Pregenerated sensors for CHIL6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027902Ensembl transcript IDs: ENSMUST00000029510.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTAAAGTTGGCTGCTCTTaGAGACAGATTCTTCCTGGC | + |
|
Preference number: 2 (lower is better) Translates to: RHHAEPQEKCSRLCPCLGKVGCS*RQILPG Trigger: GCCAGGAAGAATCTGTCTTCAAGAGCAGCCAACTTT...ACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| 3UTR-3UTR CCA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAAAGACAGATTCTTCCTaGCCGTTCTGGAATGGGATT | + |
|
Preference number: 2 (lower is better) Translates to: YFISRSKMVLESVKRHHAKTDSS*PFWNGI Trigger: AATCCCATTCCAGAACGGCCAGGAAGAATCTGTCTT...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| 3UTR CCA 72 bp | CTGCAAAGTTGGCTGCTCTTGAAGACAGATTCTTCCTaGCCGTTCTGGAATGGGATTCCCTTCAGGCTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LQSWLLLKTDSS*PFWNGIPFRLC Trigger: GCAGAGCCTGAAGGGAATCCCATTCCAGAACGGCCAGGAAGAATCTGTCTTCAAGAGCAGCCAACTTTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| 3UTR CCA 72 bp | TGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAAGTTaGCTGCTCTTGAAGACAGATTCTTCCTGGCCGTTC | + |
|
Preference number: 3 (lower is better) Translates to: CSRLCPCLGLQS*LLLKTDSSWPF Trigger: GAACGGCCAGGAAGAATCTGTCTTCAAGAGCAGCCAACTTTGCAGACCTAGACAAGGACATAATCTGCTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| 3UTR-3UTR CAA 90 bp | ATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGAGCCCCAAAGTTGGCTGCTCTaGAAGACAGATTCTTCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: ISRSKMVLESVKRHHAEPQSWLL*KTDSSW Trigger: CCAGGAAGAATCTGTCTTCAAGAGCAGCCAACTTTG...GGGCTCTGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | AGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCCAGTTTGCTTTGTGTaGGGTCCTGGATGGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: RHHAEPQEKCSRLCPCLGPVCFV*GPGWPP Trigger: TGGTGGCCATCCAGGACCCCACACAAAGCAAACTGG...ACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAAGGGGAAATGTGCCCTaGCCACAGAAAGAACCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQRGNVP*PQKEPV Trigger: CACTGGTTCTTTCTGTGGTCAGGGCACATTTCCCCT...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAGCCCAGAATCCAGTTTaGTTTGTGTGGGGTCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQAQNPV*FVWGPG Trigger: TCCAGGACCCCACACAAAGCAAACTGGATTCTGGGC...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAACAACACAGGCTCCAATaGCCCAGAGCTGCTATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQQHRLQ*PRAAIP Trigger: AGGAATAGCAGCTCTGGGGCATTGGAGCCTGTGTTG...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAGCTGAGGCCAGTTGTTaGAGTAACACATCAGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQAEASC*SNTSAG Trigger: ACCAGCTGATGTGTTACTTCAACAACTGGCCTCAGC...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAATAGTCCAAGGACTGTaGCAGTTGGGGGATCTCATA | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQIVQGL*QLGDLI Trigger: TATGAGATCCCCCAACTGTCACAGTCCTTGGACTAT...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | GAAAGTGTCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTGCAGCATTCCAGACCTaGATGGCTCCATTTTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: ESVKRHHAEPQEKCSRLCAAFQT*MAPFFR Trigger: CCTGAAAAATGGAGCCATTCAGGTCTGGAATGCTGC...ACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGACACTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAAAGTCAGGGGAAATGTaGCCTGACCACAGAAAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQKSGEM*PDHRKN Trigger: GTTCTTTCTGTGGTCAGGGCACATTTCCCCTGACTT...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | GAAAGTGTCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTTGGAGTCACTTAGGATaGAGGTGTGTCCATATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ESVKRHHAEPQEKCSRLCWSHLG*RCVHML Trigger: CAGCATATGGACACACCTTCATCCTAAGTGACTCCA...ACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGACACTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAATATTTGCTACTGAGTTaGAACACAGGCTCCAATGCC | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQYLLLS*NTGSNA Trigger: GGCATTGGAGCCTGTGTTGCAACTCAGTAGCAAATA...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | AGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCAATGGTCCAAATCATaGCACCTCCATAGTTGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RHHAEPQEKCSRLCPCLGQWSKS*HLHSCS Trigger: GGAACAACTATGGAGGTGCCATGATTTGGACCATTG...ACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAATTGCAACTTGCACTGTaGACTTTGAGGGTTTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQLQLAL*TLRVFF Trigger: GAAGAAAACCCTCAAAGTGCACAGTGCAAGTTGCAA...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | TCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCCATTCCAGACCTGAATaGCTCCATTTTTCAGGAATG | + |
|
Preference number: 4 (lower is better) Translates to: SRDTMQSPRRNVADYVLVHSRPE*LHFSGM Trigger: CATTCCTGAAAAATGGAGCCATTCAGGTCTGGAATG...GACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | TCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCAGTCATCCATATCAATaGTCCAAATCATGGCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: SRDTMQSPRRNVADYVLVSHPYQ*SKSWHL Trigger: GAGGTGCCATGATTTGGACCATTGATATGGATGACT...GACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAATCCTTTTGGTCATGGTaGAGTTATTTTCCCAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQSFWSW*SYFPKS Trigger: GGATTTGGGAAAATAACTTCACCATGACCAAAAGGA...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | ATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGAGCCCTTGCACTGTGCACTTTaGGGGTTTTCTTCAAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: ISRSKMVLESVKRHHAEPLHCAL*GFSSRW Trigger: CCATCTTGAAGAAAACCCTCAAAGTGCACAGTGCAA...GGGCTCTGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | GAAAGTGTCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTAACAGTCACATTGGCTaGAAGGACAGTTACATTGCA | + |
|
Preference number: 4 (lower is better) Translates to: ESVKRHHAEPQEKCSRLCNSHIG*KDSYIA Trigger: TGCAATGTAACTGTCCTTTCAGCCAATGTGACTGTT...ACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGACACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | TCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCAAACTAACTTGGATATaGTTGCCTTCAGCACTGATC | + |
|
Preference number: 4 (lower is better) Translates to: SRDTMQSPRRNVADYVLVKLTWI*LPSALI Trigger: GATCAGTGCTGAAGGCAACCATATCCAAGTTAGTTT...GACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | GAAAGTGTCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTGGTGTGTCCATATGCTaGAAATCCAACAATGAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: ESVKRHHAEPQEKCSRLCGVSIC*KSNNEL Trigger: AAGCTCATTGTTGGATTTCCAGCATATGGACACACC...ACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGACACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR TCA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAACAGGAACTTTATGATTaGAGTAATGAAAGAATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQQELYD*SNERMA Trigger: CGCCATTCTTTCATTACTTCAATCATAAAGTTCCTG...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | AGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTGCTTTACGTATTTCATaGATCAGGATAGTAAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RHHAEPQEKCSRLCPCLGALRIS*IRIVKR Trigger: TCTCTTTACTATCCTGATGCATGAAATACGTAAAGC...ACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | ATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGAGCCCTACTCCAGTTTCAATTaGAGATTTATAGAGAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: ISRSKMVLESVKRHHAEPYSSFN*RFIERT Trigger: AGTCCTCTCTATAAATCTCCAATTGAAACTGGAGTA...GGGCTCTGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CCA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGGGTTTTCTTCAAGATaGAAGTCAGGGGAAATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YFISRSKMVLESVKRHHAGFSSR*KSGEMC Trigger: GCACATTTCCCCTGACTTCCATCTTGAAGAAAACCC...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR GCA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCACATTTTTCAGGAATGTaGAAATCTCATAATAGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: YFISRSKMVLESVKRHHAHFSGM*KSHNRP Trigger: GGGCCTATTATGAGATTTGCACATTCCTGAAAAATG...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCGAAGGCATAGGGCACTaGCTGAGCAGCATTCCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: SRDTMQSPRRNVADYVLVEGIGH*LSSIPD Trigger: GTCTGGAATGCTGCTCAGCAAGTGCCCTATGCCTTC...GACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAAAGAATCCAGTTTGCTTaGTGTGGGGTCCTGGATGGC | + |
|
Preference number: 5 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQRIQFA*CGVLDG Trigger: GCCATCCAGGACCCCACACAAAGCAAACTGGATTCT...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS TCA 90 bp | CTCCAATGCCCCAGAGCTGCTATTCCTGCTAACAGTCACATTGGCTaGAAGGACAGTTACATTGCAACTTGCACTGTGCACTTTGAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: LQCPRAAIPANSHIG*KDSYIATCTVHFEG Trigger: ACCCTCAAAGTGCACAGTGCAAGTTGCAATGTAACTGTCCTTTCAGCCAATGTGACTGTTAGCAGGAATAGCAGCTCTGGGGCATTGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CCA 90 bp | CATGGAAGGCATAGGGCACTTGCTGAGCAGCATTCCAGACCTGAATaGCTCCATTTTTCAGGAATGTGCAAATCTCATAATAGGCCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: HGRHRALAEQHSRPE*LHFSGMCKSHNRPR Trigger: TCTGGGCCTATTATGAGATTTGCACATTCCTGAAAAATGGAGCCATTCAGGTCTGGAATGCTGCTCAGCAAGTGCCCTATGCCTTCCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS TCA 90 bp | TTTCTCCGGTGTAGCCATCCCAAGATCCATGGAGATCATAGGTCATaGCTTGAATATAGTCCAAGGACTGTGACAGTTGGGGGATCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: FLRCSHPKIHGDHRS*LEYSPRTVTVGGSH Trigger: ATGAGATCCCCCAACTGTCACAGTCCTTGGACTATATTCAAGTCATGACCTATGATCTCCATGGATCTTGGGATGGCTACACCGGAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCGAAAGGACAGTTACATaGCAACTTGCACTGTGCACT | + |
|
Preference number: 5 (lower is better) Translates to: SRDTMQSPRRNVADYVLVERTVT*QLALCT Trigger: AGTGCACAGTGCAAGTTGCAATGTAACTGTCCTTTC...GACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAATTATTTGCTACTGAGTaGCAACACAGGCTCCAATGC | + |
|
Preference number: 5 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQLFATE*QHRLQC Trigger: GCATTGGAGCCTGTGTTGCAACTCAGTAGCAAATAA...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CCA 90 bp | ACAGAGGCAAGGGTCAATGTCTTCATGCTTTATATCTCTCACATCTaGCTGATGCTGAGGCCAGTTGTTGAAGTAACACATCAGCTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: TEARVNVFMLYISHI*LMLRPVVEVTHQLV Trigger: TACCAGCTGATGTGTTACTTCAACAACTGGCCTCAGCATCAGCCAGATGTGAGAGATATAAAGCATGAAGACATTGACCCTTGCCTCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TCAAGAGACACCATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCATGATGAAAACTAACTaGGATATGGTTGCCTTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: SRDTMQSPRRNVADYVLVMMKTN*DMVAFS Trigger: GCTGAAGGCAACCATATCCAAGTTAGTTTTCATCAT...GACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGGTGTCTCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | CATGCAGAGCCCCAGGAGAAATGTAGCAGATTATGTCCTTGTCTAGGTCTGCAACTGGGCTTTTTGTTCTaGCTCACCTCTTTTTCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: HAEPQEKCSRLCPCLGLQLGFLF*LTSFSK Trigger: TTTTGAAAAAGAGGTGAGCAAGAACAAAAAGCCCAG...TTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGGCCCAGAATCCAGTTaGCTTTGTGTGGGGTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: YFISRSKMVLESVKRHHAGPESS*LCVGSW Trigger: CCAGGACCCCACACAAAGCAAACTGGATTCTGGGCC...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | ATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGAGCCCGATCTCATAGCCAAATaGGATTGTAGAGATAACACC | + |
|
Preference number: 5 (lower is better) Translates to: ISRSKMVLESVKRHHAEPDLIAK*DCRDNT Trigger: GGTGTTATCTCTACAATCCAATTTGGCTATGAGATC...GGGCTCTGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CCA 90 bp | CATAATGTATTTTATGTTGTGAAAGGCCTTTACTCCAGTTTCAATTaGAGATTTATAGAGAGGACTGTTTTCTCCGGTGTAGCCATCCCA | + |
|
Preference number: 5 (lower is better) Translates to: HNVFYVVKGLYSSFN*RFIERTVFSGVAIP Trigger: TGGGATGGCTACACCGGAGAAAACAGTCCTCTCTATAAATCTCCAATTGAAACTGGAGTAAAGGCCTTTCACAACATAAAATACATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAGCATTCAGAAGGAGGTaGAGACCCATGATGAAAACT | + |
|
Preference number: 5 (lower is better) Translates to: YFISRSKMVLESVKRHHAAFRRR*RPMMKT Trigger: AGTTTTCATCATGGGTCTCAACCTCCTTCTGAATGC...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCAATCAGCCTGGGCTTTTaGTTCTTGCTCACCTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: YFISRSKMVLESVKRHHAISLGF*FLLTSF Trigger: AAAAGAGGTGAGCAAGAACAAAAAGCCCAGGCTGAT...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS-3UTR CAA 90 bp | TATTTTATTAGTAGAAGTAAGATGGTCCTAGAAAGTGTCAAGAGACACCATGCACTGCTAACAGTCACATaGGCTGAAAGGACAGTTACA | + |
|
Preference number: 5 (lower is better) Translates to: YFISRSKMVLESVKRHHALLTVT*AERTVT Trigger: TGTAACTGTCCTTTCAGCCAATGTGACTGTTAGCAG...TGCATGGTGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CCA 72 bp | GCCCAGAATCCAGTTTGCTTTGTGTGGGGTCCTGGATaGCCACCACGATTGCTAGGGGCACCAATTTCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: AQNPVCFVWGPG*PPRLLGAPISV Trigger: AACAGAAATTGGTGCCCCTAGCAATCGTGGTGGCCATCCAGGACCCCACACAAAGCAAACTGGATTCTGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS TCA 72 bp | CCCAGAGCTGCTATTCCTGCTAACAGTCACATTGGCTaGAAGGACAGTTACATTGCAACTTGCACTGTGCAC | + |
|
Preference number: 6 (lower is better) Translates to: PRAAIPANSHIG*KDSYIATCTVH Trigger: GTGCACAGTGCAAGTTGCAATGTAACTGTCCTTTCAGCCAATGTGACTGTTAGCAGGAATAGCAGCTCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CAA 72 bp | GAATGTGCAAATCTCATAATAGGCCCAGAATCCAGTTaGCTTTGTGTGGGGTCCTGGATGGCCACCACGATT | + |
|
Preference number: 6 (lower is better) Translates to: ECANLIIGPESS*LCVGSWMATTI Trigger: AATCGTGGTGGCCATCCAGGACCCCACACAAAGCAAACTGGATTCTGGGCCTATTATGAGATTTGCACATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS GCA 72 bp | TTGGCTGAAAGGACAGTTACATTGCAACTTGCACTGTaGACTTTGAGGGTTTTCTTCAAGATGGAAGTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LAERTVTLQLAL*TLRVFFKMEVR Trigger: CCTGACTTCCATCTTGAAGAAAACCCTCAAAGTGCACAGTGCAAGTTGCAATGTAACTGTCCTTTCAGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CCA 72 bp | AGGGTCAATGTCTTCATGCTTTATATCTCTCACATCTaGCTGATGCTGAGGCCAGTTGTTGAAGTAACACAT | + |
|
Preference number: 6 (lower is better) Translates to: RVNVFMLYISHI*LMLRPVVEVTH Trigger: ATGTGTTACTTCAACAACTGGCCTCAGCATCAGCCAGATGTGAGAGATATAAAGCATGAAGACATTGACCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||
| CDS CAA 72 bp | ATTTTATGTTGTGAAAGGCCTTTACTCCAGTTTCAATaGGAGATTTATAGAGAGGACTGTTTTCTCCGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: ILCCERPLLQFQ*EIYREDCFLRC Trigger: ACACCGGAGAAAACAGTCCTCTCTATAAATCTCCAATTGAAACTGGAGTAAAGGCCTTTCACAACATAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029510.9 |
||