Pregenerated sensors for CHKB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022617Ensembl transcript IDs: ENSMUST00000023289.13, ENSMUST00000170460.2, ENSMUST00000171666.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTaGGGTTGGATCCTCAGGATGATGGGGAACTCGTCAGCTGGCCCT | + |
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Preference number: 1 (lower is better) Translates to: LPPRSCPGGSRRNLR*GWILRMMGNSSAGP Trigger: AGGGCCAGCTGACGAGTTCCCCATCATCCTGAGGATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGTCTCTGGGGGTCGTCTaGTCTCTGCCCCTCCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: LPLPPRSCPGGSRRNLRWSLGVV*SLPLPP Trigger: TGGAGGGAGGGGCAGAGAGCAGACGACCCCCAGAGA...CCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGACAACAGTCTCACTTTaGGGCACAGCCCCGTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: PPSKVLPRRLQEKLEVGLTTVSL*GTAPSL Trigger: CAGAGACGGGGCTGTGCCTCAAAGTGAGACTGTTGT...CAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| 3UTR-3UTR GCA 90 bp | CTTGAGGTGGGGTTGGATCCTCAGGATGATGGGGAACTCGTCAGCTGGCCCTTCTCTCTGGGGGTCGTCTaGTCTCTGCCCCTCCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: LEVGLDPQDDGELVSWPFSLGVV*SLPLPP Trigger: TGGAGGGAGGGGCAGAGAGCAGACGACCCCCAGAGA...GAAGGGCCAGCTGACGAGTTCCCCATCATCCTGAGGATCCAACCCCACCTCAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR-3UTR GCA 90 bp | TCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCCTCAGGATGGTGGACATCGAAGCCTaGAGGGTGGACCACAGACCC | + |
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Preference number: 2 (lower is better) Translates to: SCPGGSRRNLRWGWILRMVDIEA*RVDHRP Trigger: GGGTCTGTGGTCCACCCTGCAGGCTTCGATGTCCAC...CATCCTGAGGATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR-3UTR TCA 90 bp | CCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATACAACAGTCTCACTTTaGGGCACAGCCCCGTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: PSKVLPRRLQEKLEVGLDTTVSL*GTAPSL Trigger: CAGAGACGGGGCTGTGCCTCAAAGTGAGACTGTTGT...ATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| 3UTR-3UTR CCA 90 bp | CCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCCTCTCGAAGCCTGCAGGGTaGACCACAGACCCCAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: PRSCPGGSRRNLRWGWILSKPAG*TTDPRK Trigger: TTTTCTGGGGTCTGTGGTCCACCCTGCAGGCTTCGA...GAGGATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR-3UTR GCA 90 bp | CCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGCCAGAAAAAGTGAGATaGCAGGGAGTACCGACTGAT | + |
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Preference number: 2 (lower is better) Translates to: PPSKVLPRRLQEKLEVGLPEKVR*QGVPTD Trigger: ATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTGG...CAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR CAA 90 bp | ACTCGTCAGCTGGCCCTTCTGCTGGAAGTAGAACTGGAACCGAGATaGGGCATACTCCAAGTAGCCGAACTCTATAGTGGACATCGAAGC | + |
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Preference number: 2 (lower is better) Translates to: TRQLALLLEVELEPR*GILQVAELYSGHRS Trigger: GCTTCGATGTCCACTATAGAGTTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAGGGCCAGCTGACGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR CCA 72 bp | AGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTaGGGTTGGATCCTCAGGATGATGGGGAACTCGTCA | + |
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Preference number: 3 (lower is better) Translates to: RSCPGGSRRNLR*GWILRMMGNSS Trigger: TGACGAGTTCCCCATCATCCTGAGGATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR TCA 72 bp | CTACAGAGGTCGGCTATTTCAACAACAGTCTCACTTTaGGGCACAGCCCCGTCTCTGGGGGTCGTCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LQRSAISTTVSL*GTAPSLGVVCS Trigger: AGAGCAGACGACCCCCAGAGACGGGGCTGTGCCTCAAAGTGAGACTGTTGTTGAAATAGCCGACCTCTGTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR CCA 90 bp | CTCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGCCTGCAAACCGTCCTTaGGCAGGCCGCCGCCGACAG | + |
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Preference number: 4 (lower is better) Translates to: LSAPPSKVLPRRLQEKLEPANRP*AGRRRQ Trigger: CTGTCGGCGGCGGCCTGCCCAAGGACGGTTTGCAGG...CTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR TCA 90 bp | CCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGGAAGAGCAGGTTGCTaGGGCCTCCGCTCACGGGAC | + |
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Preference number: 4 (lower is better) Translates to: PPSKVLPRRLQEKLEVGLGRAGC*GLRSRD Trigger: GTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCC...CAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CCA 90 bp | GCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGGGCTCCCGACAACACTaGGTCCCGGAGCTCTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: APPSKVLPRRLQEKLEVGGSRQH*VPELLS Trigger: ACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCC...CCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGC 66% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR GCA 90 bp | TCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGGTGGACATCGAAGCCTaGAGGGTGGACCACAGACCC | + |
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Preference number: 4 (lower is better) Translates to: SLPLPPRSCPGGSRRNLRVDIEA*RVDHRP Trigger: GGGTCTGTGGTCCACCCTGCAGGCTTCGATGTCCAC...CCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CCA 90 bp | GCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTCGAAGCCTGCAGGGTaGACCACAGACCCCAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: APPSKVLPRRLQEKLEVGSKPAG*TTDPRK Trigger: TTTTCTGGGGTCTGTGGTCCACCCTGCAGGCTTCGA...CCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CCA 90 bp | CTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGTCTACCAGGTTCATCTaGGGAAGGCTGGTGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: LPLPPRSCPGGSRRNLRWSTRFI*GRLVEG Trigger: GCCTTCCACCAGCCTTCCCCAGATGAACCTGGTAGA...CCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | CTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGAGACCCCAGAAAAAGTaGGATGCCAGGGAGTACCGA | + |
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Preference number: 4 (lower is better) Translates to: LPLPPRSCPGGSRRNLRWRPQKK*DAREYR Trigger: TCGGTACTCCCTGGCATCTCACTTTTTCTGGGGTCT...CCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CCA 90 bp | CTCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGTCTGGGGAAGGCTGGTaGAAGGCAAGTCCTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: LSAPPSKVLPRRLQEKLESGEGW*KASPGS Trigger: AGATCCAGGACTTGCCTTCCACCAGCCTTCCCCAGA...CTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR CCA 90 bp | TCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTCATCTGGGGAAGGCTaGTGGAAGGCAAGTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SLPLPPRSCPGGSRRNLRSSGEG*WKASPG Trigger: TCCAGGACTTGCCTTCCACCAGCCTTCCCCAGATGA...CCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR CCA 90 bp | GCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTCCTGGATGTCATTGTaGCAGAAGACCACTGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: APPSKVLPRRLQEKLEVGSWMSL*QKTTGD Trigger: GTCACCAGTGGTCTTCTGCCACAATGACATCCAGGA...CCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR GCA 90 bp | GCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGCCAGAAAAAGTGAGATaGCAGGGAGTACCGACTGAT | + |
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Preference number: 4 (lower is better) Translates to: APPSKVLPRRLQEKLEVGPEKVR*QGVPTD Trigger: ATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTGG...CCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CCA 90 bp | CCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCCATCCTCGTTGCAATaGCTCCCGACAACACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PSKVLPRRLQEKLEVGLDPSSLQ*LPTTLG Trigger: ACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGG...ATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CCA 90 bp | CCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATTCATCTGGGGAAGGCTaGTGGAAGGCAAGTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: PSKVLPRRLQEKLEVGLDSSGEG*WKASPG Trigger: TCCAGGACTTGCCTTCCACCAGCCTTCCCCAGATGA...ATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | CTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGTGTTCATCTCGTCCTTaGGGCTGTACATCTCTACCA | + |
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Preference number: 4 (lower is better) Translates to: LPLPPRSCPGGSRRNLRWCSSRP*GCTSLP Trigger: TGGTAGAGATGTACAGCCTCAAGGACGAGATGAACA...CCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR CCA 90 bp | TCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCCTCAGGATGTCTACCAGGTTCATCTaGGGAAGGCTGGTGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SCPGGSRRNLRWGWILRMSTRFI*GRLVEG Trigger: GCCTTCCACCAGCCTTCCCCAGATGAACCTGGTAGA...CATCCTGAGGATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS-3UTR GCA 90 bp | CCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGTAGTCCGTGGGTCTTaGTTTGTAGAAAGGCCATTC | + |
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Preference number: 4 (lower is better) Translates to: PPSKVLPRRLQEKLEVGLVVRGS*FVERPF Trigger: GAATGGCCTTTCTACAAAGCAAGACCCACGGACTAC...CAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | TCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGATCACTGTCTGGCTCTaGAAGCAACAAGATGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SLPLPPRSCPGGSRRNLRITVWL*KQQDVS Trigger: GGAAACATCTTGTTGCTTTCAGAGCCAGACAGTGAT...CCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | CTCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGACCCACTCACAAAAATaGTTCCCAATGTCAAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LSAPPSKVLPRRLQEKLETHSQK*FPMSKP Trigger: GGGCTTTGACATTGGGAATCATTTTTGTGAGTGGGT...CTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | CCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCACCCACTCACAAAAATaGTTCCCAATGTCAAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: PPRSCPGGSRRNLRWGWITHSQK*FPMSKP Trigger: GGGCTTTGACATTGGGAATCATTTTTGTGAGTGGGT...GATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | AAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCCTCAGATCACTGTCTGGCTCTaGAAGCAACAAGATGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: KVLPRRLQEKLEVGLDPQITVWL*KQQDVS Trigger: GGAAACATCTTGTTGCTTTCAGAGCCAGACAGTGAT...CTGAGGATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS-3UTR CCA 90 bp | CTTCTGCTGGAAGTAGAACTGGAACCGAGATTGGGCATACTCCAAGTAGCCGAATCTGGGGAAGGCTGGTaGAAGGCAAGTCCTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: LLLEVELEPRLGILQVAESGEGW*KASPGS Trigger: AGATCCAGGACTTGCCTTCCACCAGCCTTCCCCAGA...TTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| 3UTR CAA 72 bp | CTGGCCCTTCTGCTGGAAGTAGAACTGGAACCGAGATaGGGCATACTCCAAGTAGCCGAACTCTATAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LALLLEVELEPR*GILQVAELYSG Trigger: TCCACTATAGAGTTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAGGGCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS-3UTR CCA 90 bp | CTTCTGCTGGAAGTAGAACTGGAACCGAGATTGGGCATACTCCAAGTAGCCGAATCCTGGATGTCATTGTaGCAGAAGACCACTGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LLLEVELEPRLGILQVAESWMSL*QKTTGD Trigger: GTCACCAGTGGTCTTCTGCCACAATGACATCCAGGA...TTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS-3UTR TCA 90 bp | CTTCTGCTGGAAGTAGAACTGGAACCGAGATTGGGCATACTCCAAGTAGCCGAATGTTCATCTCGTCCTTaGGGCTGTACATCTCTACCA | + |
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Preference number: 4 (lower is better) Translates to: LLLEVELEPRLGILQVAECSSRP*GCTSLP Trigger: TGGTAGAGATGTACAGCCTCAAGGACGAGATGAACA...TTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS-3UTR GCA 90 bp | CTTCTGCTGGAAGTAGAACTGGAACCGAGATTGGGCATACTCCAAGTAGCCGAAGTAGTCCGTGGGTCTTaGTTTGTAGAAAGGCCATTC | + |
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Preference number: 4 (lower is better) Translates to: LLLEVELEPRLGILQVAEVVRGS*FVERPF Trigger: GAATGGCCTTTCTACAAAGCAAGACCCACGGACTAC...TTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS CCA 90 bp | GTCACGGGACAGCGAGGAAGCGCGCCGCCGATTGGGGATTGGCTCTaGGCACTTAGCATCCTGCAAACCGTCCTTGGGCAGGCCGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: VTGQRGSAPPIGDWL*ALSILQTVLGQAAA Trigger: GGCGGCGGCCTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCCTCGCTGTCCCGTGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 90 bp | CTGCGCGTCACGGGACAGCGAGGAAGCGCGCCGCCGATTGGGGATTaGCTCTGGGCACTTAGCATCCTGCAAACCGTCCTTGGGCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: LRVTGQRGSAPPIGD*LWALSILQTVLGQA Trigger: GGCCTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCCTCGCTGTCCCGTGACGCGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 90 bp | AGTCGTAGCAGCACCTCCCGGGGCTCCCCGCCCACACTGGGTACGTaGTTCGGTAGTGAGCATCGGAAGAGCAGGTTGCTGAGGCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: SRSSTSRGSPPTLGT*FGSEHRKSRLLRPP Trigger: CGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGAACCACGTACCCAGTGTGGGCGGGGAGCCCCGGGAGGTGCTGCTACGACT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CAA 90 bp | CCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGGATCGAAGCGCGCCGCCGATaGGGGATTGGCTCTGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: PPRSCPGGSRRNLRWGWIEARRR*GIGSGH Trigger: GTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTC...GATCCAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS TCA 90 bp | CACTGGGTACGTGGTTCGGTAGTGAGCATCGGAAGAGCAGGTTGCTaGGGCCTCCGCTCACGGGACAAACGCTCAGCTCCTCCGGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: HWVRGSVVSIGRAGC*GLRSRDKRSAPPAA Trigger: CGCGGCCGGAGGAGCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGAACCACGTACCCAGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CAA 90 bp | CTCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGCATCGGAAGAGCAGGTaGCTGAGGCCTCCGCTCACG | + |
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Preference number: 5 (lower is better) Translates to: LSAPPSKVLPRRLQEKLEHRKSR*LRPPLT Trigger: CGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATG...CTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CAA 90 bp | CTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGCCTTCCTGGATGTCATaGTGGCAGAAGACCACTGGT | + |
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Preference number: 5 (lower is better) Translates to: LPLPPRSCPGGSRRNLRWPSWMS*WQKTTG Trigger: ACCAGTGGTCTTCTGCCACAATGACATCCAGGAAGG...CCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR CAA 90 bp | GCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGGGTAGTCCGTGGGTCTaGCTTTGTAGAAAGGCCATT | + |
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Preference number: 5 (lower is better) Translates to: APPSKVLPRRLQEKLEVGGSPWV*LCRKAI Trigger: AATGGCCTTTCTACAAAGCAAGACCCACGGACTACC...CCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGC 61% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS TCA 90 bp | ATCCTCGTTGCAATGGCTCCCGACAACACTGGGTCCCGGAGCTCTTaGGTTTTCAACGGCCGGCTTGGGAGGTACTGTTCCAAGCGGCCC | + |
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Preference number: 5 (lower is better) Translates to: ILVAMAPDNTGSRSS*VFNGRLGRYCSKRP Trigger: GGGCCGCTTGGAACAGTACCTCCCAAGCCGGCCGTTGAAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS-3UTR CAA 90 bp | TCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGGAACTGGAACCGAGATaGGGCATACTCCAAGTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: SLPLPPRSCPGGSRRNLRELEPR*GILQVA Trigger: GGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTC...CCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 90 bp | ACCATGGAAACGGGCCATCCTCGTTGCAATGGCTCCCGACAACACTaGGTCCCGGAGCTCTTGAGTTTTCAACGGCCGGCTTGGGAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: TMETGHPRCNGSRQH*VPELLSFQRPAWEV Trigger: TACCTCCCAAGCCGGCCGTTGAAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS-3UTR CAA 90 bp | CCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGTGGGGTTGCTGTTCATCTCGTCCTaGAGGCTGTACATCTCTACC | + |
|
Preference number: 5 (lower is better) Translates to: PPSKVLPRRLQEKLEVGLLFISS*RLYIST Trigger: GGTAGAGATGTACAGCCTCAAGGACGAGATGAACAG...CAACCCCACCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS-3UTR CAA 90 bp | TCTCTGCCCCTCCCTCCAAGGTCCTGCCCCGGAGGCTCCAGGAGAAACTTGAGGGGTAGTCCGTGGGTCTaGCTTTGTAGAAAGGCCATT | + |
|
Preference number: 5 (lower is better) Translates to: SLPLPPRSCPGGSRRNLRGSPWV*LCRKAI Trigger: AATGGCCTTTCTACAAAGCAAGACCCACGGACTACC...CCTCAAGTTTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS CCA 90 bp | CCAAACAACCATCGGGGCTCCTTAGTGAAGGGCATCTCCATACCATaGAAACGGGCCATCCTCGTTGCAATGGCTCCCGACAACACTGGG | + |
|
Preference number: 5 (lower is better) Translates to: PNNHRGSLVKGISIP*KRAILVAMAPDNTG Trigger: CCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCCTTCACTAAGGAGCCCCGATGGTTGTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CCA 90 bp | ATCTCTACCAGGTTCATCTGGGGAAGGCTGGTGGAAGGCAAGTCCTaGATCTGCTTCAGGTACCGCTCCATGGTCCCAAACAACCATCGG | + |
|
Preference number: 5 (lower is better) Translates to: ISTRFIWGRLVEGKS*ICFRYRSMVPNNHR Trigger: CCGATGGTTGTTTGGGACCATGGAGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCACCAGCCTTCCCCAGATGAACCTGGTAGAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS GCA 90 bp | CTTAGTGAAGGGCATCTCCATACCATGGAAACGGGCCATCCTCGTTaGAATGGCTCCCGACAACACTGGGTCCCGGAGCTCTTGAGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: LSEGHLHTMETGHPR*NGSRQHWVPELLSF Trigger: AAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCCTTCACTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS TCA 90 bp | GTGGACATCGAAGCCTGCAGGGTGGACCACAGACCCCAGAAAAAGTaGGATGCCAGGGAGTACCGACTGATCTCTAGCAGCAATTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VDIEACRVDHRPQKK*DAREYRLISSSNSS Trigger: AGAAGAATTGCTGCTAGAGATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTGGGGTCTGTGGTCCACCCTGCAGGCTTCGATGTCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS-3UTR CAA 90 bp | CTTCTGCTGGAAGTAGAACTGGAACCGAGATTGGGCATACTCCAAGTAGCCGAACTGTTCATCTCGTCCTaGAGGCTGTACATCTCTACC | + |
|
Preference number: 5 (lower is better) Translates to: LLLEVELEPRLGILQVAELFISS*RLYIST Trigger: GGTAGAGATGTACAGCCTCAAGGACGAGATGAACAG...TTCGGCTACTTGGAGTATGCCCAATCTCGGTTCCAGTTCTACTTCCAGCAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS GCA 90 bp | TTTCTTCTGTTCCTCTTCGGAGAGGATCTCACCCTTCTGAACCTCTaGCAGATAATGGCGAATAAAATGGAGCTGCTGTTCTCTAGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: FLLFLFGEDLTLLNL*QIMANKMELLFSSG Trigger: CCCACTAGAGAACAGCAGCTCCATTTTATTCGCCATTATCTGGCAGAGGTTCAGAAGGGTGAGATCCTCTCCGAAGAGGAACAGAAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS GCA 90 bp | CCTTCTGAACCTCTGCTGTTCTCTAGTGGGGTAGTCCGTGGGTCTTaGTTTGTAGAAAGGCCATTCTTCATAAGTATAATCATAAACCCA | + |
|
Preference number: 5 (lower is better) Translates to: PSEPLLFSSGVVRGS*FVERPFFISIIINP Trigger: TGGGTTTATGATTATACTTATGAAGAATGGCCTTTCTACAAAGCAAGACCCACGGACTACCCCACTAGAGAACAGCAGAGGTTCAGAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS TCA 90 bp | GTACTCAAAATCAACCAACATGAGGTTATCATCACTGTCTGGCTCTaGAAGCAACAAGATGTTTCCTTCCTGGATGTCATTGTGGCAGAA | + |
|
Preference number: 5 (lower is better) Translates to: VLKINQHEVIITVWL*KQQDVSFLDVIVAE Trigger: TTCTGCCACAATGACATCCAGGAAGGAAACATCTTGTTGCTTTCAGAGCCAGACAGTGATGATAACCTCATGTTGGTTGATTTTGAGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 ENSMUST00000171666.8 |
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| CDS TCA 90 bp | CAAAGCCCCTGTAGTTATAACTACTGTACTCAAAATCAACCAACATaGGGTTATCATCACTGTCTGGCTCTGAAAGCAACAAGATGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: QSPCSYNYCTQNQPT*GYHHCLALKATRCF Trigger: GAAACATCTTGTTGCTTTCAGAGCCAGACAGTGATGATAACCTCATGTTGGTTGATTTTGAGTACAGTAGTTATAACTACAGGGGCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 ENSMUST00000171666.8 |
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| CDS CAA 90 bp | GCTCGGCGCTGCGCGTCACGGGACAGCGAGGAAGCGCGCCGCCGATaGGGGATTGGCTCTGGGCACTTAGCATCCTGCAAACCGTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: ARRCASRDSEEARRR*GIGSGHLASCKPSL Trigger: CAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCCTCGCTGTCCCGTGACGCGCAGCGCCGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 72 bp | AGCACCTCCCGGGGCTCCCCGCCCACACTGGGTACGTaGTTCGGTAGTGAGCATCGGAAGAGCAGGTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: STSRGSPPTLGT*FGSEHRKSRLL Trigger: CAGCAACCTGCTCTTCCGATGCTCACTACCGAACCACGTACCCAGTGTGGGCGGGGAGCCCCGGGAGGTGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 72 bp | GTCGTAGCAGCACCTCCCGGGGCTCCCCGCCCACACTaGGTACGTGGTTCGGTAGTGAGCATCGGAAGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: VVAAPPGAPRPH*VRGSVVSIGRA Trigger: TGCTCTTCCGATGCTCACTACCGAACCACGTACCCAGTGTGGGCGGGGAGCCCCGGGAGGTGCTGCTACGAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CAA 72 bp | ATTGGCTCTGGGCACTTAGCATCCTGCAAACCGTCCTaGGGCAGGCCGCCGCCGACAGCCCCTCCTCCGACT | + |
|
Preference number: 6 (lower is better) Translates to: IGSGHLASCKPS*GRPPPTAPPPT Trigger: AGTCGGAGGAGGGGCTGTCGGCGGCGGCCTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 72 bp | CAGCGAGGAAGCGCGCCGCCGATTGGGGATTGGCTCTaGGCACTTAGCATCCTGCAAACCGTCCTTGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: QRGSAPPIGDWL*ALSILQTVLGQ Trigger: CTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCCTCGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CAA 90 bp | CCCACACTGGGTACGTGGTTCGGTAGTGAGCATCGGAAGAGCAGGTaGCTGAGGCCTCCGCTCACGGGACAAACGCTCAGCTCCTCCGGC | + |
|
Preference number: 6 (lower is better) Translates to: PTLGTWFGSEHRKSR*LRPPLTGQTLSSSG Trigger: GCCGGAGGAGCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGAACCACGTACCCAGTGTGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 72 bp | ACGGGACAGCGAGGAAGCGCGCCGCCGATTGGGGATTaGCTCTGGGCACTTAGCATCCTGCAAACCGTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: TGQRGSAPPIGD*LWALSILQTVL Trigger: AAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCCTCGCTGTCCCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS TCA 72 bp | CGTGGTTCGGTAGTGAGCATCGGAAGAGCAGGTTGCTaGGGCCTCCGCTCACGGGACAAACGCTCAGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RGSVVSIGRAGC*GLRSRDKRSAP Trigger: AGGAGCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGAACCACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS GCA 72 bp | GGGCATCTCCATACCATGGAAACGGGCCATCCTCGTTaGAATGGCTCCCGACAACACTGGGTCCCGGAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: GHLHTMETGHPR*NGSRQHWVPEL Trigger: GAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CCA 72 bp | ACGGGCCATCCTCGTTGCAATGGCTCCCGACAACACTaGGTCCCGGAGCTCTTGAGTTTTCAACGGCCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: TGHPRCNGSRQH*VPELLSFQRPA Trigger: AGCCGGCCGTTGAAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CAA 72 bp | GGTACGTGGTTCGGTAGTGAGCATCGGAAGAGCAGGTaGCTGAGGCCTCCGCTCACGGGACAAACGCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: GTWFGSEHRKSR*LRPPLTGQTLS Trigger: GCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGAACCACGTACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CAA 90 bp | CATCCTCGTTGCAATGGCTCCCGACAACACTGGGTCCCGGAGCTCTaGAGTTTTCAACGGCCGGCTTGGGAGGTACTGTTCCAAGCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: HPRCNGSRQHWVPEL*SFQRPAWEVLFQAA Trigger: GGCCGCTTGGAACAGTACCTCCCAAGCCGGCCGTTGAAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS TCA 72 bp | GCAATGGCTCCCGACAACACTGGGTCCCGGAGCTCTTaGGTTTTCAACGGCCGGCTTGGGAGGTACTGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: AMAPDNTGSRSS*VFNGRLGRYCS Trigger: GGAACAGTACCTCCCAAGCCGGCCGTTGAAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CCA 72 bp | CGCTTTCTAATACCAAGGAGTCTACACCCTGCAGGATaGCCCCGTAGAGTCGTAGCAGCACCTCCCGGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: RFLIPRSLHPAG*PRRVVAAPPGA Trigger: AGCCCCGGGAGGTGCTGCTACGACTCTACGGGGCCATCCTGCAGGGTGTAGACTCCTTGGTATTAGAAAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CAA 72 bp | AGGGCATCTCCATACCATGGAAACGGGCCATCCTCGTaGCAATGGCTCCCGACAACACTGGGTCCCGGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RASPYHGNGPSS*QWLPTTLGPGA Trigger: AGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CCA 72 bp | TCTCCATACCATGGAAACGGGCCATCCTCGTTGCAATaGCTCCCGACAACACTGGGTCCCGGAGCTCTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: SPYHGNGPSSLQ*LPTTLGPGALE Trigger: CTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CCA 72 bp | CATCGGGGCTCCTTAGTGAAGGGCATCTCCATACCATaGAAACGGGCCATCCTCGTTGCAATGGCTCCCGAC | + |
|
Preference number: 6 (lower is better) Translates to: HRGSLVKGISIP*KRAILVAMAPD Trigger: GTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCCTTCACTAAGGAGCCCCGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS CAA 72 bp | TGCAATGGCTCCCGACAACACTGGGTCCCGGAGCTCTaGAGTTTTCAACGGCCGGCTTGGGAGGTACTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: CNGSRQHWVPEL*SFQRPAWEVLF Trigger: GAACAGTACCTCCCAAGCCGGCCGTTGAAAACTCAAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 |
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| CDS TCA 72 bp | GAAGCCTGCAGGGTGGACCACAGACCCCAGAAAAAGTaGGATGCCAGGGAGTACCGACTGATCTCTAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: EACRVDHRPQKK*DAREYRLISSS Trigger: GCTGCTAGAGATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTGGGGTCTGTGGTCCACCCTGCAGGCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 72 bp | AGGTTCATCTGGGGAAGGCTGGTGGAAGGCAAGTCCTaGATCTGCTTCAGGTACCGCTCCATGGTCCCAAAC | + |
|
Preference number: 6 (lower is better) Translates to: RFIWGRLVEGKS*ICFRYRSMVPN Trigger: GTTTGGGACCATGGAGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCACCAGCCTTCCCCAGATGAACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS GCA 72 bp | ATCTGGGGAAGGCTGGTGGAAGGCAAGTCCTGGATCTaGTTCAGGTACCGCTCCATGGTCCCAAACAACCAT | + |
|
Preference number: 6 (lower is better) Translates to: IWGRLVEGKSWI*FRYRSMVPNNH Trigger: ATGGTTGTTTGGGACCATGGAGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCACCAGCCTTCCCCAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS CCA 72 bp | TCGTCCTTGAGGCTGTACATCTCTACCAGGTTCATCTaGGGAAGGCGCTCCATGGTCCCAAACAACCATCGG | + |
|
Preference number: 6 (lower is better) Translates to: SSLRLYISTRFI*GRRSMVPNNHR Trigger: CCGATGGTTGTTTGGGACCATGGAGCGCCTTCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170460.2 |
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| CDS CAA 90 bp | GACGGGGTATCGTCTAGTAACTTCCTGAGGCTGTTCATCTCGTCCTaGAGGCTGTACATCTCTACCAGGTTCATCTGGGGAAGGCGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: DGVSSSNFLRLFISS*RLYISTRFIWGRRS Trigger: GGAGCGCCTTCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGAGATGAACAGCCTCAGGAAGTTACTAGACGATACCCCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170460.2 |
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| CDS CCA 72 bp | TGTACATCTCTACCAGGTTCATCTGGGGAAGGCTGGTaGAAGGCAAGTCCTGGATCTGCTTCAGGTACCGCT | + |
|
Preference number: 6 (lower is better) Translates to: CTSLPGSSGEGW*KASPGSASGTA Trigger: AGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCACCAGCCTTCCCCAGATGAACCTGGTAGAGATGTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS CAA 90 bp | GACGGGGTATCGTCTAGTAACTTCCTGAGGCTGTTCATCTCGTCCTaGAGGCTGTACATCTCTACCAGGTTCATCTGGGGAAGGCTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: DGVSSSNFLRLFISS*RLYISTRFIWGRLV Trigger: CACCAGCCTTCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGAGATGAACAGCCTCAGGAAGTTACTAGACGATACCCCGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023289.13 ENSMUST00000171666.8 |
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| CDS CAA 72 bp | TCGTCTAGTAACTTCCTGAGGCTGTTCATCTCGTCCTaGAGGCTGTACATCTCTACCAGGTTCATCTGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SSSNFLRLFISS*RLYISTRFIWG Trigger: TCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGAGATGAACAGCCTCAGGAAGTTACTAGACGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 ENSMUST00000171666.8 |
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| CDS TCA 72 bp | GACCCCAGAAAAAGTGAGATGCCAGGGAGTACCGACTaGTCTCTAGCAGCAATTCTTCTTCCCGTTTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: DPRKSEMPGSTD*SLAAILLPVSS Trigger: AGAAGAAACGGGAAGAAGAATTGCTGCTAGAGATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTGGGGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023289.13 |
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| CDS CCA 72 bp | GAAAGCAACAAGATGTTTCCTTCCTGGATGTCATTGTaGCAGAAGACCACTGGTGACGGGGTATCGTCTAGT | + |
|
Preference number: 6 (lower is better) Translates to: ESNKMFPSWMSL*QKTTGDGVSSS Trigger: ACTAGACGATACCCCGTCACCAGTGGTCTTCTGCCACAATGACATCCAGGAAGGAAACATCTTGTTGCTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 ENSMUST00000171666.8 |
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| CDS GCA 72 bp | CCTCTGCTGTTCTCTAGTGGGGTAGTCCGTGGGTCTTaGTTTGTAGAAAGGCCATTCTTCATAAGTATAATC | + |
|
Preference number: 6 (lower is better) Translates to: PLLFSSGVVRGS*FVERPFFISII Trigger: GATTATACTTATGAAGAATGGCCTTTCTACAAAGCAAGACCCACGGACTACCCCACTAGAGAACAGCAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171666.8 |
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| CDS TCA 72 bp | TGTAGTTATAACTACTGTACTCAAAATCAACCAACATaGGGTTATCATCACTGTCTGGCTCTGAAAGCAACA | + |
|
Preference number: 6 (lower is better) Translates to: CSYNYCTQNQPT*GYHHCLALKAT Trigger: TGTTGCTTTCAGAGCCAGACAGTGATGATAACCTCATGTTGGTTGATTTTGAGTACAGTAGTTATAACTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023289.13 ENSMUST00000170460.2 ENSMUST00000171666.8 |
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