Pregenerated sensors for CHIL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043873Ensembl transcript IDs: ENSMUST00000054973.8, ENSMUST00000066537.10, ENSMUST00000200146.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATaGCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATT | + |
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Preference number: 1 (lower is better) Translates to: RRLFWALEKLIGTSS*LVSSYQIILRRGSI Trigger: AATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR-3UTR CCA 90 bp | GCTTCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAGGAGAGGATCCATTTaGAAGTTGTGTTGGAATAAG | + |
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Preference number: 2 (lower is better) Translates to: ASQGAKETLLGPGKTYRDRRGSI*KLCWNK Trigger: CTTATTCCAACACAACTTCCAAATGGATCCTCTCCT...GTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR-3UTR GCA 90 bp | ATTGCTTTAGAGCCTCTCTTCCAGTTCCTATTCCCACTGTATAGAGGAGCATTTCTGAAACAGAGGCCATaGAACTTGTGCTGTACACTA | + |
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Preference number: 2 (lower is better) Translates to: IALEPLFQFLFPLYRGAFLKQRP*NLCCTL Trigger: TAGTGTACAGCACAAGTTGCATGGCCTCTGTTTCAG...AAATGCTCCTCTATACAGTGGGAATAGGAACTGGAAGAGAGGCTCTAAAGCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCAATTTGGAAGTTGTGTTaGAATAAGATTCCATTTGGG | + |
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Preference number: 2 (lower is better) Translates to: KEQRRLFWALEKLIGTSSIWKLC*NKIPFG Trigger: CCCAAATGGAATCTTATTCCAACACAACTTCCAAAT...TGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR-3UTR TCA 90 bp | AAACTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGTTCTCTTGGCACAGGTaGCACAGAATCCATTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: KLIGTSSCLVSSYQIILRFSWHR*HRIHCF Trigger: AAAGCAATGGATTCTGTGTCACCTGTGCCAAGAGAA...CCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR CAA 90 bp | CTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTaGAGGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCA | + |
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Preference number: 2 (lower is better) Translates to: LIGTSSCLVSSYQII*RRGSIWKLCWNKIP Trigger: TGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR-3UTR CCA 90 bp | AAACTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGATTTGGAAGTTGTGTTaGAATAAGATTCCATTTGGG | + |
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Preference number: 2 (lower is better) Translates to: KLIGTSSCLVSSYQIILRIWKLC*NKIPFG Trigger: CCCAAATGGAATCTTATTCCAACACAACTTCCAAAT...CCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR GCA 72 bp | CATTCAGGAAGGAGCAAATCTCATAATAGGCCCAGGTaGCAGACTCTTCTGTGTAGGGCCCTAGTGTACCAG | + |
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Preference number: 3 (lower is better) Translates to: HSGRSKSHNRPR*QTLLCRALVYQ Trigger: CTGGTACACTAGGGCCCTACACAGAAGAGTCTGGCACCTGGGCCTATTATGAGATTTGCTCCTTCCTGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR CCA 72 bp | CATAGGGTACTTCCTGCGCAGAATCCCAGGCTTCAGTaGCTCCATCATTCAGGAAGGAGCAAATCTCATAAT | + |
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Preference number: 3 (lower is better) Translates to: HRVLPAQNPRLQ*LHHSGRSKSHN Trigger: ATTATGAGATTTGCTCCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATTCTGCGCAGGAAGTACCCTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR-3UTR CAA 90 bp | GTGCCAGAAGGCATTTTGATTATTCTCTTGGCACAGGTGACACAGAATCCATTGCAGAGGCCATGCAACTaGTGCTGTACACTAAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: VPEGILIILLAQVTQNPLQRPCN*CCTLRG Trigger: CCCTCTTAGTGTACAGCACAAGTTGCATGGCCTCTG...CAATGGATTCTGTGTCACCTGTGCCAAGAGAATAATCAAAATGCCTTCTGGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR TCA 72 bp | TTCCTATTCCCACTGTATAGAGGAGCATTTACTTGCTaGAGATCTGAAACAGAGGCCATGCAACTTGTGCTG | + |
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Preference number: 3 (lower is better) Translates to: FLFPLYRGAFTC*RSETEAMQLVL Trigger: CAGCACAAGTTGCATGGCCTCTGTTTCAGATCTTCAGCAAGTAAATGCTCCTCTATACAGTGGGAATAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR GCA 72 bp | GAGCATTTACTTGCTGAAGATCTGAAACAGAGGCCATaGAACTTGTGCTGTACACTAAGAGGGCATTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: EHLLAEDLKQRP*NLCCTLRGHSS Trigger: TGAAGAATGCCCTCTTAGTGTACAGCACAAGTTGCATGGCCTCTGTTTCAGATCTTCAGCAAGTAAATGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR GCA 72 bp | TTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATaGCTAGTTTCTTCATACCAGATTATTTTGAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: FWALEKLIGTSS*LVSSYQIILRR Trigger: TCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR-3UTR CAA 90 bp | AGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTGGTCATACCAGATTATTTaGAGGAGAGGATCCATTTGG | + |
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Preference number: 3 (lower is better) Translates to: SSCLVSSYQIILRRGSIWSYQII*RRGSIW Trigger: CCAAATGGATCCTCTCCTCAAAATAATCTGGTATGA...CCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR CCA 72 bp | TCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTaGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: SSYQIILRRGSI*KLCWNKIPFGL Trigger: CAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| CDS-3UTR GCA 90 bp | ACTTCCTGCGCAGAATCCCAGGCTTCAGTGGCTCCATCATTCAGGAAGGAGCAACGAGACCCAGGGAACTaGCAGTCCAGGTTCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: TSCAESQASVAPSFRKEQRDPGN*QSRFSP Trigger: TGGACTGAACCTGGACTGGCAGTTCCCTGGGTCTCG...TTGCTCCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATTCTGCGCAGGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| CDS-3UTR TCA 90 bp | TCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTGGAGACCATGGCACTaGACGGGGCAGGTCCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: SQGAKETLLGPGKTYRDKWRPWH*TGQVQS Trigger: ACTTTGGACCTGCCCCGTTCAGTGCCATGGTCTCCA...CTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| CDS-3UTR GCA 90 bp | GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCCGAGACCCAGGGAACTaGCAGTCCAGGTTCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: GEDPFGSCVGIRFHLGCARDPGN*QSRFSP Trigger: TGGACTGAACCTGGACTGGCAGTTCCCTGGGTCTCG...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| CDS-3UTR TCA 90 bp | ATTGCTTTAGAGCCTCTCTTCCAGTTCCTATTCCCACTGTATAGAGGAGCATTTTGGAGACCATGGCACTaGACGGGGCAGGTCCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: IALEPLFQFLFPLYRGAFWRPWH*TGQVQS Trigger: ACTTTGGACCTGCCCCGTTCAGTGCCATGGTCTCCA...AAATGCTCCTCTATACAGTGGGAATAGGAACTGGAAGAGAGGCTCTAAAGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| CDS-3UTR GCA 90 bp | TCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGAGGCCATGCAACTTGTaGTGTACACTAAGAGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SQGAKETLLGPGKTYRDKRPCNL*CTLRGH Trigger: ATGCCCTCTTAGTGTACAGCACAAGTTGCATGGCCT...CTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR TCA 90 bp | GAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATGCCTAGTTTCCATTCCAGTAGGTCATaGTGTAATCCTGTACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ETLLGPGKTYRDKFMPSFHSSRS*CNPVPG Trigger: TCCTGGTACAGGATTACATCATGACCTACTGGAATG...GAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR TCA 90 bp | GATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGGGAGCATTTACTTGCTaGAGATCTGAAACAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: DPFGSCVGIRFHLGCARRGAFTC*RSETEA Trigger: GGCCTCTGTTTCAGATCTTCAGCAAGTAAATGCTCC...CCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR TCA 90 bp | GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCTTCTCTTGGCACAGGTaGCACAGAATCCATTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: GEDPFGSCVGIRFHLGCAFSWHR*HRIHCF Trigger: AAAGCAATGGATTCTGTGTCACCTGTGCCAAGAGAA...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR GCA 90 bp | AGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATAATAGGCCCAGGTaGCAGACTCTTCTGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: RDKFMPSFFIPDYFEERIHNRPR*QTLLCR Trigger: CCTACACAGAAGAGTCTGGCACCTGGGCCTATTATG...GATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR GCA 90 bp | GATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGCTGAAACAGAGGCCATaGAACTTGTGCTGTACACTA | + |
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Preference number: 4 (lower is better) Translates to: DPFGSCVGIRFHLGCARRLKQRP*NLCCTL Trigger: TAGTGTACAGCACAAGTTGCATGGCCTCTGTTTCAG...CCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CCA 90 bp | AGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCAATCCCAGGCTTCAGTaGCTCCATCATTCAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RDKFMPSFFIPDYFEERINPRLQ*LHHSGR Trigger: CCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATT...GATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| 3UTR CAA 72 bp | TCCATATCAAGGGTCCATAACATGGCACCTCCCAGGTaGTTCTGTTTAAGCCATTCAGCCTTGATTCGAAAA | + |
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Preference number: 4 (lower is better) Translates to: SISRVHNMAPPR*FCLSHSALIRK Trigger: TTTTCGAATCAAGGCTGAATGGCTTAAACAGAACAACCTGGGAGGTGCCATGTTATGGACCCTTGATATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| 3UTR CAA 72 bp | TACCAGATTATTTTGAGGAGAGGATCCATTTGGAAGTaGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: YQIILRRGSIWK*CWNKIPFGLCQ Trigger: CTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| 3UTR CAA 72 bp | ACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTaGAGGAGAGGATCCATTTGGAAGTTGTGTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: TSSCLVSSYQII*RRGSIWKLCWN Trigger: ATTCCAACACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | TCGCAAGGAGCAAAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGCCCAGTATAGCCATCTaGGGAGCCATGGAGATTGTA | + |
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Preference number: 5 (lower is better) Translates to: SQGAKETLLGPGKTYRDKPSIAI*GAMEIV Trigger: TACAATCTCCATGGCTCCCAAGATGGCTATACTGGG...CTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTTTGCTCCTTGCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054973.8 |
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| CDS-3UTR CAA 90 bp | AGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATGCCTAGTTTCTGGAGCACTTATTCCATaGTTGGAGGGGTCACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: RLFWALEKLIGTSSCLVSGALIP*LEGSLR Trigger: CCTGAGTGACCCCTCCAACAATGGAATAAGTGCTCC...AGAAACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | AAGGAGACTCTTCTGGGCCCTGGAAAAACTTATAGGGACAAGTTCATGCCTAGTAGATGTCAGAGGGAATaGGCCCTGGTTGCAGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: KETLLGPGKTYRDKFMPSRCQRE*ALVAER Trigger: TCTTTCTGCAACCAGGGCCAATTCCCTCTGACATCT...ACTAGGCATGAACTTGTCCCTATAAGTTTTTCCAGGGCCCAGAAGAGTCTCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | GATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGCAGAGGCCATGCAACTaGTGCTGTACACTAAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: DPFGSCVGIRFHLGCARRQRPCN*CCTLRG Trigger: CCCTCTTAGTGTACAGCACAAGTTGCATGGCCTCTG...CCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCATGGCACCTCCCAGGTaGTTCTGTTTAAGCCATTCA | + |
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Preference number: 5 (lower is better) Translates to: GEDPFGSCVGIRFHLGCAMAPPR*FCLSHS Trigger: TGAATGGCTTAAACAGAACAACCTGGGAGGTGCCAT...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | ATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCAGAAGGCATTTGGGAATTGGCCCTGGTaGCAGAAAGAGCCAGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: IWKLCWNKIPFGLCQKAFGNWPW*QKEPVK Trigger: CTTCACTGGCTCTTTCTGCAACCAGGGCCAATTCCC...AAATGCCTTCTGGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS GCA 90 bp | AGTCCCGTCCTCCAATGGCCAGGAGGGTTTTCAGCTGTACGTTTCTaGTTTTTAGAGTATTTAAGGCTTGGTAGTCAGTCAAGTCATTCA | + |
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Preference number: 5 (lower is better) Translates to: SPVLQWPGGFSAVRF*FLEYLRLGSQSSHS Trigger: TGAATGACTTGACTGACTACCAAGCCTTAAATACTCTAAAAAGCAGAAACGTACAGCTGAAAACCCTCCTGGCCATTGGAGGACGGGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200146.2 |
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| CDS CCA 90 bp | ACACAGGCAGGGGTCAATATCAGCAGGATTGAAACTTCCCAATTTTaGTCTGTTCTGGGCTACATTATTATAGTAGCACATCAGCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: TQAGVNISRIETSQF*SVLGYIIIVAHQLV Trigger: TACCAGCTGATGTGCTACTATAATAATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGACCCCTGCCTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200146.2 |
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| CDS-3UTR CAA 90 bp | GGAGAGGATCCATTTGGAAGTTGTGTTGGAATAAGATTCCATTTGGGCTGTGCCTTAAGCCATTCAGCCTaGATTCGAAAACTCTTGACA | + |
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Preference number: 5 (lower is better) Translates to: GEDPFGSCVGIRFHLGCALSHSA*IRKLLT Trigger: TGTCAAGAGTTTTCGAATCAAGGCTGAATGGCTTAA...GGCACAGCCCAAATGGAATCTTATTCCAACACAACTTCCAAATGGATCCTCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | CCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTGGAAGTTGTGATGAAAGTCTGTTGGTaGTGTGGAGTGGAGACCATG | + |
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Preference number: 5 (lower is better) Translates to: PSFFIPDYFEERIHLEVVMKVCW*CGVETM Trigger: CATGGTCTCCACTCCACACAACCAACAGACTTTCAT...CACAACTTCCAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | AAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAGGATCCATTTGACTCAGGGTGAAGGTTaGTCCATATGCTGGGAATCC | + |
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Preference number: 5 (lower is better) Translates to: KFMPSFFIPDYFEERIHLTQGEG*SICWES Trigger: GGATTCCCAGCATATGGACAAACCTTCACCCTGAGT...CAAATGGATCCTCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066537.10 |
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| CDS-3UTR CAA 90 bp | CTTATAGGGACAAGTTCATGCCTAGTTTCTTCATACCAGATTATTTTGAGGAGAATGAAAGTCTGTTGGTaGTGTGGAGTGGAGACCATG | + |
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Preference number: 5 (lower is better) Translates to: LIGTSSCLVSSYQIILRRMKVCW*CGVETM Trigger: CATGGTCTCCACTCCACACAACCAACAGACTTTCAT...TCTCCTCAAAATAATCTGGTATGAAGAAACTAGGCATGAACTTGTCCCTATAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054973.8 ENSMUST00000066537.10 |
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| CDS TCA 72 bp | GGTGAGTACACAGGCAGGGGTCAATATCAGCAGGATTaGAACTTCCCAATTTTGGTCTGTTCTGGGCTACAT | + |
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Preference number: 6 (lower is better) Translates to: GEYTGRGQYQQD*NFPILVCSGLH Trigger: ATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGACCCCTGCCTGTGTACTCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200146.2 |
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| CDS GCA 72 bp | CTCCAATGGCCAGGAGGGTTTTCAGCTGTACGTTTCTaGTTTTTAGAGTATTTAAGGCTTGGTAGTCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: LQWPGGFSAVRF*FLEYLRLGSQS Trigger: TGACTGACTACCAAGCCTTAAATACTCTAAAAAGCAGAAACGTACAGCTGAAAACCCTCCTGGCCATTGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200146.2 |
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| CDS CCA 72 bp | GGGGTCAATATCAGCAGGATTGAAACTTCCCAATTTTaGTCTGTTCTGGGCTACATTATTATAGTAGCACAT | + |
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Preference number: 6 (lower is better) Translates to: GVNISRIETSQF*SVLGYIIIVAH Trigger: ATGTGCTACTATAATAATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGACCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200146.2 |
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