RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHMP2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004843

Ensembl transcript IDs: ENSMUST00000004965.8, ENSMUST00000231259.2

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGTGACACCGTCGTCTCCCTATGCCATGCACAAAAGAACTCAGCTTaGACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTG +
Preference number: 1 (lower is better)
Translates to: SDTVVSLCHAQKNSA*TPLRPGCFYLRAKL
Trigger: CAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTGCAAGCTGAGTTCTTTTGTGCATGGCATAGGGAGACGACGGTGTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR GCA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCGTCTCCCTATGCCATaGACAAAAGAACTCAGCTTG +
Preference number: 2 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGRLPMP*TKELSL
Trigger: CAAGCTGAGTTCTTTTGTGCATGGCATAGGGAGACG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR TCA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCAAGTCTCTTTACGTTaGCGCCTAATGGCATTAAAC +
Preference number: 2 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGQVSLR*RLMALN
Trigger: GTTTAATGCCATTAGGCGTCAACGTAAAGAGACTTG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR GCA 90 bp AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCCCCCTCAGACCAGGGTaGTTCTACCTAAGAGCCAAA +
Preference number: 2 (lower is better)
Translates to: NSYREKSQFLEERPKYSFPLRPG*FYLRAK
Trigger: TTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGG...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR CCA 90 bp AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTATCATTGGCACTCTTTaGCAAAGGATTCAAAGTAGC +
Preference number: 2 (lower is better)
Translates to: KSGSSTVKVAVLPLEEWLIIGTL*QRIQSS
Trigger: GCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGAT...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR CCA 90 bp AATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTAATAAACCCAAAGGGGGTAAATaGAAGAAAAGTAGAAGCTCA +
Preference number: 2 (lower is better)
Translates to: NMFVLFKAGAKHILKGNKPKGGK*KKSRSS
Trigger: TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGG...TTTATTACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR CAA 90 bp CATGCACAAAAGAACTCAGCTTGCACACCCCTCAGACCAGGGTGCTTCTACCTATGCTCCCATTGTTTTTaGCATCATTGGCACTCTTTG +
Preference number: 3 (lower is better)
Translates to: HAQKNSACTPLRPGCFYLCSHCF*HHWHSL
Trigger: CAAAGAGTGCCAATGATGCAAAAAACAATGGGAGCA...TAGGTAGAAGCACCCTGGTCTGAGGGGTGTGCAAGCTGAGTTCTTTTGTGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR CAA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTGGTTTAAAAATAACTaGGCAGCTGCACTGCCTATG +
Preference number: 3 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGWFKNN*AAALPM
Trigger: CATAGGCAGTGCAGCTGCCAAGTTATTTTTAAACCA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR CAA 90 bp TACCAACTAGAATGTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCATGCTCCCATTGTTTTTaGCATCATTGGCACTCTTTG +
Preference number: 3 (lower is better)
Translates to: YQLECSPKGGKWKKSRSSCSHCF*HHWHSL
Trigger: CAAAGAGTGCCAATGATGCAAAAAACAATGGGAGCA...TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAACATTCTAGTTGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR-3UTR CAA 90 bp AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCGCTTTAAAAGACAGATaGGGTACTGTTCTCAGTCTC +
Preference number: 3 (lower is better)
Translates to: NSYREKSQFLEERPKYSFALKDR*GTVLSL
Trigger: GAGACTGAGAACAGTACCCAATCTGTCTTTTAAAGC...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp CACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTGCTCCCATTGTTCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: HTPQTRVLLPKSQTAPIVLMMAL*VPRSSR
Trigger: TCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAG...AACAATGGGAGCAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
3UTR CAA 72 bp CGTCGTCTCCCTATGCCATGCACAAAAGAACTCAGCTaGCACACCCCTCAGACCAGGGTGCTTCTACCTAAG +
Preference number: 4 (lower is better)
Translates to: RRLPMPCTKELS*HTPQTRVLLPK
Trigger: CTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTGCAAGCTGAGTTCTTTTGTGCATGGCATAGGGAGACGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp TCATTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: SLALFGKGFKVAMGQEITLMMAL*VPRSSR
Trigger: TCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAG...AGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp TTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTGCTTCTTGCAGCCGATaGAGCTTTGGCCATCTTTCC +
Preference number: 4 (lower is better)
Translates to: LALFGKGFKVAMGQEITVASCSR*SFGHLS
Trigger: GGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAGC...AACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTGCTTCTTGCAGCCGATaGAGCTTTGGCCATCTTTCC +
Preference number: 4 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGASCSR*SFGHLS
Trigger: GGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAGC...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR GCA 90 bp ATCATTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGCTTGCATTGTCTTTaGAGTGGTAGACATGGCACC +
Preference number: 4 (lower is better)
Translates to: IIGTLWQRIQSSHGSGNNCLHCL*SGRHGT
Trigger: GGTGCCATGTCTACCACTGCAAAGACAATGCAAGCA...GTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR GCA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTGCTTGCATTGTCTTTaGAGTGGTAGACATGGCACC +
Preference number: 4 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGCLHCL*SGRHGT
Trigger: GGTGCCATGTCTACCACTGCAAAGACAATGCAAGCA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCAGCCGATGGAGCTTTaGCCATCTTTCCAGAGATTT +
Preference number: 4 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGQPMEL*PSFQRF
Trigger: AAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp GCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACCTACCCCTAAAGCTTTaGGTTGACGTTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: ALFGKGFKVAMGQEITVHLPLKL*VDVQSL
Trigger: AAGAGATTGAACGTCAACTCAAAGCTTTAGGGGTAG...GTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp TGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTCATGGTCCTACCCCTAAAGCTTTaGGTTGACGTTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: WQRIQSSHGSGNNCSLMVLPLKL*VDVQSL
Trigger: AAGAGATTGAACGTCAACTCAAAGCTTTAGGGGTAG...GACCATGAGTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTCCGGCCATCTTCATCTaGGAATTCATCACTTTCGTT +
Preference number: 4 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGPAIFI*EFITFV
Trigger: AACGAAAGTGATGAATTCCCAGATGAAGATGGCCGG...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp AAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTCATGGTCTTCACAGCCGATGGAGCTTTaGCCATCTTTCCAGAGATTT +
Preference number: 4 (lower is better)
Translates to: KGFKVAMGQEITVHSWSSQPMEL*PSFQRF
Trigger: AAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTG...TGAAGACCATGAGTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR GCA 90 bp GCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTTCTTGTTGACTGCTTaGATTGTCTTTGCAGTGGTA +
Preference number: 4 (lower is better)
Translates to: ALFGKGFKVAMGQEITVHFLLTA*IVFAVV
Trigger: TACCACTGCAAAGACAATGCAAGCAGTCAACAAGAA...GTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGATTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAA +
Preference number: 4 (lower is better)
Translates to: VLPKGVNGRKVEAQDSLRFCFRR*TSCLAK
Trigger: TTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAA...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp ATCATTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACCATCCAGGGTGTCATTaGTCATTTCTTCAGTCATTT +
Preference number: 4 (lower is better)
Translates to: IIGTLWQRIQSSHGSGNNHPGCH*SFLQSF
Trigger: AAATGACTGAAGAAATGATCAATGACACCCTGGATG...GTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAATGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR GCA 90 bp GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGATTCTTGTTGACTGCTTaGATTGTCTTTGCAGTGGTA +
Preference number: 4 (lower is better)
Translates to: VLPKGVNGRKVEAQDSLRFLLTA*IVFAVV
Trigger: TACCACTGCAAAGACAATGCAAGCAGTCAACAAGAA...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp TACCAACTAGAATGTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCACATCCAGGGTGTCATTaGTCATTTCTTCAGTCATTT +
Preference number: 4 (lower is better)
Translates to: YQLECSPKGGKWKKSRSSHPGCH*SFLQSF
Trigger: AAATGACTGAAGAAATGATCAATGACACCCTGGATG...TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAACATTCTAGTTGGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: KSGSSTVKVAVLPLEEWLISSRT*FTMSWL
Trigger: AAGCCAGGACATCGTGAATCAAGTTCTTGATGAAAT...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CCA 90 bp AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCTTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAA +
Preference number: 4 (lower is better)
Translates to: NSYREKSQFLEERPKYSFFCFRR*TSCLAK
Trigger: TTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAA...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: NSYREKSQFLEERPKYSFISSRT*FTMSWL
Trigger: AAGCCAGGACATCGTGAATCAAGTTCTTGATGAAAT...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR TCA 90 bp AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCCCTAAAGCTTTGAGTTaGCGTTCAATCTCTTCATCA +
Preference number: 4 (lower is better)
Translates to: NSYREKSQFLEERPKYSFPKALS*RSISSS
Trigger: TGATGAAGAGATTGAACGTCAACTCAAAGCTTTAGG...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CCA 90 bp TTCTCCTGTTTCTCTAAGGCTGCTCGGTCCCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGATTCTGTTCCTTTATGACATCGTCC +
Preference number: 5 (lower is better)
Translates to: FSCFSKAARSLMMAL*VPRSSRFCSFMTSS
Trigger: GGACGATGTCATAAAGGAACAGAATCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAAACAGGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004965.8
CDS CCA 90 bp TTCTCCTGTTTCTCTAAGGCTGCTCGGTCCCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGATTCTGTTCCTTTATGACATTTCTT +
Preference number: 5 (lower is better)
Translates to: FSCFSKAARSLMMAL*VPRSSRFCSFMTFL
Trigger: AAGAAATGTCATAAAGGAACAGAATCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAAACAGGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp CACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTGCTCCCATTGTTTTACAGCGAACGTTCTaGTCTTCTGTTTCCGTAGGT +
Preference number: 5 (lower is better)
Translates to: HTPQTRVLLPKSQTAPIVLQRTF*SSVSVG
Trigger: ACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAA...AACAATGGGAGCAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS GCA 90 bp CTTACAGCGAACGTTCTTGTCTTCTGTTTCCGTAGGTGGACAAGCTaGTTAGCTAAAACCCTGCACGCTTCCTTATTACCAATCTTGGCC +
Preference number: 5 (lower is better)
Translates to: LTANVLVFCFRRWTS*LAKTLHASLLPILA
Trigger: GGCCAAGATTGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp CACACCCCTCAGACCAGGGTGCTTCTACCTAAGAGCCAAACTGCTCCCATTGTTGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTT +
Preference number: 5 (lower is better)
Translates to: HTPQTRVLLPKSQTAPIVGSIFL*TACIVF
Trigger: AAAGACAATGCAAGCAGTCAACAAGAAAATGGATCC...AACAATGGGAGCAGTTTGGCTCTTAGGTAGAAGCACCCTGGTCTGAGGGGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp TTGGCACTCTTTGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCAGACGGTAAGCTTCTaGCAGCCGATGGAGCTTTGG +
Preference number: 5 (lower is better)
Translates to: LALFGKGFKVAMGQEITVQTVSF*QPMELW
Trigger: CCAAAGCTCCATCGGCTGCAAGAAGCTTACCGTCTG...AACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCAAAGAGTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGACAGACGGTAAGCTTCTaGCAGCCGATGGAGCTTTGG +
Preference number: 5 (lower is better)
Translates to: VLPKGVNGRKVEAQDSLRQTVSF*QPMELW
Trigger: CCAAAGCTCCATCGGCTGCAAGAAGCTTACCGTCTG...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CCA 90 bp ACTTTTGAGCTTACAGCGAACGTTCTTGTCTTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAAACCCTGCACGCTTCCTTATTACCA +
Preference number: 5 (lower is better)
Translates to: TFELTANVLVFCFRR*TSCLAKTLHASLLP
Trigger: TGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAAGCTCAAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CCA 90 bp TGCATTGTCTTTGCAGTGGTAGACATGGCACCGGCCATCTTCATCTaGGAATTCATCACTTTCGTTTGTGTGGACATAGAGGTGACTTTT +
Preference number: 5 (lower is better)
Translates to: CIVFAVVDMAPAIFI*EFITFVCVDIEVTF
Trigger: AAAAGTCACCTCTATGTCCACACAAACGAAAGTGATGAATTCCCAGATGAAGATGGCCGGTGCCATGTCTACCACTGCAAAGACAATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp TGGCAAAGGATTCAAAGTAGCCATGGGTCAGGAAATAACTGTTCACTCATGGTCATTCATCACTTTCGTTaGTGTGGACATAGAGGTGAC +
Preference number: 5 (lower is better)
Translates to: WQRIQSSHGSGNNCSLMVIHHFR*CGHRGD
Trigger: GTCACCTCTATGTCCACACAAACGAAAGTGATGAAT...GACCATGAGTGAACAGTTATTTCCTGACCCATGGCTACTTTGAATCCTTTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTTTCTTGTTGACTGCTaGCATTGTCTTTGCAGTGGT +
Preference number: 5 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGFLVDC*HCLCSG
Trigger: ACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp GTGCACAATATGTTCGTGCTATTTAAGGCAGGTGCCAAGCACATTTTGAAAGGTTGTGGATCCATTTTCTaGTTGACTGCTTGCATTGTC +
Preference number: 5 (lower is better)
Translates to: VHNMFVLFKAGAKHILKGCGSIF*LTACIV
Trigger: GACAATGCAAGCAGTCAACAAGAAAATGGATCCACA...ACCTTTCAAAATGTGCTTGGCACCTGCCTTAAATAGCACGAACATATTGTGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS TCA 90 bp TTGGCCATCTTTCCAGAGATTTCAATCCCAATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTTTCTTCTTCATCATCAGAGCCATCA +
Preference number: 5 (lower is better)
Translates to: LAIFPEISIPISSRT*FTMSWLSSSSSEPS
Trigger: TGATGGCTCTGATGATGAAGAAGAAAGCCAGGACATCGTGAATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTTTACAGCGAACGTTCTaGTCTTCTGTTTCCGTAGGT +
Preference number: 5 (lower is better)
Translates to: KSGSSTVKVAVLPLEEWLLQRTF*SSVSVG
Trigger: ACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAA...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp GTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGACAGTTTAAGATCTGGAAATTCTGCATaGTTTGTAGTGTCTTCTGTG +
Preference number: 5 (lower is better)
Translates to: VLPKGVNGRKVEAQDSLRSGNSA*FVVSSV
Trigger: CACAGAAGACACTACAAACAATGCAGAATTTCCAGA...TCTTAAACTGTCCTGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTATTCATCACTTTCGTTaGTGTGGACATAGAGGTGAC +
Preference number: 5 (lower is better)
Translates to: KSGSSTVKVAVLPLEEWLIHHFR*CGHRGD
Trigger: GTCACCTCTATGTCCACACAAACGAAAGTGATGAAT...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp TACCAACTAGAATGTTCTCCCAAAGGGGGTAAATGGAAGAAAAGTAGAAGCTCAGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTT +
Preference number: 5 (lower is better)
Translates to: YQLECSPKGGKWKKSRSSGSIFL*TACIVF
Trigger: AAAGACAATGCAAGCAGTCAACAAGAAAATGGATCC...TGAGCTTCTACTTTTCTTCCATTTACCCCCTTTGGGAGAACATTCTAGTTGGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp AAATCTGGATCAAGTACTGTCAAAGTAGCAGTCCTTCCTTTAGAAGAATGGCTTTCTGGAAATTCTGCATaGTTTGTAGTGTCTTCTGTG +
Preference number: 5 (lower is better)
Translates to: KSGSSTVKVAVLPLEEWLSGNSA*FVVSSV
Trigger: CACAGAAGACACTACAAACAATGCAGAATTTCCAGA...AAGCCATTCTTCTAAAGGAAGGACTGCTACTTTGACAGTACTTGATCCAGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS-3UTR CAA 90 bp AATTCATACAGAGAAAAATCGCAGTTCTTGGAAGAAAGACCAAAGTATAGCTTCTGTGGATCCATTTTCTaGTTGACTGCTTGCATTGTC +
Preference number: 5 (lower is better)
Translates to: NSYREKSQFLEERPKYSFCGSIF*LTACIV
Trigger: GACAATGCAAGCAGTCAACAAGAAAATGGATCCACA...GAAGCTATACTTTGGTCTTTCTTCCAAGAACTGCGATTTTTCTCTGTATGAATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CCA 72 bp TTCTCTAAGGCTGCTCGGTCCCTGATGATGGCCCTCTaGGTGCCACGCAGCTCTCGATTCTGTTCCTTTATG +
Preference number: 6 (lower is better)
Translates to: FSKAARSLMMAL*VPRSSRFCSFM
Trigger: CATAAAGGAACAGAATCGAGAGCTGCGTGGCACCCAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CCA 72 bp CTTACAGCGAACGTTCTTGTCTTCTGTTTCCGTAGGTaGACAAGCTGCTTAGCTAAAACCCTGCACGCTTCC +
Preference number: 6 (lower is better)
Translates to: LTANVLVFCFRR*TSCLAKTLHAS
Trigger: GGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTTCGCTGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CCA 72 bp TTTGCAGTGGTAGACATGGCACCGGCCATCTTCATCTaGGAATTCATCACTTTCGTTTGTGTGGACATAGAG +
Preference number: 6 (lower is better)
Translates to: FAVVDMAPAIFI*EFITFVCVDIE
Trigger: CTCTATGTCCACACAAACGAAAGTGATGAATTCCCAGATGAAGATGGCCGGTGCCATGTCTACCACTGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CAA 90 bp TTTGAAGTGGAGGCAGACGGTAAGCTTCTTGCAGCCGATGGAGCTTaGGCCATCTTTCCAGAGATTTCAATCCCAATTTCATCAAGAACT +
Preference number: 6 (lower is better)
Translates to: FEVEADGKLLAADGA*AIFPEISIPISSRT
Trigger: AGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAGCTTACCGTCTGCCTCCACTTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS GCA 72 bp AACGTTCTTGTCTTCTGTTTCCGTAGGTGGACAAGCTaGTTAGCTAAAACCCTGCACGCTTCCTTATTACCA +
Preference number: 6 (lower is better)
Translates to: NVLVFCFRRWTS*LAKTLHASLLP
Trigger: TGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAACAGAAGACAAGAACGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CAA 90 bp AAATTCTGCATTGTTTGTAGTGTCTTCTGTGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTTGCAGTGGTAGACATGGCACCGGCC +
Preference number: 6 (lower is better)
Translates to: KFCIVCSVFCGSIFL*TACIVFAVVDMAPA
Trigger: GGCCGGTGCCATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGATCCACAGAAGACACTACAAACAATGCAGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CAA 90 bp TGGAAATTCTGCATTGTTTGTAGTGTCTTCTGTGGATCCATTTTCTaGTTGACTGCTTGCATTGTCTTTGCAGTGGTAGACATGGCACCG +
Preference number: 6 (lower is better)
Translates to: WKFCIVCSVFCGSIF*LTACIVFAVVDMAP
Trigger: CGGTGCCATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGATCCACAGAAGACACTACAAACAATGCAGAATTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CAA 90 bp TTTGGCCATCTTTCCAGAGATTTCAATCCCAATTTCATCAAGAACTaGATTCACGATGTCCTGGCTTTCTTCTTCATCATCAGAGCCATC +
Preference number: 6 (lower is better)
Translates to: FGHLSRDFNPNFIKN*IHDVLAFFFIIRAI
Trigger: GATGGCTCTGATGATGAAGAAGAAAGCCAGGACATCGTGAATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CAA 72 bp TTAGCTAAAACCCTGCACGCTTCCTTATTACCAATCTaGGCCATCTTCTTAATTTCTAACTCCAGCTGTTTC +
Preference number: 6 (lower is better)
Translates to: LAKTLHASLLPI*AIFLISNSSCF
Trigger: GAAACAGCTGGAGTTAGAAATTAAGAAGATGGCCAAGATTGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS CAA 72 bp ATTGTTTGTAGTGTCTTCTGTGGATCCATTTTCTTGTaGACTGCTTGCATTGTCTTTGCAGTGGTAGACATG +
Preference number: 6 (lower is better)
Translates to: IVCSVFCGSIFL*TACIVFAVVDM
Trigger: CATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGATCCACAGAAGACACTACAAACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2
CDS TCA 72 bp TTTCCAGAGATTTCAATCCCAATTTCATCAAGAACTTaGTTCACGATGTCCTGGCTTTCTTCTTCATCATCA +
Preference number: 6 (lower is better)
Translates to: FPEISIPISSRT*FTMSWLSSSSS
Trigger: TGATGATGAAGAAGAAAGCCAGGACATCGTGAATCAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004965.8
ENSMUST00000231259.2