Pregenerated sensors for CHMP2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004843Ensembl transcript IDs: ENSMUST00000004965.8, ENSMUST00000231259.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGACACCGTCGTCTCCCTATGCCATGCACAAAAGAACTCAGCTTaGACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTG | + |
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Preference number: 1 (lower is better) Translates to: SDTVVSLCHAQKNSA*TPLRPGCFYLRAKL Trigger: CAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTGCAAGCTGAGTTCTTTTGTGCATGGCATAGGGAGACGACGGTGTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR GCA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCGTCTCCCTATGCCATaGACAAAAGAACTCAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: VHNMFVLFKAGAKHILKGRLPMP*TKELSL Trigger: CAAGCTGAGTTCTTTTGTGCATGGCATAGGGAGACG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCAAGTCTCTTTACGTTaGCGCCTAATGGCATTAAAC | + |
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Preference number: 2 (lower is better) Translates to: VHNMFVLFKAGAKHILKGQVSLR*RLMALN Trigger: GTTTAATGCCATTAGGCGTCAACGTAAAGAGACTTG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR GCA 90 bp | AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCCCCCTCAGACCAGGGTaGTTCTACCTAAGAGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: NSYREKSQFLEERPKYSFPLRPG*FYLRAK Trigger: TTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGG...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR CCA 90 bp | AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTATCATTGGCACTCTTTaGCAAAGGATTCAAAGTAGC | + |
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Preference number: 2 (lower is better) Translates to: KSGSSTVKVAVLPLEEWLIIGTL*QRIQSS Trigger: GCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGAT...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR CCA 90 bp | AATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTAATAAACCCAAAGGGGGTAAATaGAAGAAAAGTAGAAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: NMFVLFKAGAKHILKGNKPKGGK*KKSRSS Trigger: TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGG...TTTATTACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR CAA 90 bp | CATGCACAAAAGAACTCAGCTTGCACACCCCTCAGACCAGGGTGCTTCTACCTATGCTCCCATTGTTTTTaGCATCATTGGCACTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: HAQKNSACTPLRPGCFYLCSHCF*HHWHSL Trigger: CAAAGAGTGCCAATGATGCAAAAAACAATGGGAGCA...TAGGTAGAAGCACCCTGGTCTGAGGGGTGTGCAAGCTGAGTTCTTTTGTGCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR CAA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTGGTTTAAAAATAACTaGGCAGCTGCACTGCCTATG | + |
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Preference number: 3 (lower is better) Translates to: VHNMFVLFKAGAKHILKGWFKNN*AAALPM Trigger: CATAGGCAGTGCAGCTGCCAAGTTATTTTTAAACCA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR CAA 90 bp | TACCAACTAGAATGTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCATGCTCCCATTGTTTTTaGCATCATTGGCACTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: YQLECSPKGGKWKKSRSSCSHCF*HHWHSL Trigger: CAAAGAGTGCCAATGATGCAAAAAACAATGGGAGCA...TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAACATTCTAGTTGGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR-3UTR CAA 90 bp | AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCGCTTTAAAAGACAGATaGGGTACTGTTCTCAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: NSYREKSQFLEERPKYSFALKDR*GTVLSL Trigger: GAGACTGAGAACAGTACCCAATCTGTCTTTTAAAGC...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | CACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTGCTCCCATTGTTCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: HTPQTRVLLPKSQTAPIVLMMAL*VPRSSR Trigger: TCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAG...AACAATGGGAGCAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| 3UTR CAA 72 bp | CGTCGTCTCCCTATGCCATGCACAAAAGAACTCAGCTaGCACACCCCTCAGACCAGGGTGCTTCTACCTAAG | + |
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Preference number: 4 (lower is better) Translates to: RRLPMPCTKELS*HTPQTRVLLPK Trigger: CTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTGCAAGCTGAGTTCTTTTGTGCATGGCATAGGGAGACGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | TCATTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGA | + |
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Preference number: 4 (lower is better) Translates to: SLALFGKGFKVAMGQEITLMMAL*VPRSSR Trigger: TCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAG...AGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | TTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTGCTTCTTGCAGCCGATaGAGCTTTGGCCATCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LALFGKGFKVAMGQEITVASCSR*SFGHLS Trigger: GGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAGC...AACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTGCTTCTTGCAGCCGATaGAGCTTTGGCCATCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: VHNMFVLFKAGAKHILKGASCSR*SFGHLS Trigger: GGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAGC...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR GCA 90 bp | ATCATTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGCTTGCATTGTCTTTaGAGTGGTAGACATGGCACC | + |
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Preference number: 4 (lower is better) Translates to: IIGTLWQRIQSSHGSGNNCLHCL*SGRHGT Trigger: GGTGCCATGTCTACCACTGCAAAGACAATGCAAGCA...GTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR GCA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTGCTTGCATTGTCTTTaGAGTGGTAGACATGGCACC | + |
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Preference number: 4 (lower is better) Translates to: VHNMFVLFKAGAKHILKGCLHCL*SGRHGT Trigger: GGTGCCATGTCTACCACTGCAAAGACAATGCAAGCA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCAGCCGATGGAGCTTTaGCCATCTTTCCAGAGATTT | + |
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Preference number: 4 (lower is better) Translates to: VHNMFVLFKAGAKHILKGQPMEL*PSFQRF Trigger: AAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | GCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACCTACCCCTAAAGCTTTaGGTTGACGTTCAATCTCTT | + |
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Preference number: 4 (lower is better) Translates to: ALFGKGFKVAMGQEITVHLPLKL*VDVQSL Trigger: AAGAGATTGAACGTCAACTCAAAGCTTTAGGGGTAG...GTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | TGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTCATGGTCCTACCCCTAAAGCTTTaGGTTGACGTTCAATCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: WQRIQSSHGSGNNCSLMVLPLKL*VDVQSL Trigger: AAGAGATTGAACGTCAACTCAAAGCTTTAGGGGTAG...GACCATGAGTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCCGGCCATCTTCATCTaGGAATTCATCACTTTCGTT | + |
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Preference number: 4 (lower is better) Translates to: VHNMFVLFKAGAKHILKGPAIFI*EFITFV Trigger: AACGAAAGTGATGAATTCCCAGATGAAGATGGCCGG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | AAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTCATGGTCTTCACAGCCGATGGAGCTTTaGCCATCTTTCCAGAGATTT | + |
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Preference number: 4 (lower is better) Translates to: KGFKVAMGQEITVHSWSSQPMEL*PSFQRF Trigger: AAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTG...TGAAGACCATGAGTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR GCA 90 bp | GCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTTCTTGTTGACTGCTTaGATTGTCTTTGCAGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: ALFGKGFKVAMGQEITVHFLLTA*IVFAVV Trigger: TACCACTGCAAAGACAATGCAAGCAGTCAACAAGAA...GTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGATTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAA | + |
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Preference number: 4 (lower is better) Translates to: VLPKGVNGRKVEAQDSLRFCFRR*TSCLAK Trigger: TTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAA...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | ATCATTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACCATCCAGGGTGTCATTaGTCATTTCTTCAGTCATTT | + |
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Preference number: 4 (lower is better) Translates to: IIGTLWQRIQSSHGSGNNHPGCH*SFLQSF Trigger: AAATGACTGAAGAAATGATCAATGACACCCTGGATG...GTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR GCA 90 bp | GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGATTCTTGTTGACTGCTTaGATTGTCTTTGCAGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: VLPKGVNGRKVEAQDSLRFLLTA*IVFAVV Trigger: TACCACTGCAAAGACAATGCAAGCAGTCAACAAGAA...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | TACCAACTAGAATGTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCACATCCAGGGTGTCATTaGTCATTTCTTCAGTCATTT | + |
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Preference number: 4 (lower is better) Translates to: YQLECSPKGGKWKKSRSSHPGCH*SFLQSF Trigger: AAATGACTGAAGAAATGATCAATGACACCCTGGATG...TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAACATTCTAGTTGGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KSGSSTVKVAVLPLEEWLISSRT*FTMSWL Trigger: AAGCCAGGACATCGTGAATCAAGTTCTTGATGAAAT...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CCA 90 bp | AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCTTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAA | + |
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Preference number: 4 (lower is better) Translates to: NSYREKSQFLEERPKYSFFCFRR*TSCLAK Trigger: TTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAA...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: NSYREKSQFLEERPKYSFISSRT*FTMSWL Trigger: AAGCCAGGACATCGTGAATCAAGTTCTTGATGAAAT...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR TCA 90 bp | AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCCCTAAAGCTTTGAGTTaGCGTTCAATCTCTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: NSYREKSQFLEERPKYSFPKALS*RSISSS Trigger: TGATGAAGAGATTGAACGTCAACTCAAAGCTTTAGG...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CCA 90 bp | TTCTCCTGTTTCTCTAAGGCTGCTCGGTCCCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGATTCTGTTCCTTTATGACATCGTCC | + |
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Preference number: 5 (lower is better) Translates to: FSCFSKAARSLMMAL*VPRSSRFCSFMTSS Trigger: GGACGATGTCATAAAGGAACAGAATCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAAACAGGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004965.8 |
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| CDS CCA 90 bp | TTCTCCTGTTTCTCTAAGGCTGCTCGGTCCCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGATTCTGTTCCTTTATGACATTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FSCFSKAARSLMMAL*VPRSSRFCSFMTFL Trigger: AAGAAATGTCATAAAGGAACAGAATCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAAACAGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | CACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTGCTCCCATTGTTTTACAGCGAACGTTCTaGTCTTCTGTTTCCGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: HTPQTRVLLPKSQTAPIVLQRTF*SSVSVG Trigger: ACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAA...AACAATGGGAGCAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS GCA 90 bp | CTTACAGCGAACGTTCTTGTCTTCTGTTTCCGTAGGTGGACAAGCTaGTTAGCTAAAACCCTGCACGCTTCCTTATTACCAATCTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LTANVLVFCFRRWTS*LAKTLHASLLPILA Trigger: GGCCAAGATTGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | CACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTGCTCCCATTGTTGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: HTPQTRVLLPKSQTAPIVGSIFL*TACIVF Trigger: AAAGACAATGCAAGCAGTCAACAAGAAAATGGATCC...AACAATGGGAGCAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | TTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCAGACGGTAAGCTTCTaGCAGCCGATGGAGCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: LALFGKGFKVAMGQEITVQTVSF*QPMELW Trigger: CCAAAGCTCCATCGGCTGCAAGAAGCTTACCGTCTG...AACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGACAGACGGTAAGCTTCTaGCAGCCGATGGAGCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: VLPKGVNGRKVEAQDSLRQTVSF*QPMELW Trigger: CCAAAGCTCCATCGGCTGCAAGAAGCTTACCGTCTG...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CCA 90 bp | ACTTTTGAGCTTACAGCGAACGTTCTTGTCTTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAAACCCTGCACGCTTCCTTATTACCA | + |
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Preference number: 5 (lower is better) Translates to: TFELTANVLVFCFRR*TSCLAKTLHASLLP Trigger: TGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAAGCTCAAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CCA 90 bp | TGCATTGTCTTTGCAGTGGTAGACATGGCACCGGCCATCTTCATCTaGGAATTCATCACTTTCGTTTGTGTGGACATAGAGGTGACTTTT | + |
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Preference number: 5 (lower is better) Translates to: CIVFAVVDMAPAIFI*EFITFVCVDIEVTF Trigger: AAAAGTCACCTCTATGTCCACACAAACGAAAGTGATGAATTCCCAGATGAAGATGGCCGGTGCCATGTCTACCACTGCAAAGACAATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | TGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTCATGGTCATTCATCACTTTCGTTaGTGTGGACATAGAGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: WQRIQSSHGSGNNCSLMVIHHFR*CGHRGD Trigger: GTCACCTCTATGTCCACACAAACGAAAGTGATGAAT...GACCATGAGTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTTTCTTGTTGACTGCTaGCATTGTCTTTGCAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: VHNMFVLFKAGAKHILKGFLVDC*HCLCSG Trigger: ACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTGTGGATCCATTTTCTaGTTGACTGCTTGCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: VHNMFVLFKAGAKHILKGCGSIF*LTACIV Trigger: GACAATGCAAGCAGTCAACAAGAAAATGGATCCACA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS TCA 90 bp | TTGGCCATCTTTCCAGAGATTTCAATCCCAATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTTTCTTCTTCATCATCAGAGCCATCA | + |
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Preference number: 5 (lower is better) Translates to: LAIFPEISIPISSRT*FTMSWLSSSSSEPS Trigger: TGATGGCTCTGATGATGAAGAAGAAAGCCAGGACATCGTGAATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTTTACAGCGAACGTTCTaGTCTTCTGTTTCCGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: KSGSSTVKVAVLPLEEWLLQRTF*SSVSVG Trigger: ACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAA...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGATCTGGAAATTCTGCATaGTTTGTAGTGTCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: VLPKGVNGRKVEAQDSLRSGNSA*FVVSSV Trigger: CACAGAAGACACTACAAACAATGCAGAATTTCCAGA...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTATTCATCACTTTCGTTaGTGTGGACATAGAGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: KSGSSTVKVAVLPLEEWLIHHFR*CGHRGD Trigger: GTCACCTCTATGTCCACACAAACGAAAGTGATGAAT...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | TACCAACTAGAATGTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: YQLECSPKGGKWKKSRSSGSIFL*TACIVF Trigger: AAAGACAATGCAAGCAGTCAACAAGAAAATGGATCC...TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAACATTCTAGTTGGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTTCTGGAAATTCTGCATaGTTTGTAGTGTCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: KSGSSTVKVAVLPLEEWLSGNSA*FVVSSV Trigger: CACAGAAGACACTACAAACAATGCAGAATTTCCAGA...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS-3UTR CAA 90 bp | AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCTGTGGATCCATTTTCTaGTTGACTGCTTGCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: NSYREKSQFLEERPKYSFCGSIF*LTACIV Trigger: GACAATGCAAGCAGTCAACAAGAAAATGGATCCACA...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CCA 72 bp | TTCTCTAAGGCTGCTCGGTCCCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGATTCTGTTCCTTTATG | + |
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Preference number: 6 (lower is better) Translates to: FSKAARSLMMAL*VPRSSRFCSFM Trigger: CATAAAGGAACAGAATCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CCA 72 bp | CTTACAGCGAACGTTCTTGTCTTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAAACCCTGCACGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LTANVLVFCFRR*TSCLAKTLHAS Trigger: GGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CCA 72 bp | TTTGCAGTGGTAGACATGGCACCGGCCATCTTCATCTaGGAATTCATCACTTTCGTTTGTGTGGACATAGAG | + |
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Preference number: 6 (lower is better) Translates to: FAVVDMAPAIFI*EFITFVCVDIE Trigger: CTCTATGTCCACACAAACGAAAGTGATGAATTCCCAGATGAAGATGGCCGGTGCCATGTCTACCACTGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CAA 90 bp | TTTGAAGTGGAGGCAGACGGTAAGCTTCTTGCAGCCGATGGAGCTTaGGCCATCTTTCCAGAGATTTCAATCCCAATTTCATCAAGAACT | + |
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Preference number: 6 (lower is better) Translates to: FEVEADGKLLAADGA*AIFPEISIPISSRT Trigger: AGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAGCTTACCGTCTGCCTCCACTTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS GCA 72 bp | AACGTTCTTGTCTTCTGTTTCCGTAGGTGGACAAGCTaGTTAGCTAAAACCCTGCACGCTTCCTTATTACCA | + |
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Preference number: 6 (lower is better) Translates to: NVLVFCFRRWTS*LAKTLHASLLP Trigger: TGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CAA 90 bp | AAATTCTGCATTGTTTGTAGTGTCTTCTGTGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTTGCAGTGGTAGACATGGCACCGGCC | + |
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Preference number: 6 (lower is better) Translates to: KFCIVCSVFCGSIFL*TACIVFAVVDMAPA Trigger: GGCCGGTGCCATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGATCCACAGAAGACACTACAAACAATGCAGAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CAA 90 bp | TGGAAATTCTGCATTGTTTGTAGTGTCTTCTGTGGATCCATTTTCTaGTTGACTGCTTGCATTGTCTTTGCAGTGGTAGACATGGCACCG | + |
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Preference number: 6 (lower is better) Translates to: WKFCIVCSVFCGSIF*LTACIVFAVVDMAP Trigger: CGGTGCCATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGATCCACAGAAGACACTACAAACAATGCAGAATTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CAA 90 bp | TTTGGCCATCTTTCCAGAGATTTCAATCCCAATTTCATCAAGAACTaGATTCACGATGTCCTGGCTTTCTTCTTCATCATCAGAGCCATC | + |
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Preference number: 6 (lower is better) Translates to: FGHLSRDFNPNFIKN*IHDVLAFFFIIRAI Trigger: GATGGCTCTGATGATGAAGAAGAAAGCCAGGACATCGTGAATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CAA 72 bp | TTAGCTAAAACCCTGCACGCTTCCTTATTACCAATCTaGGCCATCTTCTTAATTTCTAACTCCAGCTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LAKTLHASLLPI*AIFLISNSSCF Trigger: GAAACAGCTGGAGTTAGAAATTAAGAAGATGGCCAAGATTGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS CAA 72 bp | ATTGTTTGTAGTGTCTTCTGTGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTTGCAGTGGTAGACATG | + |
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Preference number: 6 (lower is better) Translates to: IVCSVFCGSIFL*TACIVFAVVDM Trigger: CATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGATCCACAGAAGACACTACAAACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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| CDS TCA 72 bp | TTTCCAGAGATTTCAATCCCAATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTTTCTTCTTCATCATCA | + |
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Preference number: 6 (lower is better) Translates to: FPEISIPISSRT*FTMSWLSSSSS Trigger: TGATGATGAAGAAGAAAGCCAGGACATCGTGAATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004965.8 ENSMUST00000231259.2 |
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