Pregenerated sensors for CHEK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029521Ensembl transcript IDs: ENSMUST00000066160.3, ENSMUST00000198373.2, ENSMUST00000199937.5, ENSMUST00000200172.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTACTGTACAGCTACAAGCATCTGGTAGAAGTAGAGCTTACAGGTaGCTTCTTTCAGGCGCTTGTTCCCCACCACCCGGTCAAATAGTT | + |
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Preference number: 1 (lower is better) Translates to: GTVQLQASGRSRAYR*LLSGACSPPPGQIV Trigger: AACTATTTGACCGGGTGGTGGGGAACAAGCGCCTGAAAGAAGCCACCTGTAAGCTCTACTTCTACCAGATGCTTGTAGCTGTACAGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR TCA 90 bp | TTCTATTTCAGTTTCCACACTGGGAGCTGTGTCGGCTTCTCTCGATaGGCCAAGAGCAAACCTCCGCTTGCTAATGATCTTTATGGCCAC | + |
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Preference number: 1 (lower is better) Translates to: FYFSFHTGSCVGFSR*AKSKPPLANDLYGH Trigger: GTGGCCATAAAGATCATTAGCAAGCGGAGGTTTGCTCTTGGCTCATCGAGAGAAGCCGACACAGCTCCCAGTGTGGAAACTGAAATAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR TCA 90 bp | TTAATGATTATGTGTTTCTGTGTACATGAACACATGTGTAGTAGGTaGCCAGAGAGGCCAGGTGAGGGCATCCGATCCAGAAATGTAGTT | + |
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Preference number: 1 (lower is better) Translates to: LMIMCFCVHEHMCSR*PERPGEGIRSRNVV Trigger: AACTACATTTCTGGATCGGATGCCCTCACCTGGCCTCTCTGGTCACCTACTACACATGTGTTCATGTACACAGAAACACATAATCATTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| 3UTR TCA 90 bp | CCTGAGATGATAAAAGAACATTCTCCGGCTTTAAGTCCCGATGTATaGTCCCATTTTCGTGAAGGTACTGTACAGCTACAAGCATCTGGT | + |
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Preference number: 1 (lower is better) Translates to: PEMIKEHSPALSPDV*SHFREGTVQLQASG Trigger: ACCAGATGCTTGTAGCTGTACAGTACCTTCACGAAAATGGGATCATACATCGGGACTTAAAGCCGGAGAATGTTCTTTTATCATCTCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR TCA 90 bp | CAGTTCCAGGGGCCGCTTTTGACTGGAAGTCTGGGCGGGAGCCACAGGGAGGGTTGCACCAGGAGATCCTaGAATTTCTTCTTCATGTAC | + |
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Preference number: 2 (lower is better) Translates to: QFQGPLLTGSLGGSHREGCTRRS*NFFFMY Trigger: GTACATGAAGAAGAAATTTCAGGATCTCCTGGTGCA...ACCCTCCCTGTGGCTCCCGCCCAGACTTCCAGTCAAAAGCGGCCCCTGGAACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR GCA 90 bp | AGCCACAGGGAGGGTCACCGAGTTCTTTTCCTGCACCAGGAGATCCTGAAATTTTGCTGGGAACTGAACTaGAGCCCTCAACAGGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: SHREGHRVLFLHQEILKFCWELN*SPQQEW Trigger: CCACTCCTGTTGAGGGCTGCAGTTCAGTTCCCAGCA...AAATTTCAGGATCTCCTGGTGCAGGAAAAGAACTCGGTGACCCTCCCTGTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR TCA 90 bp | TTGTGCTCGGCATACCCTCCACCTCCAGTTCCAGGGGCCGCTTTTGACTGGAAGTTTATGGCCACTTTCTaGCATGTCTTCCTCTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: LCSAYPPPPVPGAAFDWKFMATF*HVFLSK Trigger: TTTTGAGAGGAAGACATGTCAGAAAGTGGCCATAAA...CTTCCAGTCAAAAGCGGCCCCTGGAACTGGAGGTGGAGGGTATGCCGAGCACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CCA 90 bp | TCAGGCGCTTGTTCCCCACCACCCGGTCAAATAGTTCTCCTCCTTCCATCAGTTAAGACAATTGGAGCGTaGAAGGAAGCACATTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: SGACSPPPGQIVLLLPSVKTIGA*KEAHFF Trigger: AAAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTT...AACTGATGGAAGGAGGAGAACTATTTGACCGGGTGGTGGGGAACAAGCGCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCGATGGAGAAGACAATTaGAGCGTGGAAGGAAGCACA | + |
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Preference number: 2 (lower is better) Translates to: QPSTGVVLISQHHPLTFFDGEDN*SVEGST Trigger: TGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATC...GAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| 3UTR-3UTR CCA 90 bp | CCTGCACCAGGAGATCCTGAAATTTCTTCTTCATGTACTCATCCTGAAGCCACGGATGGAGAAGACAATTaGAGCGTGGAAGGAAGCACA | + |
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Preference number: 2 (lower is better) Translates to: PAPGDPEISSSCTHPEATDGEDN*SVEGST Trigger: TGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATC...CGTGGCTTCAGGATGAGTACATGAAGAAGAAATTTCAGGATCTCCTGGTGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CCA 90 bp | CCTGCACCAGGAGATCCTGAAATTTCTTCTTCATGTACTCATCCTGAAGCCACGAGTAGAGCTTACAGGTaGCTTCTTTCAGGCGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: PAPGDPEISSSCTHPEATSRAYR*LLSGAC Trigger: ACAAGCGCCTGAAAGAAGCCACCTGTAAGCTCTACT...CGTGGCTTCAGGATGAGTACATGAAGAAGAAATTTCAGGATCTCCTGGTGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCAAGACAATTGGAGCGTaGAAGGAAGCACATTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: QPSTGVVLISQHHPLTFFKTIGA*KEAHFF Trigger: AAAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTT...GAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| 3UTR-3UTR CCA 90 bp | ACTGCAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTAAAAAGATGTCAAGATaGAGAAGACAATTGGAGCGT | + |
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Preference number: 2 (lower is better) Translates to: TAALNRSGVNLSTPPPNIKKMSR*RRQLER Trigger: ACGCTCCAATTGTCTTCTCCATCTTGACATCTTTTT...AATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTGCAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| 3UTR-3UTR TCA 90 bp | ATCAAGGAGGTCTCCCCCAAGATCTTGGACTGCCCAAAGTCAGTGATCTTGATTAGACAATCCTCTTCCTaGGATGATAAAAGAACATTC | + |
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Preference number: 2 (lower is better) Translates to: IKEVSPKILDCPKSVILIRQSSS*DDKRTF Trigger: GAATGTTCTTTTATCATCTCAGGAAGAGGATTGTCT...AATCAAGATCACTGACTTTGGGCAGTCCAAGATCTTGGGGGAGACCTCCTTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR TCA 72 bp | GGCATACCCTCCACCTCCAGTTCCAGGGGCCGCTTTTaGCTGGAAGTCTGGGCGGGAGCCACAGGGAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: GIPSTSSSRGRF*LEVWAGATGRV Trigger: GACCCTCCCTGTGGCTCCCGCCCAGACTTCCAGTCAAAAGCGGCCCCTGGAACTGGAGGTGGAGGGTATGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR CCA 72 bp | CAGCTACAAGCATCTGGTAGAAGTAGAGCTTACAGGTaGCTTCTTTCAGGCGCTTGTTCCCCACCACCCGGT | + |
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Preference number: 3 (lower is better) Translates to: QLQASGRSRAYR*LLSGACSPPPG Trigger: ACCGGGTGGTGGGGAACAAGCGCCTGAAAGAAGCCACCTGTAAGCTCTACTTCTACCAGATGCTTGTAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CAA 90 bp | ATCAAGGAGGTCTCCCCCAAGATCTTGGACTGCCCAAAGTCAGTGATCTTGATTGTGATGGAAAAGCAATaGTTCCATCATATAGGCTAT | + |
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Preference number: 3 (lower is better) Translates to: IKEVSPKILDCPKSVILIVMEKQ*FHHIGY Trigger: ATAGCCTATATGATGGAACAATTGCTTTTCCATCAC...AATCAAGATCACTGACTTTGGGCAGTCCAAGATCTTGGGGGAGACCTCCTTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CAA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTAGAGCAAACCTCCGCTaGCTAATGATCTTTATGGCC | + |
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Preference number: 3 (lower is better) Translates to: RKKSKVQVIKQSAQISTFRANLR*LMIFMA Trigger: GGCCATAAAGATCATTAGCAAGCGGAGGTTTGCTCT...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR TCA 72 bp | ATAAAAGAACATTCTCCGGCTTTAAGTCCCGATGTATaGTCCCATTTTCGTGAAGGTACTGTACAGCTACAA | + |
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Preference number: 3 (lower is better) Translates to: IKEHSPALSPDV*SHFREGTVQLQ Trigger: TTGTAGCTGTACAGTACCTTCACGAAAATGGGATCATACATCGGGACTTAAAGCCGGAGAATGTTCTTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| 3UTR-3UTR CAA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTGTGATGGAAAAGCAATaGTTCCATCATATAGGCTAT | + |
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Preference number: 3 (lower is better) Translates to: RKKSKVQVIKQSAQISTFVMEKQ*FHHIGY Trigger: ATAGCCTATATGATGGAACAATTGCTTTTCCATCAC...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | TACAGGTGGCTTCTTTCAGGCGCTTGTTCCCCACCACCCGGTCAAATAGTTCTCGGAGTGCCTTGGGGCTaGCTGAAGCCACCCTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: YRWLLSGACSPPPGQIVLGVPWG*LKPPWD Trigger: GTCCCAGGGTGGCTTCAGCCAGCCCCAAGGCACTCC...GAGAACTATTTGACCGGGTGGTGGGGAACAAGCGCCTGAAAGAAGCCACCTGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | TTGTGCTCGGCATACCCTCCACCTCCAGTTCCAGGGGCCGCTTTTGACTGGAAGTCAGAGTCCCAGAACTaGAGTGCGAGGACTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LCSAYPPPPVPGAAFDWKSESQN*SARTGW Trigger: CCAGCCAGTCCTCGCACTCCAGTTCTGGGACTCTGA...CTTCCAGTCAAAAGCGGCCCCTGGAACTGGAGGTGGAGGGTATGCCGAGCACAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | TCTGTGTACATGAACACATGTGTAGTAGGTGACCAGAGAGGCCAGGTGAGGGCAGGAGTGCCTTGGGGCTaGCTGAAGCCACCCTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SVYMNTCVVGDQRGQVRAGVPWG*LKPPWD Trigger: GTCCCAGGGTGGCTTCAGCCAGCCCCAAGGCACTCC...TGCCCTCACCTGGCCTCTCTGGTCACCTACTACACATGTGTTCATGTACACAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR GCA 90 bp | GGCATCCGATCCAGAAATGTAGTTACATGGGTGCTGGGAACTGAACTGCAGCCCGTCCCAGAACTGGAGTaGGAGGACTGGCTGGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: GIRSRNVVTWVLGTELQPVPELE*EDWLED Trigger: GTCCTCCAGCCAGTCCTCGCACTCCAGTTCTGGGAC...GGGCTGCAGTTCAGTTCCCAGCACCCATGTAACTACATTTCTGGATCGGATGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | GGCATCCGATCCAGAAATGTAGTTACATGGGTGCTGGGAACTGAACTGCAGCCCGAGCTGGACGAACCCTaGTACTGTGAGAGCTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: GIRSRNVVTWVLGTELQPELDEP*YCESSC Trigger: GCACGAGCTCTCACAGTATCAGGGTTCGTCCAGCTC...GGGCTGCAGTTCAGTTCCCAGCACCCATGTAACTACATTTCTGGATCGGATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | TCTGTGTACATGAACACATGTGTAGTAGGTGACCAGAGAGGCCAGGTGAGGGCACAGGAAGCACTGTCATaGGCCTTCGAGGAGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SVYMNTCVVGDQRGQVRAQEALS*AFEEVL Trigger: CAGCACCTCCTCGAAGGCTCATGACAGTGCTTCCTG...TGCCCTCACCTGGCCTCTCTGGTCACCTACTACACATGTGTTCATGTACACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | AGCCACAGGGAGGGTCACCGAGTTCTTTTCCTGCACCAGGAGATCCTGAAATTTGCCACCCTGGGACTGTaGACAGGAAGCACTGTCATG | + |
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Preference number: 4 (lower is better) Translates to: SHREGHRVLFLHQEILKFATLGL*TGSTVM Trigger: CATGACAGTGCTTCCTGTTCACAGTCCCAGGGTGGC...AAATTTCAGGATCTCCTGGTGCAGGAAAAGAACTCGGTGACCCTCCCTGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | TACAGGTGGCTTCTTTCAGGCGCTTGTTCCCCACCACCCGGTCAAATAGTTCTCTTGGAGAATCCATCCTaGAGAGCCCATAGCCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: YRWLLSGACSPPPGQIVLLENPS*RAHSRA Trigger: GGCTCGGCTATGGGCTCTTCAGGATGGATTCTCCAA...GAGAACTATTTGACCGGGTGGTGGGGAACAAGCGCCTGAAAGAAGCCACCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR GCA 90 bp | GGCATCCGATCCAGAAATGTAGTTACATGGGTGCTGGGAACTGAACTGCAGCCCGAGCCTTCGAGGAGGTaGTGCTGTGGGACTGATGAT | + |
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Preference number: 4 (lower is better) Translates to: GIRSRNVVTWVLGTELQPEPSRR*CCGTDD Trigger: ATCATCAGTCCCACAGCAGCACCTCCTCGAAGGCTC...GGGCTGCAGTTCAGTTCCCAGCACCCATGTAACTACATTTCTGGATCGGATGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | TCTGTGTACATGAACACATGTGTAGTAGGTGACCAGAGAGGCCAGGTGAGGGCATTGGAGAATCCATCCTaGAGAGCCCATAGCCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SVYMNTCVVGDQRGQVRALENPS*RAHSRA Trigger: GGCTCGGCTATGGGCTCTTCAGGATGGATTCTCCAA...TGCCCTCACCTGGCCTCTCTGGTCACCTACTACACATGTGTTCATGTACACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR GCA 90 bp | AGCCACAGGGAGGGTCACCGAGTTCTTTTCCTGCACCAGGAGATCCTGAAATTTGAGCCTTCGAGGAGGTaGTGCTGTGGGACTGATGAT | + |
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Preference number: 4 (lower is better) Translates to: SHREGHRVLFLHQEILKFEPSRR*CCGTDD Trigger: ATCATCAGTCCCACAGCAGCACCTCCTCGAAGGCTC...AAATTTCAGGATCTCCTGGTGCAGGAAAAGAACTCGGTGACCCTCCCTGTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | ACTGCAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTCAGAGTCCCAGAACTaGAGTGCGAGGACTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TAALNRSGVNLSTPPPNISESQN*SARTGW Trigger: CCAGCCAGTCCTCGCACTCCAGTTCTGGGACTCTGA...AATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTGCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | TTGTGCTCGGCATACCCTCCACCTCCAGTTCCAGGGGCCGCTTTTGACTGGAAGCGTCCTTCTCAACAGTaGTCCATCGAAGCAATATTC | + |
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Preference number: 4 (lower is better) Translates to: LCSAYPPPPVPGAAFDWKRPSQQ*SIEAIF Trigger: GAATATTGCTTCGATGGACCACTGTTGAGAAGGACG...CTTCCAGTCAAAAGCGGCCCCTGGAACTGGAGGTGGAGGGTATGCCGAGCACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | AAAAAGATGTCAAGATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTGCCTTGGGGCTGGCTaGAGCCACCCTGGGACTGTG | + |
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Preference number: 4 (lower is better) Translates to: KKMSRWRRQLERGRKHISCLGAG*SHPGTV Trigger: CACAGTCCCAGGGTGGCTTCAGCCAGCCCCAAGGCA...AGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATCTTGACATCTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR GCA 90 bp | ACTGTACAGCTACAAGCATCTGGTAGAAGTAGAGCTTACAGGTGGCTTCTTTCAGTCCCAGAACTGGAGTaGGAGGACTGGCTGGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: TVQLQASGRSRAYRWLLSVPELE*EDWLED Trigger: GTCCTCCAGCCAGTCCTCGCACTCCAGTTCTGGGAC...TGAAAGAAGCCACCTGTAAGCTCTACTTCTACCAGATGCTTGTAGCTGTACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | GGCATCCGATCCAGAAATGTAGTTACATGGGTGCTGGGAACTGAACTGCAGCCCAGTAGAGCTTACAGGTaGCTTCTTTCAGGCGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: GIRSRNVVTWVLGTELQPSRAYR*LLSGAC Trigger: ACAAGCGCCTGAAAGAAGCCACCTGTAAGCTCTACT...GGGCTGCAGTTCAGTTCCCAGCACCCATGTAACTACATTTCTGGATCGGATGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR GCA 90 bp | TCTGTGTACATGAACACATGTGTAGTAGGTGACCAGAGAGGCCAGGTGAGGGCACCCAAGATCTTGGACTaGCCAAAGTCAGTGATCTTG | + |
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Preference number: 4 (lower is better) Translates to: SVYMNTCVVGDQRGQVRAPKILD*PKSVIL Trigger: CAAGATCACTGACTTTGGGCAGTCCAAGATCTTGGG...TGCCCTCACCTGGCCTCTCTGGTCACCTACTACACATGTGTTCATGTACACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR TCA 90 bp | GATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTTCACATTCAAAGCAGGAAGCACTGTCATaGGCCTTCGAGGAGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: DGEDNWSVEGSTFLSHSKQEALS*AFEEVL Trigger: CAGCACCTCCTCGAAGGCTCATGACAGTGCTTCCTG...CTTTGAATGTGAAAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | AAAAAGATGTCAAGATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTGAGAGCTCGTGCAACTaGGAAGGAGTGCCTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: KKMSRWRRQLERGRKHISESSCN*EGVPWG Trigger: GCCCCAAGGCACTCCTTCTCAGTTGCACGAGCTCTC...AGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATCTTGACATCTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | GAAATTTCTTCTTCATGTACTCATCCTGAAGCCACGGATGATTTAAGGCCTCCTGAGCTGGACGAACCCTaGTACTGTGAGAGCTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: EISSSCTHPEATDDLRPPELDEP*YCESSC Trigger: GCACGAGCTCTCACAGTATCAGGGTTCGTCCAGCTC...AGGAGGCCTTAAATCATCCGTGGCTTCAGGATGAGTACATGAAGAAGAAATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | CAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCCAGGAGCCAGATAAGTaGGCGTACCACATAAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: QPSTGVVLISQHHPLTFFQEPDK*AYHIRF Trigger: GAACCTTATGTGGTACGCCCACTTATCTGGCTCCTG...GAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR TCA 90 bp | AAAAGATGTCAAGATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTGCCACCCTGGGACTGTaGACAGGAAGCACTGTCATG | + |
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Preference number: 4 (lower is better) Translates to: KRCQDGEDNWSVEGSTFLATLGL*TGSTVM Trigger: CATGACAGTGCTTCCTGTTCACAGTCCCAGGGTGGC...AAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATCTTGACATCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTGAGAGCTCGTGCAACTaGGAAGGAGTGCCTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: RKKSKVQVIKQSAQISTFESSCN*EGVPWG Trigger: GCCCCAAGGCACTCCTTCTCAGTTGCACGAGCTCTC...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | AAAAGATGTCAAGATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTGTCCAGAGCCTCCTCTaGGACATCTGTCCAGACTTC | + |
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Preference number: 4 (lower is better) Translates to: KRCQDGEDNWSVEGSTFLVQSLL*DICPDF Trigger: GAAGTCTGGACAGATGTCTCAGAGGAGGCTCTGGAC...AAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATCTTGACATCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR TCA 90 bp | ACTGCAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTGCACCAGGAGATCCTaGAATTTCTTCTTCATGTAC | + |
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Preference number: 4 (lower is better) Translates to: TAALNRSGVNLSTPPPNICTRRS*NFFFMY Trigger: GTACATGAAGAAGAAATTTCAGGATCTCCTGGTGCA...AATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTGCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR CCA 90 bp | GCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCTTATAGAACAGAGTTCCTaGGTAGACACTGTCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ALNRSGVNLSTPPPNIFLIEQSS*VDTVSS Trigger: GCTGGAGACAGTGTCTACCCAGGAACTCTGTTCTAT...AAGAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | GCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCTTCGTCCTTCTCAACAGTaGTCCATCGAAGCAATATTC | + |
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Preference number: 4 (lower is better) Translates to: ALNRSGVNLSTPPPNIFLRPSQQ*SIEAIF Trigger: GAATATTGCTTCGATGGACCACTGTTGAGAAGGACG...AAGAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | GATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTTCACATTCAAAGGGTTCTTCAGGTTCTTaGTCCTCAGGAATAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: DGEDNWSVEGSTFLSHSKGSSGS*SSGIEQ Trigger: CTGTTCTATTCCTGAGGACCAAGAACCTGAAGAACC...CTTTGAATGTGAAAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CCA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTTTTCAGTTTCCACACTaGGAGCTGTGTCGGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RKKSKVQVIKQSAQISTFFQFPH*ELCRLL Trigger: GAGAAGCCGACACAGCTCCCAGTGTGGAAACTGAAA...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR CCA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTGGTTCTTCAGGTTCTTaGTCCTCAGGAATAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: RKKSKVQVIKQSAQISTFGSSGS*SSGIEQ Trigger: CTGTTCTATTCCTGAGGACCAAGAACCTGAAGAACC...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR TCA 90 bp | AAAAGATGTCAAGATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTTTTATGGCCACTTTCTaGCATGTCTTCCTCTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: KRCQDGEDNWSVEGSTFLFMATF*HVFLSK Trigger: TTTTGAGAGGAAGACATGTCAGAAAGTGGCCATAAA...AAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATCTTGACATCTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR TCA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTTTCCTTAGGATAAACTaGCTGATCATCTACAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: RKKSKVQVIKQSAQISTFFLRIN*LIIYSQ Trigger: CTGACTGTAGATGATCAGTCAGTTTATCCTAAGGAA...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR TCA 90 bp | AAAAGATGTCAAGATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTAGACAATCCTCTTCCTaGGATGATAAAAGAACATTC | + |
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Preference number: 4 (lower is better) Translates to: KRCQDGEDNWSVEGSTFLRQSSS*DDKRTF Trigger: GAATGTTCTTTTATCATCTCAGGAAGAGGATTGTCT...AAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATCTTGACATCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR TCA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTACTTCCAAGAGTTTTTaGCATGATGTATTCGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: RKKSKVQVIKQSAQISTFTSKSF*HDVFVS Trigger: AGAGACGAATACATCATGTCAAAAACTCTTGGAAGT...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS TCA 90 bp | GGACGGCACTGTGCCGGTAGAGGAGCTGGACGAACCCTGATACTGTaGGAGCTCGTGCAACTGAGAAGGAGTGCCTTGGGGCTGGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: GRHCAGRGAGRTLIL*ELVQLRRSALGLAE Trigger: TTCAGCCAGCCCCAAGGCACTCCTTCTCAGTTGCACGAGCTCTCACAGTATCAGGGTTCGTCCAGCTCCTCTACCGGCACAGTGCCGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS TCA 90 bp | ACTGTGAGAGCTCGTGCAACTGAGAAGGAGTGCCTTGGGGCTGGCTaGAGCCACCCTGGGACTGTGAACAGGAAGCACTGTCATGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: TVRARATEKECLGAG*SHPGTVNRKHCHEP Trigger: AGGCTCATGACAGTGCTTCCTGTTCACAGTCCCAGGGTGGCTTCAGCCAGCCCCAAGGCACTCCTTCTCAGTTGCACGAGCTCTCACAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS CCA 90 bp | GCCCATAGCCGAGCCCAAGGGGCAGGACCAGGTTCTTCAGGTTCTTaGTCCTCAGGAATAGAACAGAGTTCCTGGGTAGACACTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: AHSRAQGAGPGSSGS*SSGIEQSSWVDTVS Trigger: GGAGACAGTGTCTACCCAGGAACTCTGTTCTATTCCTGAGGACCAAGAACCTGAAGAACCTGGTCCTGCCCCTTGGGCTCGGCTATGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CAA 90 bp | CAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCCTGAGAAGGAGTGCCTaGGGGCTGGCTGAAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: QPSTGVVLISQHHPLTFFLRRSA*GLAEAT Trigger: GGTGGCTTCAGCCAGCCCCAAGGCACTCCTTCTCAG...GAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CAA 90 bp | TCAGGCGCTTGTTCCCCACCACCCGGTCAAATAGTTCTCCTCCTTCCATCAGTTAGTGCGATTTCAGAGTaGTTACTCAGAGGACAGCGT | + |
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Preference number: 5 (lower is better) Translates to: SGACSPPPGQIVLLLPSVSAISE*LLRGQR Trigger: ACGCTGTCCTCTGAGTAACAACTCTGAAATCGCACT...AACTGATGGAAGGAGGAGAACTATTTGACCGGGTGGTGGGGAACAAGCGCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS-3UTR CAA 90 bp | GATGGAGAAGACAATTGGAGCGTGGAAGGAAGCACATTTCTTTCACATTCAAAGGCTTCTTTCAGGCGCTaGTTCCCCACCACCCGGTCA | + |
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Preference number: 5 (lower is better) Translates to: DGEDNWSVEGSTFLSHSKASFRR*FPTTRS Trigger: TGACCGGGTGGTGGGGAACAAGCGCCTGAAAGAAGC...CTTTGAATGTGAAAGAAATGTGCTTCCTTCCACGCTCCAATTGTCTTCTCCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAATCTAAAGTGCAGGTCATCAAACAATCAGCCCAGATTTCCACGTTTCTGAGAAGGAGTGCCTaGGGGCTGGCTGAAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: RKKSKVQVIKQSAQISTFLRRSA*GLAEAT Trigger: GGTGGCTTCAGCCAGCCCCAAGGCACTCCTTCTCAG...AAACGTGGAAATCTGGGCTGATTGTTTGATGACCTGCACTTTAGATTTCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CAA 90 bp | ACTGCAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTAGAGCAAACCTCCGCTaGCTAATGATCTTTATGGCC | + |
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Preference number: 5 (lower is better) Translates to: TAALNRSGVNLSTPPPNIRANLR*LMIFMA Trigger: GGCCATAAAGATCATTAGCAAGCGGAGGTTTGCTCT...AATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTGCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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| CDS-3UTR CAA 90 bp | CAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCAGTGCGATTTCAGAGTaGTTACTCAGAGGACAGCGT | + |
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Preference number: 5 (lower is better) Translates to: QPSTGVVLISQHHPLTFFSAISE*LLRGQR Trigger: ACGCTGTCCTCTGAGTAACAACTCTGAAATCGCACT...GAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS-3UTR CAA 90 bp | CAGCCCTCAACAGGAGTGGTGTTAATCTCTCAACACCACCCCCTAACATTTTTCAGGTTCTTCAGGTTCTaGGTCCTCAGGAATAGAACA | + |
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Preference number: 5 (lower is better) Translates to: QPSTGVVLISQHHPLTFFRFFRF*VLRNRT Trigger: TGTTCTATTCCTGAGGACCAAGAACCTGAAGAACCT...GAAAAATGTTAGGGGGTGGTGTTGAGAGATTAACACCACTCCTGTTGAGGGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS CCA 90 bp | ATGCTTCTTGCTGTAAGTCCGGTACTTGTCCGTCCTTCTCAACAGTaGTCCATCGAAGCAATATTCACAGCTTTTATCTCTCCCAAACCA | + |
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Preference number: 5 (lower is better) Translates to: MLLAVSPVLVRPSQQ*SIEAIFTAFISPKP Trigger: TGGTTTGGGAGAGATAAAAGCTGTGAATATTGCTTCGATGGACCACTGTTGAGAAGGACGGACAAGTACCGGACTTACAGCAAGAAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS CCA 72 bp | AGCGAGCTCAGAGTCCCAGAACTGGAGTGCGAGGACTaGCTGGAGGACGGCACTGTGCCGGTAGAGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SELRVPELECED*LEDGTVPVEEL Trigger: CAGCTCCTCTACCGGCACAGTGCCGTCCTCCAGCCAGTCCTCGCACTCCAGTTCTGGGACTCTGAGCTCGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS TCA 72 bp | GCTCGTGCAACTGAGAAGGAGTGCCTTGGGGCTGGCTaGAGCCACCCTGGGACTGTGAACAGGAAGCACTGT | + |
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Preference number: 6 (lower is better) Translates to: ARATEKECLGAG*SHPGTVNRKHC Trigger: ACAGTGCTTCCTGTTCACAGTCCCAGGGTGGCTTCAGCCAGCCCCAAGGCACTCCTTCTCAGTTGCACGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000066160.3 ENSMUST00000198373.2 ENSMUST00000199937.5 ENSMUST00000200172.2 |
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| CDS TCA 72 bp | TGTGCCGGTAGAGGAGCTGGACGAACCCTGATACTGTaGGAGCTCGTGCAACTGAGAAGGAGTGCCTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: CAGRGAGRTLIL*ELVQLRRSALG Trigger: CCCCAAGGCACTCCTTCTCAGTTGCACGAGCTCTCACAGTATCAGGGTTCGTCCAGCTCCTCTACCGGCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS CCA 72 bp | CGAGCCCAAGGGGCAGGACCAGGTTCTTCAGGTTCTTaGTCCTCAGGAATAGAACAGAGTTCCTGGGTAGAC | + |
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Preference number: 6 (lower is better) Translates to: RAQGAGPGSSGS*SSGIEQSSWVD Trigger: GTCTACCCAGGAACTCTGTTCTATTCCTGAGGACCAAGAACCTGAAGAACCTGGTCCTGCCCCTTGGGCTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS CAA 90 bp | CATAGTGAAAGTGCGATTTCAGAGTTGTTACTCAGAGGACAGCGTTaGCCTTTCCCAATAAGCTCGGTATTTACGAAGGTTCCATTTCCA | + |
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Preference number: 6 (lower is better) Translates to: HSESAISELLLRGQR*PFPISSVFTKVPFP Trigger: TGGAAATGGAACCTTCGTAAATACCGAGCTTATTGGGAAAGGCAAACGCTGTCCTCTGAGTAACAACTCTGAAATCGCACTTTCACTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066160.3 ENSMUST00000199937.5 |
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| CDS CAA 90 bp | ACACGCACCACTTTATTTCTACATAGTGAAAGTGCGATTTCAGAGTaGTTACTCAGAGGACAGCGTTTGCCTTTCCCAATAAGCTCGGTA | + |
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Preference number: 6 (lower is better) Translates to: TRTTLFLHSESAISE*LLRGQRLPFPISSV Trigger: TACCGAGCTTATTGGGAAAGGCAAACGCTGTCCTCTGAGTAACAACTCTGAAATCGCACTTTCACTATGTAGAAATAAAGTGGTGCGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199937.5 |
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| CDS CAA 90 bp | AATACAAAAACTTTATTTCTACATAGTGAAAGTGCGATTTCAGAGTaGTTACTCAGAGGACAGCGTTTGCCTTTCCCAATAAGCTCGGTA | + |
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Preference number: 6 (lower is better) Translates to: NTKTLFLHSESAISE*LLRGQRLPFPISSV Trigger: TACCGAGCTTATTGGGAAAGGCAAACGCTGTCCTCTGAGTAACAACTCTGAAATCGCACTTTCACTATGTAGAAATAAAGTTTTTGTATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066160.3 |
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