RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHIL5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043873

Ensembl transcript IDs: ENSMUST00000054973.8, ENSMUST00000066537.10, ENSMUST00000200146.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATaGCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATT +
Preference number: 1 (lower is better)
Translates to: RRLFWALEKLIGTSS*LVSSYQIILRRGSI
Trigger: AATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR-3UTR CCA 90 bp GCTTCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAGGAGAGGATCCATTTaGAAGTTGTGTTGGAATAAG +
Preference number: 2 (lower is better)
Translates to: ASQGAKETLLGPGKTYRDRRGSI*KLCWNK
Trigger: CTTATTCCAACACAACTTCCAAATGGATCCTCTCCT...GTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR-3UTR GCA 90 bp ATTGCTTTAGAGCCTCTCTTCCAGTTCCTATTCCCACTGTATAGAGGAGCATTTCTGAAACAGAGGCCATaGAACTTGTGCTGTACACTA +
Preference number: 2 (lower is better)
Translates to: IALEPLFQFLFPLYRGAFLKQRP*NLCCTL
Trigger: TAGTGTACAGCACAAGTTGCATGGCCTCTGTTTCAG...AAATGCTCCTCTATACAGTGGGAATAGGAACTGGAAGAGAGGCTCTAAAGCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR-3UTR CCA 90 bp AAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCAATTTGGAAGTTGTGTTaGAATAAGATTCCATTTGGG +
Preference number: 2 (lower is better)
Translates to: KEQRRLFWALEKLIGTSSIWKLC*NKIPFG
Trigger: CCCAAATGGAATCTTATTCCAACACAACTTCCAAAT...TGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR-3UTR TCA 90 bp AAACTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGTTCTCTTGGCACAGGTaGCACAGAATCCATTGCTTT +
Preference number: 2 (lower is better)
Translates to: KLIGTSSCLVSSYQIILRFSWHR*HRIHCF
Trigger: AAAGCAATGGATTCTGTGTCACCTGTGCCAAGAGAA...CCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR CAA 90 bp CTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTaGAGGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCA +
Preference number: 2 (lower is better)
Translates to: LIGTSSCLVSSYQII*RRGSIWKLCWNKIP
Trigger: TGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR-3UTR CCA 90 bp AAACTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGATTTGGAAGTTGTGTTaGAATAAGATTCCATTTGGG +
Preference number: 2 (lower is better)
Translates to: KLIGTSSCLVSSYQIILRIWKLC*NKIPFG
Trigger: CCCAAATGGAATCTTATTCCAACACAACTTCCAAAT...CCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR GCA 72 bp CATTCAGGAAGGAGCAAATCTCATAATAGGCCCAGGTaGCAGACTCTTCTGTGTAGGGCCCTAGTGTACCAG +
Preference number: 3 (lower is better)
Translates to: HSGRSKSHNRPR*QTLLCRALVYQ
Trigger: CTGGTACACTAGGGCCCTACACAGAAGAGTCTGGCACCTGGGCCTATTATGAGATTTGCTCCTTCCTGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR CCA 72 bp CATAGGGTACTTCCTGCGCAGAATCCCAGGCTTCAGTaGCTCCATCATTCAGGAAGGAGCAAATCTCATAAT +
Preference number: 3 (lower is better)
Translates to: HRVLPAQNPRLQ*LHHSGRSKSHN
Trigger: ATTATGAGATTTGCTCCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATTCTGCGCAGGAAGTACCCTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR-3UTR CAA 90 bp GTGCCAGAAGGCATTTTGATTATTCTCTTGGCACAGGTGACACAGAATCCATTGCAGAGGCCATGCAACTaGTGCTGTACACTAAGAGGG +
Preference number: 3 (lower is better)
Translates to: VPEGILIILLAQVTQNPLQRPCN*CCTLRG
Trigger: CCCTCTTAGTGTACAGCACAAGTTGCATGGCCTCTG...CAATGGATTCTGTGTCACCTGTGCCAAGAGAATAATCAAAATGCCTTCTGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR TCA 72 bp TTCCTATTCCCACTGTATAGAGGAGCATTTACTTGCTaGAGATCTGAAACAGAGGCCATGCAACTTGTGCTG +
Preference number: 3 (lower is better)
Translates to: FLFPLYRGAFTC*RSETEAMQLVL
Trigger: CAGCACAAGTTGCATGGCCTCTGTTTCAGATCTTCAGCAAGTAAATGCTCCTCTATACAGTGGGAATAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR GCA 72 bp GAGCATTTACTTGCTGAAGATCTGAAACAGAGGCCATaGAACTTGTGCTGTACACTAAGAGGGCATTCTTCA +
Preference number: 3 (lower is better)
Translates to: EHLLAEDLKQRP*NLCCTLRGHSS
Trigger: TGAAGAATGCCCTCTTAGTGTACAGCACAAGTTGCATGGCCTCTGTTTCAGATCTTCAGCAAGTAAATGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR GCA 72 bp TTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATaGCTAGTTTCTTCATACCAGATTATTTTGAGGAGA +
Preference number: 3 (lower is better)
Translates to: FWALEKLIGTSS*LVSSYQIILRR
Trigger: TCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR-3UTR CAA 90 bp AGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTGGTCATACCAGATTATTTaGAGGAGAGGATCCATTTGG +
Preference number: 3 (lower is better)
Translates to: SSCLVSSYQIILRRGSIWSYQII*RRGSIW
Trigger: CCAAATGGATCCTCTCCTCAAAATAATCTGGTATGA...CCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR CCA 72 bp TCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTaGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTG +
Preference number: 3 (lower is better)
Translates to: SSYQIILRRGSI*KLCWNKIPFGL
Trigger: CAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
CDS-3UTR GCA 90 bp ACTTCCTGCGCAGAATCCCAGGCTTCAGTGGCTCCATCATTCAGGAAGGAGCAACGAGACCCAGGGAACTaGCAGTCCAGGTTCAGTCCA +
Preference number: 4 (lower is better)
Translates to: TSCAESQASVAPSFRKEQRDPGN*QSRFSP
Trigger: TGGACTGAACCTGGACTGGCAGTTCCCTGGGTCTCG...TTGCTCCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATTCTGCGCAGGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
CDS-3UTR TCA 90 bp TCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTGGAGACCATGGCACTaGACGGGGCAGGTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: SQGAKETLLGPGKTYRDKWRPWH*TGQVQS
Trigger: ACTTTGGACCTGCCCCGTTCAGTGCCATGGTCTCCA...CTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
CDS-3UTR GCA 90 bp GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCCGAGACCCAGGGAACTaGCAGTCCAGGTTCAGTCCA +
Preference number: 4 (lower is better)
Translates to: GEDPFGSCVGIRFHLGCARDPGN*QSRFSP
Trigger: TGGACTGAACCTGGACTGGCAGTTCCCTGGGTCTCG...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
CDS-3UTR TCA 90 bp ATTGCTTTAGAGCCTCTCTTCCAGTTCCTATTCCCACTGTATAGAGGAGCATTTTGGAGACCATGGCACTaGACGGGGCAGGTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: IALEPLFQFLFPLYRGAFWRPWH*TGQVQS
Trigger: ACTTTGGACCTGCCCCGTTCAGTGCCATGGTCTCCA...AAATGCTCCTCTATACAGTGGGAATAGGAACTGGAAGAGAGGCTCTAAAGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
CDS-3UTR GCA 90 bp TCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGAGGCCATGCAACTTGTaGTGTACACTAAGAGGGCAT +
Preference number: 4 (lower is better)
Translates to: SQGAKETLLGPGKTYRDKRPCNL*CTLRGH
Trigger: ATGCCCTCTTAGTGTACAGCACAAGTTGCATGGCCT...CTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR TCA 90 bp GAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATGCCTAGTTTCCATTCCAGTAGGTCATaGTGTAATCCTGTACCAGGA +
Preference number: 4 (lower is better)
Translates to: ETLLGPGKTYRDKFMPSFHSSRS*CNPVPG
Trigger: TCCTGGTACAGGATTACATCATGACCTACTGGAATG...GAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR TCA 90 bp GATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGGGAGCATTTACTTGCTaGAGATCTGAAACAGAGGCC +
Preference number: 4 (lower is better)
Translates to: DPFGSCVGIRFHLGCARRGAFTC*RSETEA
Trigger: GGCCTCTGTTTCAGATCTTCAGCAAGTAAATGCTCC...CCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR TCA 90 bp GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCTTCTCTTGGCACAGGTaGCACAGAATCCATTGCTTT +
Preference number: 4 (lower is better)
Translates to: GEDPFGSCVGIRFHLGCAFSWHR*HRIHCF
Trigger: AAAGCAATGGATTCTGTGTCACCTGTGCCAAGAGAA...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR GCA 90 bp AGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATAATAGGCCCAGGTaGCAGACTCTTCTGTGTAGG +
Preference number: 4 (lower is better)
Translates to: RDKFMPSFFIPDYFEERIHNRPR*QTLLCR
Trigger: CCTACACAGAAGAGTCTGGCACCTGGGCCTATTATG...GATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR GCA 90 bp GATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGCTGAAACAGAGGCCATaGAACTTGTGCTGTACACTA +
Preference number: 4 (lower is better)
Translates to: DPFGSCVGIRFHLGCARRLKQRP*NLCCTL
Trigger: TAGTGTACAGCACAAGTTGCATGGCCTCTGTTTCAG...CCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CCA 90 bp AGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCAATCCCAGGCTTCAGTaGCTCCATCATTCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: RDKFMPSFFIPDYFEERINPRLQ*LHHSGR
Trigger: CCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATT...GATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
3UTR CAA 72 bp TCCATATCAAGGGTCCATAACATGGCACCTCCCAGGTaGTTCTGTTTAAGCCATTCAGCCTTGATTCGAAAA +
Preference number: 4 (lower is better)
Translates to: SISRVHNMAPPR*FCLSHSALIRK
Trigger: TTTTCGAATCAAGGCTGAATGGCTTAAACAGAACAACCTGGGAGGTGCCATGTTATGGACCCTTGATATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
3UTR CAA 72 bp TACCAGATTATTTTGAGGAGAGGATCCATTTGGAAGTaGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAG +
Preference number: 4 (lower is better)
Translates to: YQIILRRGSIWK*CWNKIPFGLCQ
Trigger: CTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
3UTR CAA 72 bp ACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTaGAGGAGAGGATCCATTTGGAAGTTGTGTTGGAAT +
Preference number: 4 (lower is better)
Translates to: TSSCLVSSYQII*RRGSIWKLCWN
Trigger: ATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp TCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGCCCAGTATAGCCATCTaGGGAGCCATGGAGATTGTA +
Preference number: 5 (lower is better)
Translates to: SQGAKETLLGPGKTYRDKPSIAI*GAMEIV
Trigger: TACAATCTCCATGGCTCCCAAGATGGCTATACTGGG...CTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054973.8
CDS-3UTR CAA 90 bp AGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATGCCTAGTTTCTGGAGCACTTATTCCATaGTTGGAGGGGTCACTCAGG +
Preference number: 5 (lower is better)
Translates to: RLFWALEKLIGTSSCLVSGALIP*LEGSLR
Trigger: CCTGAGTGACCCCTCCAACAATGGAATAAGTGCTCC...AGAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp AAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATGCCTAGTAGATGTCAGAGGGAATaGGCCCTGGTTGCAGAAAGA +
Preference number: 5 (lower is better)
Translates to: KETLLGPGKTYRDKFMPSRCQRE*ALVAER
Trigger: TCTTTCTGCAACCAGGGCCAATTCCCTCTGACATCT...ACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp GATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGCAGAGGCCATGCAACTaGTGCTGTACACTAAGAGGG +
Preference number: 5 (lower is better)
Translates to: DPFGSCVGIRFHLGCARRQRPCN*CCTLRG
Trigger: CCCTCTTAGTGTACAGCACAAGTTGCATGGCCTCTG...CCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCATGGCACCTCCCAGGTaGTTCTGTTTAAGCCATTCA +
Preference number: 5 (lower is better)
Translates to: GEDPFGSCVGIRFHLGCAMAPPR*FCLSHS
Trigger: TGAATGGCTTAAACAGAACAACCTGGGAGGTGCCAT...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp ATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGCATTTGGGAATTGGCCCTGGTaGCAGAAAGAGCCAGTGAAG +
Preference number: 5 (lower is better)
Translates to: IWKLCWNKIPFGLCQKAFGNWPW*QKEPVK
Trigger: CTTCACTGGCTCTTTCTGCAACCAGGGCCAATTCCC...AAATGCCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS GCA 90 bp AGTCCCGTCCTCCAATGGCCAGGAGGGTTTTCAGCTGTACGTTTCTaGTTTTTAGAGTATTTAAGGCTTGGTAGTCAGTCAAGTCATTCA +
Preference number: 5 (lower is better)
Translates to: SPVLQWPGGFSAVRF*FLEYLRLGSQSSHS
Trigger: TGAATGACTTGACTGACTACCAAGCCTTAAATACTCTAAAAAGCAGAAACGTACAGCTGAAAACCCTCCTGGCCATTGGAGGACGGGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200146.2
CDS CCA 90 bp ACACAGGCAGGGGTCAATATCAGCAGGATTGAAACTTCCCAATTTTaGTCTGTTCTGGGCTACATTATTATAGTAGCACATCAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: TQAGVNISRIETSQF*SVLGYIIIVAHQLV
Trigger: TACCAGCTGATGTGCTACTATAATAATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGACCCCTGCCTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200146.2
CDS-3UTR CAA 90 bp GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCTTAAGCCATTCAGCCTaGATTCGAAAACTCTTGACA +
Preference number: 5 (lower is better)
Translates to: GEDPFGSCVGIRFHLGCALSHSA*IRKLLT
Trigger: TGTCAAGAGTTTTCGAATCAAGGCTGAATGGCTTAA...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp CCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTGGAAGTTGTGATGAAAGTCTGTTGGTaGTGTGGAGTGGAGACCATG +
Preference number: 5 (lower is better)
Translates to: PSFFIPDYFEERIHLEVVMKVCW*CGVETM
Trigger: CATGGTCTCCACTCCACACAACCAACAGACTTTCAT...CACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp AAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTGACTCAGGGTGAAGGTTaGTCCATATGCTGGGAATCC +
Preference number: 5 (lower is better)
Translates to: KFMPSFFIPDYFEERIHLTQGEG*SICWES
Trigger: GGATTCCCAGCATATGGACAAACCTTCACCCTGAGT...CAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066537.10
CDS-3UTR CAA 90 bp CTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAATGAAAGTCTGTTGGTaGTGTGGAGTGGAGACCATG +
Preference number: 5 (lower is better)
Translates to: LIGTSSCLVSSYQIILRRMKVCW*CGVETM
Trigger: CATGGTCTCCACTCCACACAACCAACAGACTTTCAT...TCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054973.8
ENSMUST00000066537.10
CDS TCA 72 bp GGTGAGTACACAGGCAGGGGTCAATATCAGCAGGATTaGAACTTCCCAATTTTGGTCTGTTCTGGGCTACAT +
Preference number: 6 (lower is better)
Translates to: GEYTGRGQYQQD*NFPILVCSGLH
Trigger: ATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGACCCCTGCCTGTGTACTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200146.2
CDS GCA 72 bp CTCCAATGGCCAGGAGGGTTTTCAGCTGTACGTTTCTaGTTTTTAGAGTATTTAAGGCTTGGTAGTCAGTCA +
Preference number: 6 (lower is better)
Translates to: LQWPGGFSAVRF*FLEYLRLGSQS
Trigger: TGACTGACTACCAAGCCTTAAATACTCTAAAAAGCAGAAACGTACAGCTGAAAACCCTCCTGGCCATTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200146.2
CDS CCA 72 bp GGGGTCAATATCAGCAGGATTGAAACTTCCCAATTTTaGTCTGTTCTGGGCTACATTATTATAGTAGCACAT +
Preference number: 6 (lower is better)
Translates to: GVNISRIETSQF*SVLGYIIIVAH
Trigger: ATGTGCTACTATAATAATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGACCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200146.2