Pregenerated sensors for CHMP1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000109901Ensembl transcript IDs: ENSMUST00000210564.3
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATTACACTGTCCTAGGGCTTGGCCGGACCAAATCAGCGGTTCTTTaGCAATGTTTGGCATGTAATAGGACTGTTGTGTTGACATTCAAC | + |
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Preference number: 1 (lower is better) Translates to: NYTVLGLGRTKSAVL*QCLACNRTVVLTFN Trigger: GTTGAATGTCAACACAACAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAGCCCTAGGACAGTGTAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CCA 90 bp | CAAGCAAACACAAGCTGTTCTCTGTGTTTTGAGGATAGAAGAAAGTaGGAGTTGCTTTGTTTTACACCAGAGGCTATAAAGGAAGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: QANTSCSLCFEDRRK*ELLCFTPEAIKEGS Trigger: GCTGCCTTCCTTTATAGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAGAGAACAGCTTGTGTTTGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR-3UTR CCA 90 bp | TTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATAGGACTGGACCGTTCGGCATTCTaGCACAATTCTGGGACATCT | + |
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Preference number: 2 (lower is better) Translates to: LAGPNQRFFGNVWHVIGLDRSAF*HNSGTS Trigger: AGATGTCCCAGAATTGTGCCAGAATGCCGAACGGTC...CAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 90 bp | GTCCTAGGGCTTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTaGGCATGTAATAGGACTGTTGTGTTGACATTCAACATTATTTTG | + |
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Preference number: 2 (lower is better) Translates to: VLGLGRTKSAVLWQC*ACNRTVVLTFNIIL Trigger: CAAAATAATGTTGAATGTCAACACAACAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAGCCCTAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR-3UTR CCA 90 bp | ATATCTGCTAAAGGACCTTTGAGAGAGGACACTGGGCAGTTAGAAGTGTCCCACATTCTGGCACAATTCTaGGACATCTCTCTAAAACAC | + |
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Preference number: 2 (lower is better) Translates to: ISAKGPLREDTGQLEVSHILAQF*DISLKH Trigger: GTGTTTTAGAGAGATGTCCCAGAATTGTGCCAGAAT...GTGGGACACTTCTAACTGCCCAGTGTCCTCTCTCAAAGGTCCTTTAGCAGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 90 bp | AACACAAGCTGTTCTCTGTGTTTTGAGGATAGAAGAAAGTGGGAGTaGCTTTGTTTTACACCAGAGGCTATAAAGGAAGGCAGCTACTTT | + |
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Preference number: 2 (lower is better) Translates to: NTSCSLCFEDRRKWE*LCFTPEAIKEGSYF Trigger: AAAGTAGCTGCCTTCCTTTATAGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAGAGAACAGCTTGTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 90 bp | TACTTGTTAGTACCCATTCCTTCTCCTTTCATTTTAATGCACCGCTaGCCAGTCTCTGTACCATCAACCACACTAAAAATAACTTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: YLLVPIPSPFILMHR*PVSVPSTTLKITSV Trigger: GACTGAAGTTATTTTTAGTGTGGTTGATGGTACAGAGACTGGCAAGCGGTGCATTAAAATGAAAGGAGAAGGAATGGGTACTAACAAGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 90 bp | AAAGAGTATTTCCCACCGAAGAAGTTGAACAAAGTGTTTACATACTaGTTAGTACCCATTCCTTCTCCTTTCATTTTAATGCACCGCTTG | + |
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Preference number: 2 (lower is better) Translates to: KEYFPPKKLNKVFTY*LVPIPSPFILMHRL Trigger: CAAGCGGTGCATTAAAATGAAAGGAGAAGGAATGGGTACTAACAAGTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAAATACTCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 90 bp | TCAGCGGTTCTTTGGCAATGTTTGGCATGTAATAGGACTGTTGTGTaGACATTCAACATTATTTTGATCAGAAGTCTATTAAGGGTTGAC | + |
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Preference number: 2 (lower is better) Translates to: SAVLWQCLACNRTVV*TFNIILIRSLLRVD Trigger: GTCAACCCTTAATAGACTTCTGATCAAAATAATGTTGAATGTCAACACAACAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR-3UTR CAA 90 bp | TTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATAGGACTGTTCCCACCGAAGAAGTaGAACAAAGTGTTTACATAC | + |
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Preference number: 3 (lower is better) Translates to: LAGPNQRFFGNVWHVIGLFPPKK*NKVFTY Trigger: GTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAA...CAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR-3UTR CAA 90 bp | CTGTGTTTTGAGGATAGAAGAAAGTGGGAGTTGCTTTGTTTTACACCAGAGGCTGTTCTTTGGCAATGTTaGGCATGTAATAGGACTGTT | + |
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Preference number: 3 (lower is better) Translates to: LCFEDRRKWELLCFTPEAVLWQC*ACNRTV Trigger: AACAGTCCTATTACATGCCAAACATTGCCAAAGAAC...AGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR TCA 90 bp | CTAGGGCTTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATGAGGCAGCTCCATGTTaGGATCGAGGCCCGCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LGLGRTKSAVLWQCLACNEAAPC*DRGPPH Trigger: ATGAGGCGGGCCTCGATCTCAACATGGAGCTGCCTC...ATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAGCCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTAAAGGACCTTTGAGAGAGGACACTGGGCAGTTAGAAGTGTCCCACGAACCGGTCTGGCCCTaGGGCAGCTCCATGTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: ISAKGPLREDTGQLEVSHEPVWP*GSSMLR Trigger: TCTCAACATGGAGCTGCCTCAGGGCCAGACCGGTTC...GTGGGACACTTCTAACTGCCCAGTGTCCTCTCTCAAAGGTCCTTTAGCAGATAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | TTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATAGGACTGTTTGCCCATCGTCACTaGAGTCTGGACACGGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LAGPNQRFFGNVWHVIGLFAHRH*SLDTGR Trigger: GCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAA...CAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | TCTGGCACAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAGAGGCCCGCCTCATCTaGCATTTCCTGGAGCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: SGTILGHLSKTQRARQREEARLI*HFLEQH Trigger: ATGCTGCTCCAGGAAATGGCAGATGAGGCGGGCCTC...TTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTGTGCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CCA 90 bp | CTGTGTTTTGAGGATAGAAGAAAGTGGGAGTTGCTTTGTTTTACACCAGAGGCTCCTGGTTCTGGGGAGTaGTCAGCGTCGTCGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LCFEDRRKWELLCFTPEAPGSGE*SASSCC Trigger: GCAGCACGACGACGCTGACCACTCCCCAGAACCAGG...AGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | CTAGGGCTTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATTGGACTTGGTCACTTTaGCCATCGTCACTGCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: LGLGRTKSAVLWQCLACNWTWSL*PSSLQS Trigger: AGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCA...ATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAGCCCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CCA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGAGCAGCATATCCACCTaGTTCTGGGGAGTGGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: QFWDISLKHREHVKGKSRSSIST*FWGVVS Trigger: GCTGACCACTCCCCAGAACCAGGTGGATATGCTGCT...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CCA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGAGGCGGGCCAGTCTCTaGGACAGTTCATCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: QFWDISLKHREHVKGKSRRRASL*DSSSCS Trigger: TGAGCAAGATGAACTGTCCCAGAGACTGGCCCGCCT...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTAAAGGACCTTTGAGAGAGGACACTGGGCAGTTAGAAGTGTCCCACAAGAAGTTCACCCCTTaGTTCTTCTGGCGGATGGCA | + |
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Preference number: 4 (lower is better) Translates to: ISAKGPLREDTGQLEVSHKKFTP*FFWRMA Trigger: TGCCATCCGCCAGAAGAATCAAGGGGTGAACTTCTT...GTGGGACACTTCTAACTGCCCAGTGTCCTCTCTCAAAGGTCCTTTAGCAGATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | TCTGGCACAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAGTGTCTTCCATTTGCTaGGTCTGGACGTCCAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: SGTILGHLSKTQRARQREVSSIC*VWTSRV Trigger: GACTCTGGACGTCCAGACGCAGCAAATGGAAGACAC...TTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTGTGCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | TCTGGCACAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAATGGTCAGCGTCGTCGTaGTGCTCATTGTGTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: SGTILGHLSKTQRARQREWSASS*CSLCLP Trigger: TGGAAGACACAATGAGCAGCACGACGACGCTGACCA...TTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTGTGCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR TCA 90 bp | TCTGGCACAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATGGCATTTTCGGCGTaGATCCTCGCAACTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: SGTILGHLSKTQRARQREMAFSA*ILATSM Trigger: CATGGAAGTTGCGAGGATTCACGCCGAAAATGCCAT...TTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTGTGCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CCA 90 bp | CTGTGTTTTGAGGATAGAAGAAAGTGGGAGTTGCTTTGTTTTACACCAGAGGCTCACCCGCCATGGACTTaGTCACTTTGCCCATCGTCA | + |
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Preference number: 4 (lower is better) Translates to: LCFEDRRKWELLCFTPEAHPPWT*SLCPSS Trigger: TGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTG...AGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR TCA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGCCGCGAATTTCAGGTTaGACAGATGCTTCTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: QFWDISLKHREHVKGKSRPRISG*TDASPC Trigger: ACATGGAGAAGCATCTGTTCAACCTGAAATTCGCGG...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGCACCGCATCCACTCGTaGACTCATTCTCAAGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: QFWDISLKHREHVKGKSRHRIHS*THSQEV Trigger: AACTTCTTGAGAATGAGTGCACGAGTGGATGCGGTG...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGATTGTGTCTTCCATTTaGTGCGTCTGGACGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: QFWDISLKHREHVKGKSRIVSSI*CVWTSR Trigger: TCTGGACGTCCAGACGCAGCAAATGGAAGACACAAT...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | TCTGGCACAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAATCGCAACTTCCATGTTaGCCTTCTGAATGGCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SGTILGHLSKTQRARQRESQLPC*PSEWPF Trigger: AAAAGGCCATTCAGAAGGGCAACATGGAAGTTGCGA...TTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTGTGCCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CCA 90 bp | CTGTGTTTTGAGGATAGAAGAAAGTGGGAGTTGCTTTGTTTTACACCAGAGGCTGATTCTTCTGGCGGATaGCATTTTCGGCGTGAATCC | + |
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Preference number: 4 (lower is better) Translates to: LCFEDRRKWELLCFTPEADSSGG*HFRRES Trigger: GGATTCACGCCGAAAATGCCATCCGCCAGAAGAATC...AGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 72 bp | CTTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTaGGCATGTAATAGGACTGTTGTGTTGACATTCAAC | + |
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Preference number: 4 (lower is better) Translates to: LGRTKSAVLWQC*ACNRTVVLTFN Trigger: GTTGAATGTCAACACAACAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 72 bp | GTGTATATGAGAAGTCACATATCTGCTAAAGGACCTTaGAGAGAGGACACTGGGCAGTTAGAAGTGTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: VYMRSHISAKGP*REDTGQLEVSH Trigger: GTGGGACACTTCTAACTGCCCAGTGTCCTCTCTCAAAGGTCCTTTAGCAGATATGTGACTTCTCATATACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR TCA 90 bp | TTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATAGGACTGTCCATGTTGCCCTTCTaGATGGCCTTTTTAATTTTG | + |
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Preference number: 4 (lower is better) Translates to: LAGPNQRFFGNVWHVIGLSMLPF*MAFLIL Trigger: CAAAATTAAAAAGGCCATTCAGAAGGGCAACATGGA...CAGTCCTATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | GATATACAGAAAGAGTATTTCCCACCGAAGAAGTTGAACAAAGTGTTTACATACTGGGACAGTTCATCTTaGTCAGCCGAAGCCACGCTC | + |
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Preference number: 4 (lower is better) Translates to: DIQKEYFPPKKLNKVFTYWDSSS*SAEATL Trigger: GAGCGTGGCTTCGGCTGAGCAAGATGAACTGTCCCA...GTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAAATACTCTTTCTGTATATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CCA 90 bp | GATATACAGAAAGAGTATTTCCCACCGAAGAAGTTGAACAAAGTGTTTACATACTCCATTTGCTGCGTCTaGACGTCCAGAGTCTCGAAC | + |
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Preference number: 4 (lower is better) Translates to: DIQKEYFPPKKLNKVFTYSICCV*TSRVSN Trigger: GTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGA...GTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAAATACTCTTTCTGTATATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 72 bp | GTACCCATTCCTTCTCCTTTCATTTTAATGCACCGCTaGCCAGTCTCTGTACCATCAACCACACTAAAAATA | + |
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Preference number: 4 (lower is better) Translates to: VPIPSPFILMHR*PVSVPSTTLKI Trigger: TATTTTTAGTGTGGTTGATGGTACAGAGACTGGCAAGCGGTGCATTAAAATGAAAGGAGAAGGAATGGGTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 72 bp | TGTTCTCTGTGTTTTGAGGATAGAAGAAAGTGGGAGTaGCTTTGTTTTACACCAGAGGCTATAAAGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: CSLCFEDRRKWE*LCFTPEAIKEG Trigger: GCCTTCCTTTATAGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAGAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR GCA 90 bp | GATATACAGAAAGAGTATTTCCCACCGAAGAAGTTGAACAAAGTGTTTACATACTCAGCGTCGTCGTGCTaGTCATTGTGTCTTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: DIQKEYFPPKKLNKVFTYSASSC*SLCLPF Trigger: AAATGGAAGACACAATGAGCAGCACGACGACGCTGA...GTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAAATACTCTTTCTGTATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| 3UTR CAA 72 bp | TTCCCACCGAAGAAGTTGAACAAAGTGTTTACATACTaGTTAGTACCCATTCCTTCTCCTTTCATTTTAATG | + |
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Preference number: 4 (lower is better) Translates to: FPPKKLNKVFTY*LVPIPSPFILM Trigger: CATTAAAATGAAAGGAGAAGGAATGGGTACTAACAAGTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS TCA 90 bp | TGCTCAGCCGAAGCCACGCTCGTTCCCACGGAACCGGTCTGGCCCTaGGGCAGCTCCATGTTGAGATCGAGGCCCGCCTCATCTGCCATT | + |
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Preference number: 5 (lower is better) Translates to: CSAEATLVPTEPVWP*GSSMLRSRPASSAI Trigger: AATGGCAGATGAGGCGGGCCTCGATCTCAACATGGAGCTGCCTCAGGGCCAGACCGGTTCCGTGGGAACGAGCGTGGCTTCGGCTGAGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 90 bp | CTTAACCACACCCGCCATGGACTTGGTCACTTTGCCCATCGTCACTaGAGTCTGGACACGGGCCGCCACCGCATCCACTCGTGCACTCAT | + |
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Preference number: 5 (lower is better) Translates to: LNHTRHGLGHFAHRH*SLDTGRHRIHSCTH Trigger: ATGAGTGCACGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGTGGTTAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 90 bp | CTGGCCCTGAGGCAGCTCCATGTTGAGATCGAGGCCCGCCTCATCTaGCATTTCCTGGAGCAGCATATCCACCTGGTTCTGGGGAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: LALRQLHVEIEARLI*HFLEQHIHLVLGSG Trigger: ACCACTCCCCAGAACCAGGTGGATATGCTGCTCCAGGAAATGGCAGATGAGGCGGGCCTCGATCTCAACATGGAGCTGCCTCAGGGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 90 bp | GGAGCAGCATATCCACCTGGTTCTGGGGAGTGGTCAGCGTCGTCGTaGTGCTCATTGTGTCTTCCATTTGCTGCGTCTGGACGTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GAAYPPGSGEWSASS*CSLCLPFAASGRPE Trigger: CTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGACCACTCCCCAGAACCAGGTGGATATGCTGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 90 bp | CATCGTCACTGCAGTCTGGACACGGGCCGCCACCGCATCCACTCGTaGACTCATTCTCAAGAAGTTCACCCCTTGATTCTTCTGGCGGAT | + |
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Preference number: 5 (lower is better) Translates to: HRHCSLDTGRHRIHS*THSQEVHPLILLAD Trigger: ATCCGCCAGAAGAATCAAGGGGTGAACTTCTTGAGAATGAGTGCACGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 90 bp | TGGGGAGTGGTCAGCGTCGTCGTGCTGCTCATTGTGTCTTCCATTTaGTGCGTCTGGACGTCCAGAGTCTCGAACTGGTGTTCGAATTTG | + |
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Preference number: 5 (lower is better) Translates to: WGVVSVVVLLIVSSI*CVWTSRVSNWCSNL Trigger: CAAATTCGAACACCAGTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGACCACTCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CTAGGGCTTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATCAAGAAGTTCACCCCTaGATTCTTCTGGCGGATGGC | + |
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Preference number: 5 (lower is better) Translates to: LGLGRTKSAVLWQCLACNQEVHP*ILLADG Trigger: GCCATCCGCCAGAAGAATCAAGGGGTGAACTTCTTG...ATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAGCCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CTAGGGCTTGGCCGGACCAAATCAGCGGTTCTTTGGCAATGTTTGGCATGTAATCATTGTGTCTTCCATTaGCTGCGTCTGGACGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: LGLGRTKSAVLWQCLACNHCVFH*LRLDVQ Trigger: CTGGACGTCCAGACGCAGCAAATGGAAGACACAATG...ATTACATGCCAAACATTGCCAAAGAACCGCTGATTTGGTCCGGCCAAGCCCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGATGGACTTGGTCACTTaGCCCATCGTCACTGCAGTC | + |
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Preference number: 5 (lower is better) Translates to: QFWDISLKHREHVKGKSRMDLVT*PIVTAV Trigger: GACTGCAGTGACGATGGGCAAAGTGACCAAGTCCAT...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CTGTGTTTTGAGGATAGAAGAAAGTGGGAGTTGCTTTGTTTTACACCAGAGGCTACACCCGCCATGGACTaGGTCACTTTGCCCATCGTC | + |
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Preference number: 5 (lower is better) Translates to: LCFEDRRKWELLCFTPEATPAMD*VTLPIV Trigger: GACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGT...AGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGTCGTCGTGCTGCTCATaGTGTCTTCCATTTGCTGCG | + |
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Preference number: 5 (lower is better) Translates to: QFWDISLKHREHVKGKSRSSCCS*CLPFAA Trigger: CGCAGCAAATGGAAGACACAATGAGCAGCACGACGA...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CTGTGTTTTGAGGATAGAAGAAAGTGGGAGTTGCTTTGTTTTACACCAGAGGCTCTGGGACAGTTCATCTaGCTCAGCCGAAGCCACGCT | + |
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Preference number: 5 (lower is better) Translates to: LCFEDRRKWELLCFTPEALGQFI*LSRSHA Trigger: AGCGTGGCTTCGGCTGAGCAAGATGAACTGTCCCAG...AGCCTCTGGTGTAAAACAAAGCAACTCCCACTTTCTTCTATCCTCAAAACACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | CAATTCTGGGACATCTCTCTAAAACACAGAGAGCACGTCAAAGGGAAATCTCGGGCCGCGAATTTCAGGTaGAACAGATGCTTCTCCATG | + |
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Preference number: 5 (lower is better) Translates to: QFWDISLKHREHVKGKSRAANFR*NRCFSM Trigger: CATGGAGAAGCATCTGTTCAACCTGAAATTCGCGGC...CCGAGATTTCCCTTTGACGTGCTCTCTGTGTTTTAGAGAGATGTCCCAGAATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS-3UTR CAA 90 bp | GATATACAGAAAGAGTATTTCCCACCGAAGAAGTTGAACAAAGTGTTTACATACAACTGGTGTTCGAATTaGTCCATCAAAGCGGAGATC | + |
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Preference number: 5 (lower is better) Translates to: DIQKEYFPPKKLNKVFTYNWCSN*SIKAEI Trigger: GATCTCCGCTTTGATGGACAAATTCGAACACCAGTT...GTATGTAAACACTTTGTTCAACTTCTTCGGTGGGAAATACTCTTTCTGTATATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS TCA 72 bp | GAAGCCACGCTCGTTCCCACGGAACCGGTCTGGCCCTaGGGCAGCTCCATGTTGAGATCGAGGCCCGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: EATLVPTEPVWP*GSSMLRSRPAS Trigger: TGAGGCGGGCCTCGATCTCAACATGGAGCTGCCTCAGGGCCAGACCGGTTCCGTGGGAACGAGCGTGGCTTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 72 bp | ACCCGCCATGGACTTGGTCACTTTGCCCATCGTCACTaGAGTCTGGACACGGGCCGCCACCGCATCCACTCG | + |
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Preference number: 6 (lower is better) Translates to: TRHGLGHFAHRH*SLDTGRHRIHS Trigger: CGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 90 bp | GTCGCGTCCATCGACTTAACCACACCCGCCATGGACTTGGTCACTTaGCCCATCGTCACTGCAGTCTGGACACGGGCCGCCACCGCATCC | + |
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Preference number: 6 (lower is better) Translates to: VASIDLTTPAMDLVT*PIVTAVWTRAATAS Trigger: GGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGTGGTTAAGTCGATGGACGCGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 90 bp | TCAGACTTGATCCCGAAGGCGGGCCAGTCTCTGGGACAGTTCATCTaGCTCAGCCGAAGCCACGCTCGTTCCCACGGAACCGGTCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SDLIPKAGQSLGQFI*LSRSHARSHGTGLA Trigger: GGCCAGACCGGTTCCGTGGGAACGAGCGTGGCTTCGGCTGAGCAAGATGAACTGTCCCAGAGACTGGCCCGCCTTCGGGATCAAGTCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS TCA 72 bp | CCACGGAACCGGTCTGGCCCTGAGGCAGCTCCATGTTaGGATCGAGGCCCGCCTCATCTGCCATTTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: PRNRSGPEAAPC*DRGPPHLPFPG Trigger: TCCAGGAAATGGCAGATGAGGCGGGCCTCGATCTCAACATGGAGCTGCCTCAGGGCCAGACCGGTTCCGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 72 bp | ATCCCGAAGGCGGGCCAGTCTCTGGGACAGTTCATCTaGCTCAGCCGAAGCCACGCTCGTTCCCACGGAACC | + |
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Preference number: 6 (lower is better) Translates to: IPKAGQSLGQFI*LSRSHARSHGT Trigger: GGTTCCGTGGGAACGAGCGTGGCTTCGGCTGAGCAAGATGAACTGTCCCAGAGACTGGCCCGCCTTCGGGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CCA 72 bp | ATGGACTTGGTCACTTTGCCCATCGTCACTGCAGTCTaGACACGGGCCGCCACCGCATCCACTCGTGCACTC | + |
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Preference number: 6 (lower is better) Translates to: MDLVTLPIVTAV*TRAATASTRAL Trigger: GAGTGCACGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 72 bp | ATCGACTTAACCACACCCGCCATGGACTTGGTCACTTaGCCCATCGTCACTGCAGTCTGGACACGGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: IDLTTPAMDLVT*PIVTAVWTRAA Trigger: GGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGTGGTTAAGTCGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 90 bp | CTTTTCAACGTCGCGTCCATCGACTTAACCACACCCGCCATGGACTaGGTCACTTTGCCCATCGTCACTGCAGTCTGGACACGGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: LFNVASIDLTTPAMD*VTLPIVTAVWTRAA Trigger: GGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGTGGTTAAGTCGATGGACGCGACGTTGAAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 72 bp | GGTTCTGGGGAGTGGTCAGCGTCGTCGTGCTGCTCATaGTGTCTTCCATTTGCTGCGTCTGGACGTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GSGEWSASSCCS*CLPFAASGRPE Trigger: CTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGACCACTCCCCAGAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CCA 72 bp | TCTGCCATTTCCTGGAGCAGCATATCCACCTGGTTCTaGGGAGTGGTCAGCGTCGTCGTGCTGCTCATTGTG | + |
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Preference number: 6 (lower is better) Translates to: SAISWSSISTWF*GVVSVVVLLIV Trigger: CACAATGAGCAGCACGACGACGCTGACCACTCCCCAGAACCAGGTGGATATGCTGCTCCAGGAAATGGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 72 bp | GTCGCGTCCATCGACTTAACCACACCCGCCATGGACTaGGTCACTTTGCCCATCGTCACTGCAGTCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: VASIDLTTPAMD*VTLPIVTAVWT Trigger: TGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGTGGTTAAGTCGATGGACGCGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 72 bp | GGTCAGCGTCGTCGTGCTGCTCATTGTGTCTTCCATTaGCTGCGTCTGGACGTCCAGAGTCTCGAACTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GQRRRAAHCVFH*LRLDVQSLELV Trigger: CACCAGTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGACC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 72 bp | TGCAGTCTGGACACGGGCCGCCACCGCATCCACTCGTaGACTCATTCTCAAGAAGTTCACCCCTTGATTCTT | + |
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Preference number: 6 (lower is better) Translates to: CSLDTGRHRIHS*THSQEVHPLIL Trigger: AAGAATCAAGGGGTGAACTTCTTGAGAATGAGTGCACGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS GCA 72 bp | GTCAGCGTCGTCGTGCTGCTCATTGTGTCTTCCATTTaGTGCGTCTGGACGTCCAGAGTCTCGAACTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: VSVVVLLIVSSI*CVWTSRVSNWC Trigger: ACACCAGTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CCA 72 bp | TTTCCTGGAGCAGCATATCCACCTGGTTCTGGGGAGTaGTCAGCGTCGTCGTGCTGCTCATTGTGTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: FPGAAYPPGSGE*SASSCCSLCLP Trigger: TGGAAGACACAATGAGCAGCACGACGACGCTGACCACTCCCCAGAACCAGGTGGATATGCTGCTCCAGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CAA 90 bp | CTGGGGAGTGGTCAGCGTCGTCGTGCTGCTCATTGTGTCTTCCATTaGCTGCGTCTGGACGTCCAGAGTCTCGAACTGGTGTTCGAATTT | + |
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Preference number: 6 (lower is better) Translates to: LGSGQRRRAAHCVFH*LRLDVQSLELVFEF Trigger: AAATTCGAACACCAGTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGACCACTCCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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| CDS CCA 72 bp | TTCTCAAGAAGTTCACCCCTTGATTCTTCTGGCGGATaGCATTTTCGGCGTGAATCCTCGCAACTTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: FSRSSPLDSSGG*HFRRESSQLPC Trigger: ACATGGAAGTTGCGAGGATTCACGCCGAAAATGCCATCCGCCAGAAGAATCAAGGGGTGAACTTCTTGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210564.3 |
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