Pregenerated sensors for CHIA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062778Ensembl transcript IDs: ENSMUST00000079132.12
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGCGGCACAGAATCCACTaGCTCCAGAGCTTCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEERHRIH*LQSFLR Trigger: CCGGAGGAAGCTCTGGAGGCAGTGGATTCTGTGCCG...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGAGCCAGCCTGGATGTTaGAAATCCCACCAGCTACAG | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEESQPGC*KSHQLQ Trigger: CTGTAGCTGGTGGGATTTCCAACATCCAGGCTGGCT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGAGCCAAGCCACTCGTTaGCCTTATAGGCATAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEESQATR*PYRHRA Trigger: TGCCCTATGCCTATAAGGCCAACGAGTGGCTTGGCT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR GCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGAGCATTTCTGTCATCTaGCACAGGGTAGAGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEESISVI*HRVEAI Trigger: GATGGCCTCTACCCTGTGGCAGATGACAGAAATGCT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR TCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGCACAGAAAGAGCCAGTaGAGTCATCAAGGTCAATGG | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEEHRKSQ*SHQGQW Trigger: CCATTGACCTTGATGACTTCACTGGCTCTTTCTGTG...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR TCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGTCCATTCTATGGTGGTaGTCTCATTGTTCTGCATCC | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEESILWW*SHCSAS Trigger: GGATGCAGAACAATGAGATCACCACCATAGAATGGA...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR TCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGAGAGGAAATTTTCCCTaGTCACAGAAAGAGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEERGNFP*SQKEPV Trigger: CACTGGCTCTTTCTGTGATCAGGGAAAATTTCCTCT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR GCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGCACTTCTCAGAAAGGTaGAAATCTCATAGTAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEEHFSER*KSHSRP Trigger: GGGCCTACTATGAGATTTGCACCTTTCTGAGAAGTG...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGGGTGTGTCCATACTCTaGGAATCCAACAATGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEEGVSIL*ESNNEL Trigger: AAGCTCATTGTTGGATTCCCAGAGTATGGACACACC...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGTGCAGCAATTACAGCTaGTATCAAAAACAAGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEECSNYS*YQKQAL Trigger: CAGGGCTTGTTTTTGATACCAGCTGTAATTGCTGCA...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR GCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGGGAGGGTTTTCAGTTTaGTGTTCCTGTTTTTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEEGGFSV*CSCFSS Trigger: ACTTGAAAAACAGGAACAGCAAACTGAAAACCCTCC...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR GCA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGATTCCATTGATGCACTaGCAAAAAGCATTTCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LPILLHKVKGKIVTFGEEIPLMH*QKAFLS Trigger: TGACAGAAATGCTTTTTGGCAGTGCATCAATGGAAT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS CCA 90 bp | GCCTCCAGAGCTTCCTCCGGAGCTTCCACCCCCACTCCCACTTCCTaGAGGAGTAGTCACTGGCTCGGAAGGCACGTCAGGAGCTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: ASRASSGASTPTPTS*RSSHWLGRHVRSCA Trigger: TGCACAGCTCCTGACGTGCCTTCCGAGCCAGTGACTACTCCTCCAGGAAGTGGGAGTGGGGGTGGAAGCTCCGGAGGAAGCTCTGGAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS CCA 90 bp | CCTTATAGGCATAGGGCACTTCTTGGGAGGCATCCCAGACCTCAGTaGCTCCACTTCTCAGAAAGGTGCAAATCTCATAGTAGGCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: PYRHRALLGRHPRPQ*LHFSERCKSHSRPR Trigger: TCTGGGCCTACTATGAGATTTGCACCTTTCTGAGAAGTGGAGCCACTGAGGTCTGGGATGCCTCCCAAGAAGTGCCCTATGCCTATAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CAA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGGGCATAGGGCACTTCTaGGGAGGCATCCCAGACCTC | + |
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Preference number: 5 (lower is better) Translates to: LPILLHKVKGKIVTFGEEGIGHF*GGIPDL Trigger: GAGGTCTGGGATGCCTCCCAAGAAGTGCCCTATGCC...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CAA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGTTAATGTCATCAGGCTaGAAGCTCCCCAGACCTGGC | + |
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Preference number: 5 (lower is better) Translates to: LPILLHKVKGKIVTFGEELMSSG*KLPRPG Trigger: GCCAGGTCTGGGGAGCTTCAAGCCTGATGACATTAA...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CAA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGAAAAACAAGCCCTGCTaGACAATGCTGCTGGTATGT | + |
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Preference number: 5 (lower is better) Translates to: LPILLHKVKGKIVTFGEEKNKPC*TMLLVC Trigger: ACATACCAGCAGCATTGTCAAGCAGGGCTTGTTTTT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CAA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGAGGAGGGTTTTCAGTTaGCTGTTCCTGTTTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: LPILLHKVKGKIVTFGEERRVFS*LFLFFK Trigger: CTTGAAAAACAGGAACAGCAAACTGAAAACCCTCCT...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS-3UTR CAA 90 bp | CTACCAATTTTATTGCATAAGGTTAAAGGGAAGATAGTTACTTTTGGTGAGGAGTGGTATGTGATTCCATaGATGCACTGCCAAAAAGCA | + |
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Preference number: 5 (lower is better) Translates to: LPILLHKVKGKIVTFGEEWYVIP*MHCQKA Trigger: TGCTTTTTGGCAGTGCATCAATGGAATCACATACCA...CTCCTCACCAAAAGTAACTATCTTCCCTTTAACCTTATGCAATAAAATTGGTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS CCA 72 bp | GCTTCCTCCGGAGCTTCCACCCCCACTCCCACTTCCTaGAGGAGTAGTCACTGGCTCGGAAGGCACGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: ASSGASTPTPTS*RSSHWLGRHVR Trigger: CCTGACGTGCCTTCCGAGCCAGTGACTACTCCTCCAGGAAGTGGGAGTGGGGGTGGAAGCTCCGGAGGAAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS CCA 72 bp | TCCACCCCCACTCCCACTTCCTGGAGGAGTAGTCACTaGCTCGGAAGGCACGTCAGGAGCTGTGCAACCTTC | + |
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Preference number: 6 (lower is better) Translates to: STPTPTSWRSSH*LGRHVRSCATF Trigger: GAAGGTTGCACAGCTCCTGACGTGCCTTCCGAGCCAGTGACTACTCCTCCAGGAAGTGGGAGTGGGGGTGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS CAA 72 bp | AAGCCACTCGTTGGCCTTATAGGCATAGGGCACTTCTaGGGAGGCATCCCAGACCTCAGTGGCTCCACTTCT | + |
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Preference number: 6 (lower is better) Translates to: KPLVGLIGIGHF*GGIPDLSGSTS Trigger: AGAAGTGGAGCCACTGAGGTCTGGGATGCCTCCCAAGAAGTGCCCTATGCCTATAAGGCCAACGAGTGGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS GCA 72 bp | CATCCCAGACCTCAGTGGCTCCACTTCTCAGAAAGGTaGAAATCTCATAGTAGGCCCAGAACCCAGCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: HPRPQWLHFSER*KSHSRPRTQPV Trigger: GACAGGCTGGGTTCTGGGCCTACTATGAGATTTGCACCTTTCTGAGAAGTGGAGCCACTGAGGTCTGGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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| CDS CAA 72 bp | GCAGCAATTACAGCTGGTATCAAAAACAAGCCCTGCTaGACAATGCTGCTGGTATGTGATTCCATTGATGCA | + |
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Preference number: 6 (lower is better) Translates to: AAITAGIKNKPC*TMLLVCDSIDA Trigger: TGCATCAATGGAATCACATACCAGCAGCATTGTCAAGCAGGGCTTGTTTTTGATACCAGCTGTAATTGCTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079132.12 |
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