Pregenerated sensors for CHIC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031327Ensembl transcript IDs: ENSMUST00000116547.3
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTAAGTCCGTTCGGATAGATCCTTTTGGTGAGCAGGGAACTTGGTaGGACACTGAAGGAGATGTGAAATTGAGCCTGCAACTCTTCACA | + |
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Preference number: 1 (lower is better) Translates to: SKSVRIDPFGEQGTW*DTEGDVKLSLQLFT Trigger: TGTGAAGAGTTGCAGGCTCAATTTCACATCTCCTTCAGTGTCTCACCAAGTTCCCTGCTCACCAAAAGGATCTATCCGAACGGACTTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 90 bp | AGGCTTGCGCCACCACTGCCTGGCTTGGGATATTTAATTCTTAAGTaGGTTTTGGTAGGGTCTTCAATCAAAGACAGTCCTTCCAGAACT | + |
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Preference number: 1 (lower is better) Translates to: RLAPPLPGLGYLILK*VLVGSSIKDSPSRT Trigger: AGTTCTGGAAGGACTGTCTTTGATTGAAGACCCTACCAAAACTCACTTAAGAATTAAATATCCCAAGCCAGGCAGTGGTGGCGCAAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 90 bp | CATGTCAATAGACAGAACAGGAAAGAACATGAGCAAAATGCATGGTaGTTCCATGTGTTGTTTGGCTGGTGTAGAAGGAATGTGATAGGT | + |
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Preference number: 1 (lower is better) Translates to: HVNRQNRKEHEQNAW*FHVLFGWCRRNVIG Trigger: ACCTATCACATTCCTTCTACACCAGCCAAACAACACATGGAATCACCATGCATTTTGCTCATGTTCTTTCCTGTTCTGTCTATTGACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 90 bp | AAATGGAAAAGAAGGTTCTTGGTCTCAGGTGTGATGCCTAAGATCTaGAGTAATGATTTCAATTTTAATCCACTTATTAGGAAGGGCACT | + |
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Preference number: 1 (lower is better) Translates to: KWKRRFLVSGVMPKI*SNDFNFNPLIRKGT Trigger: AGTGCCCTTCCTAATAAGTGGATTAAAATTGAAATCATTACTTCAGATCTTAGGCATCACACCTGAGACCAAGAACCTTCTTTTCCATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 90 bp | GGGCACTCCGCCCCACACCTGAAATTTAACATACTCAGTTTGGCTTaGCCACAAAACAGCATGTTAAAGGTCTCTACATTCAACAGGATG | + |
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Preference number: 2 (lower is better) Translates to: GHSAPHLKFNILSLA*PQNSMLKVSTFNRM Trigger: CATCCTGTTGAATGTAGAGACCTTTAACATGCTGTTTTGTGGCAAAGCCAAACTGAGTATGTTAAATTTCAGGTGTGGGGCGGAGTGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCAGATCTGCCTGCCTTTaGCTCCCAAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTRSACL*LPSAGI Trigger: AATCCCAGCACTTGGGAGGCAAAGGCAGGCAGATCT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CCA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTTTAACATACTCAGTTTaGCTTTGCCACAAAACAGCA | + |
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Preference number: 2 (lower is better) Translates to: SKKGKEMRASEAVRWGWSLTYSV*LCHKTA Trigger: TGCTGTTTTGTGGCAAAGCCAAACTGAGTATGTTAA...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCAGTGAGGCTGTAAGATaGGGGTGGAGTGGAGGAGAA | + |
|
Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTSEAVR*GWSGGE Trigger: TTCTCCTCCACTCCACCCCCATCTTACAGCCTCACT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 90 bp | GAATTAAGCAGCAGAGCTAGGAATGAAACCAGAAGTGACTTGGGTTaGAACTTTCATGCCATTTTCCTTTCCACCGAATTTTCTAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: ELSSRARNETRSDLG*NFHAIFLSTEFSKS Trigger: GGACTTAGAAAATTCGGTGGAAAGGAAAATGGCATGAAAGTTCAAACCCAAGTCACTTCTGGTTTCATTCCTAGCTCTGCTGCTTAATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR TCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCAGACCAGGTTGGTCTTaGACTCAAAGAGATCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTRPGWS*TQRDLW Trigger: CCACAGATCTCTTTGAGTTCAAGACCAACCTGGTCT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCTGCGCCACCACTGCCTaGCTTGGGATATTTAATTCT | + |
|
Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTCATTA*LGIFNS Trigger: AGAATTAAATATCCCAAGCCAGGCAGTGGTGGCGCA...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR TCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCACTCCGCCCCACACCTaGAATTTAACATACTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTTPPHT*NLTYSV Trigger: AACTGAGTATGTTAAATTTCAGGTGTGGGGCGGAGT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR GCA 90 bp | CTGAAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTAATCATAAGGCAGCATaGTCAGAACAAGGTTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: LKSCVPSKKGKEMRASEANHKAA*SEQGFC Trigger: ACAAAAACCTTGTTCTGAGCATGCTGCCTTATGATT...AGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCGACAATTTAGCAAAGTaGAGGAGGAAACCAGTGCTA | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTDNLAK*RRKPVL Trigger: TAGCACTGGTTTCCTCCTGCACTTTGCTAAATTGTC...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR TCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCTTCCGTTCACTGAGATaGGCTTACTTAAAAGCAGTT | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTFRSLR*AYLKAV Trigger: AACTGCTTTTAAGTAAGCTCATCTCAGTGAACGGAA...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCTACCAAAAGCTTATTTaGGTGTGTCCAGTAAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTYQKLI*VCPVRD Trigger: ATCCCTTACTGGACACACCCAAATAAGCTTTTGGTA...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCACAAGACATTGGGTATaGATTTTCAAAGGCTTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTTRHWV*IFKGFL Trigger: AAGGAAGCCTTTGAAAATGCATACCCAATGTCTTGT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCAACCTAGTGCTATCATaGCTACTTGAAAAGAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTNLVLS*LLEKKH Trigger: ATGCTTCTTTTCAAGTAGGCATGATAGCACTAGGTT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCCTCAAAAAGATTTTGTaGAAACCATTAGAGCCACAT | + |
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Preference number: 2 (lower is better) Translates to: AKMKVLRICKGLTTFENTLKKIL*KPLEPH Trigger: ATGTGGCTCTAATGGTTTGCACAAAATCTTTTTGAG...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTaGCTTTGCCTCCCAAGTGCTGGGATTAAAGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPQTQRSA*LCLPSAGIKGL Trigger: CAAGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGCAGATCTCTGAGTTTGAGGCCAGCCTGGTCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | CAATCCTGTGTGTGTGTGTGCATGGACACACCCCACTaGATCAGTTCAGTTCTAGAGTCCAGAGACAAACCA | + |
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Preference number: 3 (lower is better) Translates to: QSCVCVCMDTPH*ISSVLESRDKP Trigger: TGGTTTGTCTCTGGACTCTAGAACTGAACTGATTCAGTGGGGTGTGTCCATGCACACACACACACAGGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CAA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTCTACCAAAAGCTTATTaGGGTGTGTCCAGTAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: SKKGKEMRASEAVRWGWSLPKAY*GVSSKG Trigger: TCCCTTACTGGACACACCCAAATAAGCTTTTGGTAG...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | TCCCCAATCAGACGGCTGAAACTGTTTTCTCAACTCTaGCTAGCCTACTATGTAGGTAGAGCTTCTCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: SPIRRLKLFSQL*LAYYVGRASLC Trigger: GCACAGAGAAGCTCTACCTACATAGTAGGCTAGTCAGAGTTGAGAAAACAGTTTCAGCCGTCTGATTGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | GCTACTTTCCACTGCTATTTTTCATCTACTCTAACCTaGGGGCCACTAGTTTACACCCACCTGCTTTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: ATFHCYFSSTLT*GPLVYTHLLSS Trigger: GGAGGAAAGCAGGTGGGTGTAAACTAGTGGCCCTCAGGTTAGAGTAGATGAAAAATAGCAGTGGAAAGTAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | GTCCAGAATATTGTCCCCACTTCAGCAATGAGGACATaGGGTACAGAGGAATTAAGCAGCAGAGCTAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: VQNIVPTSAMRT*GTEELSSRARN Trigger: ATTCCTAGCTCTGCTGCTTAATTCCTCTGTACCTCATGTCCTCATTGCTGAAGTGGGGACAATATTCTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR GCA 72 bp | CCAAGTGCAGATCCGAGAATAACCATTTTCACACACTaGACAGCAAAGATCTTCTGTGGCTTCTCAGAACCA | + |
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Preference number: 3 (lower is better) Translates to: PSADPRITIFTH*TAKIFCGFSEP Trigger: TGGTTCTGAGAAGCCACAGAAGATCTTTGCTGTGCAGTGTGTGAAAATGGTTATTCTCGGATCTGCACTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CAA 90 bp | CTGAAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTTGGAAAAGAAGGTTCTaGGTCTCAGGTGTGATGCCT | + |
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Preference number: 3 (lower is better) Translates to: LKSCVPSKKGKEMRASEAWKRRF*VSGVMP Trigger: AGGCATCACACCTGAGACCAAGAACCTTCTTTTCCA...AGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | AATCCACTTATTAGGAAGGGCACTCCGCCCCACACCTaGAATTTAACATACTCAGTTTGGCTTTGCCACAAA | + |
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Preference number: 3 (lower is better) Translates to: NPLIRKGTPPHT*NLTYSVWLCHK Trigger: TTTGTGGCAAAGCCAAACTGAGTATGTTAAATTTCAGGTGTGGGGCGGAGTGCCCTTCCTAATAAGTGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CCA 72 bp | AAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTaGAGTGGAGGAGAAATGGAAAACAGTGAAGTAAAT | + |
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Preference number: 3 (lower is better) Translates to: KEMRASEAVRWG*SGGEMENSEVN Trigger: ATTTACTTCACTGTTTTCCATTTCTCCTCCACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CAA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTGTTGTAAAGAATAAATaGAACACAGCGAAGGAGACT | + |
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Preference number: 3 (lower is better) Translates to: SKKGKEMRASEAVRWGWSVVKNK*NTAKET Trigger: AGTCTCCTTCGCTGTGTTCAATTTATTCTTTACAAC...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | AGACAGAACAGGAAAGAACATGAGCAAAATGCATGGTaGTTCCATGTGTTGTTTGGCTGGTGTAGAAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: RQNRKEHEQNAW*FHVLFGWCRRN Trigger: ATTCCTTCTACACCAGCCAAACAACACATGGAATCACCATGCATTTTGCTCATGTTCTTTCCTGTTCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR TCA 72 bp | AACGGTATGTGCCCAGCTCTTAAGACATTTAAAGACTaGAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: NGMCPALKTFKD*NLVYLQRRERK Trigger: TTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAGTCTTTAAATGTCTTAAGAGCTGGGCACATACCGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CAA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCATACTCAGTTTGGCTTaGCCACAAAACAGCATGTTA | + |
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Preference number: 3 (lower is better) Translates to: AKMKVLRICKGLTTFENTILSLA*PQNSML Trigger: TAACATGCTGTTTTGTGGCAAAGCCAAACTGAGTAT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CAA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCTTAAAGACTGAAATCTaGTGTACCTTCAAAGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: AKMKVLRICKGLTTFENTLKTEI*CTFKEG Trigger: CCCTTCTTTGAAGGTACACAAGATTTCAGTCTTTAA...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR-3UTR CAA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCAGCAGGCAGACATATTaGCAGGCATACATAATATAT | + |
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Preference number: 3 (lower is better) Translates to: AKMKVLRICKGLTTFENTSRQTY*QAYIIY Trigger: ATATATTATGTATGCCTGCAAATATGTCTGCCTGCT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR GCA 72 bp | ATCTTTAGAACAACGCCAGCTCTATCTGGATGTCCTTaGAGTAGAAATTCACACTTATATATAATTAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: IFRTTPALSGCP*SRNSHLYIISP Trigger: TGGACTAATTATATATAAGTGTGAATTTCTACTGCAAGGACATCCAGATAGAGCTGGCGTTGTTCTAAAGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR GCA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTAGACGACGACGATGTTaGTGCCTCTTCTTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SKKGKEMRASEAVRWGWSRRRRC*CLFFFL Trigger: GAGGAAGAAGAAGAGGCAGCAACATCGTCGTCGTCT...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCTCACGGGCCACAGGCTaGACCCCAGGGTACAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: AKMKVLRICKGLTTFENTSRATG*TPGYSS Trigger: GCTGCTGTACCCTGGGGTGCAGCCTGTGGCCCGTGA...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCCCAAACACAGTGATGTaGCCGGCGCCGCGCACCAAC | + |
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Preference number: 4 (lower is better) Translates to: AKMKVLRICKGLTTFENTPNTVM*PAPRTN Trigger: GTTGGTGCGCGGCGCCGGCCACATCACTGTGTTTGG...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CCA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTGGTCTTAAATTCTTCTaGAGCCACCTTCCCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: SKKGKEMRASEAVRWGWSGLKFF*SHLPCQ Trigger: CTGACAGGGAAGGTGGCTCCAGAAGAATTTAAGACC...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CCA 90 bp | CTGAAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTCCTCCAATTCCGAGATaGTGTCGAACTCCGCCATGT | + |
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Preference number: 4 (lower is better) Translates to: LKSCVPSKKGKEMRASEAPPIPR*CRTPPC Trigger: ACATGGCGGAGTTCGACACCATCTCGGAATTGGAGG...AGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR TCA 90 bp | CTGAAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTAGCCTTTTTCAAGCATaGGTTCACACGGCCAATGCT | + |
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Preference number: 4 (lower is better) Translates to: LKSCVPSKKGKEMRASEASLFQA*VHTANA Trigger: AGCATTGGCCGTGTGAACTCATGCTTGAAAAAGGCT...AGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCGCATATCTCCGCAGATaGTCCTCGCTCACTACCCGA | + |
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Preference number: 4 (lower is better) Translates to: AKMKVLRICKGLTTFENTAYLRR*SSLTTR Trigger: TCGGGTAGTGAGCGAGGAGCATCTGCGGAGATATGC...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR TCA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTCATTCTAGTAACTTCTaGATCGATCTTCTGGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SKKGKEMRASEAVRWGWSHSSNF*IDLLVL Trigger: AAGAACCAGAAGATCGATTCAGAAGTTACTAGAATG...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CCA 90 bp | TCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTGTAAGATGGGGGTGGAGTTGCAGAGCAAGCTTGTaGTATAATCTGTTATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SKKGKEMRASEAVRWGWSCRASL*YNLLFS Trigger: GGAAAATAACAGATTATACCACAAGCTTGCTCTGCA...ACTCCACCCCCATCTTACAGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 72 bp | TTAAGCAGCAGAGCTAGGAATGAAACCAGAAGTGACTaGGGTTTGAACTTTCATGCCATTTTCCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: LSSRARNETRSD*GLNFHAIFLST Trigger: GGTGGAAAGGAAAATGGCATGAAAGTTCAAACCCAAGTCACTTCTGGTTTCATTCCTAGCTCTGCTGCTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR GCA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCCGACGACGATGTTGCTaGCTCTTCTTCTTCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: AKMKVLRICKGLTTFENTRRRCC*LFFFLQ Trigger: TTGGAGGAAGAAGAAGAGGCAGCAACATCGTCGTCG...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 72 bp | GCCCCACACCTGAAATTTAACATACTCAGTTTGGCTTaGCCACAAAACAGCATGTTAAAGGTCTCTACATTC | + |
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Preference number: 4 (lower is better) Translates to: APHLKFNILSLA*PQNSMLKVSTF Trigger: GAATGTAGAGACCTTTAACATGCTGTTTTGTGGCAAAGCCAAACTGAGTATGTTAAATTTCAGGTGTGGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 72 bp | TTTTATCAGCACAGAGGGAATAAGGTCTACCAGGCATaGGGTTCTTTGAGTGTGTTTTCACTAACACACATC | + |
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Preference number: 4 (lower is better) Translates to: FYQHRGNKVYQA*GSLSVFSLTHI Trigger: GATGTGTGTTAGTGAAAACACACTCAAAGAACCCAATGCCTGGTAGACCTTATTCCCTCTGTGCTGATAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CCA 90 bp | CTGAAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTAGTCGGGTCGGAATATaGGGTATTTTGGTAAGAATT | + |
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Preference number: 4 (lower is better) Translates to: LKSCVPSKKGKEMRASEASRVGI*GILVRI Trigger: AATTCTTACCAAAATACCCCATATTCCGACCCGACT...AGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 72 bp | TGTGCCCAGCTCTTAAGACATTTAAAGACTGAAATCTaGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: CAQLLRHLKTEI*CTFKEGKGNES Trigger: GCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAGTCTTTAAATGTCTTAAGAGCTGGGCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| 3UTR CAA 72 bp | TTACAGAGGAAAACACTGACACATAATTTAGACCACTaGCCTGGGGCCACAATATTAGATAGTTTCTTCATT | + |
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Preference number: 4 (lower is better) Translates to: LQRKTLTHNLDH*PGATILDSFFI Trigger: AATGAAGAAACTATCTAATATTGTGGCCCCAGGCAAGTGGTCTAAATTATGTGTCAGTGTTTTCCTCTGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS GCA 90 bp | CCGGCGCCGCGCACCAACACAGGGTCTGGGGCATATCTCCGCAGATaGTCCTCGCTCACTACCCGAGGCGGGGGCGGCACCTCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: PAPRTNTGSGAYLRR*SSLTTRGGGGTSSS Trigger: GGAGGAGGAGGTGCCGCCCCCGCCTCGGGTAGTGAGCGAGGAGCATCTGCGGAGATATGCCCCAGACCCTGTGTTGGTGCGCGGCGCCGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS CCA 90 bp | TCCAAACACAGTGATGTGGCCGGCGCCGCGCACCAACACAGGGTCTaGGGCATATCTCCGCAGATGCTCCTCGCTCACTACCCGAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: SKHSDVAGAAHQHRV*GISPQMLLAHYPRR Trigger: CCGCCTCGGGTAGTGAGCGAGGAGCATCTGCGGAGATATGCCCCAGACCCTGTGTTGGTGCGCGGCGCCGGCCACATCACTGTGTTTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS GCA 90 bp | CGACGACGACGACGGAGACGACGATGGAGACGACGACGATGTTGCTaGCTCTTCTTCTTCCTCCAATTCCGAGATGGTGTCGAACTCCGC | + |
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Preference number: 5 (lower is better) Translates to: RRRRRRRRWRRRRCC*LFFFLQFRDGVELR Trigger: GCGGAGTTCGACACCATCTCGGAATTGGAGGAAGAAGAAGAGGCAGCAACATCGTCGTCGTCTCCATCGTCGTCTCCGTCGTCGTCGTCG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS GCA 90 bp | CGACGACGACGACGACGGAGACGACGATGGAGACGACGACGATGTTaGTGCCTCTTCTTCTTCCTCCAATTCCGAGATGGTGTCGAACTC | + |
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Preference number: 5 (lower is better) Translates to: RRRRRRRRRWRRRRC*CLFFFLQFRDGVEL Trigger: GAGTTCGACACCATCTCGGAATTGGAGGAAGAAGAAGAGGCAGCAACATCGTCGTCGTCTCCATCGTCGTCTCCGTCGTCGTCGTCGTCG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS TCA 90 bp | CTGACGGAAATTCGGTATCAAACTTGTTGCTCAATCCAAACACAGTaGTGTGGCCGGCGCCGCGCACCAACACAGGGTCTGGGGCATATC | + |
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Preference number: 5 (lower is better) Translates to: LTEIRYQTCCSIQTQ*CGRRRAPTQGLGHI Trigger: GATATGCCCCAGACCCTGTGTTGGTGCGCGGCGCCGGCCACATCACTGTGTTTGGATTGAGCAACAAGTTTGATACCGAATTTCCGTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS TCA 90 bp | GGGTACAGCAGCAGCAGAGACATCCACACAGCAGCCATTTCACATTaGCAGGGAGAGCCTTTTTCAAGCATGAGTTCACACGGCCAATGC | + |
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Preference number: 5 (lower is better) Translates to: GYSSSRDIHTAAISH*QGEPFSSMSSHGQC Trigger: GCATTGGCCGTGTGAACTCATGCTTGAAAAAGGCTCTCCCTGTCAATGTGAAATGGCTGCTGTGTGGATGTCTCTGCTGCTGCTGTACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS TCA 90 bp | ACACAGCAGCCATTTCACATTGACAGGGAGAGCCTTTTTCAAGCATaGGTTCACACGGCCAATGCTGGTCTTAAATTCTTCTGGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: TQQPFHIDRESLFQA*VHTANAGLKFFWSH Trigger: GTGGCTCCAGAAGAATTTAAGACCAGCATTGGCCGTGTGAACTCATGCTTGAAAAAGGCTCTCCCTGTCAATGTGAAATGGCTGCTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CAA 90 bp | CTGAAATCTTGTGTACCTTCAAAGAAGGGAAAGGAAATGAGAGCTAGTGAGGCTCTTCTGGTTCTTTTGTaGAGACAAATCACGGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LKSCVPSKKGKEMRASEALLVLL*RQITGH Trigger: GTGGCCCGTGATTTGTCTCAACAAAAGAACCAGAAG...AGCCTCACTAGCTCTCATTTCCTTTCCCTTCTTTGAAGGTACACAAGATTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CAA 90 bp | GAAGGAGACTGTCTCCATTCCAAGATCATCTACAAGGCACTAAGGGTAGGAAATGATCTTCTGGTTCTTTaGTTGAGACAAATCACGGGC | + |
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Preference number: 5 (lower is better) Translates to: EGDCLHSKIIYKALRVGNDLLVL*LRQITG Trigger: GCCCGTGATTTGTCTCAACAAAAGAACCAGAAGATC...ATTTCCTACCCTTAGTGCCTTGTAGATGATCTTGGAATGGAGACAGTCTCCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCAGCAGCCATTTCACATaGACAGGGAGAGCCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: AKMKVLRICKGLTTFENTSSHFT*TGRAFF Trigger: GAAAAAGGCTCTCCCTGTCAATGTGAAATGGCTGCT...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCTCGGTATCAAACTTGTaGCTCAATCCAAACACAGTG | + |
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Preference number: 5 (lower is better) Translates to: AKMKVLRICKGLTTFENTSVSNL*LNPNTV Trigger: CACTGTGTTTGGATTGAGCAACAAGTTTGATACCGA...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAATGAAGGTGCTAAGGATTTGTAAAGGTCTCACCACATTTGAAAATACCCAGTGCAGAGCAAGCTaGTGGTATAATCTGTTATTT | + |
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Preference number: 5 (lower is better) Translates to: AKMKVLRICKGLTTFENTQCRAS*WYNLLF Trigger: AAATAACAGATTATACCACAAGCTTGCTCTGCACTG...GGTATTTTCAAATGTGGTGAGACCTTTACAAATCCTTAGCACCTTCATTTTTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS GCA 72 bp | CGCACCAACACAGGGTCTGGGGCATATCTCCGCAGATaGTCCTCGCTCACTACCCGAGGCGGGGGCGGCACC | + |
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Preference number: 6 (lower is better) Translates to: RTNTGSGAYLRR*SSLTTRGGGGT Trigger: GGTGCCGCCCCCGCCTCGGGTAGTGAGCGAGGAGCATCTGCGGAGATATGCCCCAGACCCTGTGTTGGTGCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS CCA 72 bp | AGTGATGTGGCCGGCGCCGCGCACCAACACAGGGTCTaGGGCATATCTCCGCAGATGCTCCTCGCTCACTAC | + |
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Preference number: 6 (lower is better) Translates to: SDVAGAAHQHRV*GISPQMLLAHY Trigger: GTAGTGAGCGAGGAGCATCTGCGGAGATATGCCCCAGACCCTGTGTTGGTGCGCGGCGCCGGCCACATCACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS GCA 72 bp | CGACGGAGACGACGATGGAGACGACGACGATGTTGCTaGCTCTTCTTCTTCCTCCAATTCCGAGATGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: RRRRRWRRRRCC*LFFFLQFRDGV Trigger: GACACCATCTCGGAATTGGAGGAAGAAGAAGAGGCAGCAACATCGTCGTCGTCTCCATCGTCGTCTCCGTCG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS TCA 72 bp | ATTCGGTATCAAACTTGTTGCTCAATCCAAACACAGTaGTGTGGCCGGCGCCGCGCACCAACACAGGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: IRYQTCCSIQTQ*CGRRRAPTQGL Trigger: CAGACCCTGTGTTGGTGCGCGGCGCCGGCCACATCACTGTGTTTGGATTGAGCAACAAGTTTGATACCGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS TCA 72 bp | AGCAGCAGAGACATCCACACAGCAGCCATTTCACATTaGCAGGGAGAGCCTTTTTCAAGCATGAGTTCACAC | + |
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Preference number: 6 (lower is better) Translates to: SSRDIHTAAISH*QGEPFSSMSSH Trigger: GTGTGAACTCATGCTTGAAAAAGGCTCTCCCTGTCAATGTGAAATGGCTGCTGTGTGGATGTCTCTGCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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| CDS TCA 72 bp | CCATTTCACATTGACAGGGAGAGCCTTTTTCAAGCATaGGTTCACACGGCCAATGCTGGTCTTAAATTCTTC | + |
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Preference number: 6 (lower is better) Translates to: PFHIDRESLFQA*VHTANAGLKFF Trigger: GAAGAATTTAAGACCAGCATTGGCCGTGTGAACTCATGCTTGAAAAAGGCTCTCCCTGTCAATGTGAAATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116547.3 |
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