Pregenerated sensors for CHMP4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038467Ensembl transcript IDs: ENSMUST00000044277.10
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCACCGCGTCCTGCCTGCCCTGCGCACGCACATGCCTGCCCGATaGACAGGCCACCAGAGTCCGTCTGGGCCCAGCCTCTGCTGGAAC | + |
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Preference number: 1 (lower is better) Translates to: LHRVLPALRTHMPAR*TGHQSPSGPSLCWN Trigger: GTTCCAGCAGAGGCTGGGCCCAGACGGACTCTGGTGGCCTGTGCATCGGGCAGGCATGTGCGTGCGCAGGGCAGGCAGGACGCGGTGCAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR-3UTR TCA 90 bp | TGCAAACGGCCGACCCTCCACAGAGGACGCAGCAGTGGGCTTAGCGCAGCCCAGGGCTACTGCTTTGGGTaGGAGCTGAGCGATGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: CKRPTLHRGRSSGLSAAQGYCFG*ELSDGG Trigger: GCCTCCATCGCTCAGCTCTCACCCAAAGCAGTAGCC...CTGGGCTGCGCTAAGCCCACTGCTGCGTCCTCTGTGGAGGGTCGGCCGTTTGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR-3UTR TCA 90 bp | GGGCTACATTTCCAGTTCGCTTCAACTGCAAACGGCCGACCCTCCACAGAGGACGCTTTGGGTGAGAGCTaGGCGATGGAGGCTGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: GLHFQFASTANGRPSTEDALGES*AMEAAC Trigger: GCAGGCAGCCTCCATCGCTCAGCTCTCACCCAAAGC...GTCCTCTGTGGAGGGTCGGCCGTTTGCAGTTGAAGCGAACTGGAAATGTAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR-3UTR CCA 90 bp | CCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGACCTTAGAGCTACGTGTGAGAGCTGAGCGATaGAGGCTGCCTGCACCGCGT | + |
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Preference number: 2 (lower is better) Translates to: PMSYVSIITTAMRTLELRVRAER*RLPAPR Trigger: ACGCGGTGCAGGCAGCCTCCATCGCTCAGCTCTCAC...ACGTAGCTCTAAGGTCCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR-3UTR CCA 90 bp | TGTATGCACACGTTTCCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGCCACCAGAGTCCGTCTaGGCCCAGCCTCTGCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: CMHTFPMSYVSIITTAMRPPESV*AQPLLE Trigger: TTCCAGCAGAGGCTGGGCCCAGACGGACTCTGGTGG...CCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGGAAACGTGTGCATACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR-3UTR TCA 90 bp | CCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGACCTTAGAGCTACGTGGGCCAGTACACAGGTaGCAGACAGAAACACAGCTC | + |
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Preference number: 2 (lower is better) Translates to: PMSYVSIITTAMRTLELRGPVHR*QTETQL Trigger: GAGCTGTGTTTCTGTCTGTCACCTGTGTACTGGCCC...ACGTAGCTCTAAGGTCCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR GCA 72 bp | GTCAGCTGCAGGGCTACATTTCCAGTTCGCTTCAACTaGAAACGGCCGACCCTCCACAGAGGACGCAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: VSCRATFPVRFN*KRPTLHRGRSS Trigger: ACTGCTGCGTCCTCTGTGGAGGGTCGGCCGTTTGCAGTTGAAGCGAACTGGAAATGTAGCCCTGCAGCTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR TCA 72 bp | CGACTTTTCTGCCAGTACCGTACACATCTTACAGAGTaGGACACGTCAGCTGCAGGGCTACATTTCCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: RLFCQYRTHLTE*DTSAAGLHFQF Trigger: GAACTGGAAATGTAGCCCTGCAGCTGACGTGTCTCACTCTGTAAGATGTGTACGGTACTGGCAGAAAAGTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| 3UTR-3UTR CAA 90 bp | TGTATGCACACGTTTCCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGAACAATCTTATTCGCTaGCAAGAGAACACATCCATT | + |
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Preference number: 3 (lower is better) Translates to: CMHTFPMSYVSIITTAMRNNLIR*QENTSI Trigger: AATGGATGTGTTCTCTTGCAAGCGAATAAGATTGTT...CCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGGAAACGTGTGCATACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CCA 90 bp | TGCAAACGGCCGACCCTCCACAGAGGACGCAGCAGTGGGCTTAGCGCAGCCCAGCCTCCGTGTTGGTGTTaGCGTTCTCTAGGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: CKRPTLHRGRSSGLSAAQPPCWC*RSLGPP Trigger: GGGAGGCCCTAGAGAACGCCAACACCAACACGGAGG...CTGGGCTGCGCTAAGCCCACTGCTGCGTCCTCTGTGGAGGGTCGGCCGTTTGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CCA 90 bp | GCAGTGGTGCGGCTACTGCTTTGGGTGAGAGCTGAGCGATGGAGGCTGCCTGCACCTCTTCCTTCTTCTTaGCGGGTTTGGATGGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: AVVRLLLWVRAERWRLPAPLPSS*RVWMVG Trigger: CCCTACCATCCAAACCCGCCAAGAAGAAGGAAGAGG...TGCAGGCAGCCTCCATCGCTCAGCTCTCACCCAAAGCAGTAGCCGCACCACTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CCA 90 bp | GGGCTACATTTCCAGTTCGCTTCAACTGCAAACGGCCGACCCTCCACAGAGGACTCTTCTTGGCGGGTTTaGATGGTAGGGCTACGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GLHFQFASTANGRPSTEDSSWRV*MVGLRR Trigger: CCTCCGTAGCCCTACCATCCAAACCCGCCAAGAAGA...GTCCTCTGTGGAGGGTCGGCCGTTTGCAGTTGAAGCGAACTGGAAATGTAGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR GCA 90 bp | GGGCTACATTTCCAGTTCGCTTCAACTGCAAACGGCCGACCCTCCACAGAGGACTTATTTTTGGTGCCGTaGTTCTTGGCAGCCGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: GLHFQFASTANGRPSTEDLFLVP*FLAAVS Trigger: GCTGACGGCTGCCAAGAAGCACGGCACCAAAAATAA...GTCCTCTGTGGAGGGTCGGCCGTTTGCAGTTGAAGCGAACTGGAAATGTAGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR GCA 90 bp | CACAGAGGACGCAGCAGTGGGCTTAGCGCAGCCCAGCAACTCAGTGTTGGATTTAAGTTCCTCCAACTCTaGCATGAGCTCATCCTCGTC | + |
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Preference number: 4 (lower is better) Translates to: HRGRSSGLSAAQQLSVGFKFLQL*HELILV Trigger: GACGAGGATGAGCTCATGGCAGAGTTGGAGGAACTT...AAATCCAACACTGAGTTGCTGGGCTGCGCTAAGCCCACTGCTGCGTCCTCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CCA 90 bp | TTTTCTGCCAGTACCGTACACATCTTACAGAGTGAGACACGTCAGCTGCAGGGCTGGTGCCGTGCTTCTTaGCAGCCGTCAGCTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: FSASTVHILQSETRQLQGWCRAS*QPSAPV Trigger: AACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCA...GCCCTGCAGCTGACGTGTCTCACTCTGTAAGATGTGTACGGTACTGGCAGAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR GCA 90 bp | CACGTCAGCTGCAGGGCTACATTTCCAGTTCGCTTCAACTGCAAACGGCCGACCGGAACTCCTGCTTCTTaGTTAACATCTCCTCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: HVSCRATFPVRFNCKRPTGTPAS*LTSPPC Trigger: ACACGGAGGAGATGTTAAGCAAGAAGCAGGAGTTCC...GGTCGGCCGTTTGCAGTTGAAGCGAACTGGAAATGTAGCCCTGCAGCTGACGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR GCA 90 bp | GGGGCCAGTACACAGGTGACAGACAGAAACACAGCTCTTGAGGGAACCAAAACTCGCGTTTATTTTTGGTaGCGTGCTTCTTGGCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: GASTQVTDRNTALEGTKTRVYFW*RASWQP Trigger: CGGCTGCCAAGAAGCACGGCACCAAAAATAAACGCG...AGTTTTGGTTCCCTCAAGAGCTGTGTTTCTGTCTGTCACCTGTGTACTGGCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CCA 90 bp | CCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGACCTTAGAGCTACGTCGTGGGCAGCCTTCATaGCCTTGGCGGCATAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PMSYVSIITTAMRTLELRRGQPS*PWRHSP Trigger: TGGGCTATGCCGCCAAGGCCATGAAGGCTGCCCACG...ACGTAGCTCTAAGGTCCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR TCA 90 bp | TCTAACAATCTTATTCGCTTGCAAGAGAACACATCCATTTCAGATCCGTGTCACCCTCCAACTCTGCCATaGGCTCATCCTCGTCGAACT | + |
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Preference number: 4 (lower is better) Translates to: SNNLIRLQENTSISDPCHPPTLP*AHPRRT Trigger: AGTTCGACGAGGATGAGCTCATGGCAGAGTTGGAGG...GTGACACGGATCTGAAATGGATGTGTTCTCTTGCAAGCGAATAAGATTGTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CCA 90 bp | TGTATGCACACGTTTCCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGCCCGCTGGAACTCGATaGTTGACAGGGTGCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: CMHTFPMSYVSIITTAMRPAGTR*LTGCHQ Trigger: TTGATGGCACCCTGTCAACCATCGAGTTCCAGCGGG...CCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGGAAACGTGTGCATACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR GCA 90 bp | TGTATGCACACGTTTCCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGGGTGCCATCAATTTGTaGCAGCTGCTTCTCATACCT | + |
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Preference number: 4 (lower is better) Translates to: CMHTFPMSYVSIITTAMRGAINL*QLLLIP Trigger: AGGTATGAGAAGCAGCTGGCACAAATTGATGGCACC...CCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGGAAACGTGTGCATACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | ACCGCGTCCTGCCTGCCCTGCGCACGCACATGCCTGCCCGATGCACAGGCCACCCAGGGTGCCATCAATTaGTGCCAGCTGCTTCTCATA | + |
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Preference number: 5 (lower is better) Translates to: TASCLPCARTCLPDAQATQGAIN*CQLLLI Trigger: TATGAGAAGCAGCTGGCACAAATTGATGGCACCCTG...GGTGGCCTGTGCATCGGGCAGGCATGTGCGTGCGCAGGGCAGGCAGGACGCGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | ACCGCGTCCTGCCTGCCCTGCGCACGCACATGCCTGCCCGATGCACAGGCCACCCTTGTCCAACTCCTCTaGTTCAAGTTCCTCCAACTC | + |
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Preference number: 5 (lower is better) Translates to: TASCLPCARTCLPDAQATLVQLL*FKFLQL Trigger: GAGTTGGAGGAACTTGAACAAGAGGAGTTGGACAAG...GGTGGCCTGTGCATCGGGCAGGCATGTGCGTGCGCAGGGCAGGCAGGACGCGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | CACAGAGGACGCAGCAGTGGGCTTAGCGCAGCCCAGCAACTCAGTGTTGGATTTTTGGTGCCGTGCTTCTaGGCAGCCGTCAGCTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: HRGRSSGLSAAQQLSVGFLVPCF*AAVSSC Trigger: ACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCAA...AAATCCAACACTGAGTTGCTGGGCTGCGCTAAGCCCACTGCTGCGTCCTCTGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS CCA 90 bp | ACCTCTTCTTGCGCTTCAGAGCCTGCAGGGCGGCGCGTTTATTTTTaGTGCCGTGCTTCTTGGCAGCCGTCAGCTCCTGTTCGATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: TSSCASEPAGRRVYF*CRASWQPSAPVRFS Trigger: AGAAAATCGAACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCAAAAATAAACGCGCCGCCCTGCAGGCTCTGAAGCGCAAGAAGAGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS GCA 90 bp | TCTTCTTGCGCTTCAGAGCCTGCAGGGCGGCGCGTTTATTTTTGGTaGCGTGCTTCTTGGCAGCCGTCAGCTCCTGTTCGATTTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SSCASEPAGRRVYFW*RASWQPSAPVRFSS Trigger: AGAAGAAAATCGAACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCAAAAATAAACGCGCCGCCCTGCAGGCTCTGAAGCGCAAGAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | GACAGGAGTGACAAGGGCCAGGATGGTAGACATGGGGCCAGTACACAGGTGACACCAAAGCCCACAGGTTaGGAGATAGCTGTGGAAATC | + |
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Preference number: 5 (lower is better) Translates to: DRSDKGQDGRHGASTQVTPKPTG*EIAVEI Trigger: GATTTCCACAGCTATCTCCAAACCTGTGGGCTTTGG...TGTCACCTGTGTACTGGCCCCATGTCTACCATCCTGGCCCTTGTCACTCCTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | GGCCAGGATGGTAGACATGGGGCCAGTACACAGGTGACAGACAGAAACACAGCTTCCTCTTCCTTCTTCTaGGCGGGTTTGGATGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: GQDGRHGASTQVTDRNTASSSFF*AGLDGR Trigger: CCTACCATCCAAACCCGCCAAGAAGAAGGAAGAGGA...AGCTGTGTTTCTGTCTGTCACCTGTGTACTGGCCCCATGTCTACCATCCTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | TCTAACAATCTTATTCGCTTGCAAGAGAACACATCCATTTCAGATCCGTGTCACTTCTTCTTGGCGGGTTaGGATGGTAGGGCTACGGAG | + |
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Preference number: 5 (lower is better) Translates to: SNNLIRLQENTSISDPCHFFLAG*DGRATE Trigger: CTCCGTAGCCCTACCATCCAAACCCGCCAAGAAGAA...GTGACACGGATCTGAAATGGATGTGTTCTCTTGCAAGCGAATAAGATTGTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS-3UTR CAA 90 bp | CCAATGAGCTATGTATCAATTATCACAACAGCAATGAGGACCTTAGAGCTACGTATCTCCAACAAATTCTaGTCCAACTCCTCTTGTTCA | + |
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Preference number: 5 (lower is better) Translates to: PMSYVSIITTAMRTLELRISNKF*SNSSCS Trigger: TGAACAAGAGGAGTTGGACAAGAATTTGTTGGAGAT...ACGTAGCTCTAAGGTCCTCATTGCTGTTGTGATAATTGATACATAGCTCATTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS GCA 72 bp | GCTTCAGAGCCTGCAGGGCGGCGCGTTTATTTTTGGTaGCGTGCTTCTTGGCAGCCGTCAGCTCCTGTTCGA | + |
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Preference number: 6 (lower is better) Translates to: ASEPAGRRVYFW*RASWQPSAPVR Trigger: TCGAACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCAAAAATAAACGCGCCGCCCTGCAGGCTCTGAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS CCA 72 bp | TGCGCTTCAGAGCCTGCAGGGCGGCGCGTTTATTTTTaGTGCCGTGCTTCTTGGCAGCCGTCAGCTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: CASEPAGRRVYF*CRASWQPSAPV Trigger: AACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCAAAAATAAACGCGCCGCCCTGCAGGCTCTGAAGCGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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| CDS CAA 72 bp | TTGCGCTTCAGAGCCTGCAGGGCGGCGCGTTTATTTTaGGTGCCGTGCTTCTTGGCAGCCGTCAGCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LRFRACRAARLF*VPCFLAAVSSC Trigger: ACAGGAGCTGACGGCTGCCAAGAAGCACGGCACCAAAAATAAACGCGCCGCCCTGCAGGCTCTGAAGCGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044277.10 |
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