTTGGGGGCGGTGCTCCAGGGGGTGTGGTCAGGAAGCTGAGTGAGCACTTGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp CCCCAGAACGCTAGCCGCCCCGTCAGGCCAGGCATGTaGGTCCTGTGCTCAATCAGGAAGAAGACAACGCAA +
Preference number: 3 (lower is better)
Translates to: PQNASRPVRPGM*VLCSIRKKTTQ
Trigger: TTGCGTTGTCTTCTTCCTGATTGAGCACAGGACCCACATGCCTGGCCTGACGGGGCGGCTAGCGTTCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp GCTAGCCGCCCCGTCAGGCCAGGCATGTGGGTCCTGTaGTCAATCAGGAAGAAGACAACGCAAAGCATCTCC +
Preference number: 3 (lower is better)
Translates to: ASRPVRPGMWVL*SIRKKTTQSIS
Trigger: GGAGATGCTTTGCGTTGTCTTCTTCCTGATTGAGCACAGGACCCACATGCCTGGCCTGACGGGGCGGCTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp TCCATCCTGGGAACTGGAGATGAGGAACAGGCACTGTaGCCTGTGGAGATGGTCTGTCCACATGTCCCCAGC +
Preference number: 3 (lower is better)
Translates to: SILGTGDEEQAL*PVEMVCPHVPS
Trigger: GCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTTCCTCATCTCCAGTTCCCAGGATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp CTGCAGGGCAGAAAGAATGCCAAGACAAACAGCCAGTaGCAAGCACCTGTGGCAGAATGGCAGCCATGGGGT +
Preference number: 3 (lower is better)
Translates to: LQGRKNAKTNSQ*QAPVAEWQPWG
Trigger: ACCCCATGGCTGCCATTCTGCCACAGGTGCTTGGCACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp GGAATTCAAACAAGACAGGAGCCTAGGGGCAGGAGCTaGTGCAGGGGCCATGGAAAGTTGCAGCTTACTGGC +
Preference number: 3 (lower is better)
Translates to: GIQTRQEPRGRS*CRGHGKLQLTG
Trigger: GCCAGTAAGCTGCAACTTTCCATGGCCCCTGCATCAGCTCCTGCCCCTAGGCTCCTGTCTTGTTTGAATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CCA 72 bp GGAGGTGTGGCCTTGTTGGAGTTAGTCTGTCCTTGTTaGAGGAAGTGTGACAGTGTGGGGGATCCTCCTCCT +
Preference number: 3 (lower is better)
Translates to: GGVALLELVCPC*RKCDSVGDPPP
Trigger: AGGAGGAGGATCCCCCACACTGTCACACTTCCTCCAACAAGGACAGACTAACTCCAACAAGGCCACACCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp TGGGAACTGGAGATGAGGAACAGGCACTGTGACCTGTaGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGT +
Preference number: 3 (lower is better)
Translates to: WELEMRNRHCDL*RWSVHMSPAVG
Trigger: ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTTCCTCATCTCCAGTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp AACAGGCACTGTGACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGTGGAGGTGTGGCCTTGTaGGAGTTAGTCTGTCCTTGT +
Preference number: 3 (lower is better)
Translates to: NRHCDLWRWSVHMSPAVGGGVAL*ELVCPC
Trigger: ACAAGGACAGACTAACTCCAACAAGGCCACACCTCC...ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp AGAATGCCAAGACAAACAGCCAGTGCCAAGCACCTGTaGCAGAATGGCAGCCATGGGGTCATCCACTCTAAC +
Preference number: 3 (lower is better)
Translates to: RMPRQTASAKHL*QNGSHGVIHSN
Trigger: GTTAGAGTGGATGACCCCATGGCTGCCATTCTGCCACAGGTGCTTGGCACTGGCTGTTTGTCTTGGCATTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp CTGGAGATGAGGAACAGGCACTGTGACCTGTGGAGATaGTCTGTCCACATGTCCCCAGCAGTTGGTTCCTTT +
Preference number: 3 (lower is better)
Translates to: LEMRNRHCDLWR*SVHMSPAVGSF
Trigger: AAAGGAACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTTCCTCATCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp TCGGCTGACATCATTCTGCCAATCGGTCCAAGTCCCTaGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGT +
Preference number: 3 (lower is better)
Translates to: SADIILPIGPSP*KEQEAARETPG
Trigger: ACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGATTGGCAGAATGATGTCAGCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp ATGACAGCTTGCATCCAGTTCCTAGGCCCCACGCAGTaGAAGGAGAGAACTGACTCCCTTCAGTCATGCACA +
Preference number: 3 (lower is better)
Translates to: MTACIQFLGPTQ*KERTDSLQSCT
Trigger: TGTGCATGACTGAAGGGAGTCAGTTCTCTCCTTCCACTGCGTGGGGCCTAGGAACTGGATGCAAGCTGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp CAAACGCCACACAGCCAGGCCTCCACCAAATCAGCATaGGACACCAACAGAGACACCAGGAGAAGTTCTTTG +
Preference number: 3 (lower is better)
Translates to: QTPHSQASTKSA*DTNRDTRRSSL
Trigger: CAAAGAACTTCTCCTGGTGTCTCTGTTGGTGTCTCATGCTGATTTGGTGGAGGCCTGGCTGTGTGGCGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp TGCCTCAGCACATGTGTTGCCTCAGTGGGTGAGTCTTaGCTAGAAAAACTCCACAAGAGCCTGTATCGGCTG +
Preference number: 3 (lower is better)
Translates to: CLSTCVASVGES*LEKLHKSLYRL
Trigger: CAGCCGATACAGGCTCTTGTGGAGTTTTTCTAGGCAAGACTCACCCACTGAGGCAACACATGTGCTGAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp TATTCCTCAGTCAGCAAGCCTGAGGAGGACTCACACTaGGTCAGAGACTACCGTCTGGCCATCTTCTTGCAT +
Preference number: 3 (lower is better)
Translates to: YSSVSKPEEDSH*VRDYRLAIFLH
Trigger: ATGCAAGAAGATGGCCAGACGGTAGTCTCTGACCCAGTGTGAGTCCTCCTCAGGCTTGCTGACTGAGGAATA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp CCCAATCAATCCATGGGACTGTTCAAATGGGTGGAGGGAACACCAGAGCATCACCGGGAGATTCATCCATaGCTCCACTCAAAGCTCAAC +
Preference number: 3 (lower is better)
Translates to: PNQSMGLFKWVEGTPEHHREIHP*LHSKLN
Trigger: GTTGAGCTTTGAGTGGAGCAATGGATGAATCTCCCG...GTGATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp AAACTAGAGTATGTATGCCCTGCAGGGCAGAAAGAATaGCAAGACAAACAGCCAGTGCCAAGCACCTGTGGC +
Preference number: 3 (lower is better)
Translates to: KLEYVCPAGQKE*QDKQPVPSTCG
Trigger: GCCACAGGTGCTTGGCACTGGCTGTTTGTCTTGGCATTCTTTCTGCCCTGCAGGGCATACATACTCTAGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp GCCAATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTaGCAGAGAAACACCAGGTTTTTGGTGCATTTCGTT +
Preference number: 3 (lower is better)
Translates to: ANRSKSLEGARS*QRNTRFLVHFV
Trigger: AACGAAATGCACCAAAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGATTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp GAGCTGATGCAGGGGCCATGGAAAGTTGCAGCTTACTaGCTTAATTGCTCTGGCTTGCTCAGCCTGCTTTTT +
Preference number: 3 (lower is better)
Translates to: ELMQGPWKVAAY*LNCSGLLSLLF
Trigger: AAAAAGCAGGCTGAGCAAGCCAGAGCAATTAAGCCAGTAAGCTGCAACTTTCCATGGCCCCTGCATCAGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp ATGGTTAAGAAATCTCTCCATCCTGGGAACTGGAGATaGGGAACAGGCACTGTGACCTGTGGAGATGGTCTG +
Preference number: 3 (lower is better)
Translates to: MVKKSLHPGNWR*GTGTVTCGDGL
Trigger: CAGACCATCTCCACAGGTCACAGTGCCTGTTCCTCATCTCCAGTTCCCAGGATGGAGAGATTTCTTAACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp CAGGTTTTGCCTCAGCACATGTGTTGCCTCAGTGGGTaGGTCTTGCCTAGAAAAACTCCACAAGAGCCTGTA +
Preference number: 3 (lower is better)
Translates to: QVLPQHMCCLSG*VLPRKTPQEPV
Trigger: TACAGGCTCTTGTGGAGTTTTTCTAGGCAAGACTCACCCACTGAGGCAACACATGTGCTGAGGCAAAACCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp TCTTGGAAAATGAGGAGCAGGCCAGTGATAGGTCACTaGGTTACTGTATCTGCCTCCTGGATGACAGCTTGC +
Preference number: 3 (lower is better)
Translates to: SWKMRSRPVIGH*VTVSASWMTAC
Trigger: GCAAGCTGTCATCCAGGAGGCAGATACAGTAACTCAGTGACCTATCACTGGCCTGCTCCTCATTTTCCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp CTCGGGCATCACTGTCCAGTGATGTCTAAATCCTGTTaGTTTACTCCTGTATCACTGCTTCACAGGCAGGGT +
Preference number: 3 (lower is better)
Translates to: LGHHCPVMSKSC*FTPVSLLHRQG
Trigger: ACCCTGCCTGTGAAGCAGTGATACAGGAGTAAAGCAACAGGATTTAGACATCACTGGACAGTGATGCCCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp ATATCCCTCCAAACATCACAAGTCCTCCACAGGTTTTaGCTCAGCACATGTGTTGCCTCAGTGGGTGAGTCT +
Preference number: 3 (lower is better)
Translates to: ISLQTSQVLHRF*LSTCVASVGES
Trigger: AGACTCACCCACTGAGGCAACACATGTGCTGAGGCAAAACCTGTGGAGGACTTGTGATGTTTGGAGGGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp CTCTTCCCAATCAATCCATGGGACTGTTCAAATGGGTaGAGGGAACACCAGAGCATCACACAGCATGGGATT +
Preference number: 3 (lower is better)
Translates to: LFPINPWDCSNG*REHQSITQHGI
Trigger: AATCCCATGCTGTGTGATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp CTGAGGAGGACTCACACTGGGTCAGAGACTACCGTCTaGCCATCTTCTTGCATGGAGAAAGCTTATGAACAA +
Preference number: 3 (lower is better)
Translates to: LRRTHTGSETTV*PSSCMEKAYEQ
Trigger: TTGTTCATAAGCTTTCTCCATGCAAGAAGATGGCCAGACGGTAGTCTCTGACCCAGTGTGAGTCCTCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp ACATGGCTCTCCCTTCTCTCGGGCATCACTGTCCAGTaGTGTCTAAATCCTGTTGCTTTACTCCTGTATCAC +
Preference number: 3 (lower is better)
Translates to: TWLSLLSGITVQ*CLNPVALLLYH
Trigger: GTGATACAGGAGTAAAGCAACAGGATTTAGACATCACTGGACAGTGATGCCCGAGAGAAGGGAGAGCCATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp TGGTCCATGTGTCCTTCTCCCCAAACGGTAAAGATCTaGGGCTCTAGATCTGCTCACCATCAGCTTCTTTGT +
Preference number: 3 (lower is better)
Translates to: WSMCPSPQTVKI*GSRSAHHQLLC
Trigger: ACAAAGAAGCTGATGGTGAGCAGATCTAGAGCCTCAGATCTTTACCGTTTGGGGAGAAGGACACATGGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp GTTCAAATTCCATCACTATTCCCACCCCAGAGGTCCTaGTCTTGTGACCCAAGCACATCCTTAAAGGACCAA +
Preference number: 3 (lower is better)
Translates to: VQIPSLFPPQRS*SCDPSTSLKDQ
Trigger: TTGGTCCTTTAAGGATGTGCTTGGGTCACAAGAGCAGGACCTCTGGGGTGGGAATAGTGATGGAATTTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp CATGAGACACCAACAGAGACACCAGGAGAAGTTCTTTaGTGTGTCTCTCTCAACCACGTGAAGATCAGCGAA +
Preference number: 3 (lower is better)
Translates to: HETPTETPGEVL*CVSLNHVKISE
Trigger: TTCGCTGATCTTCACGTGGTTGAGAGAGACACAGCAAAGAACTTCTCCTGGTGTCTCTGTTGGTGTCTCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp AGAAATGTTTTGTCTGGTTCCCCTAACTCACTTATCTaGCCCATCCACAGCAGGCTAGGACTCCCATTGCTA +
Preference number: 3 (lower is better)
Translates to: RNVLSGSPNSLI*PIHSRLGLPLL
Trigger: TAGCAATGGGAGTCCTAGCCTGCTGTGGATGGGCCAGATAAGTGAGTTAGGGGAACCAGACAAAACATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTGTCTCTTCTTGTTCTTaGTCTGTTTGCAGTCAGATC +
Preference number: 3 (lower is better)
Translates to: IGPSPWKEQEAARETPGFVSSCS*SVCSQI
Trigger: GATCTGACTGCAAACAGACAAAGAACAAGAAGAGAC...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp ACCAGGAGAAGTTCTTTGCTGTGTCTCTCTCAACCACGTGAAGATCAGCGAAGAAATGTGTTAGGACCATaGGATGCTCTGAGGTTTGCT +
Preference number: 3 (lower is better)
Translates to: TRRSSLLCLSQPREDQRRNVLGP*DALRFA
Trigger: AGCAAACCTCAGAGCATCCAATGGTCCTAACACATT...TCTTCGCTGATCTTCACGTGGTTGAGAGAGACACAGCAAAGAACTTCTCCTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp CATCAGTCAGTCAGTCGATGTGCATTGAGGACGTATTaGCAGACTGACTGCCTGCTGGACATACGAGATTTT +
Preference number: 3 (lower is better)
Translates to: HQSVSRCALRTY*QTDCLLDIRDF
Trigger: AAAATCTCGTATGTCCAGCAGGCAGTCAGTCTGTCAATACGTCCTCAATGCACATCGACTGACTGACTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp GTCACAACAAGCAGAGCTCAGCAACGCAATGTAAGGTaGACTAACACATGTGGCATTAGCAGAGAGCATCCT +
Preference number: 3 (lower is better)
Translates to: VTTSRAQQRNVR*TNTCGISREHP
Trigger: AGGATGCTCTCTGCTAATGCCACATGTGTTAGTTCACCTTACATTGCGTTGCTGAGCTCTGCTTGTTGTGAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp TTGGTGATGCTTCCAAAACATGAATCGTGGAGGAAGTaGGGACCATCCTCAGTGCATGTAAAAGATTGGGGG +
Preference number: 3 (lower is better)
Translates to: LVMLPKHESWRK*GPSSVHVKDWG
Trigger: CCCCCAATCTTTTACATGCACTGAGGATGGTCCTCACTTCCTCCACGATTCATGTTTTGGAAGCATCACCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp ACTCCCATTGCTAGGAGACTTGATATGATCCTGCTATaGGCTCTTTCTCGGTTCTTTCTGATTTCCCCAGTC +
Preference number: 3 (lower is better)
Translates to: TPIARRLDMILL*ALSRFFLISPV
Trigger: GACTGGGGAAATCAGAAAGAACCGAGAAAGAGCGCATAGCAGGATCATATCAAGTCTCCTAGCAATGGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp AGAATTGAGACCAAGGAAGCGTTGCCAAGCTATCTATaGAAGCAAGCAAGCCTCTGTTCACAGTTCACTGAG +
Preference number: 3 (lower is better)
Translates to: RIETKEALPSYL*KQASLCSQFTE
Trigger: CTCAGTGAACTGTGAACAGAGGCTTGCTTGCTTGCATAGATAGCTTGGCAACGCTTCCTTGGTCTCAATTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp AGGCTGGAAAATGTTAGCCAGAAACTAGAGTATGTATaGCCTGCAGGGCAGAAAGAATGCCAAGACAAACAG +
Preference number: 3 (lower is better)
Translates to: RLENVSQKLEYV*PAGQKECQDKQ
Trigger: CTGTTTGTCTTGGCATTCTTTCTGCCCTGCAGGGCATACATACTCTAGTTTCTGGCTAACATTTTCCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp CTGGGTCAGAGACTACCGTCTGGCCATCTTCTTGCATaGAGAAAGCTTATGAACAAACTCCTTCAAGTTCAA +
Preference number: 3 (lower is better)
Translates to: LGQRLPSGHLLA*RKLMNKLLQVQ
Trigger: TTGAACTTGAAGGAGTTTGTTCATAAGCTTTCTCCATGCAAGAAGATGGCCAGACGGTAGTCTCTGACCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp GATGACATCACCCACAGTGGACTAGACACTTCCCTGTaGTCACTAATTAAGAAAATGTCTTACAGGCTTGCC +
Preference number: 3 (lower is better)
Translates to: DDITHSGLDTSL*SLIKKMSYRLA
Trigger: GGCAAGCCTGTAAGACATTTTCTTAATTAGTGACCACAGGGAAGTGTCTAGTCCACTGTGGGTGATGTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp TACAAATGTCAAGAACGTATTCCTCAGTCAGCAAGCCTGAGGAGGACTCACACTTGGACATACGAGATTTaGAAGAGCCCTGGAAATAGA +
Preference number: 3 (lower is better)
Translates to: YKCQERIPQSASLRRTHTWTYEI*KSPGNR
Trigger: TCTATTTCCAGGGCTCTTCAAAATCTCGTATGTCCA...AGTGTGAGTCCTCCTCAGGCTTGCTGACTGAGGAATACGTTCTTGACATTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp GTGGTGTGTTTGACTCACGCAGACCCAGTCTTTAGAACATTGTCCTTAGAACCTGAATTTCACCTAATGTaGACCTCTGATCACCATGAG +
Preference number: 3 (lower is better)
Translates to: VVCLTHADPVFRTLSLEPEFHLM*TSDHHE
Trigger: CTCATGGTGATCAGAGGTCAACATTAGGTGAAATTC...AGGTTCTAAGGACAATGTTCTAAAGACTGGGTCTGCGTGAGTCAAACACACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp TTAAAGGACCAACTGCCTAAACCCATTTTGGTGGTTTaGATAAGCTTGGACCAGGGAGGGACACTATTAGGA +
Preference number: 3 (lower is better)
Translates to: LKDQLPKPILVV*ISLDQGGTLLG
Trigger: TCCTAATAGTGTCCCTCCCTGGTCCAAGCTTATTCAAACCACCAAAATGGGTTTAGGCAGTTGGTCCTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp CAGGCTGCTGTCCTCTGCCATCATTCTGAATTGTGTTaGTTGTGCTATGCTCTGTCTGTATGTAACAGGAAA +
Preference number: 3 (lower is better)
Translates to: QAAVLCHHSELC*LCYALSVCNRK
Trigger: TTTCCTGTTACATACAGACAGAGCATAGCACAATCAACACAATTCAGAATGATGGCAGAGGACAGCAGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp CCAGAGCATCACACAGCATGGGATTTGTCATTTCACTaGTGTGATATGGCACGAGTGACACCTAATTTTATC +
Preference number: 3 (lower is better)
Translates to: PEHHTAWDLSFH*CDMARVTPNFI
Trigger: GATAAAATTAGGTGTCACTCGTGCCATATCACAGCAGTGAAATGACAAATCCCATGCTGTGTGATGCTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp TCTTCTTGTTCTTTGTCTGTTTGCAGTCAGATCTCTTaGTGTGCTCCACTTAGACACCTCGTTTCTTCTGCA +
Preference number: 3 (lower is better)
Translates to: SSCSLSVCSQIS*CAPLRHLVSSA
Trigger: TGCAGAAGAAACGAGGTGTCTAAGTGGAGCACAGCAAGAGATCTGACTGCAAACAGACAAAGAACAAGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp CCAGTTGCTGTCGGTTTAATGTCTAGCATTTCAGCTTaGGTAATTTTTAAGGACATCGTCTCCTTAGCCCAG +
Preference number: 3 (lower is better)
Translates to: PVAVGLMSSISA*VIFKDIVSLAQ
Trigger: CTGGGCTAAGGAGACGATGTCCTTAAAAATTACCCAAGCTGAAATGCTAGACATTAAACCGACAGCAACTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGAACCCATTTTGGTGGTTaGAATAAGCTTGGACCAGGG +
Preference number: 3 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRTHFGG*NKLGPG
Trigger: CCCTGGTCCAAGCTTATTCAAACCACCAAAATGGGT...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp GACATCGTCTCCTTAGCCCAGATATACATTGTTCTTCTTTCTCTAACATGCAGACAATATAGGTGGAATTaGGCCTCCTGCCCTAAGGAT +
Preference number: 3 (lower is better)
Translates to: DIVSLAQIYIVLLSLTCRQYRWN*ASCPKD
Trigger: ATCCTTAGGGCAGGAGGCCAAATTCCACCTATATTG...TCTGCATGTTAGAGAAAGAAGAACAATGTATATCTGGGCTAAGGAGACGATGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp ATAGACATAGCAAGGGCAGTCTTTAAGGTATTTCAGAGTAAAGGCTTCTTAGACATCCACCAGGTCCATTaGATAGCCAGTAATCCCAGC +
Preference number: 3 (lower is better)
Translates to: IDIARAVFKVFQSKGFLDIHQVH*IASNPS
Trigger: GCTGGGATTACTGGCTATCAAATGGACCTGGTGGAT...GTCTAAGAAGCCTTTACTCTGAAATACCTTAAAGACTGCCCTTGCTATGTCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp GGACACTGCCATGTTCCCGCCTTGATGATAATGGACTaGACCTCTGAATCTATAAGACAGCCTCAATTAAAT +
Preference number: 3 (lower is better)
Translates to: GHCHVPALMIMD*TSESIRQPQLN
Trigger: ATTTAATTGAGGCTGTCTTATAGATTCAGAGGTTCAGTCCATTATCATCAAGGCGGGAACATGGCAGTGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp GTAATTCTAGGGCTTCAGAGGCCAAAGCAAGATGAATaGAGGTCAGCCAGAGGTATAAAACAAACTCATGTG +
Preference number: 3 (lower is better)
Translates to: VILGLQRPKQDE*RSARGIKQTHV
Trigger: CACATGAGTTTGTTTTATACCTCTGGCTGACCTTCATTCATCTTGCTTTGGCCTCTGAAGCCCTAGAATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp TCTATGCAAGCAAGCAAGCCTCTGTTCACAGTTCACTaGGTCCTATTTATATCCCTCCAAACATCACAAGTC +
Preference number: 3 (lower is better)
Translates to: SMQASKPLFTVH*VLFISLQTSQV
Trigger: GACTTGTGATGTTTGGAGGGATATAAATAGGACTCAGTGAACTGTGAACAGAGGCTTGCTTGCTTGCATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp GACTTATTCTCGGAAGTCAGATTTAGGGTCCGCCTCTaGCAATTACACTGTGTGACTGAAAAGGTCATTTTT +
Preference number: 3 (lower is better)
Translates to: DLFSEVRFRVRL*QLHCVTEKVIF
Trigger: AAAAATGACCTTTTCAGTCACACAGTGTAATTGGCAGAGGCGGACCCTAAATCTGACTTCCGAGAATAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CCA 72 bp ACCAGAGTCAGCACTATGCATGTGGACTTCCCGGTCTaGAAAACTGTAAGTCAAATTAGGTCTTTTGTGATT +
Preference number: 3 (lower is better)
Translates to: TRVSTMHVDFPV*KTVSQIRSFVI
Trigger: AATCACAAAAGACCTAATTTGACTTACAGTTTTCCAGACCGGGAAGTCCACATGCATAGTGCTGACTCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp TCTAACTGTAGGTGCTTCATAGGCAGAATTGGTAGCTaGGGCTATAATTTCTACATCACTGGTAATCCTGGT +
Preference number: 3 (lower is better)
Translates to: SNCRCFIGRIGS*GYNFYITGNPG
Trigger: ACCAGGATTACCAGTGATGTAGAAATTATAGCCCCAGCTACCAATTCTGCCTATGAAGCACCTACAGTTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp GGGTCTCCTATAATGCTACGGGCCCCTTTCCATCTCTaGCTATCCCTTAACTGTTACTTAAAAGACAATAAT +
Preference number: 3 (lower is better)
Translates to: GSPIMLRAPFHL*LSLNCYLKDNN
Trigger: ATTATTGTCTTTTAAGTAACAGTTAAGGGATAGTCAGAGATGGAAAGGGGCCCGTAGCATTATAGGAGACCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp CCATGTTCCCGCCTTGATGATAATGGACTGAACCTCTaGATCTATAAGACAGCCTCAATTAAATGTAGTCCT +
Preference number: 3 (lower is better)
Translates to: PCSRLDDNGLNL*IYKTASIKCSP
Trigger: AGGACTACATTTAATTGAGGCTGTCTTATAGATTCAGAGGTTCAGTCCATTATCATCAAGGCGGGAACATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR TCA 72 bp GCCCTCTGTACTTCAAGTCAATCGGGATGTCTTGGATaGAGAATATGTTCATCATTGAAGGGAGTCAATACA +
Preference number: 3 (lower is better)
Translates to: ALCTSSQSGCLG*RICSSLKGVNT
Trigger: TGTATTGACTCCCTTCAATGATGAACATATTCTTCATCCAAGACATCCCGATTGACTTGAAGTACAGAGGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp TTCTCAATGCCAGAACTTGAGAGTGGTAATACGAATTaGATGTGTTCAGAGAGGCCTGGTCTTCAAGAAAGT +
Preference number: 3 (lower is better)
Translates to: FSMPELESGNTN*MCSERPGLQES
Trigger: ACTTTCTTGAAGACCAGGCCTCTCTGAACACATTCAATTCGTATTACCACTCTCAAGTTCTGGCATTGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp AACAAGTCTGTTCTAGCCATGTATTTATTTTTACTCTaGATGACCTGGATGCACACAGCTGCCTCGTATTTG +
Preference number: 3 (lower is better)
Translates to: NKSVLAMYLFLL*MTWMHTAASYL
Trigger: CAAATACGAGGCAGCTGTGTGCATCCAGGTCATGCAGAGTAAAAATAAATACATGGCTAGAACAGACTTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR GCA 72 bp AACTCTTTAATCTACCAGTTAAACCTTGAGAAGTCCTaGGGGAAAGTAGCTTTCAGACATTGCACCAGACTA +
Preference number: 3 (lower is better)
Translates to: NSLIYQLNLEKS*GKVAFRHCTRL
Trigger: TAGTCTGGTGCAATGTCTGAAAGCTACTTTCCCGCAGGACTTCTCAAGGTTTAACTGGTAGATTAAAGAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CCA 72 bp GTTCTAGCCATGTATTTATTTTTACTCTGCATGACCTaGATGCACACAGCTGCCTCGTATTTGCATAGACAT +
Preference number: 3 (lower is better)
Translates to: VLAMYLFLLCMT*MHTAASYLHRH
Trigger: ATGTCTATGCAAATACGAGGCAGCTGTGTGCATCCAGGTCATGCAGAGTAAAAATAAATACATGGCTAGAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CCA 72 bp GATAGAACTAGAATAGTTTTCAATATAGGTGGAATTTaGCCTCCTGCCCTAAGGATTCAACCAGATTCTGCC +
Preference number: 3 (lower is better)
Translates to: DRTRIVFNIGGI*PPALRIQPDSA
Trigger: GGCAGAATCTGGTTGAATCCTTAGGGCAGGAGGCCAAATTCCACCTATATTGAAAACTATTCTAGTTCTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR-3UTR CAA 90 bp CTGCTCACCATCAGCTTCTTTGTTCTGTCTCTGACTTTTATTTCCTTAATACTAAGGGGCCATGGAAAGTaGCAGCTTACTGGCTTAATT +
Preference number: 3 (lower is better)
Translates to: LLTISFFVLSLTFISLILRGHGK*QLTGLI
Trigger: AATTAAGCCAGTAAGCTGCAACTTTCCATGGCCCCT...TAGTATTAAGGAAATAAAAGTCAGAGACAGAACAAAGAAGCTGATGGTGAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp ATAGACATAGCAAGGGCAGTCTTTAAGGTATTTCAGAGTAAAGGCTTCTTAGACCCAGTCTTTAGAACATaGTCCTTAGAACCTGGAGCA +
Preference number: 3 (lower is better)
Translates to: IDIARAVFKVFQSKGFLDPVFRT*SLEPGA
Trigger: TGCTCCAGGTTCTAAGGACAATGTTCTAAAGACTGG...GTCTAAGAAGCCTTTACTCTGAAATACCTTAAAGACTGCCCTTGCTATGTCTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp AGGTGCTTCATAGGCAGAATTGGTAGCTGGGGCTATAATTTCTACATCACTGGTTGTCTTAACCCAGTGTaGATGATACAAAGTATATCC +
Preference number: 3 (lower is better)
Translates to: RCFIGRIGSWGYNFYITGCLNPV*MIQSIS
Trigger: GGATATACTTTGTATCATCAACACTGGGTTAAGACA...ACCAGTGATGTAGAAATTATAGCCCCAGCTACCAATTCTGCCTATGAAGCACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp ATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTAACATCATTTCATCCGCAAGTGTTAGTGTGTaGGTGATGCTTCCAAAACAT +
Preference number: 3 (lower is better)
Translates to: ICTVSLKTQLSYTNIISSASVSV*VMLPKH
Trigger: ATGTTTTGGAAGCATCACCAACACACTAACACTTGC...GGATGAAATGATGTTAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp GTTCAGAACAGAAACAGAGCATCACCTATTGTTGCCTaGAGCTTAAAAGGAACAAAAAGTGTAGTAGGCTCT +
Preference number: 3 (lower is better)
Translates to: VQNRNRASPIVA*SLKGTKSVVGS
Trigger: AGAGCCTACTACACTTTTTGTTCCTTTTAAGCTTCAGGCAACAATAGGTGATGCTCTGTTTCTGTTCTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp GATTGGGGGTTACTCCGATTGGTTCAGAGAGCTGAATaGAGCCTCATAAGTAGAAATTTTAAGATGACAAAC +
Preference number: 3 (lower is better)
Translates to: DWGLLRLVQRAE*SLISRNFKMTN
Trigger: GTTTGTCATCTTAAAATTTCTACTTATGAGGCTTCATTCAGCTCTCTGAACCAATCGGAGTAACCCCCAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp TTCCGTTCAGAACAGAAACAGAGCATCACCTATTGTTaGCTGAAGCTTAAAAGGAACAAAAAGTGTAGTAGG +
Preference number: 3 (lower is better)
Translates to: FRSEQKQSITYC*LKLKRNKKCSR
Trigger: CCTACTACACTTTTTGTTCCTTTTAAGCTTCAGGCAACAATAGGTGATGCTCTGTTTCTGTTCTGAACGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp ATTTGCACAGTCTCACTTAAAACACAGCTGTCCTACACTAACATCATTTCATCCTCTCAATGCCAGAACTaGAGAGTGGTAATACGAATT +
Preference number: 3 (lower is better)
Translates to: ICTVSLKTQLSYTNIISSSQCQN*RVVIRI
Trigger: AATTCGTATTACCACTCTCAAGTTCTGGCATTGAGA...GGATGAAATGATGTTAGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp CAGCTGTCCTACACTAACATCATTTCATCCTTATGTCCCATAGCAATATTTACTGCTATAGATGGGATTTaGAAGTATGGGTCACAAAGG +
Preference number: 3 (lower is better)
Translates to: QLSYTNIISSLCPIAIFTAIDGI*KYGSQR
Trigger: CCTTTGTGACCCATACTTCAAAATCCCATCTATAGC...AGTAAATATTGCTATGGGACATAAGGATGAAATGATGTTAGTGTAGGACAGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp AATCGGGATGTCTTGGATGAAGAATATGTTCATCATTaGAGGGAGTCAATACAGGAATTCAAACAAGACAGG +
Preference number: 3 (lower is better)
Translates to: NRDVLDEEYVHH*RESIQEFKQDR
Trigger: CCTGTCTTGTTTGAATTCCTGTATTGACTCCCTTCAATGATGAACATATTCTTCATCCAAGACATCCCGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp AGACACAGCTCTAAACACAAGCATTTGCATATAGGTTaGTGGAGTGTCATAAAGAAAGTTAACACGAGTCTA +
Preference number: 3 (lower is better)
Translates to: RHSSKHKHLHIG*WSVIKKVNTSL
Trigger: TAGACTCGTGTTAACTTTCTTTATGACACTCCAGCAACCTATATGCAAATGCTTGTGTTTAGAGCTGTGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR GCA 72 bp ACAGCATGGAATTTGATTTGTCAAAGTGTGGTTATTTaGACAGTCTCACTTAAAACACAGCTGTCCTACACT +
Preference number: 3 (lower is better)
Translates to: TAWNLICQSVVI*TVSLKTQLSYT
Trigger: AGTGTAGGACAGCTGTGTTTTAAGTGAGACTGTGCAAATAACCACACTTTGACAAATCAAATTCCATGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CCA 72 bp CACAGCTCTAAACACAAGCATTTGCATATAGGTTGCTaGAGTGTCATAAAGAAAGTTAACACGAGTCTAGAT +
Preference number: 3 (lower is better)
Translates to: HSSKHKHLHIGC*SVIKKVNTSLD
Trigger: ATCTAGACTCGTGTTAACTTTCTTTATGACACTCCAGCAACCTATATGCAAATGCTTGTGTTTAGAGCTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp TCCAACTTACCTTTTCATGATTTACACAGCTTTGTCATTATAAACCTCTCTGACGCTCAAATGTGTCTTTaGTGTTCTTCTGTCCTTTGT +
Preference number: 3 (lower is better)
Translates to: SNLPFHDLHSFVIINLSDAQMCL*CSSVLC
Trigger: ACAAAGGACAGAAGAACACAAAAGACACATTTGAGC...GTCAGAGAGGTTTATAATGACAAAGCTGTGTAAATCATGAAAAGGTAAGTTGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR-3UTR CAA 90 bp TCCAACTTACCTTTTCATGATTTACACAGCTTTGTCATTATAAACCTCTCTGACTATCTACAAAATTGTTaGCCTCACACACTGTATAGC +
Preference number: 3 (lower is better)
Translates to: SNLPFHDLHSFVIINLSDYLQNC*PHTLYS
Trigger: GCTATACAGTGTGTGAGGCAAACAATTTTGTAGATA...GTCAGAGAGGTTTATAATGACAAAGCTGTGTAAATCATGAAAAGGTAAGTTGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR TCA 72 bp GAAGAAGACAACGCAAAGCATCTCCTAACTTACTCTTaGGGCTTGATATTTTTAAATGGCTACACTTTGTTT +
Preference number: 3 (lower is better)
Translates to: EEDNAKHLLTYS*GLIFLNGYTLF
Trigger: AAACAAAGTGTAGCCATTTAAAAATATCAAGCCTCAAGAGTAAGTTAGGAGATGCTTTGCGTTGTCTTCTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR TCA 90 bp TCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCCATGTTCCCGCCTTGATGAGGGTGCCATCCACCTaGGTGAGCTGCTTCTCAAAC +
Preference number: 4 (lower is better)
Translates to: SAPPELCLPGHCHVPALMRVPST*VSCFSN
Trigger: GTTTGAGAAGCAGCTCACTCAGGTGGATGGCACCCT...CATCAAGGCGGGAACATGGCAGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CCA 90 bp TCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCCATGTTCCCGCCTTGATGGCTGGAACTCGATGGTaGAAAGGGTGCCATCCACCT +
Preference number: 4 (lower is better)
Translates to: SAPPELCLPGHCHVPALMAGTRW*KGCHPP
Trigger: AGGTGGATGGCACCCTTTCCACCATCGAGTTCCAGC...CATCAAGGCGGGAACATGGCAGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CCA 90 bp AACAGGCACTGTGACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGTTGCTGGCTTTCCTACTaGGCTGTGCTGGGAGGGACG +
Preference number: 4 (lower is better)
Translates to: NRHCDLWRWSVHMSPAVGCWLSY*AVLGGT
Trigger: CGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCA...ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR GCA 90 bp TCAGCTCCTCCCGAGCTATGCCTGCCTGGACACTGCCATGTTCCCGCCTTGATGCTTCTTTCTTTTCAGTaGCTGCAAGGCAGCTCGCTT +
Preference number: 4 (lower is better)
Translates to: SAPPELCLPGHCHVPALMLLSFQ*LQGSSL
Trigger: AAGCGAGCTGCCTTGCAGGCACTGAAAAGAAAGAAG...CATCAAGGCGGGAACATGGCAGTGTCCAGGCAGGCATAGCTCGGGAGGAGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR GCA 90 bp AACAGGCACTGTGACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTTGGTACCTCCGTGTTGGTGTaGGAGTTCTCCAGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: NRHCDLWRWSVHMSPAVGTSVLV*EFSSAS
Trigger: AGAAGCGCTGGAGAACTCGCACACCAACACGGAGGT...ACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGTCACAGTGCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp ACCTGTGGAGATGGTCTGTCCACATGTCCCCAGCAGTaGGTTCCTTTAGCCAGTCCTTCCCTCAGGCGTGTT +
Preference number: 4 (lower is better)
Translates to: TCGDGLSTCPQQ*VPLASPSLRRV
Trigger: AACACGCCTGAGGGAAGGACTGGCTAAAGGAACCAACTGCTGGGGACATGTGGACAGACCATCTCCACAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp ACCCCTGTGCAGGCAGCTGTTGATGCTCTTGCCTCTTaGAAAGTCAGGAGTGAGGTTTGCTGCTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: TPVQAAVDALAS*KVRSEVCCSGC
Trigger: GCAGCCTGAGCAGCAAACCTCACTCCTGACTTTCAAAGAGGCAAGAGCATCAACAGCTGCCTGCACAGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
CDS-3UTR CCA 90 bp CCCAATCAATCCATGGGACTGTTCAAATGGGTGGAGGGAACACCAGAGCATCACGTAAGACCTCCGTGTTaGTGTGCGAGTTCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: PNQSMGLFKWVEGTPEHHVRPPC*CASSPA
Trigger: CGCTGGAGAACTCGCACACCAACACGGAGGTCTTAC...GTGATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp GACCAGGGAGGGACACTATTAGGAGGTGTGGCCTTGTaGGAGTTAGTCTGTCCTTGTTGGAGGAAGTGTGAC +
Preference number: 4 (lower is better)
Translates to: DQGGTLLGGVAL*ELVCPCWRKCD
Trigger: GTCACACTTCCTCCAACAAGGACAGACTAACTCCAACAAGGCCACACCTCCTAATAGTGTCCCTCCCTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR TCA 90 bp CCCAATCAATCCATGGGACTGTTCAAATGGGTGGAGGGAACACCAGAGCATCACTGCCATCCACCTGAGTaGGCTGCTTCTCAAACCTCT +
Preference number: 4 (lower is better)
Translates to: PNQSMGLFKWVEGTPEHHCHPPE*AASQTS
Trigger: AGAGGTTTGAGAAGCAGCTCACTCAGGTGGATGGCA...GTGATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR GCA 90 bp AGACTGACTGCCTGCTGGACATACGAGATTTTGAAGAGCCCTGGAAATAGACTATTTCCTACTGGGCTGTaGTGGGAGGGACGAGGACGG +
Preference number: 4 (lower is better)
Translates to: RLTACWTYEILKSPGNRLFPTGL*WEGRGR
Trigger: CCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAA...TAGTCTATTTCCAGGGCTCTTCAAAATCTCGTATGTCCAGCAGGCAGTCAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CCA 90 bp ACTCTTCCCAATCAATCCATGGGACTGTTCAAATGGGTGGAGGGAACACCAGAGTCCAGCGCTTCTCGCTaGAACTCGATGGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: TLPNQSMGLFKWVEGTPESSASR*NSMVER
Trigger: CCTTTCCACCATCGAGTTCCAGCGAGAAGCGCTGGA...CTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGGAAGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp TTGGACCAGGGAGGGACACTATTAGGAGGTGTGGCCTaGTTGGAGTTAGTCTGTCCTTGTTGGAGGAAGTGT +
Preference number: 4 (lower is better)
Translates to: LDQGGTLLGGVA*LELVCPCWRKC
Trigger: ACACTTCCTCCAACAAGGACAGACTAACTCCAACAAGGCCACACCTCCTAATAGTGTCCCTCCCTGGTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp ACACATGTGGCATTAGCAGAGAGCATCCTTTCACCTTaGCCCACTTCAGGAAAACACTCCTGCACGTCTCTG +
Preference number: 4 (lower is better)
Translates to: THVALAESILSP*PTSGKHSCTSL
Trigger: CAGAGACGTGCAGGAGTGTTTTCCTGAAGTGGGCAAAGGTGAAAGGATGCTCTCTGCTAATGCCACATGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp GTAATCCCAGCTCCAGTAGGTGGATCAGTGGTGTGTTaGACTCACGCAGACCCAGTCTTTAGAACATTGTCC +
Preference number: 4 (lower is better)
Translates to: VIPAPVGGSVVC*THADPVFRTLS
Trigger: GGACAATGTTCTAAAGACTGGGTCTGCGTGAGTCAAACACACCACTGATCCACCTACTGGAGCTGGGATTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
CDS-3UTR GCA 90 bp TGGGATTTGTCATTTCACTGCTGTGATATGGCACGAGTGACACCTAATTTTATCTGCCCTCCTGGAAGATaGTGCTCGAGACCGGTGCAC +
Preference number: 4 (lower is better)
Translates to: WDLSFHCCDMARVTPNFICPPGR*CSRPVH
Trigger: GTGCACCGGTCTCGAGCAGCATCTTCCAGGAGGGCA...GATAAAATTAGGTGTCACTCGTGCCATATCACAGCAGTGAAATGACAAATCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CCA 90 bp GTGGTGTGTTTGACTCACGCAGACCCAGTCTTTAGAACATTGTCCTTAGAACCTGGTACTCTTGCTTCTTaGCCAGCATCTCCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: VVCLTHADPVFRTLSLEPGTLAS*PASPPS
Trigger: AGACGGAGGAGATGCTGGCCAAGAAGCAAGAGTACC...AGGTTCTAAGGACAATGTTCTAAAGACTGGGTCTGCGTGAGTCAAACACACCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 72 bp GAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTaGGTGCATTTCGTTCCACGAAGTCACAACAAGCAG +
Preference number: 4 (lower is better)
Translates to: EGARSCQRNTRF*VHFVPRSHNKQ
Trigger: CTGCTTGTTGTGACTTCGTGGAACGAAATGCACCAAAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CCA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCCTTCCTCTGCCCTCCTaGAAGATGCTGCTCGAGACC +
Preference number: 4 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVLPLPS*KMLLET
Trigger: GGTCTCGAGCAGCATCTTCCAGGAGGGCAGAGGAAG...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp GGATACGGAGGAAGTGGACTGTTTAGAAACTGTTCTTaGGAGCAACTCCAGTCTGTGTTGTTAGGAAGTCAG +
Preference number: 4 (lower is better)
Translates to: GYGGSGLFRNCS*EQLQSVLLGSQ
Trigger: CTGACTTCCTAACAACACAGACTGGAGTTGCTCCAAAGAACAGTTTCTAAACAGTCCACTTCCTCCGTATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR GCA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCCAATTCCTCAAGCTCTaGCAGAAGCTCAGCCTCATC +
Preference number: 4 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVQFLKL*QKLSLI
Trigger: GATGAGGCTGAGCTTCTGGCAGAGCTTGAGGAATTG...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR GCA 90 bp ACTCTTCCCAATCAATCCATGGGACTGTTCAAATGGGTGGAGGGAACACCAGAGTTATTTAATTCCTCCTaGTCCAATTCCTCAAGCTCT +
Preference number: 4 (lower is better)
Translates to: TLPNQSMGLFKWVEGTPELFNSS*SNSSSS
Trigger: AGAGCTTGAGGAATTGGAGCAGGAGGAATTAAATAA...CTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGGAAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR GCA 90 bp GAACAAGTCTGTTCTAGCCATGTATTTATTTTTACTCTGCATGACCTGGATGCAGTCATCATCTTCCTCTaGCCTCCTGGAAGATGCTGC +
Preference number: 4 (lower is better)
Translates to: EQVCSSHVFIFTLHDLDAVIIFL*PPGRCC
Trigger: GCAGCATCTTCCAGGAGGGCAGAGGAAGATGATGAC...TGCATCCAGGTCATGCAGAGTAAAAATAAATACATGGCTAGAACAGACTTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CCA 90 bp GAACAAGTCTGTTCTAGCCATGTATTTATTTTTACTCTGCATGACCTGGATGCAGGTACTCTTGCTTCTTaGCCAGCATCTCCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: EQVCSSHVFIFTLHDLDAGTLAS*PASPPS
Trigger: AGACGGAGGAGATGCTGGCCAAGAAGCAAGAGTACC...TGCATCCAGGTCATGCAGAGTAAAAATAAATACATGGCTAGAACAGACTTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp CTGAAGCTTAAAAGGAACAAAAAGTGTAGTAGGCTCTaGATTCAGCTGCACACAGGGAAGATGGTCCATGTG +
Preference number: 4 (lower is better)
Translates to: LKLKRNKKCSRL*IQLHTGKMVHV
Trigger: CACATGGACCATCTTCCCTGTGTGCAGCTGAATCAAGAGCCTACTACACTTTTTGTTCCTTTTAAGCTTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
CDS-3UTR CCA 90 bp GAATCTATAAGACAGCCTCAATTAAATGTAGTCCTTATAAGAGTTGGGGTGGTCGCTTCTGAGATTTCCTaGGCAATGTCCTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ESIRQPQLNVVLIRVGVVASEIS*AMSCCS
Trigger: AGAGCAGCAGGACATTGCCCAGGAAATCTCAGAAGC...GACCACCCCAACTCTTATAAGGACTACATTTAATTGAGGCTGTCTTATAGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp CTACTCCCTCTTGCTAGAGGAGCTATAGATGGGATTTaGAAGTATGGGTCACAAAGGACCAAACTGATTAGT +
Preference number: 4 (lower is better)
Translates to: LLPLARGAIDGI*KYGSQRTKLIS
Trigger: ACTAATCAGTTTGGTCCTTTGTGACCCATACTTCAAAATCCCATCTATAGCTCCTCTAGCAAGAGGGAGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 72 bp AAGCCTACAGGTCATGTGCTGGGAACAGCATGGAATTaGATTTGTCAAAGTGTGGTTATTTGCACAGTCTCA +
Preference number: 4 (lower is better)
Translates to: KPTGHVLGTAWN*ICQSVVICTVS
Trigger: TGAGACTGTGCAAATAACCACACTTTGACAAATCAAATTCCATGCTGTTCCCAGCACATGACCTGTAGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 72 bp TGTTACTGCTTTCAGGTATTTCGGGAGATTCATCCATaGCTCCACTCAAAGCTCAACCGGCATAATAAACAT +
Preference number: 4 (lower is better)
Translates to: CYCFQVFREIHP*LHSKLNRHNKH
Trigger: ATGTTTATTATGCCGGTTGAGCTTTGAGTGGAGCAATGGATGAATCTCCCGAAATACCTGAAAGCAGTAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR TCA 90 bp GAACAAGTCTGTTCTAGCCATGTATTTATTTTTACTCTGCATGACCTGGATGCATGTCCTGCTGCTCTGTaGTATCTTGCATCAAGTCAT +
Preference number: 4 (lower is better)
Translates to: EQVCSSHVFIFTLHDLDACPAAL*YLASSH
Trigger: ATGACTTGATGCAAGATATCACAGAGCAGCAGGACA...TGCATCCAGGTCATGCAGAGTAAAAATAAATACATGGCTAGAACAGACTTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
3UTR CAA 72 bp CAAAGAAGAAACAAAGACAGACTACAGTATCCTAGTTaGTCCCTAAGAAAAGACTTTACTGGCCAGCCAATC +
Preference number: 4 (lower is better)
Translates to: QRRNKDRLQYPS*SLRKDFTGQPI
Trigger: GATTGGCTGGCCAGTAAAGTCTTTTCTTAGGGACAAACTAGGATACTGTAGTCTGTCTTTGTTTCTTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 72 bp GATATTTGGCCCATCTTTGAGACAGTTAAGAAGGATTaGTCAGATGGAAGAGAATTTTCTAGTCAAACTACA +
Preference number: 4 (lower is better)
Translates to: DIWPIFETVKKD*SDGREFSSQTT
Trigger: TGTAGTTTGACTAGAAAATTCTCTTCCATCTGACAAATCCTTCTTAACTGTCTCAAAGATGGGCCAAATATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
3UTR CAA 72 bp GATTGTGCTATGCTCTGTCTGTATGTAACAGGAAACTaGTGGGTTTTATTTACATTTGTTAGATCCAATAAC +
Preference number: 4 (lower is better)
Translates to: DCAMLCLYVTGN*WVLFTFVRSNN
Trigger: GTTATTGGATCTAACAAATGTAAATAAAACCCACAAGTTTCCTGTTACATACAGACAGAGCATAGCACAATC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
CDS GCA 90 bp CCCTCCTGGAAGATGCTGCTCGAGACCGGTGCACGGAGGAGGGCATaGTGGCTTTCCTACTGGGCTGTGCTGGGAGGGACGAGGACGGCA +
Preference number: 5 (lower is better)
Translates to: PSWKMLLETGARRRA*WLSYWAVLGGTRTA
Trigger: TGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAGCATCTTCCAGGAGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CCA 90 bp CTGCTCGAGACCGGTGCACGGAGGAGGGCATGCTGGCTTTCCTACTaGGCTGTGCTGGGAGGGACGAGGACGGCACATTTGGAAGCTCCA +
Preference number: 5 (lower is better)
Translates to: LLETGARRRACWLSY*AVLGGTRTAHLEAP
Trigger: TGGAGCTTCCAAATGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CCA 90 bp TCCTGGAAGATGCTGCTCGAGACCGGTGCACGGAGGAGGGCATGCTaGCTTTCCTACTGGGCTGTGCTGGGAGGGACGAGGACGGCACAT +
Preference number: 5 (lower is better)
Translates to: SWKMLLETGARRRAC*LSYWAVLGGTRTAH
Trigger: ATGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAGCATCTTCCAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS GCA 90 bp AGACCGGTGCACGGAGGAGGGCATGCTGGCTTTCCTACTGGGCTGTaGTGGGAGGGACGAGGACGGCACATTTGGAAGCTCCAGGCTTGT +
Preference number: 5 (lower is better)
Translates to: RPVHGGGHAGFPTGL*WEGRGRHIWKLQAC
Trigger: ACAAGCCTGGAGCTTCCAAATGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CCA 90 bp CCGGTGCACGGAGGAGGGCATGCTGGCTTTCCTACTGGGCTGTGCTaGGAGGGACGAGGACGGCACATTTGGAAGCTCCAGGCTTGTCAT +
Preference number: 5 (lower is better)
Translates to: PVHGGGHAGFPTGLC*EGRGRHIWKLQACH
Trigger: ATGACAAGCCTGGAGCTTCCAAATGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp ATACAGGAATTCAAACAAGACAGGAGCCTAGGGGCAGGAGCTGATGCAGGGGCCAGGTACTCTTGCTTCTaGGCCAGCATCTCCTCCGTC +
Preference number: 5 (lower is better)
Translates to: IQEFKQDRSLGAGADAGARYSCF*ASISSV
Trigger: GACGGAGGAGATGCTGGCCAAGAAGCAAGAGTACCT...GGCCCCTGCATCAGCTCCTGCCCCTAGGCTCCTGTCTTGTTTGAATTCCTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
CDS-3UTR CAA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTTGCAAGGCAGCTCGCTaGTTCTGGGAGCCGTGCTTC +
Preference number: 5 (lower is better)
Translates to: IGPSPWKEQEAARETPGFCKAAR*FWEPCF
Trigger: GAAGCACGGCTCCCAGAACAAGCGAGCTGCCTTGCA...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp ATCGGTCCAAGTCCCTGGAAGGAGCAAGAAGCTGCCAGAGAAACACCAGGTTTTCGTAAGACCTCCGTGTaGGTGTGCGAGTTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: IGPSPWKEQEAARETPGFRKTSV*VCEFSS
Trigger: GCTGGAGAACTCGCACACCAACACGGAGGTCTTACG...AAAACCTGGTGTTTCTCTGGCAGCTTCTTGCTCCTTCCAGGGACTTGGACCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp CTTTATTCTGGTAGACTGAGCTTCCATGTCATTGTCCTAAACCCTACAAATGTCAGGTACTCTTGCTTCTaGGCCAGCATCTCCTCCGTC +
Preference number: 5 (lower is better)
Translates to: LYSGRLSFHVIVLNPTNVRYSCF*ASISSV
Trigger: GACGGAGGAGATGCTGGCCAAGAAGCAAGAGTACCT...GACATTTGTAGGGTTTAGGACAATGACATGGAAGCTCAGTCTACCAGAATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp CCCAATCAATCCATGGGACTGTTCAAATGGGTGGAGGGAACACCAGAGCATCACTTGGAAGCTCCAGGCTaGTCATCTTCTTATTTAATT +
Preference number: 5 (lower is better)
Translates to: PNQSMGLFKWVEGTPEHHLEAPG*SSSYLI
Trigger: AATTAAATAAGAAGATGACAAGCCTGGAGCTTCCAA...GTGATGCTCTGGTGTTCCCTCCACCCATTTGAACAGTCCCATGGATTGATTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp GAACAAGTCTGTTCTAGCCATGTATTTATTTTTACTCTGCATGACCTGGATGCAGTTCTCCAGGTACTCTaGCTTCTTGGCCAGCATCTC +
Preference number: 5 (lower is better)
Translates to: EQVCSSHVFIFTLHDLDAVLQVL*LLGQHL
Trigger: GAGATGCTGGCCAAGAAGCAAGAGTACCTGGAGAAC...TGCATCCAGGTCATGCAGAGTAAAAATAAATACATGGCTAGAACAGACTTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp TACAAATGTCAAGAACGTATTCCTCAGTCAGCAAGCCTGAGGAGGACTCACACTCAAGCTGCTAGTTGTTaGAAGTCATCATCTTCCTCT +
Preference number: 5 (lower is better)
Translates to: YKCQERIPQSASLRRTHTQAASC*KSSSSS
Trigger: AGAGGAAGATGATGACTTCAAACAACTAGCAGCTTG...AGTGTGAGTCCTCCTCAGGCTTGCTGACTGAGGAATACGTTCTTGACATTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp ACCAGGAGAAGTTCTTTGCTGTGTCTCTCTCAACCACGTGAAGATCAGCGAAGAATCAAGTCATCAATTTaGTTGAGGTCCATGTTGTCA +
Preference number: 5 (lower is better)
Translates to: TRRSSLLCLSQPREDQRRIKSSI*LRSMLS
Trigger: TGACAACATGGACCTCAACAAAATTGATGACTTGAT...TCTTCGCTGATCTTCACGTGGTTGAGAGAGACACAGCAAAGAACTTCTCCTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS-3UTR CAA 90 bp TCCAACTTACCTTTTCATGATTTACACAGCTTTGTCATTATAAACCTCTCTGACGTTCTCCAGGTACTCTaGCTTCTTGGCCAGCATCTC +
Preference number: 5 (lower is better)
Translates to: SNLPFHDLHSFVIINLSDVLQVL*LLGQHL
Trigger: GAGATGCTGGCCAAGAAGCAAGAGTACCTGGAGAAC...GTCAGAGAGGTTTATAATGACAAAGCTGTGTAAATCATGAAAAGGTAAGTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191826.2
CDS-3UTR CAA 90 bp TGGGATTTGTCATTTCACTGCTGTGATATGGCACGAGTGACACCTAATTTTATCCTGCTCTGTGATATCTaGCATCAAGTCATCAATTTT +
Preference number: 5 (lower is better)
Translates to: WDLSFHCCDMARVTPNFILLCDI*HQVINF
Trigger: AAAATTGATGACTTGATGCAAGATATCACAGAGCAG...GATAAAATTAGGTGTCACTCGTGCCATATCACAGCAGTGAAATGACAAATCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CCA 72 bp ATGCTGCTCGAGACCGGTGCACGGAGGAGGGCATGCTaGCTTTCCTACTGGGCTGTGCTGGGAGGGACGAGG +
Preference number: 6 (lower is better)
Translates to: MLLETGARRRAC*LSYWAVLGGTR
Trigger: CCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAGCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS GCA 72 bp TCCTCTGCCCTCCTGGAAGATGCTGCTCGAGACCGGTaGACGGAGGAGGGCATGCTGGCTTTCCTACTGGGC +
Preference number: 6 (lower is better)
Translates to: SSALLEDAARDR*TEEGMLAFLLG
Trigger: GCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAGCATCTTCCAGGAGGGCAGAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CCA 72 bp ACCGGTGCACGGAGGAGGGCATGCTGGCTTTCCTACTaGGCTGTGCTGGGAGGGACGAGGACGGCACATTTG +
Preference number: 6 (lower is better)
Translates to: TGARRRACWLSY*AVLGGTRTAHL
Trigger: CAAATGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS GCA 72 bp GAAGTCATCATCTTCCTCTGCCCTCCTGGAAGATGCTaGTCGAGACCGGTGCACGGAGGAGGGCATGCTGGC +
Preference number: 6 (lower is better)
Translates to: EVIIFLCPPGRC*SRPVHGGGHAG
Trigger: GCCAGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAGCATCTTCCAGGAGGGCAGAGGAAGATGATGACTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS GCA 72 bp TTTGAAGTCATCATCTTCCTCTGCCCTCCTGGAAGATaGTGCTCGAGACCGGTGCACGGAGGAGGGCATGCT +
Preference number: 6 (lower is better)
Translates to: FEVIIFLCPPGR*CSRPVHGGGHA
Trigger: AGCATGCCCTCCTCCGTGCACCGGTCTCGAGCAGCATCTTCCAGGAGGGCAGAGGAAGATGATGACTTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CAA 90 bp TGGCTTTCCTACTGGGCTGTGCTGGGAGGGACGAGGACGGCACATTaGGAAGCTCCAGGCTTGTCATCTTCTTATTTAATTCCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: WLSYWAVLGGTRTAH*EAPGLSSSYLIPPA
Trigger: AGCAGGAGGAATTAAATAAGAAGATGACAAGCCTGGAGCTTCCAAATGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS CAA 72 bp GATTTCCTGGGCAATGTCCTGCTGCTCTGTGATATCTaGCATCAAGTCATCAATTTTGTTGAGGTCCATGTT +
Preference number: 6 (lower is better)
Translates to: DFLGNVLLLCDI*HQVINFVEVHV
Trigger: AACATGGACCTCAACAAAATTGATGACTTGATGCAAGATATCACAGAGCAGCAGGACATTGCCCAGGAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7
CDS GCA 72 bp GAAAATGCTTCTGAGATTTCCTGGGCAATGTCCTGCTaGTCTGTGATATCTTGCATCAAGTCATCAATTTTG +
Preference number: 6 (lower is better)
Translates to: ENASEISWAMSC*SVISCIKSSIL
Trigger: CAAAATTGATGACTTGATGCAAGATATCACAGAGCAGCAGGACATTGCCCAGGAAATCTCAGAAGCATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029049.7