RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHFR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014668

Ensembl transcript IDs: ENSMUST00000014812.13, ENSMUST00000112519.9, ENSMUST00000198066.5, ENSMUST00000198633.5, ENSMUST00000199283.2, ENSMUST00000199557.5, ENSMUST00000199672.5, ENSMUST00000199811.3, ENSMUST00000200038.2

Found 442 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCTCACTCTCTaGGACTGGGCAAGGAAGAGACTGCACCGCTTGCCTTCTGTATTC +
Preference number: 1 (lower is better)
Translates to: RCLPTKGQCSSQLTL*DWARKRLHRLPSVF
Trigger: GAATACAGAAGGCAAGCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 90 bp CTCCCCACCAAGGGCCAGTGTAGCTCCCAGCTCACTCTCTGGGACTaGGCAAGGAAGAGACTGCACCGCTTGCCTTCTGTATTCAGGACA +
Preference number: 1 (lower is better)
Translates to: LPTKGQCSSQLTLWD*ARKRLHRLPSVFRT
Trigger: TGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTTGGTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 90 bp GATGCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTCCGTAGAAGAGGTAGAGGCCGTGGG +
Preference number: 1 (lower is better)
Translates to: DACVPRSRARRMLLP*RGQLWLRRRGRGRG
Trigger: CCCACGGCCTCTACCTCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 90 bp GGGGAGATGCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCTGGCTCCGTAGAAGAGGTAGAGGCC +
Preference number: 1 (lower is better)
Translates to: GEMLVFPGPELEECF*PAEVSSGSVEEVEA
Trigger: GGCCTCTACCTCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGCATCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 90 bp CTAATGTACCAGATGAGGGCTTGGAAAGCAAAGGCCCTGTCAGTCTaGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGG +
Preference number: 1 (lower is better)
Translates to: LMYQMRAWKAKALSV*SHLEFQQGVALRDW
Trigger: CCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTTGCTTTCCAAGCCCTCATCTGGTACATTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR TCA 90 bp TTTGCAAATCCGCTCCACTGGACATCGGCAGGTAGGGCACAGAGATaGACGCTCCATCCAACCAGAGTAGCAAGCCGCACAAAATGTGTG +
Preference number: 1 (lower is better)
Translates to: FANPLHWTSAGRAQR*TLHPTRVASRTKCV
Trigger: CACACATTTTGTGCGGCTTGCTACTCTGGTTGGATGGAGCGTTCATCTCTGTGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR TCA 90 bp AGGTCTGATGTCGATGTTGATGGCTGTGGTTCCTCTAAGCATGTCTaGGCCATGGGTGACAATAGTGGAACCTGGGGATCATCACCCTGC +
Preference number: 1 (lower is better)
Translates to: RSDVDVDGCGSSKHV*AMGDNSGTWGSSPC
Trigger: GCAGGGTGATGATCCCCAGGTTCCACTATTGTCACCCATGGCTCAGACATGCTTAGAGGAACCACAGCCATCAACATCGACATCAGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 90 bp TCTGGGTGCTGGATAAGGTATGCTTCCACTAGGTTGTTCAGGATGTaGTTTTTGCAAATCCGCTCCACTGGACATCGGCAGGTAGGGCAC +
Preference number: 1 (lower is better)
Translates to: SGCWIRYASTRLFRM*FLQIRSTGHRQVGH
Trigger: GTGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAACAACCTAGTGGAAGCATACCTTATCCAGCACCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR TCA 90 bp TACAAGGCTGCAAACTCACACAATCGTGCAGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCTCCATCTTGTCTGGCTTCACAGAGG +
Preference number: 1 (lower is better)
Translates to: YKAANSHNRAEGPGR*YRLVSPPSCLASQR
Trigger: CCTCTGTGAAGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTTGCAGCCTTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CCA 90 bp GTGTGCATACAAGGCTGCAAACTCACACAATCGTGCAGAAGGTCCTaGCAGATGATACAGGTTAGTGTCTCCTCCATCTTGTCTGGCTTC +
Preference number: 1 (lower is better)
Translates to: VCIQGCKLTQSCRRS*QMIQVSVSSILSGF
Trigger: GAAGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTTGCAGCCTTGTATGCACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR TCA 90 bp AGGTTAGTGTCTCCTCCATCTTGTCTGGCTTCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTTGGGCATTTCCACGCTGGCCTGAAA +
Preference number: 1 (lower is better)
Translates to: RLVSPPSCLASQRHL*HLHLRFGHFHAGLK
Trigger: TTTCAGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACTAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 90 bp ACTGCGACTTTTATCTCACACAATCGTGCAGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCTCCATCTTGTCTGGCTTCACAGAGG +
Preference number: 1 (lower is better)
Translates to: TATFISHNRAEGPGR*YRLVSPPSCLASQR
Trigger: CCTCTGTGAAGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGATAAAAGTCGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR GCA 90 bp ACCATAGTCAAGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTG +
Preference number: 1 (lower is better)
Translates to: TIVKVQGRKDTKVQT*TVTASAHRRESGPV
Trigger: CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCTTGACTATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR CCA 90 bp GTGGAACCTGGGGATCATCACCCTGCCCTGGACCTGAGCAATCTTTaGTCACATGGAACATATTTTCCTTATTGGCTTCAAGGGAGTCTT +
Preference number: 1 (lower is better)
Translates to: VEPGDHHPALDLSNL*SHGTYFPYWLQGSL
Trigger: AAGACTCCCTTGAAGCCAATAAGGAAAATATGTTCCATGTGACCAAAGATTGCTCAGGTCCAGGGCAGGGTGATGATCCCCAGGTTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 90 bp GCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTGACTaGTATCTGAGGATTCACTGTCGACATCAGACAGCTCTAGCAGGT +
Preference number: 1 (lower is better)
Translates to: AFCIQDTVCRQCMAD*YLRIHCRHQTALAG
Trigger: ACCTGCTAGAGCTGTCTGATGTCGACAGTGAATCCTCAGATATCAGTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 90 bp GCTTGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTaGCTGATATCTGAGGATTCACTGTCGACATCAGACAGCTCTAGC +
Preference number: 1 (lower is better)
Translates to: ACLLYSGHCLQTMYG*LISEDSLSTSDSSS
Trigger: GCTAGAGCTGTCTGATGTCGACAGTGAATCCTCAGATATCAGTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 90 bp ATTATTCCAGATGACATGGCAAACCTAATGTACCAGATGAGGGCTTaGAAAGCAAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAG +
Preference number: 1 (lower is better)
Translates to: IIPDDMANLMYQMRA*KAKALSVWSHLEFQ
Trigger: CTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTTGCTTTCCAAGCCCTCATCTGGTACATTAGGTTTGCCATGTCATCTGGAATAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR CCA 90 bp TTGTCTGGCTTCACAGAGGCATCTTTGACATCTTCACTTGAGGTTTaGGCATTTCCACGCTGGCCTGAAACTAATAACTGGAGGTTCGTG +
Preference number: 1 (lower is better)
Translates to: LSGFTEASLTSSLEV*AFPRWPETNNWRFV
Trigger: CACGAACCTCCAGTTATTAGTTTCAGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 90 bp CTTCTTCACTGCGACTTTTATCTCACACAATCGTGCAGAAGGTCCTaGCAGATGATACAGGTTAGTGTCTCCTCCATCTTGTCTGGCTTC +
Preference number: 1 (lower is better)
Translates to: LLHCDFYLTQSCRRS*QMIQVSVSSILSGF
Trigger: GAAGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGATAAAAGTCGCAGTGAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR CCA 90 bp ATCTCCAGAGACCAGTTTATTGCTGGGGAAAGAGAGGTCACAGCCTaGGAGATCTCATCGTATCAGCAGCTTTGTCACGATAGTTTATCT +
Preference number: 1 (lower is better)
Translates to: ISRDQFIAGEREVTA*EISSYQQLCHDSLS
Trigger: AGATAAACTATCGTGACAAAGCTGCTGATACGATGAGATCTCCCAGGCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199672.5
3UTR TCA 90 bp TCCAGTGTCACCTCACCAGATATTTCATCCACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTATTGCTGGGGAAAGAGAGGTCACAG +
Preference number: 1 (lower is better)
Translates to: SSVTSPDISSTVSLQ*SPETSLLLGKERSQ
Trigger: CTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGGAGATCACTGTAAACTTACAGTGGATGAAATATCTGGTGAGGTGACACTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 90 bp GAGCCAGGAGACTCTCTGTCAACACACTTTTCCATGTCAGACCCCTaGTTGCCAGGTAATTCTTCAGGATGTCCGATTCATAATTGTTAT +
Preference number: 1 (lower is better)
Translates to: EPGDSLSTHFSMSDP*LPGNSSGCPIHNCY
Trigger: ATAACAATTATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGAGTCTCCTGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR GCA 90 bp AGGCTCCAATTCCTCATGGTCTTTACTTTCCAGCAAAGAAAAGGATaGTTCTTTGTCTTGGAAAACTGGAGAAAGGCTAGAGAGTTCGCC +
Preference number: 1 (lower is better)
Translates to: RLQFLMVFTFQQRKG*FFVLENWRKAREFA
Trigger: GGCGAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTGGAAAGTAAAGACCATGAGGAATTGGAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 90 bp CAGGAGACTCTCTGTCAACACACTTTTCCATGTCAGACCCCTGGTTaGCAGGTAATTCTTCAGGATGTCCGATTCATAATTGTTATTGTT +
Preference number: 1 (lower is better)
Translates to: QETLCQHTFPCQTPG*QVILQDVRFIIVIV
Trigger: AACAATAACAATTATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGAGTCTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR GCA 90 bp CCTCCTGACTTTGGGTTGCAGCATATCTTGAGTGATTTTATTCCTTaGATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCTGG +
Preference number: 1 (lower is better)
Translates to: PPDFGLQHILSDFIP*IHTSHIFFTATFIW
Trigger: CCAGATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CCA 90 bp CTGGACCTGAGCAATCTTTGGTCACATGGAACATATTTTCCTTATTaGCTTCAAGGGAGTCTTGAGTTAAGCTCTGTTTGCCACTTAAAG +
Preference number: 1 (lower is better)
Translates to: LDLSNLWSHGTYFPY*LQGSLELSSVCHLK
Trigger: CTTTAAGTGGCAAACAGAGCTTAACTCAAGACTCCCTTGAAGCCAATAAGGAAAATATGTTCCATGTGACCAAAGATTGCTCAGGTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 90 bp CCTCCTGACTTTGGGTTGCAGCATATCTTGAGTGATTTTATTCCTTaGATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCTCA +
Preference number: 1 (lower is better)
Translates to: PPDFGLQHILSDFIP*IHTSHIFFTATFIS
Trigger: TGAGATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR CCA 90 bp TCATGGTCTTTACTTTCCAGCAAAGAAAAGGATGCTTCTTTGTCTTaGAAAACTGGAGAAAGGCTAGAGAGTTCGCCATTTGCAACAAGT +
Preference number: 1 (lower is better)
Translates to: SWSLLSSKEKDASLS*KTGERLESSPFATS
Trigger: ACTTGTTGCAAATGGCGAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTGGAAAGTAAAGACCATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 90 bp TCTTCATCAGAGAAAGACCTCCTGACTTTGGGTTGCAGCATATCTTaGGTGATTTTATTCCTTGCATCCATACTTCTCACATCTTCTTCA +
Preference number: 1 (lower is better)
Translates to: SSSEKDLLTLGCSIS*VILFLASILLTSSS
Trigger: TGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGGTCTTTCTCTGATGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 90 bp TATTTTCCTTATTGGCTTCAAGGGAGTCTTGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGAGGTATGCCACATTGTGTTCTGGCT +
Preference number: 1 (lower is better)
Translates to: YFPYWLQGSLELSSV*HLKIHRGMPHCVLA
Trigger: AGCCAGAACACAATGTGGCATACCTCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTCAAGACTCCCTTGAAGCCAATAAGGAAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 90 bp GAAGGATATATTTACAGATCTATTTCACAAAGTTGTACTGAGAACTaGCTGATATCCATCATCAAGCATCCAGAAGAGCAACTGCACAAA +
Preference number: 1 (lower is better)
Translates to: EGYIYRSISQSCTEN*LISIIKHPEEQLHK
Trigger: TTTGTGCAGTTGCTCTTCTGGATGCTTGATGATGGATATCAGTCAGTTCTCAGTACAACTTTGTGAAATAGATCTGTAAATATATCCTTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200038.2
3UTR-3UTR CCA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACTAGAAGGCTGGTGTaGCCAGGAGGCCTCCCAGGT +
Preference number: 2 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWTRRLV*PGGLPG
Trigger: ACCTGGGAGGCCTCCTGGCCACACCAGCCTTCTAGT...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
3UTR-3UTR GCA 90 bp GGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATAGCAGCCAGTCCTCGTaGAGCCCCAGTACAGGTGGC +
Preference number: 2 (lower is better)
Translates to: GQEASQVTGARGVCVTDDSSQSS*SPSTGG
Trigger: GCCACCTGTACTGGGGCTGCACGAGGACTGGCTGCT...ATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAAATCCACACCCCAGTaGCTGACCAGAACCCCCAGT +
Preference number: 2 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSKSTPQ*LTRTPS
Trigger: ACTGGGGGTTCTGGTCAGGCACTGGGGTGTGGATTT...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
3UTR-3UTR GCA 90 bp AGGGGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGGCTGAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTC +
Preference number: 2 (lower is better)
Translates to: RGDAGILLPFSSPVRHRLRMLLP*RGQLWL
Trigger: GAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCT...CAGCCTATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp CTGCTGAGGGGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTC +
Preference number: 2 (lower is better)
Translates to: LLRGDAGILLPFSSPVRHRMLLP*RGQLWL
Trigger: GAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCT...ATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCCCCTCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 90 bp CAAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTaGCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGT +
Preference number: 2 (lower is better)
Translates to: QRPCQSGAIWSFSRE*LSGTGGLRAQPALG
Trigger: ACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp GGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGGCTGGAAAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTC +
Preference number: 2 (lower is better)
Translates to: GDAGILLPFSSPVRHRLERMLLP*RGQLWL
Trigger: GAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCT...TTCCAGCCTATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAAGGCCCTGTCAGTCTaGAGCCATCTGGAGTTTCAG +
Preference number: 2 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSKALSV*SHLEFQ
Trigger: CTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTT...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCGTTTCAGCAGGGAGTTaGTCTCAGGGACTGGAGGGC +
Preference number: 2 (lower is better)
Translates to: KLADVEGASPPRASVAPSVSAGS*SQGLEG
Trigger: GCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAAC...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR CAA 90 bp TGGCATGGCTTCCTTGAAGAGGGCACATGTAATCCGGGGCTGCTGTaGGCAAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCA +
Preference number: 2 (lower is better)
Translates to: WHGFLEEGTCNPGLL*ASWQMLKVPPHQGP
Trigger: TGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGCCAACAGCAGCCCCGGATTACATGTGCCCTCTTCAAGGAAGCCATGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR-3UTR TCA 90 bp AGTACAGGTGGCAGAAGGGCTGCAGGCACACCGCACACTGCTGAGGGGCGACGCTGGCTGACTGATATCTaGGGATTCACTGTCGACATC +
Preference number: 2 (lower is better)
Translates to: STGGRRAAGTPHTAEGRRWLTDI*GFTVDI
Trigger: GATGTCGACAGTGAATCCTCAGATATCAGTCAGCCA...GCGTCGCCCCTCAGCAGTGTGCGGTGTGCCTGCAGCCCTTCTGCCACCTGTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGGCTGGAACAGAACCCCCAGTGCTaGGTAGGGAAAACTGTAAAA +
Preference number: 2 (lower is better)
Translates to: GDAGILLPFSSPVRHRLEQNPQC*VGKTVK
Trigger: TTTTACAGTTTTCCCTACGCAGCACTGGGGGTTCTG...TTCCAGCCTATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp CTGCTGAGGGGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATATTCAGGACACTGTCTaGAGACAATGTATGGCTGAC +
Preference number: 2 (lower is better)
Translates to: LLRGDAGILLPFSSPVRHIQDTV*RQCMAD
Trigger: GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAAT...ATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCCCCTCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp TTGAGCTCACAGAATGGGGCCAAGCAGCCAAAGCAGCCAGTCCTCGTGCAGCCCCGGTCAGGCATAGGCTaGAAGCAGCAGGTGCATATG +
Preference number: 2 (lower is better)
Translates to: LSSQNGAKQPKQPVLVQPRSGIG*KQQVHM
Trigger: CATATGCACCTGCTGCTTCCAGCCTATGCCTGACCG...GGGCTGCACGAGGACTGGCTGCTTTGGCTGCTTGGCCCCATTCTGTGAGCTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 90 bp GTCAGGCATAGGCTGGAAGCAGCAGGTGCATATGGCATGGCTTCCTaGAAGAGGGCACATGTAATCCGGGGCTGCTGTTGGCAAGCTGGC +
Preference number: 2 (lower is better)
Translates to: VRHRLEAAGAYGMAS*KRAHVIRGCCWQAG
Trigger: GCCAGCTTGCCAACAGCAGCCCCGGATTACATGTGCCCTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGCCTATGCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp GGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGGCTGGAAACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCA +
Preference number: 2 (lower is better)
Translates to: GDAGILLPFSSPVRHRLETKVQT*TVTASA
Trigger: TGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT...TTCCAGCCTATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CAA 90 bp ATATGGCATGGCTTCCTTGAAGAGGGCACATGTAATCCGGGGCTGTaGGCAAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCA +
Preference number: 2 (lower is better)
Translates to: IWHGFLEEGTCNPGL*ASWQMLKVPPHQGP
Trigger: TGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGCCAACAGCCCCGGATTACATGTGCCCTCTTCAAGGAAGCCATGCCATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 90 bp GTCAGGCATAGGCTGGAAGCAGCAGGTGCATATGGCATGGCTTCCTaGAAGAGGGCACATGTAATCCGGGGCTGTTGGCAAGCTGGCAGA +
Preference number: 2 (lower is better)
Translates to: VRHRLEAAGAYGMAS*KRAHVIRGCWQAGR
Trigger: TCTGCCAGCTTGCCAACAGCCCCGGATTACATGTGCCCTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGCCTATGCCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp GGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGGCTGGAATCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTT +
Preference number: 2 (lower is better)
Translates to: GDAGILLPFSSPVRHRLESQRHL*HLHLRF
Trigger: AAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGA...TTCCAGCCTATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp AGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCACAAACACAGAGTACTaGCTCTCAGTCTGTATCAAG +
Preference number: 2 (lower is better)
Translates to: RDWRAKGSASPGSRTWTLTNTEY*LSVCIK
Trigger: CTTGATACAGACTGAGAGGCAGTACTCTGTGTTTGT...GAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp GTTGGCAAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTGTCCTTTTGGGGAGATaGTTGTGTTCCCAGGTCCAG +
Preference number: 2 (lower is better)
Translates to: VGKLADVEGASPPRASVAVLLGR*LCSQVQ
Trigger: CTGGACCTGGGAACACAAGCATCTCCCCAAAAGGAC...AGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCATCACATCTTCTTCACTaGGACTTTTATCTGGGTGCT +
Preference number: 2 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSSHLLH*DFYLGA
Trigger: AGCACCCAGATAAAAGTCGCAGTGAAGAAGATGTGA...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR-3UTR CCA 90 bp CTGCTGAGGGGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATTTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTC +
Preference number: 2 (lower is better)
Translates to: LLRGDAGILLPFSSPVRHFVLEN*RKAREF
Trigger: GAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAA...ATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCCCCTCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCACTTTTATCTGGGTGCTaGATAAGGTATGCTTCCACT +
Preference number: 2 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSLLSGC*IRYAST
Trigger: AGTGGAAGCATACCTTATCCAGCACCCAGATAAAAG...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR CAA 90 bp TGGGGAGATGCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTaGCCCTGCAGAGGTCAGCTCTGGCTCCGTAGAAGAGGTAGAGGC +
Preference number: 2 (lower is better)
Translates to: WGDACVPRSRARRML*PCRGQLWLRRRGRG
Trigger: GCCTCTACCTCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGCATCTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCCAGAGAAAGACCTCCTaGCTTTGGGTTGCAGCATAT +
Preference number: 2 (lower is better)
Translates to: KLADVEGASPPRASVAPSQRKTS*LWVAAY
Trigger: ATATGCTGCAACCCAAAGTCAGGAGGTCTTTCTCTG...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACCAGAACCCCCAGTGCTaGGTAGGGAAAACTGTAAAA +
Preference number: 2 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHQNPQC*VGKTVK
Trigger: TTTTACAGTTTTCCCTACGCAGCACTGGGGGTTCTG...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp CTGCTGAGGGGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATTCACATCTTCTTCACTaGGACTTTTATCTCACACAA +
Preference number: 2 (lower is better)
Translates to: LLRGDAGILLPFSSPVRHSHLLH*DFYLTQ
Trigger: TTGTGTGAGATAAAAGTCGCAGTGAAGAAGATGTGA...ATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCCCCTCAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GCACCGCTTGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTGACACTAGAAGGCTGGTGTaGCCAGGAGGCCTCCCAGGT +
Preference number: 2 (lower is better)
Translates to: APLAFCIQDTVCRQCMADTRRLV*PGGLPG
Trigger: ACCTGGGAGGCCTCCTGGCCACACCAGCCTTCTAGT...GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCAGCATGTCTGAGCCATaGGTGACAATAGTGGAACCT +
Preference number: 2 (lower is better)
Translates to: KLADVEGASPPRASVAPSSMSEP*VTIVEP
Trigger: AGGTTCCACTATTGTCACCCATGGCTCAGACATGCT...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp AAGGGCCAGTGTAGCTCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGTCTTCACTTGAGGTTTaGGCATTTCCACGCTGGCCT +
Preference number: 2 (lower is better)
Translates to: KGQCSSQLTLWDWARKRLSSLEV*AFPRWP
Trigger: AGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGA...CAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 90 bp TCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGCACCGCTaGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTG +
Preference number: 2 (lower is better)
Translates to: SQLTLWDWARKRLHR*PSVFRTLSADNVWL
Trigger: CAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTACTTGTCCCCCAGGTTaGGCTCACAGAATGGGGCCA +
Preference number: 2 (lower is better)
Translates to: CTPGGCKRMLPFLPENASTCPPG*AHRMGP
Trigger: TGGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGT...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGACCAGAACCCCCAGTaGTGCGTAGGGAAAACTGTA +
Preference number: 2 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQDQNPQ*CVGKTV
Trigger: TACAGTTTTCCCTACGCAGCACTGGGGGTTCTGGTC...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGACCAGAACCCCCAGTaGTGCGTAGGGAAAACTGTA +
Preference number: 2 (lower is better)
Translates to: KVQTCTVTASAHRRESGPDQNPQ*CVGKTV
Trigger: TACAGTTTTCCCTACGCAGCACTGGGGGTTCTGGTC...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCA +
Preference number: 2 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFTKVQT*TVTASA
Trigger: TGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
3UTR-3UTR GCA 90 bp AAGGGCCAGTGTAGCTCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGCTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCT +
Preference number: 2 (lower is better)
Translates to: KGQCSSQLTLWDWARKRLLEECF*PAEVSS
Trigger: AGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAG...CAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GCTGTTGGCAAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTATTGCAACAAGTGAACTaGGTCCTTTTGGGGAGATGC +
Preference number: 2 (lower is better)
Translates to: AVGKLADVEGASPPRASVLQQVN*VLLGRC
Trigger: GCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAA...TACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGCCAACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCTGCCACATTGTGTTCTaGCTCATTCTTCCTGTACAC +
Preference number: 2 (lower is better)
Translates to: KLADVEGASPPRASVAPSCHIVF*LILPVH
Trigger: GTGTACAGGAAGAATGAGCCAGAACACAATGTGGCA...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp AGTACAGGTGGCAGAAGGGCTGCAGGCACACCGCACACTGCTGAGGGGCGACGCGACCTGAGCAATCTTTaGTCACATGGAACATATTTT +
Preference number: 2 (lower is better)
Translates to: STGGRRAAGTPHTAEGRRDLSNL*SHGTYF
Trigger: AAAATATGTTCCATGTGACCAAAGATTGCTCAGGTC...GCGTCGCCCCTCAGCAGTGTGCGGTGTGCCTGCAGCCCTTCTGCCACCTGTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTAAATCCACACCCCAGTaGCTGACCAGAACCCCCAGT +
Preference number: 2 (lower is better)
Translates to: CTPGGCKRMLPFLPENASKSTPQ*LTRTPS
Trigger: ACTGGGGGTTCTGGTCAGGCACTGGGGTGTGGATTT...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCTCACATCTTCTTCACTaGGACTTTTATCTGGGTGCT +
Preference number: 2 (lower is better)
Translates to: KLADVEGASPPRASVAPSSHLLH*DFYLGA
Trigger: AGCACCCAGATAAAAGTCGCAGTGAAGAAGATGTGA...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp AAGGGCCAGTGTAGCTCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGTCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTT +
Preference number: 2 (lower is better)
Translates to: KGQCSSQLTLWDWARKRLSQRHL*HLHLRF
Trigger: AAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGA...CAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp CGCTGGCCTGAAACTAATAACTGGAGGTTCGTGTCAAGTTCCCCATCTCCTTTCAAATCCACACCCCAGTaGCTGACCAGAACCCCCAGT +
Preference number: 2 (lower is better)
Translates to: RWPETNNWRFVSSSPSPFKSTPQ*LTRTPS
Trigger: ACTGGGGGTTCTGGTCAGGCACTGGGGTGTGGATTT...GAAAGGAGATGGGGAACTTGACACGAACCTCCAGTTATTAGTTTCAGGCCAGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCA +
Preference number: 2 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGTKVQT*TVTASA
Trigger: TGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GCACCGCTTGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTGACGTCCTTTTGGGGAGATaGTTGTGTTCCCAGGTCCAG +
Preference number: 2 (lower is better)
Translates to: APLAFCIQDTVCRQCMADVLLGR*LCSQVQ
Trigger: CTGGACCTGGGAACACAAGCATCTCCCCAAAAGGAC...GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGACTAGAAGGCTGGTGTaGCCAGGAGGCCTCCCAGGT +
Preference number: 2 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRTRRLV*PGGLPG
Trigger: ACCTGGGAGGCCTCCTGGCCACACCAGCCTTCTAGT...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGGGATGTTACAGTCACTaGCAACTCAGAAGCAGGAAT +
Preference number: 2 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGGCYSH*QLRSRN
Trigger: ATTCCTGCTTCTGAGTTGCCAGTGACTGTAACATCC...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp CAGTGTAGCTCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGCACCGCTTCACAAAGTTGTACTaGGAACTGACTGATATCCAT +
Preference number: 2 (lower is better)
Translates to: QCSSQLTLWDWARKRLHRFTKLY*ELTDIH
Trigger: ATGGATATCAGTCAGTTCTCAGTACAACTTTGTGAA...GCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCA +
Preference number: 2 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQTKVQT*TVTASA
Trigger: TGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp AGGCTGGAAGCAGCAGGTGCATATGGCATGGCTTCCTTGAAGAGGGCACATGTATCACTGTTCCATTGGTaGTGGTGTCTTCCAGTGTCA +
Preference number: 2 (lower is better)
Translates to: RLEAAGAYGMASLKRAHVSLFHW*WCLPVS
Trigger: TGACACTGGAAGACACCAGCACCAATGGAACAGTGA...TACATGTGCCCTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCAGCCCCAGTACAGGTaGCAGAAGGGCTGCAGGCAC +
Preference number: 2 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQQPQYR*QKGCRH
Trigger: GTGCCTGCAGCCCTTCTGCCACCTGTACTGGGGCTG...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CAA 90 bp CAGGTTAGTGTCTCCTCCATCTTGTCTGGCTTCACAGAGGCATCTTaGACATCTTCACTTGAGGTTTGGGCATTTCCACGCTGGCCTGAA +
Preference number: 2 (lower is better)
Translates to: QVSVSSILSGFTEAS*TSSLEVWAFPRWPE
Trigger: TTCAGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACTAACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 90 bp TGCTGGATAAGGTATGCTTCCACTAGGTTGTTCAGGATGTGGTTTTaGCAAATCCGCTCCACTGGACATCGGCAGGTAGGGCACAGAGAT +
Preference number: 2 (lower is better)
Translates to: CWIRYASTRLFRMWF*QIRSTGHRQVGHRD
Trigger: ATCTCTGTGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAACAACCTAGTGGAAGCATACCTTATCCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGCAACTTGCAGCTTATTaGTCACTGTTCCATTGGTGC +
Preference number: 2 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEQLAAY*SLFHWC
Trigger: GCACCAATGGAACAGTGATCAATAAGCTGCAAGTTG...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAAATCCACACCCCAGTaGCTGACCAGAACCCCCAGT +
Preference number: 2 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRKSTPQ*LTRTPS
Trigger: ACTGGGGGTTCTGGTCAGGCACTGGGGTGTGGATTT...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GCACCGCTTGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTGACCTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCT +
Preference number: 2 (lower is better)
Translates to: APLAFCIQDTVCRQCMADLEECF*PAEVSS
Trigger: AGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAG...GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GCACCGCTTGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTGACTATCTCACACAATCGTaGAGAAGGTCCTGGCAGATG +
Preference number: 2 (lower is better)
Translates to: APLAFCIQDTVCRQCMADYLTQS*RRSWQM
Trigger: CATCTGCCAGGACCTTCTGCACGATTGTGTGAGATA...GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACACCGACTAGAAGGCTaGTGTGGCCAGGAGGCCTCC +
Preference number: 2 (lower is better)
Translates to: DTADNFSYELPILTIVKVHRLEG*CGQEAS
Trigger: GGAGGCCTCCTGGCCACACCAGCCTTCTAGTCGGTG...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp AAGGGCCAGTGTAGCTCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGACATATTTTCCTTATTaGCTTCAAGGGAGTCTTGAG +
Preference number: 2 (lower is better)
Translates to: KGQCSSQLTLWDWARKRLTYFPY*LQGSLE
Trigger: CTCAAGACTCCCTTGAAGCCAATAAGGAAAATATGT...CAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp CCACGCTGGCCTGAAACTAATAACTGGAGGTTCGTGTCAAGTTCCCCATCTCCTAGCATGTCTGAGCCATaGGTGACAATAGTGGAACCT +
Preference number: 2 (lower is better)
Translates to: PRWPETNNWRFVSSSPSPSMSEP*VTIVEP
Trigger: AGGTTCCACTATTGTCACCCATGGCTCAGACATGCT...AGGAGATGGGGAACTTGACACGAACCTCCAGTTATTAGTTTCAGGCCAGCGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp TATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGCTCACTCTCTGGGACTaGGCAAGGAAGAGACTGCAC +
Preference number: 2 (lower is better)
Translates to: YTKGCVFPDRRLSYVPLELTLWD*ARKRLH
Trigger: GTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAG...CTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp GGAGACTCTCTGTCAACACACTTTTCCATGTCAGACCCCTGGTTGCCAGGTAATAGCAGCAGGTGCATATaGCATGGCTTCCTTGAAGAG +
Preference number: 2 (lower is better)
Translates to: GDSLSTHFSMSDPWLPGNSSRCI*HGFLEE
Trigger: CTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCT...ATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGAGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CAA 90 bp AGTGGAACCTGGGGATCATCACCCTGCCCTGGACCTGAGCAATCTTaGGTCACATGGAACATATTTTCCTTATTGGCTTCAAGGGAGTCT +
Preference number: 2 (lower is better)
Translates to: SGTWGSSPCPGPEQS*VTWNIFSLLASRES
Trigger: AGACTCCCTTGAAGCCAATAAGGAAAATATGTTCCATGTGACCAAAGATTGCTCAGGTCCAGGGCAGGGTGATGATCCCCAGGTTCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 90 bp CTGCGACTTTTATCTGGGTGCTGGATAAGGTATGCTTCCACTAGGTaGTTCAGGATGTGGTTTTTGCAAATCCGCTCCACTGGACATCGG +
Preference number: 2 (lower is better)
Translates to: LRLLSGCWIRYASTR*FRMWFLQIRSTGHR
Trigger: CCGATGTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAACAACCTAGTGGAAGCATACCTTATCCAGCACCCAGATAAAAGTCGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp GGAGGTCTGATGTCGATGTTGATGGCTGTGGTTCCTCTAAGCATGTCTGAGCCACAACTTGCAGCTTATTaGTCACTGTTCCATTGGTGC +
Preference number: 2 (lower is better)
Translates to: GGLMSMLMAVVPLSMSEPQLAAY*SLFHWC
Trigger: GCACCAATGGAACAGTGATCAATAAGCTGCAAGTTG...TGGCTCAGACATGCTTAGAGGAACCACAGCCATCAACATCGACATCAGACCTCC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTTCACTGTTCCATTGGTaGTGGTGTCTTCCAGTGTCA +
Preference number: 2 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRSLFHW*WCLPVS
Trigger: TGACACTGGAAGACACCAGCACCAATGGAACAGTGA...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAACTAGAAGGCTGGTGTaGCCAGGAGGCCTCCCAGGT +
Preference number: 2 (lower is better)
Translates to: NASDTADNFSYELPILTITRRLV*PGGLPG
Trigger: ACCTGGGAGGCCTCCTGGCCACACCAGCCTTCTAGT...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR CAA 90 bp TGCAGAAGGTCCTGGCAGATGATACAGGTTAGTGTCTCCTCCATCTaGTCTGGCTTCACAGAGGCATCTTTGACATCTTCACTTGAGGTT +
Preference number: 2 (lower is better)
Translates to: CRRSWQMIQVSVSSI*SGFTEASLTSSLEV
Trigger: AACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GACAGCATAAATACACCTCGCTGCAGAGCCAGGAGACTCTCTGTCAACACACTTCGACTTTTATCTGGGTaGTGGATAAGGTATGCTTCC +
Preference number: 2 (lower is better)
Translates to: DSINTPRCRARRLSVNTLRLLSG*WIRYAS
Trigger: GGAAGCATACCTTATCCAGCACCCAGATAAAAGTCG...AAGTGTGTTGACAGAGAGTCTCCTGGCTCTGCAGCGAGGTGTATTTATGCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACCAGTCTGGAGCCATCTaGAGTTTCAGCAGGGAGTTG +
Preference number: 2 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHQSGAI*SFSREL
Trigger: CAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTG...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR CCA 90 bp TTGATGGCTGTGGTTCCTCTAAGCATGTCTGAGCCATGGGTGACAATAGTGGAAAGACCAGTTTATTGCTaGGGAAAGAGAGGTCACAGC +
Preference number: 2 (lower is better)
Translates to: LMAVVPLSMSEPWVTIVERPVYC*GKRGHS
Trigger: GCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCT...TTCCACTATTGTCACCCATGGCTCAGACATGCTTAGAGGAACCACAGCCATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GGAGACTCTCTGTCAACACACTTTTCCATGTCAGACCCCTGGTTGCCAGGTAATTGCCACATTGTGTTCTaGCTCATTCTTCCTGTACAC +
Preference number: 2 (lower is better)
Translates to: GDSLSTHFSMSDPWLPGNCHIVF*LILPVH
Trigger: GTGTACAGGAAGAATGAGCCAGAACACAATGTGGCA...ATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGAGTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp TATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGAGCAGCAGGTGCATATaGCATGGCTTCCTTGAAGAG +
Preference number: 2 (lower is better)
Translates to: YTKGCVFPDRRLSYVPLESSRCI*HGFLEE
Trigger: CTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCT...CTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp AGGATTCACTGTCGACATCAGACAGCTCTAGCAGGTCCTCTGAACTCCCCTCTTGCAGCATATCTTGAGTaGTTTTATTCCTTGCATCCA +
Preference number: 2 (lower is better)
Translates to: RIHCRHQTALAGPLNSPLAAYLE*FYSLHP
Trigger: TGGATGCAAGGAATAAAATCACTCAAGATATGCTGC...AAGAGGGGAGTTCAGAGGACCTGCTAGAGCTGTCTGATGTCGACAGTGAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp AGGATTCACTGTCGACATCAGACAGCTCTAGCAGGTCCTCTGAACTCCCCTCTTGGTTGCAGCATATCTTaGGTGATTTTATTCCTTGCA +
Preference number: 2 (lower is better)
Translates to: RIHCRHQTALAGPLNSPLGCSIS*VILFLA
Trigger: TGCAAGGAATAAAATCACTCAAGATATGCTGCAACC...AAGAGGGGAGTTCAGAGGACCTGCTAGAGCTGTCTGATGTCGACAGTGAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp TATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGCAGAACCCCCAGTGCTaGGTAGGGAAAACTGTAAAA +
Preference number: 2 (lower is better)
Translates to: YTKGCVFPDRRLSYVPLEQNPQC*VGKTVK
Trigger: TTTTACAGTTTTCCCTACGCAGCACTGGGGGTTCTG...CTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGGACCAGAACCCCCAGTaGTGCGTAGGGAAAACTGTA +
Preference number: 2 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQDQNPQ*CVGKTV
Trigger: TACAGTTTTCCCTACGCAGCACTGGGGGTTCTGGTC...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp ACCTGGGGATCATCACCCTGCCCTGGACCTGAGCAATCTTTGGTCACATGGAACTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 2 (lower is better)
Translates to: TWGSSPCPGPEQSLVTWNCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...GTTCCATGTGACCAAAGATTGCTCAGGTCCAGGGCAGGGTGATGATCCCCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp ACATCTTCACTTGAGGTTTGGGCATTTCCACGCTGGCCTGAAACTAATAACTGGAGACCAGTTTATTGCTaGGGAAAGAGAGGTCACAGC +
Preference number: 2 (lower is better)
Translates to: TSSLEVWAFPRWPETNNWRPVYC*GKRGHS
Trigger: GCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCT...CCAGTTATTAGTTTCAGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp TCCTCTGAACTCCCCTCTTCATCAGAGAAAGACCTCCTGACTTTGGGTTGCAGCTTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTC +
Preference number: 2 (lower is better)
Translates to: SSELPSSSEKDLLTLGCSFVLEN*RKAREF
Trigger: GAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAA...GCTGCAACCCAAAGTCAGGAGGTCTTTCTCTGATGAAGAGGGGAGTTCAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GGATGTCCGATTCATAATTGTTATTGTTCAGCACTCCATCCAAGCACTTGTCCCTCTTCACTTGAGGTTTaGGCATTTCCACGCTGGCCT +
Preference number: 2 (lower is better)
Translates to: GCPIHNCYCSALHPSTCPSSLEV*AFPRWP
Trigger: AGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGA...GGGACAAGTGCTTGGATGGAGTGCTGAACAATAACAATTATGAATCGGACATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp TATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGCTCCTCCATCTTGTCTaGCTTCACAGAGGCATCTTT +
Preference number: 2 (lower is better)
Translates to: YTKGCVFPDRRLSYVPLELLHLV*LHRGIF
Trigger: AAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAG...CTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp ACTGTTTCACGTGTCTCTTCCAATATTCAGTTCTTGAACCTTGTTTGCTCACAGGGGCTGTTGGCAAGCTaGCAGATGTTGAAGGTGCCT +
Preference number: 2 (lower is better)
Translates to: TVSRVSSNIQFLNLVCSQGLLAS*QMLKVP
Trigger: AGGCACCTTCAACATCTGCCAGCTTGCCAACAGCCC...CTGTGAGCAAACAAGGTTCAAGAACTGAATATTGGAAGAGACACGTGAAACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp ACATCTTCACTTGAGGTTTGGGCATTTCCACGCTGGCCTGAAACTAATAACTGGCAACTTGCAGCTTATTaGTCACTGTTCCATTGGTGC +
Preference number: 2 (lower is better)
Translates to: TSSLEVWAFPRWPETNNWQLAAY*SLFHWC
Trigger: GCACCAATGGAACAGTGATCAATAAGCTGCAAGTTG...CCAGTTATTAGTTTCAGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCT +
Preference number: 2 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQEGPGR*YRLVSP
Trigger: AGGAGACACTAACCTGTATCATCTGCCAGGACCTTC...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GGATGTCCGATTCATAATTGTTATTGTTCAGCACTCCATCCAAGCACTTGTCCCCTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCT +
Preference number: 2 (lower is better)
Translates to: GCPIHNCYCSALHPSTCPLEECF*PAEVSS
Trigger: AGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAG...GGGACAAGTGCTTGGATGGAGTGCTGAACAATAACAATTATGAATCGGACATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCCAGAGCTAGAAGAATaGTTTTGCCCTGCAGAGGTC +
Preference number: 2 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQPELEE*FCPAEV
Trigger: GACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGG...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACGTGTGCATACAAGGCTaGAAACTCACACAATCGTGC +
Preference number: 2 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHVCIQG*KLTQSC
Trigger: GCACGATTGTGTGAGTTTGCAGCCTTGTATGCACAC...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAAAGGCCCTGTCAGTCTaGAGCCATCTGGAGTTTCAG +
Preference number: 2 (lower is better)
Translates to: NASDTADNFSYELPILTIKALSV*SHLEFQ
Trigger: CTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTT...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR CCA 90 bp GAGATGCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTGCCCTGCAGAGACATATTTTCCTTATTaGCTTCAAGGGAGTCTTGAG +
Preference number: 2 (lower is better)
Translates to: EMLVFPGPELEECFCPAETYFPY*LQGSLE
Trigger: CTCAAGACTCCCTTGAAGCCAATAAGGAAAATATGT...CTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGCATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp TGTCGACATCAGACAGCTCTAGCAGGTCCTCTGAACTCCCCTCTTCATCAGAGAGACCTGAGCAATCTTTaGTCACATGGAACATATTTT +
Preference number: 2 (lower is better)
Translates to: CRHQTALAGPLNSPLHQRDLSNL*SHGTYF
Trigger: AAAATATGTTCCATGTGACCAAAGATTGCTCAGGTC...TCTCTGATGAAGAGGGGAGTTCAGAGGACCTGCTAGAGCTGTCTGATGTCGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp CGCTGGCCTGAAACTAATAACTGGAGGTTCGTGTCAAGTTCCCCATCTCCTTTCTTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTC +
Preference number: 2 (lower is better)
Translates to: RWPETNNWRFVSSSPSPFFVLEN*RKAREF
Trigger: GAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAA...GAAAGGAGATGGGGAACTTGACACGAACCTCCAGTTATTAGTTTCAGGCCAGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp GAGATGAACGCTCCATCCAACCAGAGTAGCAAGCCGCACAAAATGTGTGCATACGATGCTTCTTTGTCTTaGAAAACTGGAGAAAGGCTA +
Preference number: 2 (lower is better)
Translates to: EMNAPSNQSSKPHKMCAYDASLS*KTGERL
Trigger: TAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATC...GTATGCACACATTTTGTGCGGCTTGCTACTCTGGTTGGATGGAGCGTTCATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CAA 90 bp CCAGGAGACTCTCTGTCAACACACTTTTCCATGTCAGACCCCTGGTaGCCAGGTAATTCTTCAGGATGTCCGATTCATAATTGTTATTGT +
Preference number: 2 (lower is better)
Translates to: PGDSLSTHFSMSDPW*PGNSSGCPIHNCYC
Trigger: ACAATAACAATTATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGAGTCTCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp TATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGACAAACACAGAGTACTaGCTCTCAGTCTGTATCAAG +
Preference number: 2 (lower is better)
Translates to: YTKGCVFPDRRLSYVPLETNTEY*LSVCIK
Trigger: CTTGATACAGACTGAGAGGCAGTACTCTGTGTTTGT...CTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR GCA 90 bp TGCTTCTTAACAACTTGCAGCTTATTGATCACTGTTCCATTGGTGCTGGTGTCTTCACTGTTCCATTGGTaGTGGTGTCTTCCAGTGTCA +
Preference number: 2 (lower is better)
Translates to: CFLTTCSLLITVPLVLVSSLFHW*WCLPVS
Trigger: TGACACTGGAAGACACCAGCACCAATGGAACAGTGA...AGACACCAGCACCAATGGAACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GGTCTGATGTCGATGTTGATGGCTGTGGTTCCTCTAAGCATGTCTGAGCCATGGTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 2 (lower is better)
Translates to: GLMSMLMAVVPLSMSEPWCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...CCATGGCTCAGACATGCTTAGAGGAACCACAGCCATCAACATCGACATCAGACC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp GCACCGCTTGCCTTCTGTATTCAGGACACTGTCTGCAGACAATGTATGGCTGACGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGA +
Preference number: 2 (lower is better)
Translates to: APLAFCIQDTVCRQCMADELSSV*HLKIHR
Trigger: TCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTC...GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp TCGACATCAGACAGCTCTAGCAGGTCCTCTGAACTCCCCTCTTCATCAGAGAAACAGCAAAGAAAAGGATaGTTCTTTGTCTTGGAAAAC +
Preference number: 2 (lower is better)
Translates to: STSDSSSRSSELPSSSEKQQRKG*FFVLEN
Trigger: GTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTG...TTTCTCTGATGAAGAGGGGAGTTCAGAGGACCTGCTAGAGCTGTCTGATGTCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CCA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTACCAGATGAGGGCTTaGAAAGCAAAGGCCCTGTCA +
Preference number: 2 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPYQMRA*KAKALS
Trigger: TGACAGGGCCTTTGCTTTCCAAGCCCTCATCTGGTA...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR CCA 90 bp TGCTTCTTAACAACTTGCAGCTTATTGATCACTGTTCCATTGGTGCTGGTGTCTAGACCAGTTTATTGCTaGGGAAAGAGAGGTCACAGC +
Preference number: 2 (lower is better)
Translates to: CFLTTCSLLITVPLVLVSRPVYC*GKRGHS
Trigger: GCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCT...AGACACCAGCACCAATGGAACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp CTTCACTGCGACTTTTATCTCACACAATCGTGCAGAAGGTCCTGGCAGATGATAACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTA +
Preference number: 2 (lower is better)
Translates to: LHCDFYLTQSCRRSWQMITVSLQ*SPETSL
Trigger: TAAACTGGTCTCTGGAGATCACTGTAAACTTACAGT...TATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGATAAAAGTCGCAGTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGTTTGACATCTTCACTTaGGGTTTGGGCATTTCCACG +
Preference number: 2 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQFDIFT*GLGIST
Trigger: CGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAA...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATACAGAACCCCCAGTGCTaGGTAGGGAAAACTGTAAAA +
Preference number: 2 (lower is better)
Translates to: NASDTADNFSYELPILTIQNPQC*VGKTVK
Trigger: TTTTACAGTTTTCCCTACGCAGCACTGGGGGTTCTG...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp TACTTTCCAGCAAAGAAAAGGATGCTTCTTTGTCTTGGAAAACTGGAGAAAGGCCAGAACCCCCAGTGCTaGGTAGGGAAAACTGTAAAA +
Preference number: 2 (lower is better)
Translates to: YFPAKKRMLLCLGKLEKGQNPQC*VGKTVK
Trigger: TTTTACAGTTTTCCCTACGCAGCACTGGGGGTTCTG...GCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTGGAAAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp TCTAGCAGGTCCTCTGAACTCCCCTCTTCATCAGAGAAAGACCTCCTGACTTTGTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 2 (lower is better)
Translates to: SSRSSELPSSSEKDLLTLCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...CAAAGTCAGGAGGTCTTTCTCTGATGAAGAGGGGAGTTCAGAGGACCTGCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAAAACTCACACAATCGTaGAGAAGGTCCTGGCAGATG +
Preference number: 2 (lower is better)
Translates to: NASDTADNFSYELPILTIKLTQS*RRSWQM
Trigger: CATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTT...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp GGATGTCCGATTCATAATTGTTATTGTTCAGCACTCCATCCAAGCACTTGTCCCCTTTTATCTGGGTGCTaGATAAGGTATGCTTCCACT +
Preference number: 2 (lower is better)
Translates to: GCPIHNCYCSALHPSTCPLLSGC*IRYAST
Trigger: AGTGGAAGCATACCTTATCCAGCACCCAGATAAAAG...GGGACAAGTGCTTGGATGGAGTGCTGAACAATAACAATTATGAATCGGACATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTAACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCA +
Preference number: 2 (lower is better)
Translates to: DTADNFSYELPILTIVKVTKVQT*TVTASA
Trigger: TGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp TTGAGGTTTGGGCATTTCCACGCTGGCCTGAAACTAATAACTGGAGGTTCGTGTTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 2 (lower is better)
Translates to: LRFGHFHAGLKLITGGSCCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...ACACGAACCTCCAGTTATTAGTTTCAGGCCAGCGTGGAAATGCCCAAACCTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp TGCTCTGTAACTGTTTCACGTGTCTCTTCCAATATTCAGTTCTTGAACCTTGTTTGTCAGACCCCTGGTTaGCAGGTAATTCTTCAGGAT +
Preference number: 2 (lower is better)
Translates to: CSVTVSRVSSNIQFLNLVCQTPG*QVILQD
Trigger: ATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACA...AACAAGGTTCAAGAACTGAATATTGGAAGAGACACGTGAAACAGTTACAGAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CCA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTTGCCACATTGTGTTCTaGCTCATTCTTCCTGTACAC +
Preference number: 2 (lower is better)
Translates to: ADNFSYELPILTIVKVQGCHIVF*LILPVH
Trigger: GTGTACAGGAAGAATGAGCCAGAACACAATGTGGCA...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GATTTTATTCCTTGCATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCTCAGGATGTGGTTTTTaGAAATCCGCTCCACTGGAC +
Preference number: 2 (lower is better)
Translates to: DFIPCIHTSHIFFTATFISGCGF*KSAPLD
Trigger: GTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGA...GATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CAA 90 bp AACTGTTTCACGTGTCTCTTCCAATATTCAGTTCTTGAACCTTGTTaGCTCACAGATGTGATTGAATTTCATTGCATGGTGAGCCTTCAC +
Preference number: 2 (lower is better)
Translates to: NCFTCLFQYSVLEPC*LTDVIEFHCMVSLH
Trigger: GTGAAGGCTCACCATGCAATGAAATTCAATCACATCTGTGAGCAAACAAGGTTCAAGAACTGAATATTGGAAGAGACACGTGAAACAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp TATTCCTTGCATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCTGGGTACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTA +
Preference number: 2 (lower is better)
Translates to: YSLHPYFSHLLHCDFYLGTVSLQ*SPETSL
Trigger: TAAACTGGTCTCTGGAGATCACTGTAAACTTACAGT...ACCCAGATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR TCA 90 bp GATTTTATTCCTTGCATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCTTTGACATCTTCACTTaGGGTTTGGGCATTTCCACG +
Preference number: 2 (lower is better)
Translates to: DFIPCIHTSHIFFTATFIFDIFT*GLGIST
Trigger: CGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAA...GATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR TCA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCGGTTGCAGCATATCTTaGGTGATTTTATTCCTTGCA +
Preference number: 2 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPGCSIS*VILFLA
Trigger: TGCAAGGAATAAAATCACTCAAGATATGCTGCAACC...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp TACTTTCCAGCAAAGAAAAGGATGCTTCTTTGTCTTGGAAAACTGGAGAAAGGCCAGCAAAGAAAAGGATaGTTCTTTGTCTTGGAAAAC +
Preference number: 2 (lower is better)
Translates to: YFPAKKRMLLCLGKLEKGQQRKG*FFVLEN
Trigger: GTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTG...GCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTGGAAAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR GCA 90 bp ACTGTTTCACGTGTCTCTTCCAATATTCAGTTCTTGAACCTTGTTTGCTCACAGGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGA +
Preference number: 2 (lower is better)
Translates to: TVSRVSSNIQFLNLVCSQELSSV*HLKIHR
Trigger: TCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTC...CTGTGAGCAAACAAGGTTCAAGAACTGAATATTGGAAGAGACACGTGAAACAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR GCA 90 bp GATTTTATTCCTTGCATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGA +
Preference number: 2 (lower is better)
Translates to: DFIPCIHTSHIFFTATFIELSSV*HLKIHR
Trigger: TCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTC...GATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGTTTCAGCAGGGAGTaGCTCTCAGGGACTGGAGGG +
Preference number: 3 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSSFSRE*LSGTGG
Trigger: CCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACT...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR CCA 72 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTaGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGG +
Preference number: 3 (lower is better)
Translates to: HLEFQQGVALRD*RAKGSASPGSR
Trigger: CCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR-3UTR CAA 90 bp CTGCTGAGGGGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATCCAGAGACCAGTTTATaGCTGGGGAAAGAGAGGTCA +
Preference number: 3 (lower is better)
Translates to: LLRGDAGILLPFSSPVRHPETSL*LGKERS
Trigger: TGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGG...ATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCCCCTCAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACCACTTGTCCCCCAGGTaGAGCTCACAGAATGGGGCC +
Preference number: 3 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHHLSPR*SSQNGA
Trigger: GGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGTG...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR TCA 72 bp GTAATCCGGGGCTGCTGTTGGCAAGCTGGCAGATGTTaGAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCC +
Preference number: 3 (lower is better)
Translates to: VIRGCCWQAGRC*RCLPTKGQCSS
Trigger: GGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGCCAACAGCAGCCCCGGATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR CCA 72 bp GAGGGCACATGTAATCCGGGGCTGCTGTTGGCAAGCTaGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCA +
Preference number: 3 (lower is better)
Translates to: EGTCNPGLLLAS*QMLKVPPHQGP
Trigger: TGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGCCAACAGCAGCCCCGGATTACATGTGCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR TCA 72 bp CCGCTCCACTGGACATCGGCAGGTAGGGCACAGAGATaGACGCTCCATCCAACCAGAGTAGCAAGCCGCACA +
Preference number: 3 (lower is better)
Translates to: PLHWTSAGRAQR*TLHPTRVASRT
Trigger: TGTGCGGCTTGCTACTCTGGTTGGATGGAGCGTTCATCTCTGTGCCCTACCTGCCGATGTCCAGTGGAGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CCA 72 bp TCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTaGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGG +
Preference number: 3 (lower is better)
Translates to: STDPLTPTRRLV*PGGLPGYWGTW
Trigger: CCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp GGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGCTAGAAGAATGCTTTaGCCCTGCAGAGGTCAGCTC +
Preference number: 3 (lower is better)
Translates to: GQEASQVTGARGVCVTDDARRML*PCRGQL
Trigger: GAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGC...ATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR CCA 72 bp GCTAGAAGAATGCTTTTGCCCTGCAGAGGTCAGCTCTaGCTCCGTAGAAGAGGTAGAGGCCGTGGGGAGGAG +
Preference number: 3 (lower is better)
Translates to: ARRMLLPCRGQL*LRRRGRGRGEE
Trigger: CTCCTCCCCACGGCCTCTACCTCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 72 bp AAGGGCCAGTGTAGCTCCCAGCTCACTCTCTGGGACTaGGCAAGGAAGAGACTGCACCGCTTGCCTTCTGTA +
Preference number: 3 (lower is better)
Translates to: KGQCSSQLTLWD*ARKRLHRLPSV
Trigger: TACAGAAGGCAAGCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTGGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp GGCGACGCGGGGATCCTGCTCCCGTTCAGCTCTCCGGTCAGGCATAGGCTGGAAGGACCTGAGCAATCTTaGGTCACATGGAACATATTT +
Preference number: 3 (lower is better)
Translates to: GDAGILLPFSSPVRHRLEGPEQS*VTWNIF
Trigger: AAATATGTTCCATGTGACCAAAGATTGCTCAGGTCC...TTCCAGCCTATGCCTGACCGGAGAGCTGAACGGGAGCAGGATCCCCGCGTCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCGGTCTGATGTCGATGTaGATGGCTGTGGTTCCTCTA +
Preference number: 3 (lower is better)
Translates to: KLADVEGASPPRASVAPSGLMSM*MAVVPL
Trigger: TAGAGGAACCACAGCCATCAACATCGACATCAGACC...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAGAGACTGCACCGCTaGCCTTCTGTATTCAGGACA +
Preference number: 3 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHKRLHR*PSVFRT
Trigger: TGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTT...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp AAGCTGGCAGATGTTGAAGGTGCCTCCCCACCAAGGGCCAGTGTAGCTCCCAGCTTGATCACTGTTCCATaGGTGCTGGTGTCTTCCAGT +
Preference number: 3 (lower is better)
Translates to: KLADVEGASPPRASVAPSLITVP*VLVSSS
Trigger: ACTGGAAGACACCAGCACCAATGGAACAGTGATCAA...GCTGGGAGCTACACTGGCCCTTGGTGGGGAGGCACCTTCAACATCTGCCAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 72 bp CTTGGAAAGCAAAGGCCCTGTCAGTCTGGAGCCATCTaGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGA +
Preference number: 3 (lower is better)
Translates to: LGKQRPCQSGAI*SFSRELLSGTG
Trigger: TCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTTGCTTTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR CCA 72 bp CAGATGAGGGCTTGGAAAGCAAAGGCCCTGTCAGTCTaGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTC +
Preference number: 3 (lower is better)
Translates to: QMRAWKAKALSV*SHLEFQQGVAL
Trigger: GAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTTGCTTTCCAAGCCCTCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR GCA 72 bp GTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTCCGTAGAAGAGGTAGA +
Preference number: 3 (lower is better)
Translates to: VPRSRARRMLLP*RGQLWLRRRGR
Trigger: TCTACCTCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 72 bp CTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCTGGCTCCGTAGAAGAG +
Preference number: 3 (lower is better)
Translates to: LVFPGPELEECF*PAEVSSGSVEE
Trigger: CTCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 72 bp CTCTCTGGGACTGGGCAAGGAAGAGACTGCACCGCTTaGCTTCTGTATTCAGGACACTGTCTGCAGACAATG +
Preference number: 3 (lower is better)
Translates to: LSGTGQGRDCTA*LLYSGHCLQTM
Trigger: CATTGTCTGCAGACAGTGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp CAGTGTAGCTCCCAGCTCACTCTCTGGGACTGGGCAAGGAAGAGACTGCACCGCTTCACAGAGGCATCTTaGACATCTTCACTTGAGGTT +
Preference number: 3 (lower is better)
Translates to: QCSSQLTLWDWARKRLHRFTEAS*TSSLEV
Trigger: AACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAA...GCGGTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAGCTGGGAGCTACACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp TCTAGCAGGTCCTCTGAACTCCCCTCTTCATCAGAGAAAGACCTCCTGACTTTGAGTGTCTCCTCCATCTaGTCTGGCTTCACAGAGGCA +
Preference number: 3 (lower is better)
Translates to: SSRSSELPSSSEKDLLTLSVSSI*SGFTEA
Trigger: TGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACT...CAAAGTCAGGAGGTCTTTCTCTGATGAAGAGGGGAGTTCAGAGGACCTGCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 72 bp GTCGATGTTGATGGCTGTGGTTCCTCTAAGCATGTCTaGGCCATGGGTGACAATAGTGGAACCTGGGGATCA +
Preference number: 3 (lower is better)
Translates to: VDVDGCGSSKHV*AMGDNSGTWGS
Trigger: TGATCCCCAGGTTCCACTATTGTCACCCATGGCTCAGACATGCTTAGAGGAACCACAGCCATCAACATCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 72 bp GATGACATGGCAAACCTAATGTACCAGATGAGGGCTTaGAAAGCAAAGGCCCTGTCAGTCTGGAGCCATCTG +
Preference number: 3 (lower is better)
Translates to: DDMANLMYQMRA*KAKALSVWSHL
Trigger: CAGATGGCTCCAGACTGACAGGGCCTTTGCTTTCCAAGCCCTCATCTGGTACATTAGGTTTGCCATGTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
3UTR CCA 72 bp TTGATGGCTGTGGTTCCTCTAAGCATGTCTGAGCCATaGGTGACAATAGTGGAACCTGGGGATCATCACCCT +
Preference number: 3 (lower is better)
Translates to: LMAVVPLSMSEP*VTIVEPGDHHP
Trigger: AGGGTGATGATCCCCAGGTTCCACTATTGTCACCCATGGCTCAGACATGCTTAGAGGAACCACAGCCATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp CAGCTTATTGATCACTGTTCCATTGGTGCTGGTGTCTTCCAGTGTCACCTCACCCCAGAGACCAGTTTATaGCTGGGGAAAGAGAGGTCA +
Preference number: 3 (lower is better)
Translates to: QLIDHCSIGAGVFQCHLTPETSL*LGKERS
Trigger: TGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGG...GGTGAGGTGACACTGGAAGACACCAGCACCAATGGAACAGTGATCAATAAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp ACCTGGGGATCATCACCCTGCCCTGGACCTGAGCAATCTTTGGTCACATGGAACACAACTTGCAGCTTATaGATCACTGTTCCATTGGTG +
Preference number: 3 (lower is better)
Translates to: TWGSSPCPGPEQSLVTWNTTCSL*ITVPLV
Trigger: CACCAATGGAACAGTGATCAATAAGCTGCAAGTTGT...GTTCCATGTGACCAAAGATTGCTCAGGTCCAGGGCAGGGTGATGATCCCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp GGATGTCCGATTCATAATTGTTATTGTTCAGCACTCCATCCAAGCACTTGTCCCAATCCGGGGCTGCTGTaGGCAAGCTGGCAGATGTTG +
Preference number: 3 (lower is better)
Translates to: GCPIHNCYCSALHPSTCPNPGLL*ASWQML
Trigger: CAACATCTGCCAGCTTGCCAACAGCAGCCCCGGATT...GGGACAAGTGCTTGGATGGAGTGCTGAACAATAACAATTATGAATCGGACATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
3UTR TCA 72 bp GCAAACTCACACAATCGTGCAGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCTCCATCTTGTCTGGCT +
Preference number: 3 (lower is better)
Translates to: ANSHNRAEGPGR*YRLVSPPSCLA
Trigger: AGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR GCA 72 bp GTCTCCTCTCAGTTGGGTACCCACTTTAGGTCCCTATaGTTCATCCCTGTCTACCCCTTTAGCCTTTATCCT +
Preference number: 3 (lower is better)
Translates to: VSSQLGTHFRSL*FIPVYPFSLYP
Trigger: AGGATAAAGGCTAAAGGGGTAGACAGGGATGAAGCATAGGGACCTAAAGTGGGTACCCAACTGAGAGGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200038.2
3UTR-3UTR CAA 90 bp GACAGCATAAATACACCTCGCTGCAGAGCCAGGAGACTCTCTGTCAACACACTTCCTCCTGACTTTGGGTaGCAGCATATCTTGAGTGAT +
Preference number: 3 (lower is better)
Translates to: DSINTPRCRARRLSVNTLPPDFG*QHILSD
Trigger: ATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGG...AAGTGTGTTGACAGAGAGTCTCCTGGCTCTGCAGCGAGGTGTATTTATGCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR TCA 72 bp TCTCCTCCATCTTGTCTGGCTTCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTTGGGCATTTCCACGCT +
Preference number: 3 (lower is better)
Translates to: SPPSCLASQRHL*HLHLRFGHFHA
Trigger: AGCGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 72 bp GTTTGGGCATTTCCACGCTGGCCTGAAACTAATAACTaGAGGTTCGTGTCAAGTTCCCCATCTCCTTTCATC +
Preference number: 3 (lower is better)
Translates to: VWAFPRWPETNN*RFVSSSPSPFI
Trigger: GATGAAAGGAGATGGGGAACTTGACACGAACCTCCAGTTATTAGTTTCAGGCCAGCGTGGAAATGCCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 72 bp TGGATAAGGTATGCTTCCACTAGGTTGTTCAGGATGTaGTTTTTGCAAATCCGCTCCACTGGACATCGGCAG +
Preference number: 3 (lower is better)
Translates to: WIRYASTRLFRM*FLQIRSTGHRQ
Trigger: CTGCCGATGTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAACAACCTAGTGGAAGCATACCTTATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp CTTCACTGCGACTTTTATCTCACACAATCGTGCAGAAGGTCCTGGCAGATGATACCAGAGACCAGTTTATaGCTGGGGAAAGAGAGGTCA +
Preference number: 3 (lower is better)
Translates to: LHCDFYLTQSCRRSWQMIPETSL*LGKERS
Trigger: TGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGG...TATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGATAAAAGTCGCAGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp ATGTGGTTTTTGCAAATCCGCTCCACTGGACATCGGCAGGTAGGGCACAGAGATACAACTTGCAGCTTATaGATCACTGTTCCATTGGTG +
Preference number: 3 (lower is better)
Translates to: MWFLQIRSTGHRQVGHRDTTCSL*ITVPLV
Trigger: CACCAATGGAACAGTGATCAATAAGCTGCAAGTTGT...ATCTCTGTGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGCAAAAACCACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCTGCTTCTTAACAACTaGCAGCTTATTGATCACTGT +
Preference number: 3 (lower is better)
Translates to: TKVQTCTVTASAHRRESGLLLNN*QLIDHC
Trigger: ACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCAG...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp AGGCTGGAAGCAGCAGGTGCATATGGCATGGCTTCCTTGAAGAGGGCACATGTACTGCTTCTTAACAACTaGCAGCTTATTGATCACTGT +
Preference number: 3 (lower is better)
Translates to: RLEAAGAYGMASLKRAHVLLLNN*QLIDHC
Trigger: ACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCAG...TACATGTGCCCTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp GATGCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTGCCCTGCAGAGGTGGACCTGAGCAATCTTaGGTCACATGGAACATATTT +
Preference number: 3 (lower is better)
Translates to: DACVPRSRARRMLLPCRGGPEQS*VTWNIF
Trigger: AAATATGTTCCATGTGACCAAAGATTGCTCAGGTCC...ACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp TCGACATCAGACAGCTCTAGCAGGTCCTCTGAACTCCCCTCTTCATCAGAGAAAGGATGCTTCTTTGTCTaGGAAAACTGGAGAAAGGCT +
Preference number: 3 (lower is better)
Translates to: STSDSSSRSSELPSSSEKGCFFV*ENWRKA
Trigger: AGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCC...TTTCTCTGATGAAGAGGGGAGTTCAGAGGACCTGCTAGAGCTGTCTGATGTCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATACTTTTGGGGAGATGCTaGTGTTCCCAGGTCCAGAGC +
Preference number: 3 (lower is better)
Translates to: NASDTADNFSYELPILTILLGRC*CSQVQS
Trigger: GCTCTGGACCTGGGAACACAAGCATCTCCCCAAAAG...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp AGCAAAGAAAAGGATGCTTCTTTGTCTTGGAAAACTGGAGAAAGGCTAGAGAGTCTTTTGGGGAGATGCTaGTGTTCCCAGGTCCAGAGC +
Preference number: 3 (lower is better)
Translates to: SKEKDASLSWKTGERLESLLGRC*CSQVQS
Trigger: GCTCTGGACCTGGGAACACAAGCATCTCCCCAAAAG...ACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 72 bp TTTATCTCACACAATCGTGCAGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCTCCATCTTGTCTGGCT +
Preference number: 3 (lower is better)
Translates to: FISHNRAEGPGR*YRLVSPPSCLA
Trigger: AGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR GCA 72 bp AAGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTaGACTGTCACTGCCTCAGCACACAGGAGGGAGAGC +
Preference number: 3 (lower is better)
Translates to: KVQGRKDTKVQT*TVTASAHRRES
Trigger: GCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
3UTR CCA 72 bp GACTCTCTGTCAACACACTTTTCCATGTCAGACCCCTaGTTGCCAGGTAATTCTTCAGGATGTCCGATTCAT +
Preference number: 3 (lower is better)
Translates to: DSLSTHFSMSDP*LPGNSSGCPIH
Trigger: ATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp TCGACATCAGACAGCTCTAGCAGGTCCTCTGAACTCCCCTCTTCATCAGAGAAACTGCTTCTTAACAACTaGCAGCTTATTGATCACTGT +
Preference number: 3 (lower is better)
Translates to: STSDSSSRSSELPSSSEKLLLNN*QLIDHC
Trigger: ACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCAG...TTTCTCTGATGAAGAGGGGAGTTCAGAGGACCTGCTAGAGCTGTCTGATGTCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCGCTAGAAGAATGCTTTaGCCCTGCAGAGGTCAGCTC +
Preference number: 3 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPARRML*PCRGQL
Trigger: GAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGC...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR TCA 72 bp ATTCAGGACACTGTCTGCAGACAATGTATGGCTGACTaGTATCTGAGGATTCACTGTCGACATCAGACAGCT +
Preference number: 3 (lower is better)
Translates to: IQDTVCRQCMAD*YLRIHCRHQTA
Trigger: AGCTGTCTGATGTCGACAGTGAATCCTCAGATATCAGTCAGCCATACATTGTCTGCAGACAGTGTCCTGAAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 72 bp CATCTTCTTCACTGCGACTTTTATCTCACACAATCGTaGAGAAGGTCCTGGCAGATGATACAGGTTAGTGTC +
Preference number: 3 (lower is better)
Translates to: HLLHCDFYLTQS*RRSWQMIQVSV
Trigger: GACACTAACCTGTATCATCTGCCAGGACCTTCTGCACGATTGTGTGAGATAAAAGTCGCAGTGAAGAAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR CCA 72 bp TTGACATCTTCACTTGAGGTTTGGGCATTTCCACGCTaGCCTGAAACTAATAACTGGAGGTTCGTGTCAAGT +
Preference number: 3 (lower is better)
Translates to: LTSSLEVWAFPR*PETNNWRFVSS
Trigger: ACTTGACACGAACCTCCAGTTATTAGTTTCAGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 72 bp TGTGTTCTGGCTCATTCTTCCTGTACACCAAATAGATaGTATCCCCGCTCTGTAAAGGGTAAGTCTGCTTCT +
Preference number: 3 (lower is better)
Translates to: CVLAHSSCTPNR*YPRSVKGKSAS
Trigger: AGAAGCAGACTTACCCTTTACAGAGCGGGGATATCATCTATTTGGTGTACAGGAAGAATGAGCCAGAACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 72 bp CTCTGTCAACACACTTTTCCATGTCAGACCCCTGGTTaGCAGGTAATTCTTCAGGATGTCCGATTCATAATT +
Preference number: 3 (lower is better)
Translates to: LCQHTFPCQTPG*QVILQDVRFII
Trigger: AATTATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp TGTCAGACCCCTGGTTGCCAGGTAATTCTTCAGGATGTCCGATTCATAATTGTTGGGTTGCAGCATATCTaGAGTGATTTTATTCCTTGC +
Preference number: 3 (lower is better)
Translates to: CQTPGCQVILQDVRFIIVGLQHI*SDFIPC
Trigger: GCAAGGAATAAAATCACTCAAGATATGCTGCAACCC...AACAATTATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR-3UTR CAA 90 bp GGATGTCCGATTCATAATTGTTATTGTTCAGCACTCCATCCAAGCACTTGTCCCGGGTTGCAGCATATCTaGAGTGATTTTATTCCTTGC +
Preference number: 3 (lower is better)
Translates to: GCPIHNCYCSALHPSTCPGLQHI*SDFIPC
Trigger: GCAAGGAATAAAATCACTCAAGATATGCTGCAACCC...GGGACAAGTGCTTGGATGGAGTGCTGAACAATAACAATTATGAATCGGACATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 72 bp TATTCCTTGCATCCATACTTCTCACATCTTCTTCACTaGGACTTTTATCTCACACAATCGTGCAGAAGGTCC +
Preference number: 3 (lower is better)
Translates to: YSLHPYFSHLLH*DFYLTQSCRRS
Trigger: GGACCTTCTGCACGATTGTGTGAGATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR CCA 72 bp CAGCAAAGAAAAGGATGCTTCTTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTCGCCATTTGCAACAAG +
Preference number: 3 (lower is better)
Translates to: QQRKGCFFVLEN*RKAREFAICNK
Trigger: CTTGTTGCAAATGGCGAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp TGCTTCTTAACAACTTGCAGCTTATTGATCACTGTTCCATTGGTGCTGGTGTCTACAACTTGCAGCTTATaGATCACTGTTCCATTGGTG +
Preference number: 3 (lower is better)
Translates to: CFLTTCSLLITVPLVLVSTTCSL*ITVPLV
Trigger: CACCAATGGAACAGTGATCAATAAGCTGCAAGTTGT...AGACACCAGCACCAATGGAACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp TGCTTCTTAACAACTTGCAGCTTATTGATCACTGTTCCATTGGTGCTGGTGTCTCTGCTTCTTAACAACTaGCAGCTTATTGATCACTGT +
Preference number: 3 (lower is better)
Translates to: CFLTTCSLLITVPLVLVSLLLNN*QLIDHC
Trigger: ACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCAG...AGACACCAGCACCAATGGAACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp CTTGCATCCATACTTCTCACATCTTCTTCACTGCGACTTTTATCTCACACAATCGGACCTGAGCAATCTTaGGTCACATGGAACATATTT +
Preference number: 3 (lower is better)
Translates to: LASILLTSSSLRLLSHTIGPEQS*VTWNIF
Trigger: AAATATGTTCCATGTGACCAAAGATTGCTCAGGTCC...GATTGTGTGAGATAAAAGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199672.5
3UTR-3UTR CAA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTTCACAGAGGCATCTTaGACATCTTCACTTGAGGTT +
Preference number: 3 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPFTEAS*TSSLEV
Trigger: AACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAA...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
3UTR GCA 72 bp TATTGGCTTCAAGGGAGTCTTGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGAGGTATGCCACATTGT +
Preference number: 3 (lower is better)
Translates to: YWLQGSLELSSV*HLKIHRGMPHC
Trigger: ACAATGTGGCATACCTCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTCAAGACTCCCTTGAAGCCAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR GCA 72 bp TTTGGGTTGCAGCATATCTTGAGTGATTTTATTCCTTaGATCCATACTTCTCACATCTTCTTCACTGCGACT +
Preference number: 3 (lower is better)
Translates to: FGLQHILSDFIP*IHTSHIFFTAT
Trigger: AGTCGCAGTGAAGAAGATGTGAGAAGTATGGATGCAAGGAATAAAATCACTCAAGATATGCTGCAACCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CCA 72 bp TTACTTTCCAGCAAAGAAAAGGATGCTTCTTTGTCTTaGAAAACTGGAGAAAGGCTAGAGAGTTCGCCATTT +
Preference number: 3 (lower is better)
Translates to: LLSSKEKDASLS*KTGERLESSPF
Trigger: AAATGGCGAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTGGAAAGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR TCA 72 bp ATTTACAGATCTATTTCACAAAGTTGTACTGAGAACTaGCTGATATCCATCATCAAGCATCCAGAAGAGCAA +
Preference number: 3 (lower is better)
Translates to: IYRSISQSCTEN*LISIIKHPEEQ
Trigger: TTGCTCTTCTGGATGCTTGATGATGGATATCAGTCAGTTCTCAGTACAACTTTGTGAAATAGATCTGTAAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200038.2
CDS-3UTR GCA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACCTCCCCCAGGGTTCCTaGGGCGGCGGCGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHLPQGS*GGGGCS
Trigger: AGAGCAGCCGCCGCCGCCGCAGGAACCCTGGGGGAG...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199557.5
CDS-3UTR GCA 90 bp AGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAGCAGCCAGTCCTCGTaGAGCCCCAGTACAGGTGGC +
Preference number: 4 (lower is better)
Translates to: RDWRAKGSASPGSRTWTLSSQSS*SPSTGG
Trigger: GCCACCTGTACTGGGGCTGCACGAGGACTGGCTGCT...GAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACTTGTCCCCCAGGTTaGGCTCACAGAATGGGGCCA +
Preference number: 4 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWTCPPG*AHRMGP
Trigger: TGGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGT...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCACTCCCCCAGGGTTCCTaGGGCGGCGGCGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: HLEFQQGVALRDWRAKGSLPQGS*GGGGCS
Trigger: AGAGCAGCCGCCGCCGCCGCAGGAACCCTGGGGGAG...TGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
CDS-3UTR TCA 90 bp AGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCACTTGTCCCCCAGGTTaGGCTCACAGAATGGGGCCA +
Preference number: 4 (lower is better)
Translates to: RDWRAKGSASPGSRTWTLTCPPG*AHRMGP
Trigger: TGGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGT...GAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GATGCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTTGCCCTGCAGAGGTCTCCCCCAGGGTTCCTaGGGCGGCGGCGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: DACVPRSRARRMLLPCRGLPQGS*GGGGCS
Trigger: AGAGCAGCCGCCGCCGCCGCAGGAACCCTGGGGGAG...ACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR GCA 90 bp GGAGGTCTGATGTCGATGTTGATGGCTGTGGTTCCTCTAAGCATGTCTGAGCCACTCCCCCAGGGTTCCTaGGGCGGCGGCGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: GGLMSMLMAVVPLSMSEPLPQGS*GGGGCS
Trigger: AGAGCAGCCGCCGCCGCCGCAGGAACCCTGGGGGAG...TGGCTCAGACATGCTTAGAGGAACCACAGCCATCAACATCGACATCAGACCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR GCA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGAGCAGCCAGTCCTCGTaGAGCCCCAGTACAGGTGGC +
Preference number: 4 (lower is better)
Translates to: VQTCTVTASAHRRESGPVSSQSS*SPSTGG
Trigger: GCCACCTGTACTGGGGCTGCACGAGGACTGGCTGCT...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGAGCAGCAGGTGCATATaGCATGGCTTCCTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWSSRCI*HGFLEE
Trigger: CTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCT...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGTCACTGTTCCATTGGTaGTGGTGTCTTCCAGTGTCA +
Preference number: 4 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWSLFHW*WCLPVS
Trigger: TGACACTGGAAGACACCAGCACCAATGGAACAGTGA...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATCGGTCAGGCATAGGCTaGAAGCAGCAGGTGCATATG +
Preference number: 4 (lower is better)
Translates to: GQEASQVTGARGVCVTDDRSGIG*KQQVHM
Trigger: CATATGCACCTGCTGCTTCCAGCCTATGCCTGACCG...ATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGACTTGTCCCCCAGGTTaGGCTCACAGAATGGGGCCA +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWTCPPG*AHRMGP
Trigger: TGGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGT...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GATCACTGTTCCATTGGTGCTGGTGTCTTCCAGTGTCACCTCACCAGATATTTCCTCCCCCAGGGTTCCTaGGGCGGCGGCGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: DHCSIGAGVFQCHLTRYFLPQGS*GGGGCS
Trigger: AGAGCAGCCGCCGCCGCCGCAGGAACCCTGGGGGAG...GAAATATCTGGTGAGGTGACACTGGAAGACACCAGCACCAATGGAACAGTGATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR GCA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGAGTGTGCATACAAGGCTaGAAACTCACACAATCGTGC +
Preference number: 4 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGVCIQG*KLTQSC
Trigger: GCACGATTGTGTGAGTTTGCAGCCTTGTATGCACAC...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGGAGCCTTCACCTGAGTaGGACAGTTACGGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWEPSPE*DSYGPS
Trigger: ACTGGGGCCGTAACTGTCGCACTCAGGTGAAGGCTC...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGGCAAATCCGCTCCACTaGACATCGGCAGGTAGGGCA +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWANPLH*TSAGRA
Trigger: TGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGC...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCGGGCTGTTGGCAAGCTaGCAGATGTTGAAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFGLLAS*QMLKVP
Trigger: AGGCACCTTCAACATCTGCCAGCTTGCCAACAGCCC...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014812.13
CDS-3UTR CCA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCGGTCAGGCATAGGCTaGAAGCAGCAGGTGCATATG +
Preference number: 4 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFRSGIG*KQQVHM
Trigger: CATATGCACCTGCTGCTTCCAGCCTATGCCTGACCG...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGATCCATGTCAGACCCCTaGTTGCCAGGTAATTCTTCA +
Preference number: 4 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGSMSDP*LPGNSS
Trigger: TGAAGAATTACCTGGCAACCAGGGGTCTGACATGGA...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACGACTTTTATCTGGGTaGTGGATAAGGTATGCTTCC +
Preference number: 4 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGRLLSG*WIRYAS
Trigger: GGAAGCATACCTTATCCAGCACCCAGATAAAAGTCG...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGAGCTCACAGATGTGATTaGATTTCATTGCATGGTGAG +
Preference number: 4 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGAHRCD*ISLHGE
Trigger: CTCACCATGCAATGAAATTCAATCACATCTGTGAGC...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGGTTTGCTCACAGATGTaGTTGAATTTCATTGCATGG +
Preference number: 4 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWVCSQM*LNFIAW
Trigger: CCATGCAATGAAATTCAATCACATCTGTGAGCAAAC...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACCCAGAGCTAGAAGAATaGTTTTGCCCTGCAGAGGTC +
Preference number: 4 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHPELEE*FCPAEV
Trigger: GACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGG...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGCTGGAAGCAGCAGGTaGATATGGCATGGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: VQTCTVTASAHRRESGPVAGSSR*IWHGFL
Trigger: AAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGC...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTAGGTGGCAGAAGGGCTaGAGGCACACCGCACACTGC +
Preference number: 4 (lower is better)
Translates to: CTPGGCKRMLPFLPENASRWQKG*RHTAHC
Trigger: GCAGTGTGCGGTGTGCCTGCAGCCCTTCTGCCACCT...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGAGTGATTGAATTTCATTaGATGGTGAGCCTTCACCTG +
Preference number: 4 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGVIEFH*MVSLHL
Trigger: CAGGTGAAGGCTCACCATGCAATGAAATTCAATCAC...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCCTTTTATCTGGGTGCTaGATAAGGTATGCTTCCACT +
Preference number: 4 (lower is better)
Translates to: RDWRAKGSASPGSRTWTLLLSGC*IRYAST
Trigger: AGTGGAAGCATACCTTATCCAGCACCCAGATAAAAG...GAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGCGGTCAGGCATAGGCTaGAAGCAGCAGGTGCATATG +
Preference number: 4 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGRSGIG*KQQVHM
Trigger: CATATGCACCTGCTGCTTCCAGCCTATGCCTGACCG...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp AGGCTGGAAGCAGCAGGTGCATATGGCATGGCTTCCTaGAAGAGGGCACATGTAATCCGGGGCTGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: RLEAAGAYGMAS*KRAHVIRGCCW
Trigger: CCAACAGCAGCCCCGGATTACATGTGCCCTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198066.5
CDS-3UTR GCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGTTGCAACAAGTGAACTaGGTCCTTTTGGGGAGATGC +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTLQQVN*VLLGRC
Trigger: GCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAA...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCTCAGGATGTGGTTTTTaGAAATCCGCTCCACTGGAC +
Preference number: 4 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFSGCGF*KSAPLD
Trigger: GTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGA...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCAGGTGGCAGAAGGGCTaGAGGCACACCGCACACTGC +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPRWQKG*RHTAHC
Trigger: GCAGTGTGCGGTGTGCCTGCAGCCCTTCTGCCACCT...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTAGGTGGCAGAAGGGCTaGAGGCACACCGCACACTGC +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRRWQKG*RHTAHC
Trigger: GCAGTGTGCGGTGTGCCTGCAGCCCTTCTGCCACCT...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACTGTCAGACCCCTGGTTaGCAGGTAATTCTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHCQTPG*QVILQD
Trigger: ATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACA...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCAGACCAGTTTATTGCTaGGGAAAGAGAGGTCACAGC +
Preference number: 4 (lower is better)
Translates to: EFQQGVALRDWRAKGSASRPVYC*GKRGHS
Trigger: GCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCT...GCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCATTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSFVLEN*RKAREF
Trigger: GAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAA...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCTCCATCTTGTCTaGCTTCACAGAGGCATCTTT +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTLLHLV*LHRGIF
Trigger: AAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAG...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTGCAAATCCGCTCCACTaGACATCGGCAGGTAGGGCA +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGANPLH*TSAGRA
Trigger: TGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGC...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGGCAAATCCGCTCCACTaGACATCGGCAGGTAGGGCA +
Preference number: 4 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEANPLH*TSAGRA
Trigger: TGCCCTACCTGCCGATGTCCAGTGGAGCGGATTTGC...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGAGCAGCAGGTGCATATaGCATGGCTTCCTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWSSRCI*HGFLEE
Trigger: CTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCT...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp AGGCTGGAAGCAGCAGGTGCATATGGCATGGCTTCCTaGAAGAGGGCACATGTAATCCGGGGCTGTTGGCAA +
Preference number: 4 (lower is better)
Translates to: RLEAAGAYGMAS*KRAHVIRGCWQ
Trigger: TTGCCAACAGCCCCGGATTACATGTGCCCTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR TCA 90 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCAGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: HLEFQQGVALRDWRAKGSEGPGR*YRLVSP
Trigger: AGGAGACACTAACCTGTATCATCTGCCAGGACCTTC...TGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR TCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGEGPGR*YRLVSP
Trigger: AGGAGACACTAACCTGTATCATCTGCCAGGACCTTC...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: KVQTCTVTASAHRRESGPRMLLP*RGQLWL
Trigger: GAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCT...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGTTGCAACAAGTGAACTaGGTCCTTTTGGGGAGATGC +
Preference number: 4 (lower is better)
Translates to: VQTCTVTASAHRRESGPVLQQVN*VLLGRC
Trigger: GCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAA...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGAGACCAGTTTATTGCTaGGGAAAGAGAGGTCACAGC +
Preference number: 4 (lower is better)
Translates to: VQTCTVTASAHRRESGPVRPVYC*GKRGHS
Trigger: GCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCT...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGTGCCACATTGTGTTCTaGCTCATTCTTCCTGTACAC +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTCHIVF*LILPVH
Trigger: GTGTACAGGAAGAATGAGCCAGAACACAATGTGGCA...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGTCTTCACTTGAGGTTTaGGCATTTCCACGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGSSLEV*AFPRWP
Trigger: AGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGA...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGAGACTATCCTATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCAGCCCCAGTACAGGTaGCAGAAGGGCTGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: RRLSYVPLEAVNVCFLSFQPQYR*QKGCRH
Trigger: GTGCCTGCAGCCCTTCTGCCACCTGTACTGGGGCTG...GAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATAGGATAGTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp GCTTGTGTTCCCAGGTCCAGAGCTAGAAGAATGCTTTaGCCCTGCAGAGGTCAGCTCTGGCTCCGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: ACVPRSRARRML*PCRGQLWLRRR
Trigger: TCTTCTACGGAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGGACCTGGGAACACAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR TCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGTCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTSQRHL*HLHLRF
Trigger: AAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGA...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGGCCTCAAACTCACACAATCGTaGAGAAGGTCCTGGCAGATG +
Preference number: 4 (lower is better)
Translates to: QSTDPLTPTRRLVWPGGLKLTQS*RRSWQM
Trigger: CATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTT...GAGGCCTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGGTGTGCATACAAGGCTaGAAACTCACACAATCGTGC +
Preference number: 4 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGVCIQG*KLTQSC
Trigger: GCACGATTGTGTGAGTTTGCAGCCTTGTATGCACAC...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGTCACATCTTCTTCACTaGGACTTTTATCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTSHLLH*DFYLGA
Trigger: AGCACCCAGATAAAAGTCGCAGTGAAGAAGATGTGA...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAGTGATTTTATTCCTTaGATCCATACTTCTCACATC +
Preference number: 4 (lower is better)
Translates to: RDWRAKGSASPGSRTWTLSDFIP*IHTSHI
Trigger: GATGTGAGAAGTATGGATGCAAGGAATAAAATCACT...GAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTGCTGGAAGCAGCAGGTaGATATGGCATGGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGAGSSR*IWHGFL
Trigger: AAGGAAGCCATGCCATATGCACCTGCTGCTTCCAGC...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCATGTCAGACCCCTGGTTaGCAGGTAATTCTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: HLEFQQGVALRDWRAKGSCQTPG*QVILQD
Trigger: ATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACA...TGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTGAGCCTTCACCTGAGTaGGACAGTTACGGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMREPSPE*DSYGPS
Trigger: ACTGGGGCCGTAACTGTCGCACTCAGGTGAAGGCTC...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACGTGATTGAATTTCATTaGATGGTGAGCCTTCACCTG +
Preference number: 4 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHVIEFH*MVSLHL
Trigger: CAGGTGAAGGCTCACCATGCAATGAAATTCAATCAC...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTA +
Preference number: 4 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHTVSLQ*SPETSL
Trigger: TAAACTGGTCTCTGGAGATCACTGTAAACTTACAGT...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGGCAGCATATCTTGAGTaGTTTTATTCCTTGCATCCA +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTAAYLE*FYSLHP
Trigger: TGGATGCAAGGAATAAAATCACTCAAGATATGCTGC...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGTCACATCTTCTTCACTaGGACTTTTATCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWSHLLH*DFYLGA
Trigger: AGCACCCAGATAAAAGTCGCAGTGAAGAAGATGTGA...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGAGTCCTTTTGGGGAGATaGTTGTGTTCCCAGGTCCAA +
Preference number: 4 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGVLLGR*LCSQVQ
Trigger: TTGGACCTGGGAACACAAGCATCTCCCCAAAAGGAC...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGAGCATGTCTGAGCCATaGGTGACAATAGTGGAACCT +
Preference number: 4 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQSMSEP*VTIVEP
Trigger: AGGTTCCACTATTGTCACCCATGGCTCAGACATGCT...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCTTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFFVLEN*RKAREF
Trigger: GAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAA...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGCTCCTCCATCTTGTCTaGCTTCACAGAGGCATCTTT +
Preference number: 4 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQLLHLV*LHRGIF
Trigger: AAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAG...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp AAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGGCTGTCTCACTCTCTGGGACTaGGCAAGGAAGAGACTGCAC +
Preference number: 4 (lower is better)
Translates to: KRLCLSRQETILCTPGGCLTLWD*ARKRLH
Trigger: GTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAG...ACAGCCTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTCACTCTCTGGGACTaGGCAAGGAAGAGACTGCAC +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRLTLWD*ARKRLH
Trigger: GTGCAGTCTCTTCCTTGCCCAGTCCCAGAGAGTGAG...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTA +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWTVSLQ*SPETSL
Trigger: TAAACTGGTCTCTGGAGATCACTGTAAACTTACAGT...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCATTTGACATCTTCACTTaGGGTTTGGGCATTTCCACG +
Preference number: 4 (lower is better)
Translates to: KVQTCTVTASAHRRESGPFDIFT*GLGIST
Trigger: CGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAA...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGCAGCATATCTTGAGTaGTTTTATTCCTTGCATCCA +
Preference number: 4 (lower is better)
Translates to: VQTCTVTASAHRRESGPVAAYLE*FYSLHP
Trigger: TGGATGCAAGGAATAAAATCACTCAAGATATGCTGC...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTTCACTGTTCCATTGGTaGTGGTGTCTTCCAGTGTCA +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGSLFHW*WCLPVS
Trigger: TGACACTGGAAGACACCAGCACCAATGGAACAGTGA...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TGGTGTGGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 4 (lower is better)
Translates to: WCGQEASQVTGARGVCVTCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...AGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCCACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGA +
Preference number: 4 (lower is better)
Translates to: GQEASQVTGARGVCVTDDELSSV*HLKIHR
Trigger: TCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTC...ATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCAGCAAAGAAAAGGATaGTTCTTTGTCTTGGAAAAC +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTQQRKG*FFVLEN
Trigger: GTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTG...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGAGTGTGCATACAAGGCTaGAAACTCACACAATCGTGC +
Preference number: 4 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGVCIQG*KLTQSC
Trigger: GCACGATTGTGTGAGTTTGCAGCCTTGTATGCACAC...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGCGACTTTTATCTGGGTaGTGGATAAGGTATGCTTCC +
Preference number: 4 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQRLLSG*WIRYAS
Trigger: GGAAGCATACCTTATCCAGCACCCAGATAAAAGTCG...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCAGTGATTGAATTTCATTaGATGGTGAGCCTTCACCTG +
Preference number: 4 (lower is better)
Translates to: HLEFQQGVALRDWRAKGSVIEFH*MVSLHL
Trigger: CAGGTGAAGGCTCACCATGCAATGAAATTCAATCAC...TGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTAGCATGTCTGAGCCATaGGTGACAATAGTGGAACCT +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGSMSEP*VTIVEP
Trigger: AGGTTCCACTATTGTCACCCATGGCTCAGACATGCT...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGTTTGTCTTGGAAAACTaGAGAAAGGCTAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWFVLEN*RKAREF
Trigger: GAACTCTCTAGCCTTTCTCCAGTTTTCCAAGACAAA...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCACTTTTATCTGGGTGCTaGATAAGGTATGCTTCCACT +
Preference number: 4 (lower is better)
Translates to: HLEFQQGVALRDWRAKGSLLSGC*IRYAST
Trigger: AGTGGAAGCATACCTTATCCAGCACCCAGATAAAAG...TGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGTCCATGTCAGACCCCTaGTTGCCAGGTAATTCTTCA +
Preference number: 4 (lower is better)
Translates to: ELSLLILLHRLEGWCGQESMSDP*LPGNSS
Trigger: TGAAGAATTACCTGGCAACCAGGGGTCTGACATGGA...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGGATGTTACAGTCACTaGCAACTCAGAAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: KVQTCTVTASAHRRESGPGCYSH*QLRSRN
Trigger: ATTCCTGCTTCTGAGTTGCCAGTGACTGTAACATCC...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp AGGTATGCTTCCACTAGGTTGTTCAGGATGTGGTTTTaGCAAATCCGCTCCACTGGACATCGGCAGGTAGGG +
Preference number: 4 (lower is better)
Translates to: RYASTRLFRMWF*QIRSTGHRQVG
Trigger: CCCTACCTGCCGATGTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAACAACCTAGTGGAAGCATACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
CDS-3UTR TCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGTTTGACATCTTCACTTaGGGTTTGGGCATTTCCACG +
Preference number: 4 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEFDIFT*GLGIST
Trigger: CGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAA...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCATCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: KVQTCTVTASAHRRESGPSQRHL*HLHLRF
Trigger: AAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGA...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 4 (lower is better)
Translates to: EFQQGVALRDWRAKGSASCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...GCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGA +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTELSSV*HLKIHR
Trigger: TCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTC...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGAGTGATTTTATTCCTTaGATCCATACTTCTCACATC +
Preference number: 4 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTSDFIP*IHTSHI
Trigger: GATGTGAGAAGTATGGATGCAAGGAATAAAATCACT...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGATTCAGGACACTGTCTaGAGACAATGTATGGCTGAC +
Preference number: 4 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEIQDTV*RQCMAD
Trigger: GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAAT...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCAGCAGCCAGTCCTCGTaGAGCCCCAGTACAGGTGGC +
Preference number: 4 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPSSQSS*SPSTGG
Trigger: GCCACCTGTACTGGGGCTGCACGAGGACTGGCTGCT...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACGAGCCTTCACCTGAGTaGGACAGTTACGGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHEPSPE*DSYGPS
Trigger: ACTGGGGCCGTAACTGTCGCACTCAGGTGAAGGCTC...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp CATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGGACTGGAGGGCTAAGGGCTCAGATGCTTCTTTGTCTTaGAAAACTGGAGAAAGGCTA +
Preference number: 4 (lower is better)
Translates to: HLEFQQGVALRDWRAKGSDASLS*KTGERL
Trigger: TAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATC...TGAGCCCTTAGCCCTCCAGTCCCTGAGAGCAACTCCCTGCTGAAACTCCAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTCTCCTCCATCTTGTCTaGCTTCACAGAGGCATCTTT +
Preference number: 4 (lower is better)
Translates to: CTPGGCKRMLPFLPENASLLHLV*LHRGIF
Trigger: AAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAG...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAGCCCCAGTACAGGTaGCAGAAGGGCTGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: DTADNFSYELPILTIVKVQPQYR*QKGCRH
Trigger: GTGCCTGCAGCCCTTCTGCCACCTGTACTGGGGCTG...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp GTCTCCTCCATCTTGTCTGGCTTCACAGAGGCATCTTaGACATCTTCACTTGAGGTTTGGGCATTTCCACGC +
Preference number: 4 (lower is better)
Translates to: VSSILSGFTEAS*TSSLEVWAFPR
Trigger: GCGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR TCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTTGGCTGACTGATATCTaGGGATTCACTGTCGACATC +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRWLTDI*GFTVDI
Trigger: GATGTCGACAGTGAATCCTCAGATATCAGTCAGCCA...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCTGGCTGACTGATATCTaGGGATTCACTGTCGACATC +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPWLTDI*GFTVDI
Trigger: GATGTCGACAGTGAATCCTCAGATATCAGTCAGCCA...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTGCTCACAGATGTGATTaGATTTCATTGCATGGTGAG +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGAHRCD*ISLHGE
Trigger: CTCACCATGCAATGAAATTCAATCACATCTGTGAGC...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGAATGCTTTTGCCCTaGAGAGGTCAGCTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRRMLLP*RGQLWL
Trigger: GAGCCAGAGCTGACCTCTGCAGGGCAAAAGCATTCT...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp AAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGGCTGTCTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: KRLCLSRQETILCTPGGCLEECF*PAEVSS
Trigger: AGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAG...ACAGCCTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp AGGAGACTATCCTATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCCAGAGCTAGAAGAATaGTTTTGCCCTGCAGAGGTC +
Preference number: 4 (lower is better)
Translates to: RRLSYVPLEAVNVCFLSFPELEE*FCPAEV
Trigger: GACCTCTGCAGGGCAAAAGCATTCTTCTAGCTCTGG...GAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATAGGATAGTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTTCAGGATGTGGTTTTTaGAAATCCGCTCCACTGGAC +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRSGCGF*KSAPLD
Trigger: GTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGA...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGGCTGTTGTCAGACCCCTGGTTaGCAGGTAATTCTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: KRLCLSRQETILCTPGGCCQTPG*QVILQD
Trigger: ATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACA...ACAGCCTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCAGACCAGTTTATTGCTaGGGAAAGAGAGGTCACAGC +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPRPVYC*GKRGHS
Trigger: GCTGTGACCTCTCTTTCCCCAGCAATAAACTGGTCT...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGACATATTTTCCTTATTaGCTTCAAGGGAGTCTTGAG +
Preference number: 4 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGTYFPY*LQGSLE
Trigger: CTCAAGACTCCCTTGAAGCCAATAAGGAAAATATGT...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR TCA 90 bp GACAATAGTGGAACCTGGGGATCATCACCCTGCCCTGGACCTGAGCAATCTTTGACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTA +
Preference number: 4 (lower is better)
Translates to: DNSGTWGSSPCPGPEQSLTVSLQ*SPETSL
Trigger: TAAACTGGTCTCTGGAGATCACTGTAAACTTACAGT...CAAAGATTGCTCAGGTCCAGGGCAGGGTGATGATCCCCAGGTTCCACTATTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199283.2
CDS-3UTR TCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCCAACTTGCAGCTTATTaGTCACTGTTCCATTGGTGC +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPQLAAY*SLFHWC
Trigger: GCACCAATGGAACAGTGATCAATAAGCTGCAAGTTG...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTTCACAGAGGCATCTTTaGCATCTTCACTTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: CTPGGCKRMLPFLPENASSQRHL*HLHLRF
Trigger: AAACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGA...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGAGCAGCATATCTTGAGTaGTTTTATTCCTTGCATCCA +
Preference number: 4 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGAAYLE*FYSLHP
Trigger: TGGATGCAAGGAATAAAATCACTCAAGATATGCTGC...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTGTTTGCTCACAGATGTaGTTGAATTTCATTGCATGG +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGVCSQM*LNFIAW
Trigger: CCATGCAATGAAATTCAATCACATCTGTGAGCAAAC...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGGCTGTATTCAGGACACTGTCTaGAGACAATGTATGGCTGAC +
Preference number: 4 (lower is better)
Translates to: KRLCLSRQETILCTPGGCIQDTV*RQCMAD
Trigger: GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAAT...ACAGCCTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTTGCCACATTGTGTTCTaGCTCATTCTTCCTGTACAC +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRCHIVF*LILPVH
Trigger: GTGTACAGGAAGAATGAGCCAGAACACAATGTGGCA...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGGACCTGAGCAATCTTTaGTCACATGGAACATATTTT +
Preference number: 4 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQDLSNL*SHGTYF
Trigger: AAAATATGTTCCATGTGACCAAAGATTGCTCAGGTC...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGGATGCTTCTTTGTCTTaGAAAACTGGAGAAAGGCTA +
Preference number: 4 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEDASLS*KTGERL
Trigger: TAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATC...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGTCTTCACTTGAGGTTTaGGCATTTCCACGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRSSLEV*AFPRWP
Trigger: AGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGA...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGCAGAGAAAGACCTCCTaGCTTTGGGTTGCAGCATAT +
Preference number: 4 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRQRKTS*LWVAAY
Trigger: ATATGCTGCAACCCAAAGTCAGGAGGTCTTTCTCTG...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCGCTCACAGATGTGATTaGATTTCATTGCATGGTGAG +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPAHRCD*ISLHGE
Trigger: CTCACCATGCAATGAAATTCAATCACATCTGTGAGC...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAAACTCACACAATCGTaGAGAAGGTCCTGGCAGATG +
Preference number: 4 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRKLTQS*RRSWQM
Trigger: CATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTT...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAAGTGATTTTATTCCTTaGATCCATACTTCTCACATC +
Preference number: 4 (lower is better)
Translates to: KVQTCTVTASAHRRESGPSDFIP*IHTSHI
Trigger: GATGTGAGAAGTATGGATGCAAGGAATAAAATCACT...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTACATATTTTCCTTATTaGCTTCAAGGGAGTCTTGAG +
Preference number: 4 (lower is better)
Translates to: TKVQTCTVTASAHRRESGTYFPY*LQGSLE
Trigger: CTCAAGACTCCCTTGAAGCCAATAAGGAAAATATGT...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGGACCTGAGCAATCTTTaGTCACATGGAACATATTTT +
Preference number: 4 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEDLSNL*SHGTYF
Trigger: AAAATATGTTCCATGTGACCAAAGATTGCTCAGGTC...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTTTTATCTGGGTGCTaGATAAGGTATGCTTCCACT +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRLLSGC*IRYAST
Trigger: AGTGGAAGCATACCTTATCCAGCACCCAGATAAAAG...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp TGGGGATCATCACCCTGCCCTGGACCTGAGCAATCTTaGGTCACATGGAACATATTTTCCTTATTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: WGSSPCPGPEQS*VTWNIFSLLAS
Trigger: TGAAGCCAATAAGGAAAATATGTTCCATGTGACCAAAGATTGCTCAGGTCCAGGGCAGGGTGATGATCCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000198066.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
3UTR CAA 72 bp TCCTGGCAGATGATACAGGTTAGTGTCTCCTCCATCTaGTCTGGCTTCACAGAGGCATCTTTGACATCTTCA +
Preference number: 4 (lower is better)
Translates to: SWQMIQVSVSSI*SGFTEASLTSS
Trigger: TGAAGATGTCAAAGATGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACTAACCTGTATCATCTGCCAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
ENSMUST00000199672.5
CDS-3UTR TCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCACTGTAAGTTTACAGTaGTCTCCAGAGACCAGTTTA +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPTVSLQ*SPETSL
Trigger: TAAACTGGTCTCTGGAGATCACTGTAAACTTACAGT...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTGGTTGCAGCATATCTTaGGTGATTTTATTCCTTGCA +
Preference number: 4 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRGCSIS*VILFLA
Trigger: TGCAAGGAATAAAATCACTCAAGATATGCTGCAACC...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCCTTTTGGGGAGATaGTTGTGTTCCCAGGTCCAG +
Preference number: 4 (lower is better)
Translates to: NASDTADNFSYELPILTIVLLGR*LCSQVQ
Trigger: CTGGACCTGGGAACACAAGCATCTCCCCAAAAGGAC...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCGTCCTTTTGGGGAGATaGTTGTGTTCCCAGGTCCAG +
Preference number: 4 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPVLLGR*LCSQVQ
Trigger: CTGGACCTGGGAACACAAGCATCTCCCCAAAAGGAC...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAAACTCACACAATCGTaGAGAAGGTCCTGGCAGATG +
Preference number: 4 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHKLTQS*RRSWQM
Trigger: CATCTGCCAGGACCTTCTGCACGATTGTGTGAGTTT...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp TTATCTGGGTGCTGGATAAGGTATGCTTCCACTAGGTaGTTCAGGATGTGGTTTTTGCAAATCCGCTCCACT +
Preference number: 4 (lower is better)
Translates to: LSGCWIRYASTR*FRMWFLQIRST
Trigger: AGTGGAGCGGATTTGCAAAAACCACATCCTGAACAACCTAGTGGAAGCATACCTTATCCAGCACCCAGATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
CDS-3UTR TCA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCGAAGGTCCTGGCAGATaGTACAGGTTAGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPEGPGR*YRLVSP
Trigger: AGGAGACACTAACCTGTATCATCTGCCAGGACCTTC...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGTGGCTGACTGATATCTaGGGATTCACTGTCGACATC +
Preference number: 4 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQWLTDI*GFTVDI
Trigger: GATGTCGACAGTGAATCCTCAGATATCAGTCAGCCA...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGTCACTGTTCCATTGGTaGTGGTGTCTTCCAGTGTCA +
Preference number: 4 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQSLFHW*WCLPVS
Trigger: TGACACTGGAAGACACCAGCACCAATGGAACAGTGA...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AGGAGACTATCCTATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCGATGCTTCTTTGTCTTaGAAAACTGGAGAAAGGCTA +
Preference number: 4 (lower is better)
Translates to: RRLSYVPLEAVNVCFLSFDASLS*KTGERL
Trigger: TAGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATC...GAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATAGGATAGTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTTCTTCACTTGAGGTTTaGGCATTTCCACGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: ADNFSYELPILTIVKVQGSSLEV*AFPRWP
Trigger: AGGCCAGCGTGGAAATGCCCAAACCTCAAGTGAAGA...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTAGCAGCAGGTGCATATaGCATGGCTTCCTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: ADNFSYELPILTIVKVQGSSRCI*HGFLEE
Trigger: CTCTTCAAGGAAGCCATGCCATATGCACCTGCTGCT...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACGGATGTTACAGTCACTaGCAACTCAGAAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHGCYSH*QLRSRN
Trigger: ATTCCTGCTTCTGAGTTGCCAGTGACTGTAACATCC...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
3UTR CAA 72 bp TCTCTGTCAACACACTTTTCCATGTCAGACCCCTGGTaGCCAGGTAATTCTTCAGGATGTCCGATTCATAAT +
Preference number: 4 (lower is better)
Translates to: SLSTHFSMSDPW*PGNSSGCPIHN
Trigger: ATTATGAATCGGACATCCTGAAGAATTACCTGGCAACCAGGGGTCTGACATGGAAAAGTGTGTTGACAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199557.5
CDS-3UTR TCA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTCAGAGAAAGACCTCCTaGCTTTGGGTTGCAGCATAT +
Preference number: 4 (lower is better)
Translates to: ADNFSYELPILTIVKVQGQRKTS*LWVAAY
Trigger: ATATGCTGCAACCCAAAGTCAGGAGGTCTTTCTCTG...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCTGCTTCTTAACAACTTaGAGCTTATTGATCACTGTT +
Preference number: 4 (lower is better)
Translates to: FLPENASDTADNFSYELPCFLTT*SLLITV
Trigger: AACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCA...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACTAGAAGAATGCTTTTaGCCTGCAGAGGTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: DTADNFSYELPILTIVKVLEECF*PAEVSS
Trigger: AGAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAG...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR GCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTATTGCAACAAGTGAACTaGGTCCTTTTGGGGAGATGC +
Preference number: 4 (lower is better)
Translates to: DTADNFSYELPILTIVKVLQQVN*VLLGRC
Trigger: GCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAA...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTATCAGGATGTGGTTTTTaGAAATCCGCTCCACTGGAC +
Preference number: 4 (lower is better)
Translates to: DTADNFSYELPILTIVKVSGCGF*KSAPLD
Trigger: GTCCAGTGGAGCGGATTTGCAAAAACCACATCCTGA...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATATCCATGTCAGACCCCTaGTTGCCAGGTAATTCTTCA +
Preference number: 4 (lower is better)
Translates to: NASDTADNFSYELPILTISMSDP*LPGNSS
Trigger: TGAAGAATTACCTGGCAACCAGGGGTCTGACATGGA...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTTTGACATCTTCACTTaGGGTTTGGGCATTTCCACG +
Preference number: 4 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPFDIFT*GLGIST
Trigger: CGTGGAAATGCCCAAACCTCAAGTGAAGATGTCAAA...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATACGACTTTTATCTGGGTaGTGGATAAGGTATGCTTCC +
Preference number: 4 (lower is better)
Translates to: NASDTADNFSYELPILTIRLLSG*WIRYAS
Trigger: GGAAGCATACCTTATCCAGCACCCAGATAAAAGTCG...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGTCACATCTTCTTCACTaGGACTTTTATCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQSHLLH*DFYLGA
Trigger: AGCACCCAGATAAAAGTCGCAGTGAAGAAGATGTGA...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAATTCAGGACACTGTCTaGAGACAATGTATGGCTGAC +
Preference number: 4 (lower is better)
Translates to: NASDTADNFSYELPILTIIQDTV*RQCMAD
Trigger: GTCAGCCATACATTGTCTGCAGACAGTGTCCTGAAT...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGGATGTTACAGTCACTaGCAACTCAGAAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: NASDTADNFSYELPILTIGCYSH*QLRSRN
Trigger: ATTCCTGCTTCTGAGTTGCCAGTGACTGTAACATCC...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTAGGTTGCAGCATATCTTaGGTGATTTTATTCCTTGCA +
Preference number: 4 (lower is better)
Translates to: DTADNFSYELPILTIVKVGCSIS*VILFLA
Trigger: TGCAAGGAATAAAATCACTCAAGATATGCTGCAACC...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR TCA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTGGTTGCAGCATATCTTaGGTGATTTTATTCCTTGCA +
Preference number: 4 (lower is better)
Translates to: ADNFSYELPILTIVKVQGGCSIS*VILFLA
Trigger: TGCAAGGAATAAAATCACTCAAGATATGCTGCAACC...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATACAGCAAAGAAAAGGATaGTTCTTTGTCTTGGAAAAC +
Preference number: 4 (lower is better)
Translates to: NASDTADNFSYELPILTIQQRKG*FFVLEN
Trigger: GTTTTCCAAGACAAAGAAGCATCCTTTTCTTTGCTG...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR GCA 90 bp GACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTAGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGA +
Preference number: 4 (lower is better)
Translates to: DTADNFSYELPILTIVKVELSSV*HLKIHR
Trigger: TCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTC...TACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGGCAAGCTGGCAGATGTaGAAGGTGCCTCCCCACCAA +
Preference number: 5 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWASWQM*KVPPHQ
Trigger: TTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGC...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAATCCGGGGCTGCTGTaGGCAAGCTGGCAGATGTTG +
Preference number: 5 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSNPGLL*ASWQML
Trigger: CAACATCTGCCAGCTTGCCAACAGCAGCCCCGGATT...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCCTTTTGGGGAGATGCTaGTGTTCCCAGGTCCAAGGG +
Preference number: 5 (lower is better)
Translates to: RDWRAKGSASPGSRTWTLLLGRC*CSQVQG
Trigger: CCCTTGGACCTGGGAACACAAGCATCTCCCCAAAAG...GAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAGCTAGAAGAATGCTTTaGCCCTGCAGAGGTCAGCTC +
Preference number: 5 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSARRML*PCRGQL
Trigger: GAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGC...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGAAGTGTCTCCTCCATCTaGTCTGGCTTCACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGSVSSI*SGFTEA
Trigger: TGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACT...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS CCA 90 bp CCTCTCCTCCTTCCGATGGTCCACTCGCGTTTCCAAAGAAGGATCTaGGGTTCGTCCTCCTCTGCGCCTAGACGAAGAAGCCTCCCCCAG +
Preference number: 5 (lower is better)
Translates to: PLLLPMVHSRFQRRI*GSSSSAPRRRSLPQ
Trigger: CTGGGGGAGGCTTCTTCGTCTAGGCGCAGAGGAGGACGAACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
ENSMUST00000199811.3
ENSMUST00000200038.2
CDS CCA 90 bp GCTCTCCTCCTTCCGATGGTCCACTCGCGTTTCCAAAGAAGGATCTaGGGTTCGTCCTCCTCTGCGCCTAGACGAAGAAGCCTCCCCCAG +
Preference number: 5 (lower is better)
Translates to: ALLLPMVHSRFQRRI*GSSSSAPRRRSLPQ
Trigger: CTGGGGGAGGCTTCTTCGTCTAGGCGCAGAGGAGGACGAACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199283.2
CDS CCA 90 bp TCTCTCCTCCTTCCGATGGTCCACTCGCGTTTCCAAAGAAGGATCTaGGGTTCGTCCTCCTCTGCGCCTAGACGAAGAAGCCTCCCCCAG +
Preference number: 5 (lower is better)
Translates to: SLLLPMVHSRFQRRI*GSSSSAPRRRSLPQ
Trigger: CTGGGGGAGGCTTCTTCGTCTAGGCGCAGAGGAGGACGAACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198066.5
ENSMUST00000199672.5
CDS CCA 90 bp ACTCTCCTCCTTCCGATGGTCCACTCGCGTTTCCAAAGAAGGATCTaGGGTTCGTCCTCCTCTGCGCCTAGACGAAGAAGCCTCCCCCAG +
Preference number: 5 (lower is better)
Translates to: TLLLPMVHSRFQRRI*GSSSSAPRRRSLPQ
Trigger: CTGGGGGAGGCTTCTTCGTCTAGGCGCAGAGGAGGACGAACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199557.5
CDS-3UTR CAA 90 bp GGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCATTGATCACTGTTCCATaGGTGCTGGTGTCTTCCAGT +
Preference number: 5 (lower is better)
Translates to: GTGGLRAQPALGRGPGHSLITVP*VLVSSS
Trigger: ACTGGAAGACACCAGCACCAATGGAACAGTGATCAA...TGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATCCAGAGACCAGTTTATaGCTGGGGAAAGAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: GQEASQVTGARGVCVTDDPETSL*LGKERS
Trigger: TGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGG...ATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGTATGCTTCCACTAGGTaGTTCAGGATGTGGTTTTTG +
Preference number: 5 (lower is better)
Translates to: ALRDWRAKGSASPGSRTWYASTR*FRMWFL
Trigger: CAAAAACCACATCCTGAACAACCTAGTGGAAGCATA...CCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGACTCCATCCAAGCACTaGTCCCCCAGGTTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: VQTCTVTASAHRRESGPVTPSKH*SPRLSS
Trigger: TGAGCTCAACCTGGGGGACAAGTGCTTGGATGGAGT...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCGGTCTGATGTCGATGTaGATGGCTGTGGTTCCTCTA +
Preference number: 5 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFGLMSM*MAVVPL
Trigger: TAGAGGAACCACAGCCATCAACATCGACATCAGACC...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp CTCTCAGGGACTGGAGGGCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGATTCACAGAGGCATCTTaGACATCTTCACTTGAGGTT +
Preference number: 5 (lower is better)
Translates to: LSGTGGLRAQPALGRGPGFTEAS*TSSLEV
Trigger: AACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAA...TCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGCCCTCCAGTCCCTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGGCTAGAAGAATGCTTTaGCCCTGCAGAGGTCAGCTC +
Preference number: 5 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGARRML*PCRGQL
Trigger: GAGCTGACCTCTGCAGGGCAAAAGCATTCTTCTAGC...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGCTTTTGGGGAGATGCTaGTGTTCCCAGGTCCAGAGC +
Preference number: 5 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQLLGRC*CSQVQS
Trigger: GCTCTGGACCTGGGAACACAAGCATCTCCCCAAAAG...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGAGTGTCTCCTCCATCTaGTCTGGCTTCACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGSVSSI*SGFTEA
Trigger: TGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACT...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp CAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGGCCTCAGTGTCTCCTCCATCTaGTCTGGCTTCACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: QSTDPLTPTRRLVWPGGLSVSSI*SGFTEA
Trigger: TGCCTCTGTGAAGCCAGACAAGATGGAGGAGACACT...GAGGCCTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCTCCTGACTTTGGGTaGCAGCATATCTTGAGTGAT +
Preference number: 5 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFPPDFG*QHILSD
Trigger: ATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGG...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTGCAAGCTGGCAGATGTaGAAGGTGCCTCCCCACCAA +
Preference number: 5 (lower is better)
Translates to: TKVQTCTVTASAHRRESGASWQM*KVPPHQ
Trigger: TTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGC...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGAAATCCGGGGCTGCTGTaGGCAAGCTGGCAGATGTTG +
Preference number: 5 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGNPGLL*ASWQML
Trigger: CAACATCTGCCAGCTTGCCAACAGCAGCCCCGGATT...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCTTTTGGGGAGATGCTaGTGTTCCCAGGTCCAGAGC +
Preference number: 5 (lower is better)
Translates to: TKVQTCTVTASAHRRESGLLGRC*CSQVQS
Trigger: GCTCTGGACCTGGGAACACAAGCATCTCCCCAAAAG...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp CCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACGGATGCTTCTTTGTCTaGGAAAACTGGAGAAAGGCT +
Preference number: 5 (lower is better)
Translates to: PPRLLGHVVCVSLTMTLHGCFFV*ENWRKA
Trigger: AGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCC...GTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TGGTGTGGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGGGTTGCAGCATATCTaGAGTGATTTTATTCCTTGC +
Preference number: 5 (lower is better)
Translates to: WCGQEASQVTGARGVCVTGLQHI*SDFIPC
Trigger: GCAAGGAATAAAATCACTCAAGATATGCTGCAACCC...AGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCCACACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTGGAGGCTGTCACTTGTCCCCCAGGTaGAGCTCACAGAATGGGGCC +
Preference number: 5 (lower is better)
Translates to: KRLCLSRQETILCTPGGCHLSPR*SSQNGA
Trigger: GGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGTG...ACAGCCTCCAGGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGATGTCAGACCCCTGGTaGCCAGGTAATTCTTCAGGA +
Preference number: 5 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGMSDPW*PGNSSG
Trigger: TCCTGAAGAATTACCTGGCAACCAGGGGTCTGACAT...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGACAACTTGCAGCTTATaGATCACTGTTCCATTGGTG +
Preference number: 5 (lower is better)
Translates to: RRPPRLLGHVVCVSLTMTTTCSL*ITVPLV
Trigger: CACCAATGGAACAGTGATCAATAAGCTGCAAGTTGT...CGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGGATGCTTCTTTGTCTaGGAAAACTGGAGAAAGGCT +
Preference number: 5 (lower is better)
Translates to: VQTCTVTASAHRRESGPVGCFFV*ENWRKA
Trigger: AGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCC...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTAAGGGCTCAGCCAGCCCTGGGTCGAGGACCTGGACACTCAAGACTTCCTTCGGGTTGCAGCATATCTaGAGTGATTTTATTCCTTGC +
Preference number: 5 (lower is better)
Translates to: AKGSASPGSRTWTLKTSFGLQHI*SDFIPC
Trigger: GCAAGGAATAAAATCACTCAAGATATGCTGCAACCC...GAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCAGGGCTGGCTGAGCCCTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGTATGGCATGGCTTCCTaGAAGAGGGCACATGTAATC +
Preference number: 5 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGYGMAS*KRAHVI
Trigger: GATTACATGTGCCCTCTTCAAGGAAGCCATGCCATA...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAATGTCAGACCCCTGGTaGCCAGGTAATTCTTCAGGA +
Preference number: 5 (lower is better)
Translates to: KVQTCTVTASAHRRESGPMSDPW*PGNSSG
Trigger: TCCTGAAGAATTACCTGGCAACCAGGGGTCTGACAT...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GGCCAGGAGGCCTCCCAGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGTTCTTGAACCTTGTTaGCTCACAGATGTGATTGAA +
Preference number: 5 (lower is better)
Translates to: GQEASQVTGARGVCVTDDVLEPC*LTDVIE
Trigger: TTCAATCACATCTGTGAGCAAACAAGGTTCAAGAAC...ATCGTCAGTGACACACACACCACGTGCCCCAGTAACCTGGGAGGCCTCCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGACCAGAGACCAGTTTATaGCTGGGGAAAGAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGPETSL*LGKERS
Trigger: TGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGG...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GAACTCAGTCTACTGATCCTCTTACACCGACTAGAAGGCTGGTGTGGCCAGGAGCCAGAGACCAGTTTATaGCTGGGGAAAGAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: ELSLLILLHRLEGWCGQEPETSL*LGKERS
Trigger: TGACCTCTCTTTCCCCAGCAATAAACTGGTCTCTGG...CTCCTGGCCACACCAGCCTTCTAGTCGGTGTAAGAGGATCAGTAGACTGAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGTTCACAGAGGCATCTTaGACATCTTCACTTGAGGTT +
Preference number: 5 (lower is better)
Translates to: VQTCTVTASAHRRESGPVFTEAS*TSSLEV
Trigger: AACCTCAAGTGAAGATGTCAAAGATGCCTCTGTGAA...CACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTAAGAGACTGCACCGCTaGCCTTCTGTATTCAGGACA +
Preference number: 5 (lower is better)
Translates to: TKVQTCTVTASAHRRESGKRLHR*PSVFRT
Trigger: TGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTT...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGAAAGAGACTGCACCGCTaGCCTTCTGTATTCAGGACA +
Preference number: 5 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGKRLHR*PSVFRT
Trigger: TGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTT...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AAAGGCCCTGTCAGTCTGGAGCCATCTGGAGTTTCAGCAGGGAGTTGCTCTCAGTATGGCATGGCTTCCTaGAAGAGGGCACATGTAATC +
Preference number: 5 (lower is better)
Translates to: KGPVSLEPSGVSAGSCSQYGMAS*KRAHVI
Trigger: GATTACATGTGCCCTCTTCAAGGAAGCCATGCCATA...CTGAGAGCAACTCCCTGCTGAAACTCCAGATGGCTCCAGACTGACAGGGCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTACTCCATCCAAGCACTaGTCCCCCAGGTTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRTPSKH*SPRLSS
Trigger: TGAGCTCAACCTGGGGGACAAGTGCTTGGATGGAGT...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGTGGCTGCTTCTTAACAACTaGCAGCTTATTGATCACTGT +
Preference number: 5 (lower is better)
Translates to: YKPALSLPQHTGGRAVQWLLLNN*QLIDHC
Trigger: ACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCAG...CCACTGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTTACTGGGGCACGTGGTGTGTGTGTCACTGACGATGACGCTCCACAAAGGGGGACCTGAGCAATCTTaGGTCACATGGAACATATTT +
Preference number: 5 (lower is better)
Translates to: RLLGHVVCVSLTMTLHKGGPEQS*VTWNIF
Trigger: AAATATGTTCCATGTGACCAAAGATTGCTCAGGTCC...CCCTTTGTGGAGCGTCATCGTCAGTGACACACACACCACGTGCCCCAGTAACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTAAGAGACTGCACCGCTaGCCTTCTGTATTCAGGACA +
Preference number: 5 (lower is better)
Translates to: CTPGGCKRMLPFLPENASKRLHR*PSVFRT
Trigger: TGTCCTGAATACAGAAGGCAAGCGGTGCAGTCTCTT...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACCACTTGTCCCCCAGGTaGAGCTCACAGAATGGGGCC +
Preference number: 5 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHHLSPR*SSQNGA
Trigger: GGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGTG...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTCCAGGACCTGAGCAATCTTaGGTCACATGGAACATATTT +
Preference number: 5 (lower is better)
Translates to: KVQTCTVTASAHRRESGPGPEQS*VTWNIF
Trigger: AAATATGTTCCATGTGACCAAAGATTGCTCAGGTCC...TGGACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp TTCCTTCCGGAGAATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCGGTCTGATGTCGATGTaGATGGCTGTGGTTCCTCTA +
Preference number: 5 (lower is better)
Translates to: FLPENASDTADNFSYELPGLMSM*MAVVPL
Trigger: TAGAGGAACCACAGCCATCAACATCGACATCAGACC...GGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATTCTCCGGAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
CDS-3UTR CAA 90 bp TGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTCTCCTCCTGACTTTGGGTaGCAGCATATCTTGAGTGAT +
Preference number: 5 (lower is better)
Translates to: CTPGGCKRMLPFLPENASPPDFG*QHILSD
Trigger: ATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGG...AGACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACTTGTCCCCCAGGTaGAGCTCACAGAATGGGGCC +
Preference number: 5 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQHLSPR*SSQNGA
Trigger: GGCCCCATTCTGTGAGCTCAACCTGGGGGACAAGTG...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TATGTACCCCTGGAGGCTGTAAACGTATGCTTCCTTTCCTTCCGGAGAATGCGTATGTCAGACCCCTGGTaGCCAGGTAATTCTTCAGGA +
Preference number: 5 (lower is better)
Translates to: YVPLEAVNVCFLSFRRMRMSDPW*PGNSSG
Trigger: TCCTGAAGAATTACCTGGCAACCAGGGGTCTGACAT...ACGCATTCTCCGGAAGGAAAGGAAGCATACGTTTACAGCCTCCAGGGGTACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TCGATGTTGATGGCTGTGGTTCCTCTAAGCATGTCTGAGCCATGGGTGACAATACCAGAGACCAGTTTATaGCTCTCCTCCTTCCGATGG +
Preference number: 5 (lower is better)
Translates to: SMLMAVVPLSMSEPWVTIPETSL*LSSFRW
Trigger: CCATCGGAAGGAGGAGAGCAATAAACTGGTCTCTGG...TATTGTCACCCATGGCTCAGACATGCTTAGAGGAACCACAGCCATCAACATCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199283.2
CDS-3UTR CAA 90 bp ACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGAGGGAGAGCGGTACAACTTGCAGCTTATaGATCACTGTTCCATTGGTG +
Preference number: 5 (lower is better)
Translates to: TKVQTCTVTASAHRRESGTTCSL*ITVPLV
Trigger: CACCAATGGAACAGTGATCAATAAGCTGCAAGTTGT...ACCGCTCTCCCTCCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp TGGGTCGAGGACCTGGACACTCAAGACTTCCTTCCCAGGATTAGCAGTTTCGGACTGCTTCTTAACAACTaGCAGCTTATTGATCACTGT +
Preference number: 5 (lower is better)
Translates to: WVEDLDTQDFLPRISSFGLLLNN*QLIDHC
Trigger: ACAGTGATCAATAAGCTGCAAGTTGTTAAGAAGCAG...TCCGAAACTGCTAATCCTGGGAAGGAAGTCTTGAGTGTCCAGGTCCTCGACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGCAAGCTGGCAGATGTaGAAGGTGCCTCCCCACCAA +
Preference number: 5 (lower is better)
Translates to: NASDTADNFSYELPILTIASWQM*KVPPHQ
Trigger: TTGGTGGGGAGGCACCTTCAACATCTGCCAGCTTGC...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTACTCCATCCAAGCACTaGTCCCCCAGGTTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: ADNFSYELPILTIVKVQGTPSKH*SPRLSS
Trigger: TGAGCTCAACCTGGGGGACAAGTGCTTGGATGGAGT...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp CAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACTTCAGGATGTGGTTTTaGCAAATCCGCTCCACTGGA +
Preference number: 5 (lower is better)
Translates to: QGRKDTKVQTCTVTASAHFRMWF*QIRSTG
Trigger: TCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAA...GTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGTTCAGGATGTGGTTTTaGCAAATCCGCTCCACTGGA +
Preference number: 5 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQFRMWF*QIRSTG
Trigger: TCCAGTGGAGCGGATTTGCAAAAACCACATCCTGAA...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AATGCGTCTGACACAGCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATATTGATCACTGTTCCATaGGTGCTGGTGTCTTCCAGT +
Preference number: 5 (lower is better)
Translates to: NASDTADNFSYELPILTILITVP*VLVSSS
Trigger: ACTGGAAGACACCAGCACCAATGGAACAGTGATCAA...TATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGCTGTGTCAGACGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGGGATGCTTCTTTGTCTaGGAAAACTGGAGAAAGGCT +
Preference number: 5 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQGCFFV*ENWRKA
Trigger: AGCCTTTCTCCAGTTTTCCAAGACAAAGAAGCATCC...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTCCTCCTGACTTTGGGTaGCAGCATATCTTGAGTGAT +
Preference number: 5 (lower is better)
Translates to: ADNFSYELPILTIVKVQGPPDFG*QHILSD
Trigger: ATCACTCAAGATATGCTGCAACCCAAAGTCAGGAGG...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GCTGACAACTTTTCCTATGAGCTTCCCATTTTAACCATAGTCAAGGTACAAGGTTATGGCATGGCTTCCTaGAAGAGGGCACATGTAATC +
Preference number: 5 (lower is better)
Translates to: ADNFSYELPILTIVKVQGYGMAS*KRAHVI
Trigger: GATTACATGTGCCCTCTTCAAGGAAGCCATGCCATA...ACCTTGTACCTTGACTATGGTTAAAATGGGAAGCTCATAGGAAAAGTTGTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp GGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGCACACAGGGTTCTTGAACCTTGTTaGCTCACAGATGTGATTGAA +
Preference number: 5 (lower is better)
Translates to: GRKDTKVQTCTVTASAHRVLEPC*LTDVIE
Trigger: TTCAATCACATCTGTGAGCAAACAAGGTTCAAGAAC...CCTGTGTGCTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGACAACTTGCAGCTTATaGATCACTGTTCCATTGGTG +
Preference number: 5 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQTTCSL*ITVPLV
Trigger: CACCAATGGAACAGTGATCAATAAGCTGCAAGTTGT...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AGGTACAAGGTAGAAAAGATACAAAAGTACAAACCTGCACTGTCACTGCCTCAGGGGTTGCAGCATATCTaGAGTGATTTTATTCCTTGC +
Preference number: 5 (lower is better)
Translates to: RYKVEKIQKYKPALSLPQGLQHI*SDFIPC
Trigger: GCAAGGAATAAAATCACTCAAGATATGCTGCAACCC...CTGAGGCAGTGACAGTGCAGGTTTGTACTTTTGTATCTTTTCTACCTTGTACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS-3UTR CAA 90 bp AAAAATATACAAAAGGCTGTGTCTTTCCAGACAGGAGACTATCCTATGTACCCCTATGCTTCCACTAGGTaGTTCAGGATGTGGTTTTTG +
Preference number: 5 (lower is better)
Translates to: KNIQKAVSFQTGDYPMYPYASTR*FRMWFL
Trigger: CAAAAACCACATCCTGAACAACCTAGTGGAAGCATA...GGGGTACATAGGATAGTCTCCTGTCTGGAAAGACACAGCCTTTTGTATATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
CDS GCA 72 bp TCTGCGCCTAGACGAAGAAGCCTCCCCCAGGGTTCCTaGGGCGGCGGCGGCTGCTCTTCCCCGTGTAGCTCC +
Preference number: 6 (lower is better)
Translates to: SAPRRRSLPQGS*GGGGCSSPCSS
Trigger: GGAGCTACACGGGGAAGAGCAGCCGCCGCCGCCGCAGGAACCCTGGGGGAGGCTTCTTCGTCTAGGCGCAGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198066.5
ENSMUST00000198633.5
ENSMUST00000199283.2
ENSMUST00000199557.5
ENSMUST00000199672.5
ENSMUST00000199811.3
ENSMUST00000200038.2
CDS CCA 72 bp ACTCCACTCTGGCCACCGCACCTCTCCTCCTTCCGATaGTCCACTCGCGTTTCCAAAGAAGGATCTGGGGTT +
Preference number: 6 (lower is better)
Translates to: TPLWPPHLSSFR*STRVSKEGSGV
Trigger: AACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGGTGCGGTGGCCAGAGTGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200038.2
CDS CCA 72 bp TGGGGAAAGAGAGGTCACAGCCTCTCCTCCTTCCGATaGTCCACTCGCGTTTCCAAAGAAGGATCTGGGGTT +
Preference number: 6 (lower is better)
Translates to: WGKRGHSLSSFR*STRVSKEGSGV
Trigger: AACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGGCTGTGACCTCTCTTTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000014812.13
ENSMUST00000112519.9
ENSMUST00000198633.5
ENSMUST00000199811.3
CDS CCA 72 bp TCTCCAGAGACCAGTTTATTGCTCTCCTCCTTCCGATaGTCCACTCGCGTTTCCAAAGAAGGATCTGGGGTT +
Preference number: 6 (lower is better)
Translates to: SPETSLLLSSFR*STRVSKEGSGV
Trigger: AACCCCAGATCCTTCTTTGGAAACGCGAGTGGACCATCGGAAGGAGGAGAGCAATAAACTGGTCTCTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199283.2
CDS CAA 72 bp AGAGTTCGCCATTTGCAACAAGTGAACTGCGTCCTTTaGGGGAGATGCTTGTGTTCCCAGGTCCAAGGGAGT +
Preference number: 6 (lower is better)
Translates to: RVRHLQQVNCVL*GRCLCSQVQGS
Trigger: ACTCCCTTGGACCTGGGAACACAAGCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAAATGGCGAACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198633.5
CDS CAA 72 bp TTGCAACAAGTGAACTGCGTCCTTTTGGGGAGATGCTaGTGTTCCCAGGTCCAAGGGAGTCTTGAGTTAAGC +
Preference number: 6 (lower is better)
Translates to: LQQVNCVLLGRC*CSQVQGSLELS
Trigger: GCTTAACTCAAGACTCCCTTGGACCTGGGAACACAAGCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198633.5
CDS GCA 72 bp CATTTGCAACAAGTGAACTGCGTCCTTTTGGGGAGATaGTTGTGTTCCCAGGTCCAAGGGAGTCTTGAGTTA +
Preference number: 6 (lower is better)
Translates to: HLQQVNCVLLGR*LCSQVQGSLEL
Trigger: TAACTCAAGACTCCCTTGGACCTGGGAACACAAGCATCTCCCCAAAAGGACGCAGTTCACTTGTTGCAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198633.5
CDS GCA 72 bp TCCCAGGTCCAAGGGAGTCTTGAGTTAAGCTCTGTTTaGCACTTAAAGATTCATAGAGGTATGCCACATTGT +
Preference number: 6 (lower is better)
Translates to: SQVQGSLELSSV*HLKIHRGMPHC
Trigger: ACAATGTGGCATACCTCTATGAATCTTTAAGTGGCAAACAGAGCTTAACTCAAGACTCCCTTGGACCTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198633.5