RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHDH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015970

Ensembl transcript IDs: ENSMUST00000067620.12, ENSMUST00000118917.2

Found 296 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCCTCTCACCTGGACGGTTTCATGAGAGCCAGAGTGGTAGGCGTTaGGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGCTCTT +
Preference number: 1 (lower is better)
Translates to: SLSPGRFHESQSGRR*VVQSPEPSSLCLAL
Trigger: AAGAGCGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGCTCTCATGAAACCGTCCAGGTGAGAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 90 bp CCTTGGAGAGCCCAGTCCAGTTCAACCACCCTGACTTTGCAGGAATaGCCTCAGGTGGGAGACCAGGGAAAGGATCATCCCAGTCCTTCC +
Preference number: 1 (lower is better)
Translates to: PWRAQSSSTTLTLQE*PQVGDQGKDHPSPS
Trigger: GGAAGGACTGGGATGATCCTTTCCCTGGTCTCCCACCTGAGGCCATTCCTGCAAAGTCAGGGTGGTTGAACTGGACTGGGCTCTCCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 90 bp TCTGCAGAAGTAGCTCTGGTGCCTGGGCCATTTCTGGGGCCACCATaGAAGGACCTCGTGGGCTCATGTCCTTGGCATGAGGTAGTGACT +
Preference number: 1 (lower is better)
Translates to: SAEVALVPGPFLGPP*KDLVGSCPWHEVVT
Trigger: AGTCACTACCTCATGCCAAGGACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCACCAGAGCTACTTCTGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR GCA 90 bp CACCTGGACGGTTTCATGAGAGCCAGAGTGGTAGGCGTTGAGTTGTaGAGTCACCTGAGCCCTCGTCCCTGTGCCTCGCTCTTCAGATTT +
Preference number: 1 (lower is better)
Translates to: HLDGFMRARVVGVEL*SHLSPRPCASLFRF
Trigger: AAATCTGAAGAGCGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGCTCTCATGAAACCGTCCAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 90 bp GTCTGGTCATGCTGGCAAGTTGTCCCTGTCTCCATCCATGATCTGTaGCCCTGTCAGGAACACACTTGGCCAACAGTGAGGTGGGCCCAA +
Preference number: 1 (lower is better)
Translates to: VWSCWQVVPVSIHDL*PCQEHTWPTVRWAQ
Trigger: TTGGGCCCACCTCACTGTTGGCCAAGTGTGTTCCTGACAGGGTCACAGATCATGGATGGAGACAGGGACAACTTGCCAGCATGACCAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 90 bp CCAGCTGAGCTGCTACCTGCCTCTTGGCTTCAGCAAAAGCTTCCTTaGAGAGCCCAGTCCAGTTCAACCACCCTGACTTTGCAGGAATGG +
Preference number: 1 (lower is better)
Translates to: PAELLPASWLQQKLP*RAQSSSTTLTLQEW
Trigger: CCATTCCTGCAAAGTCAGGGTGGTTGAACTGGACTGGGCTCTCCAAGGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAGCTCAGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 90 bp CACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGGCAGTaGAGACCTAGGGAGAGGCTCGGTCTCTGGCTTCTGATTTCAGAA +
Preference number: 1 (lower is better)
Translates to: HLSQNPLQLCFPRGQ*RPRERLGLWLLISE
Trigger: TTCTGAAATCAGAAGCCAGAGACCGAGCCTCTCCCTAGGTCTCCACTGCCCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 90 bp CCTTTGAAGGGTCTTCTCAGACTCAGAAGTCCAGAAGGCAGCTCCTaGCAGTCAACCCTAGGGGACCCTGGAATCCTGCTATTTCCTCTC +
Preference number: 1 (lower is better)
Translates to: PLKGLLRLRSPEGSS*QSTLGDPGILLFPL
Trigger: GAGAGGAAATAGCAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCTGAGTCTGAGAAGACCCTTCAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 90 bp AGAACGGAAGCAGGACTGCACCATTCTACCACTCTGTCTCCCTTGTaGCACTGGGACTTCCAGACAACCCCAGCATGTGGATTCAGCACT +
Preference number: 1 (lower is better)
Translates to: RTEAGLHHSTTLSPL*HWDFQTTPACGFST
Trigger: AGTGCTGAATCCACATGCTGGGGTTGTCTGGAAGTCCCAGTGCCACAAGGGAGACAGAGTGGTAGAATGGTGCAGTCCTGCTTCCGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 90 bp GGACTTGCCTCACTGCCTACCATGACCTCATTTCCTCAGAAACCATaGAAGTCTGAGCCAAGAGTCGGGGTATCTGGGTCCCGAGTGTCT +
Preference number: 1 (lower is better)
Translates to: GLASLPTMTSFPQKP*KSEPRVGVSGSRVS
Trigger: AGACACTCGGGACCCAGATACCCCGACTCTTGGCTCAGACTTTCATGGTTTCTGAGGAAATGAGGTCATGGTAGGCAGTGAGGCAAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 90 bp CCTAGGGAGAGGCTCGGTCTCTGGCTTCTGATTTCAGAACAAGGGTaGAGAGTGTGGTTGAATATACAACAGCCCAGCCAGCAGGGGCTT +
Preference number: 1 (lower is better)
Translates to: PRERLGLWLLISEQG*RVWLNIQQPSQQGL
Trigger: AAGCCCCTGCTGGCTGGGCTGTTGTATATTCAACCACACTCTTCACCCTTGTTCTGAAATCAGAAGCCAGAGACCGAGCCTCTCCCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 90 bp TGTGTTCTGGAATGGGTGATCGTTCCCAAAGTCAGCTGTCAACGCTaGCTGGCGTTTCAGGCTGTCCTTCCCGGTATGTCTGCTTTAAGC +
Preference number: 1 (lower is better)
Translates to: CVLEWVIVPKVSCQR*LAFQAVLPGMSALS
Trigger: GCTTAAAGCAGACATACCGGGAAGGACAGCCTGAAACGCCAGGCAGCGTTGACAGCTGACTTTGGGAACGATCACCCATTCCAGAACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 90 bp CAGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTaGAATCCTGCTATTTCCTCTCTCTTCTTCACTCAGCCATGTGAT +
Preference number: 1 (lower is better)
Translates to: QKSRRQLLPVNPRGP*NPAISSLFFTQPCD
Trigger: ATCACATGGCTGAGTGAAGAAGAGAGAGGAAATAGCAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 90 bp GAGTGTCTATATACCGGTTCAGAAATATCTAGGGCAGGGCTGTACTaGCTGGATCTCTTGGCTTGGCCTGAGTTCCTCTGTCGTCCTCAG +
Preference number: 1 (lower is better)
Translates to: ECLYTGSEISRAGLY*LDLLAWPEFLCRPQ
Trigger: CTGAGGACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGAACCGGTATATAGACACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 90 bp GGGAGGATGGAGTGTTGGTTTACTTGTACAAACACCACCAAATCATaGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGG +
Preference number: 1 (lower is better)
Translates to: GRMECWFTCTNTTKS*APLTKPTPAVLSQR
Trigger: CCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTGGTGGTGTTTGTACAAGTAAACCAACACTCCATCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 90 bp CATCAGAGAGACACTGGGAAAAGGGACTTGCCTCACTGCCTACCATaGCCTCATTTCCTCAGAAACCATGAAAGTCTGAGCCAAGAGTCG +
Preference number: 1 (lower is better)
Translates to: HQRDTGKRDLPHCLP*PHFLRNHESLSQES
Trigger: CGACTCTTGGCTCAGACTTTCATGGTTTCTGAGGAAATGAGGTCATGGTAGGCAGTGAGGCAAGTCCCTTTTCCCAGTGTCTCTCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR GCA 90 bp CCCTTGGTCTCCGAGACCGATAGTAACTTCACACCAGCTGCAGAGTaGTGTTCTCCTAAAGGGCTAAACTACCATCAGCATTTACCTTGG +
Preference number: 1 (lower is better)
Translates to: PLVSETDSNFTPAAE*CSPKGLNYHQHLPW
Trigger: CCAAGGTAAATGCTGATGGTAGTTTAGCCCTTTAGGAGAACAGCACTCTGCAGCTGGTGTGAAGTTACTATCGGTCTCGGAGACCAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 90 bp TTTGGCAACATGTGGCCTTCCATGATTGGGGTATTACAGGCTCTTTaGCAAGGAGCCTACTTAACTAAGCCTTTCCAGTTTCCCCAGGAG +
Preference number: 1 (lower is better)
Translates to: FGNMWPSMIGVLQAL*QGAYLTKPFQFPQE
Trigger: CTCCTGGGGAAACTGGAAAGGCTTAGTTAAGTAGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTTGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 90 bp TCCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTaGCCCAAGACTCGAATTCTAGCTGGTTTATCTTTCACTCCAAAG +
Preference number: 1 (lower is better)
Translates to: SRSKSSCKCCWYLLP*PKTRILAGLSFTPK
Trigger: CTTTGGAGTGAAAGATAAACCAGCTAGAATTCGAGTCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR GCA 90 bp CTGTCAACGCTGCCTGGCGTTTCAGGCTGTCCTTCCCGGTATGTCTaGTTTAAGCCTGGTTCAACCTCTCATTTAATATTAAATTTCTCT +
Preference number: 1 (lower is better)
Translates to: LSTLPGVSGCPSRYV*FKPGSTSHLILNFS
Trigger: AGAGAAATTTAATATTAAATGAGAGGTTGAACCAGGCTTAAAGCAGACATACCGGGAAGGACAGCCTGAAACGCCAGGCAGCGTTGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 90 bp GTGTGCTTTTTACTATCTACGATCTTTATCAGCTCTGCCTTTACTTaGGGAGGATGGAGTGTTGGTTTACTTGTACAAACACCACCAAAT +
Preference number: 1 (lower is better)
Translates to: VCFLLSTIFISSAFT*GGWSVGLLVQTPPN
Trigger: ATTTGGTGGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTGATAAAGATCGTAGATAGTAAAAAGCACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 90 bp GGCAGCTTGGCTCAAAAATTAAGTTACCGGTTACATCCAAATTTATaGGGAATTTCCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTAT +
Preference number: 1 (lower is better)
Translates to: GSLAQKLSYRLHPNL*GISRSKSSCKCCWY
Trigger: ATACCAGCAGCATTTACAAGAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAATTTTTGAGCCAAGCTGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCAGGGCTGTACTGGCTaGATCTCTTGGCTTGGCCTG +
Preference number: 2 (lower is better)
Translates to: QGRREVQRGMRRPLAAACQGCTG*ISWLGL
Trigger: CAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTG...ACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATCCAGCCCAGCTGAGCTaGTACCTGCCTCTTGGCTTC +
Preference number: 2 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHPAQLS*YLPLGF
Trigger: GAAGCCAAGAGGCAGGTAGCAGCTCAGCTGGGCTGG...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp TCTCAAACGCCGCTGAGCCTGAGAGGAGAACATGGCCCTCCCAGGGGTGACACCGTAGGCGTTGAGTTGTaGAGTCACCTGAGCCCTCGT +
Preference number: 2 (lower is better)
Translates to: SQTPLSLRGEHGPPRGDTVGVEL*SHLSPR
Trigger: ACGAGGGCTCAGGTGACTGCACAACTCAACGCCTAC...GGTGTCACCCCTGGGAGGGCCATGTTCTCCTCTCAGGCTCAGCGGCGTTTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp CAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTACTGGCTGGATCTCTTaGCTTGGCCTGAGTTCCTCT +
Preference number: 2 (lower is better)
Translates to: QGRREVQRGMRRPLAAACTGWIS*LGLSSS
Trigger: AGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGT...ACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp GAATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTACAGGGCTGTACTGGCTaGATCTCTTGGCTTGGCCTG +
Preference number: 2 (lower is better)
Translates to: EYTTAQPAGASQVTSLGLQGCTG*ISWLGL
Trigger: CAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTG...TAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGTGCCTGGGCCATTTCTaGGGCCACCATGAAAGGACC +
Preference number: 2 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILCLGHF*GHHERT
Trigger: GGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCA...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CAA 90 bp TCTCACCTGGACGGTTTCATGAGAGCCAGAGTGGTAGGCGTTGAGTaGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGCTCTTCAGA +
Preference number: 2 (lower is better)
Translates to: SHLDGFMRARVVGVE*CSHLSPRPCASLFR
Trigger: TCTGAAGAGCGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGCTCTCATGAAACCGTCCAGGTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp TTCCAGACAACCCCAGCATGTGGATTCAGCACTGCAGGCAAGACTCTCCTGCGTCCAGCCCAGCTGAGCTaGTACCTGCCTCTTGGCTTC +
Preference number: 2 (lower is better)
Translates to: FQTTPACGFSTAGKTLLRPAQLS*YLPLGF
Trigger: GAAGCCAAGAGGCAGGTAGCAGCTCAGCTGGGCTGG...ACGCAGGAGAGTCTTGCCTGCAGTGCTGAATCCACATGCTGGGGTTGTCTGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGAGGAATGGCCTCAGGTaGGAGACCAGGGAAAGGATC +
Preference number: 2 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILRNGLR*ETRERI
Trigger: GATCCTTTCCCTGGTCTCCCACCTGAGGCCATTCCT...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR TCA 90 bp AGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGGAAACCATGAAAGTCTaGGCCAAGAGTCGGGGTATC +
Preference number: 2 (lower is better)
Translates to: RVVGVELCSHLSPRPCASETMKV*AKSRGI
Trigger: GATACCCCGACTCTTGGCTCAGACTTTCATGGTTTC...CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATCATCCCAGTCCTTCCTaGAAGCAGAGCTCTGAACTG +
Preference number: 2 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHHPSPS*KQSSEL
Trigger: CAGTTCAGAGCTCTGCTTCCAGGAAGGACTGGGATG...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp ATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTAGGGTTCTCCATCAGCCTTaGTGCCATGCTCTCTGTTCT +
Preference number: 2 (lower is better)
Translates to: IYNSPASRGFAGHQLGPRVLHQP*CHALCS
Trigger: AGAACAGAGAGCATGGCACCAAGGCTGATGGAGAAC...CCTAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CAA 90 bp ACCGGTTCAGAAATATCTAGGGCAGGGCTGTACTGGCTGGATCTCTaGGCTTGGCCTGAGTTCCTCTGTCGTCCTCAGGCAATGGCTGTC +
Preference number: 2 (lower is better)
Translates to: TGSEISRAGLYWLDL*AWPEFLCRPQAMAV
Trigger: GACAGCCATTGCCTGAGGACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGAACCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR TCA 90 bp GAATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTAAGGGGCACGCCAGGTTaGTCTTCGCTTATTCTCAAA +
Preference number: 2 (lower is better)
Translates to: EYTTAQPAGASQVTSLGLRGTPG*SSLILK
Trigger: TTTGAGAATAAGCGAAGATCAACCTGGCGTGCCCCT...TAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGGCATCAGAGAGACACTaGGAAAAGGGACTTGCCTCA +
Preference number: 2 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILASERH*EKGLAS
Trigger: TGAGGCAAGTCCCTTTTCCCAGTGTCTCTCTGATGC...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp ACCAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGGCTAGGGGTCAACCCTaGGGCACATGCTTGCTAGGT +
Preference number: 2 (lower is better)
Translates to: TKSWAPLTKPTPAVLSQRARGQP*GTCLLG
Trigger: ACCTAGCAAGCATGTGCCCCAGGGTTGACCCCTAGC...CCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR TCA 90 bp ATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTAGGTTTCCTCAGAAACCATaGAAGTCTGAGCCAAGAGTC +
Preference number: 2 (lower is better)
Translates to: IYNSPASRGFAGHQLGPRFPQKP*KSEPRV
Trigger: GACTCTTGGCTCAGACTTTCATGGTTTCTGAGGAAA...CCTAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR TCA 90 bp AGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGTTTCCTCAGAAACCATaGAAGTCTGAGCCAAGAGTC +
Preference number: 2 (lower is better)
Translates to: RVVGVELCSHLSPRPCASFPQKP*KSEPRV
Trigger: GACTCTTGGCTCAGACTTTCATGGTTTCTGAGGAAA...CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAACGGCCAGCCCTGTCTaGAGAAGTAGCTCTGGTGCC +
Preference number: 2 (lower is better)
Translates to: PDQRALVNAAGICSPDPRTASPV*RSSSGA
Trigger: GGCACCAGAGCTACTTCTGCAGACAGGGCTGGCCGT...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCTGACTTTGCAGGAATaGCCTCAGGTGGGAGACCAG +
Preference number: 2 (lower is better)
Translates to: RSSDLNQGRREVQRGMRRLTLQE*PQVGDQ
Trigger: CTGGTCTCCCACCTGAGGCCATTCCTGCAAAGTCAG...ACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR TCA 90 bp GAGGAGAACATGGCCCTCCCAGGGGTGACACCTGTGCTGCTAAAGATGCTACGGAAAATGGCCTTTTCTTaGACAACGTCCTGCAAGCCT +
Preference number: 2 (lower is better)
Translates to: EENMALPGVTPVLLKMLRKMAFS*TTSCKP
Trigger: AGGCTTGCAGGACGTTGTTCAAGAAAAGGCCATTTT...CCGTAGCATCTTTAGCAGCACAGGTGTCACCCCTGGGAGGGCCATGTTCTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp CCCTGTGCCTCGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGCTGCTACCTGCCTCTTaGCTTCAGCAAAAGCTTCCT +
Preference number: 2 (lower is better)
Translates to: PCASLFRFKSGQERSAEGLLPAS*LQQKLP
Trigger: AGGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAG...CCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCGAGGCACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR TCA 90 bp ACCAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGCTGGAAGCAGAGCTCTaGACTGGAGACAAGAAAACC +
Preference number: 2 (lower is better)
Translates to: TKSWAPLTKPTPAVLSQRLEAEL*TGDKKT
Trigger: GGTTTTCTTGTCTCCAGTTCAGAGCTCTGCTTCCAG...CCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR TCA 90 bp AACATGTGGCCTTCCATGATTGGGGTATTACAGGCTCTTTGCCAAGGAGCCTACCTAACACCTGCCCTGTaGGGATCTCTTGGCAGACCT +
Preference number: 2 (lower is better)
Translates to: NMWPSMIGVLQALCQGAYLTPAL*GSLGRP
Trigger: AGGTCTGCCAAGAGATCCTCACAGGGCAGGTGTTAG...GTAGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAAGGAATGGCCTCAGGTaGGAGACCAGGGAAAGGATC +
Preference number: 2 (lower is better)
Translates to: PDQRALVNAAGICSPDPRRNGLR*ETRERI
Trigger: GATCCTTTCCCTGGTCTCCCACCTGAGGCCATTCCT...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAACTGGCTGGATCTCTTaGCTTGGCCTGAGTTCCTCT +
Preference number: 2 (lower is better)
Translates to: PDQRALVNAAGICSPDPRTGWIS*LGLSSS
Trigger: AGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGT...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CAGCTCTGCCTTTACTTGGGGAGGATGGAGTGTTGGTTTACTTGTACAAACACCCTGACTTTGCAGGAATaGCCTCAGGTGGGAGACCAG +
Preference number: 2 (lower is better)
Translates to: QLCLYLGRMECWFTCTNTLTLQE*PQVGDQ
Trigger: CTGGTCTCCCACCTGAGGCCATTCCTGCAAAGTCAG...GGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR GCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGGTAGGCGTTGAGTTGTaGAGTCACCTGAGCCCTCGT +
Preference number: 2 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRVGVEL*SHLSPR
Trigger: ACGAGGGCTCAGGTGACTGCACAACTCAACGCCTAC...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGACACTCCAAAGTCCTTTaGTGTTCTCCATCAGCCTTG +
Preference number: 2 (lower is better)
Translates to: PDQRALVNAAGICSPDPRHSKVL*CSPSAL
Trigger: CAAGGCTGATGGAGAACAGCAAAGGACTTTGGAGTG...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp TGTTCTCCATCAGCCTTGGTGCCATGCTCTCTGTTCTCACGTCTAGAGAATAAGGCATCAGAGAGACACTaGGAAAAGGGACTTGCCTCA +
Preference number: 2 (lower is better)
Translates to: CSPSALVPCSLFSRLENKASERH*EKGLAS
Trigger: TGAGGCAAGTCCCTTTTCCCAGTGTCTCTCTGATGC...CTTATTCTCTAGACGTGAGAACAGAGAGCATGGCACCAAGGCTGATGGAGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGCATCCCAGTCCTTCCTaGAAGCAGAGCTCTGAACTG +
Preference number: 2 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRHPSPS*KQSSEL
Trigger: CAGTTCAGAGCTCTGCTTCCAGGAAGGACTGGGATG...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR TCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGGAAACCATGAAAGTCTaGGCCAAGAGTCGGGGTATC +
Preference number: 2 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRETMKV*AKSRGI
Trigger: GATACCCCGACTCTTGGCTCAGACTTTCATGGTTTC...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGCTGCTACCTGCCTCTTaGCTTCAGCAAAAGCTTCCT +
Preference number: 2 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRLLPAS*LQQKLP
Trigger: AGGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAG...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGCACTCCAAAGTCCTTTaGTGTTCTCCATCAGCCTTG +
Preference number: 2 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRHSKVL*CSPSAL
Trigger: CAAGGCTGATGGAGAACAGCAAAGGACTTTGGAGTG...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR GCA 90 bp TCAGCAGATCACACTCACGTGTGTTCTGGAATGGGTGATCGTTCCCAAAGTCAGGTATTACAGGCTCTTTaGCAAGGAGCCTACTTAACT +
Preference number: 2 (lower is better)
Translates to: SADHTHVCSGMGDRSQSQVLQAL*QGAYLT
Trigger: AGTTAAGTAGGCTCCTTGGCAAAGAGCCTGTAATAC...CTGACTTTGGGAACGATCACCCATTCCAGAACACACGTGAGTGTGATCTGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp GTTCTTCAGAATAAACTCTGTATAATGTCATCATATGGGGAGCTCTCCTCACACCTGGATCTCTTGGCTTaGCCTGAGTTCCTCTGTCGT +
Preference number: 2 (lower is better)
Translates to: VLQNKLCIMSSYGELSSHLDLLA*PEFLCR
Trigger: ACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAG...GTGTGAGGAGAGCTCCCCATATGATGACATTATACAGAGTTTATTCTGAAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCAGTAGCTCTGGTGCCTaGGCCATTTCTGGGGCCACC +
Preference number: 2 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELSSSGA*AISGAT
Trigger: GGTGGCCCCAGAAATGGCCCAGGCACCAGAGCTACT...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp TCAGCAGATCACACTCACGTGTGTTCTGGAATGGGTGATCGTTCCCAAAGTCAGAGGGATGTAGTATGGTaGGTGAGAAGAATCTATTTG +
Preference number: 2 (lower is better)
Translates to: SADHTHVCSGMGDRSQSQRDVVW*VRRIYL
Trigger: CAAATAGATTCTTCTCACCCACCATACTACATCCCT...CTGACTTTGGGAACGATCACCCATTCCAGAACACACGTGAGTGTGATCTGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR TCA 90 bp GCTATTTCCTCTCTCTTCTTCACTCAGCCATGTGATTTCTATACAGCGATCCCTAAAATGGCCTTTTCTTaGACAACGTCCTGCAAGCCT +
Preference number: 2 (lower is better)
Translates to: AISSLFFTQPCDFYTAIPKMAFS*TTSCKP
Trigger: AGGCTTGCAGGACGTTGTTCAAGAAAAGGCCATTTT...AGGGATCGCTGTATAGAAATCACATGGCTGAGTGAAGAAGAGAGAGGAAATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CCA 90 bp TCGCAAACCTCTTCGGAAGACATTCTTACTCCAGATGCAGGCAAAAACACTTCAAGCAGAGCTCTGAACTaGAGACAAGAAAACCATGTT +
Preference number: 2 (lower is better)
Translates to: SQTSSEDILTPDAGKNTSSRALN*RQENHV
Trigger: AACATGGTTTTCTTGTCTCCAGTTCAGAGCTCTGCT...TGAAGTGTTTTTGCCTGCATCTGGAGTAAGAATGTCTTCCGAAGAGGTTTGCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CCA 90 bp GTTCTTCAGAATAAACTCTGTATAATGTCATCATATGGGGAGCTCTCCTCACACGCAGTGAGGCCAAAATaGCCTTTTCTTGAACAACGT +
Preference number: 2 (lower is better)
Translates to: VLQNKLCIMSSYGELSSHAVRPK*PFLEQR
Trigger: ACGTTGTTCAAGAAAAGGCCATTTTGGCCTCACTGC...GTGTGAGGAGAGCTCCCCATATGATGACATTATACAGAGTTTATTCTGAAGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR TCA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCTGGTATCTGCTCCCCTaGCCCAAGACTCGAATTCTA +
Preference number: 2 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELWYLLP*PKTRIL
Trigger: TAGAATTCGAGTCTTGGGTCAGGGGAGCAGATACCA...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CAA 90 bp TCTCAAACGCCGCTGAGCCTGAGAGGAGAACATGGCCCTCCCAGGGGTGACACCGTGGTAGGCGTTGAGTaGTGCAGTCACCTGAGCCCT +
Preference number: 3 (lower is better)
Translates to: SQTPLSLRGEHGPPRGDTVVGVE*CSHLSP
Trigger: AGGGCTCAGGTGACTGCACAACTCAACGCCTACCAC...GGTGTCACCCCTGGGAGGGCCATGTTCTCCTCTCAGGCTCAGCGGCGTTTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp ACGGCCAGCCCTGTCTGCAGAAGTAGCTCTGGTGCCTaGGCCATTTCTGGGGCCACCATGAAAGGACCTCGT +
Preference number: 3 (lower is better)
Translates to: TASPVCRSSSGA*AISGATMKGPR
Trigger: ACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCACCAGAGCTACTTCTGCAGACAGGGCTGGCCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp GGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTaGGTTCCTCTGTCGTCCTCAGGCAATGGCTGTCTG +
Preference number: 3 (lower is better)
Translates to: GRAVLAGSLGLA*VPLSSSGNGCL
Trigger: CAGACAGCCATTGCCTGAGGACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp CCTGGACGGTTTCATGAGAGCCAGAGTGGTAGGCGTTaGGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGC +
Preference number: 3 (lower is better)
Translates to: PGRFHESQSGRR*VVQSPEPSSLC
Trigger: GCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGCTCTCATGAAACCGTCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp GTAGCTCTGGTGCCTGGGCCATTTCTGGGGCCACCATaGAAGGACCTCGTGGGCTCATGTCCTTGGCATGAG +
Preference number: 3 (lower is better)
Translates to: VALVPGPFLGPP*KDLVGSCPWHE
Trigger: CTCATGCCAAGGACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCACCAGAGCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR GCA 72 bp GGTTTCATGAGAGCCAGAGTGGTAGGCGTTGAGTTGTaGAGTCACCTGAGCCCTCGTCCCTGTGCCTCGCTC +
Preference number: 3 (lower is better)
Translates to: GFMRARVVGVEL*SHLSPRPCASL
Trigger: GAGCGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGCTCTCATGAAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp AGCTTCCTTGGAGAGCCCAGTCCAGTTCAACCACCCTaGCTTTGCAGGAATGGCCTCAGGTGGGAGACCAGG +
Preference number: 3 (lower is better)
Translates to: SFLGEPSPVQPP*LCRNGLRWETR
Trigger: CCTGGTCTCCCACCTGAGGCCATTCCTGCAAAGTCAGGGTGGTTGAACTGGACTGGGCTCTCCAAGGAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 72 bp TCTAGGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTaGCCTGAGTTCCTCTGTCGTCCTCAGGCAATGGCT +
Preference number: 3 (lower is better)
Translates to: SRAGLYWLDLLA*PEFLCRPQAMA
Trigger: AGCCATTGCCTGAGGACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 72 bp GCAGGACTGCACCATTCTACCACTCTGTCTCCCTTGTaGCACTGGGACTTCCAGACAACCCCAGCATGTGGA +
Preference number: 3 (lower is better)
Translates to: AGLHHSTTLSPL*HWDFQTTPACG
Trigger: TCCACATGCTGGGGTTGTCTGGAAGTCCCAGTGCCACAAGGGAGACAGAGTGGTAGAATGGTGCAGTCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 72 bp CAGCATGTGGATTCAGCACTGCAGGCAAGACTCTCCTaGGTGTTCATCCGTTCTGTTTGGGCTGGAACCTGG +
Preference number: 3 (lower is better)
Translates to: QHVDSALQARLS*VFIRSVWAGTW
Trigger: CCAGGTTCCAGCCCAAACAGAACGGATGAACACGCAGGAGAGTCTTGCCTGCAGTGCTGAATCCACATGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp CTGCACCATTCTACCACTCTGTCTCCCTTGTGGCACTaGGACTTCCAGACAACCCCAGCATGTGGATTCAGC +
Preference number: 3 (lower is better)
Translates to: LHHSTTLSPLWH*DFQTTPACGFS
Trigger: GCTGAATCCACATGCTGGGGTTGTCTGGAAGTCCCAGTGCCACAAGGGAGACAGAGTGGTAGAATGGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CAA 90 bp CGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTGCTGCTACCTGCCTCTaGGCTTCAGCAAAAGCTTCC +
Preference number: 3 (lower is better)
Translates to: RSSDLNQGRREVQRGMRRAATCL*ASAKAS
Trigger: GGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAGC...ACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CAA 90 bp CAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGGCTGTTCTCCATCAGCCTaGGTGCCATGCTCTCTGTTC +
Preference number: 3 (lower is better)
Translates to: QIMGTSHKTHSSCAFPEGCSPSA*VPCSLF
Trigger: GAACAGAGAGCATGGCACCAAGGCTGATGGAGAACA...GCCCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 72 bp CTGGTCATGCTGGCAAGTTGTCCCTGTCTCCATCCATaGTCTGTGACCCTGTCAGGAACACACTTGGCCAAC +
Preference number: 3 (lower is better)
Translates to: LVMLASCPCLHP*SVTLSGTHLAN
Trigger: GTTGGCCAAGTGTGTTCCTGACAGGGTCACAGATCATGGATGGAGACAGGGACAACTTGCCAGCATGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp AAATATCTAGGGCAGGGCTGTACTGGCTGGATCTCTTaGCTTGGCCTGAGTTCCTCTGTCGTCCTCAGGCAA +
Preference number: 3 (lower is better)
Translates to: KYLGQGCTGWIS*LGLSSSVVLRQ
Trigger: TTGCCTGAGGACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 72 bp CTGCTACCTGCCTCTTGGCTTCAGCAAAAGCTTCCTTaGAGAGCCCAGTCCAGTTCAACCACCCTGACTTTG +
Preference number: 3 (lower is better)
Translates to: LLPASWLQQKLP*RAQSSSTTLTL
Trigger: CAAAGTCAGGGTGGTTGAACTGGACTGGGCTCTCCAAGGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CAA 90 bp TCTCAAACGCCGCTGAGCCTGAGAGGAGAACATGGCCCTCCCAGGGGTGACACCAGACCTAGGATTTCCTaGATCTTCTTTTTGAACAGG +
Preference number: 3 (lower is better)
Translates to: SQTPLSLRGEHGPPRGDTRPRIS*IFFLNR
Trigger: CCTGTTCAAAAAGAAGATCAAGGAAATCCTAGGTCT...GGTGTCACCCCTGGGAGGGCCATGTTCTCCTCTCAGGCTCAGCGGCGTTTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 72 bp CTAATTGGGGACATAAGCTCAGGTAACCAGCCCAGCTaGGCTGCTACCTGCCTCTTGGCTTCAGCAAAAGCT +
Preference number: 3 (lower is better)
Translates to: LIGDISSGNQPS*AATCLLASAKA
Trigger: AGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAGCTCAGCTGGGCTGGTTACCTGAGCTTATGTCCCCAATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR GCA 72 bp TGGAGGGGCATCAGAGAGACACTGGGAAAAGGGACTTaGCTCACTGCCTACCATGACCTCATTTCCTCAGAA +
Preference number: 3 (lower is better)
Translates to: WRGIRETLGKGT*LTAYHDLISSE
Trigger: TTCTGAGGAAATGAGGTCATGGTAGGCAGTGAGGCAAGTCCCTTTTCCCAGTGTCTCTCTGATGCCCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp TCACTGCCTACCATGACCTCATTTCCTCAGAAACCATaGAAGTCTGAGCCAAGAGTCGGGGTATCTGGGTCC +
Preference number: 3 (lower is better)
Translates to: SLPTMTSFPQKP*KSEPRVGVSGS
Trigger: GGACCCAGATACCCCGACTCTTGGCTCAGACTTTCATGGTTTCTGAGGAAATGAGGTCATGGTAGGCAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp GTGCAGGTACTGGTTTTGGCAACATGTGGCCTTCCATaGTTGGGGTATTACAGGCTCTTTGCCAAGGAGCCT +
Preference number: 3 (lower is better)
Translates to: VQVLVLATCGLP*LGYYRLFAKEP
Trigger: AGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTTGCCAAAACCAGTACCTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 72 bp GCTCATGTGTTACAGTGTCCCCACCTTCTGCTTCTATaGCTGTGTCTGGTCATGCTGGCAAGTTGTCCCTGT +
Preference number: 3 (lower is better)
Translates to: AHVLQCPHLLLL*LCLVMLASCPC
Trigger: ACAGGGACAACTTGCCAGCATGACCAGACACAGTCATAGAAGCAGAAGGTGGGGACACTGTAACACATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp TATACCGGTTCAGAAATATCTAGGGCAGGGCTGTACTaGCTGGATCTCTTGGCTTGGCCTGAGTTCCTCTGT +
Preference number: 3 (lower is better)
Translates to: YTGSEISRAGLY*LDLLAWPEFLC
Trigger: ACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGAACCGGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 72 bp CTCATGTTCTGTCCCGATGTCGCCATCTGTGAGTTCTaGGCACGTAACATCGACTTCTTGTCTCGGGAAACT +
Preference number: 3 (lower is better)
Translates to: LMFCPDVAICEF*ARNIDFLSRET
Trigger: AGTTTCCCGAGACAAGAAGTCGATGTTACGTGCCCAGAACTCACAGATGGCGACATCGGGACAGAACATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp TACAGTGTCCCCACCTTCTGCTTCTATGACTGTGTCTaGTCATGCTGGCAAGTTGTCCCTGTCTCCATCCAT +
Preference number: 3 (lower is better)
Translates to: YSVPTFCFYDCV*SCWQVVPVSIH
Trigger: ATGGATGGAGACAGGGACAACTTGCCAGCATGACCAGACACAGTCATAGAAGCAGAAGGTGGGGACACTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 72 bp GACACTGGGAAAAGGGACTTGCCTCACTGCCTACCATaGCCTCATTTCCTCAGAAACCATGAAAGTCTGAGC +
Preference number: 3 (lower is better)
Translates to: DTGKRDLPHCLP*PHFLRNHESLS
Trigger: GCTCAGACTTTCATGGTTTCTGAGGAAATGAGGTCATGGTAGGCAGTGAGGCAAGTCCCTTTTCCCAGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp ACTCGTTTCCTTATGTGGCTAAATCATGTCAGCACGTaGAGCCAGCCTCCCTATGCCGAAGTGAGAGAAAGG +
Preference number: 3 (lower is better)
Translates to: TRFLMWLNHVST*SQPPYAEVRER
Trigger: CCTTTCTCTCACTTCGGCATAGGGAGGCTGGCTTCACGTGCTGACATGATTTAGCCACATAAGGAAACGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 72 bp AGGCTCGGTCTCTGGCTTCTGATTTCAGAACAAGGGTaGAGAGTGTGGTTGAATATACAACAGCCCAGCCAG +
Preference number: 3 (lower is better)
Translates to: RLGLWLLISEQG*RVWLNIQQPSQ
Trigger: CTGGCTGGGCTGTTGTATATTCAACCACACTCTTCACCCTTGTTCTGAAATCAGAAGCCAGAGACCGAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CAA 90 bp GCTATTTCCTCTCTCTTCTTCACTCAGCCATGTGATTTCTATACAGCGATCCCTGCTGCTACCTGCCTCTaGGCTTCAGCAAAAGCTTCC +
Preference number: 3 (lower is better)
Translates to: AISSLFFTQPCDFYTAIPAATCL*ASAKAS
Trigger: GGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAGC...AGGGATCGCTGTATAGAAATCACATGGCTGAGTGAAGAAGAGAGAGGAAATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp AAAGGATCATCCCAGTCCTTCCTGGAAGCAGAGCTCTaGACTGGAGACAAGAAAACCATGTTAGCTACCCCA +
Preference number: 3 (lower is better)
Translates to: KGSSQSFLEAEL*TGDKKTMLATP
Trigger: TGGGGTAGCTAACATGGTTTTCTTGTCTCCAGTTCAGAGCTCTGCTTCCAGGAAGGACTGGGATGATCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 72 bp AGGTACTGGTTTTGGCAACATGTGGCCTTCCATGATTaGGGTATTACAGGCTCTTTGCCAAGGAGCCTACTT +
Preference number: 3 (lower is better)
Translates to: RYWFWQHVAFHD*GITGSLPRSLL
Trigger: AAGTAGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTTGCCAAAACCAGTACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR-3UTR CAA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGTCACTCCAAAGTCCTTaGCTGTTCTCCATCAGCCTT +
Preference number: 3 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRSLQSP*LFSISL
Trigger: AAGGCTGATGGAGAACAGCAAAGGACTTTGGAGTGA...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR GCA 72 bp CTGCCTGGCGTTTCAGGCTGTCCTTCCCGGTATGTCTaGTTTAAGCCTGGTTCAACCTCTCATTTAATATTA +
Preference number: 3 (lower is better)
Translates to: LPGVSGCPSRYV*FKPGSTSHLIL
Trigger: TAATATTAAATGAGAGGTTGAACCAGGCTTAAAGCAGACATACCGGGAAGGACAGCCTGAAACGCCAGGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp GAGTGTTGGTTTACTTGTACAAACACCACCAAATCATaGGCACCTCTCACAAAACCCACTCCAGCTGTGCTT +
Preference number: 3 (lower is better)
Translates to: ECWFTCTNTTKS*APLTKPTPAVL
Trigger: AAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTGGTGGTGTTTGTACAAGTAAACCAACACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR TCA 72 bp TGGTGGGTGAGAAGAATCTATTTGAATGTATGGAAATaGGGCAGGGCTCATGTGTTACAGTGTCCCCACCTT +
Preference number: 3 (lower is better)
Translates to: WWVRRIYLNVWK*GRAHVLQCPHL
Trigger: AAGGTGGGGACACTGTAACACATGAGCCCTGCCTCATTTCCATACATTCAAATAGATTCTTCTCACCCACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 72 bp AATTCTAGCTGGTTTATCTTTCACTCCAAAGTCCTTTaGTGTTCTCCATCAGCCTTGGTGCCATGCTCTCTG +
Preference number: 3 (lower is better)
Translates to: NSSWFIFHSKVL*CSPSALVPCSL
Trigger: CAGAGAGCATGGCACCAAGGCTGATGGAGAACAGCAAAGGACTTTGGAGTGAAAGATAAACCAGCTAGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CCA 72 bp GTATCTGCTCCCCTGACCCAAGACTCGAATTCTAGCTaGTTTATCTTTCACTCCAAAGTCCTTTGCTGTTCT +
Preference number: 3 (lower is better)
Translates to: VSAPLTQDSNSS*FIFHSKVLCCS
Trigger: AGAACAGCAAAGGACTTTGGAGTGAAAGATAAACCAGCTAGAATTCGAGTCTTGGGTCAGGGGAGCAGATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR-3UTR CAA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCGTGGTAGGCGTTGAGTaGTGCAGTCACCTGAGCCCT +
Preference number: 3 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELVVGVE*CSHLSP
Trigger: AGGGCTCAGGTGACTGCACAACTCAACGCCTACCAC...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR TCA 72 bp CCTGCTTTTAATGACATTAAAAGGTGGAAGTCACTATaGTCTGCTCACCGTCAGCAAGAACCTCATTTGGGA +
Preference number: 3 (lower is better)
Translates to: PAFNDIKRWKSL*SAHRQQEPHLG
Trigger: TCCCAAATGAGGTTCTTGCTGACGGTGAGCAGATCATAGTGACTTCCACCTTTTAATGTCATTAAAAGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 72 bp GTGGTCCAGCTCTTAAGCCAGATCGGCTCTATTTTGTaGTGTGTGCTTTTTACTATCTACGATCTTTATCAG +
Preference number: 3 (lower is better)
Translates to: VVQLLSQIGSIL*CVLFTIYDLYQ
Trigger: CTGATAAAGATCGTAGATAGTAAAAAGCACACAGCACAAAATAGAGCCGATCTGGCTTAAGAGCTGGACCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR GCA 72 bp TGTGTGCTTTTTACTATCTACGATCTTTATCAGCTCTaGCTTTACTTGGGGAGGATGGAGTGTTGGTTTACT +
Preference number: 3 (lower is better)
Translates to: CVLFTIYDLYQL*LYLGRMECWFT
Trigger: AGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTGATAAAGATCGTAGATAGTAAAAAGCACACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CCA 72 bp AAATATGAAAAATCTTGGGGCCTGAGGGATGTAGTATaGTGGGTGAGAAGAATCTATTTGAATGTATGGAAA +
Preference number: 3 (lower is better)
Translates to: KYEKSWGLRDVV*WVRRIYLNVWK
Trigger: TTTCCATACATTCAAATAGATTCTTCTCACCCACCATACTACATCCCTCAGGCCCCAAGATTTTTCATATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCCGTCAACCACGGCAGTaGGGTCAGAGGACCGGCCCA +
Preference number: 4 (lower is better)
Translates to: ARVVGVELCSHLSPRPCARQPRQ*GQRTGP
Trigger: TGGGCCGGTCCTCTGACCCCACTGCCGTGGTTGACG...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp TCTCAAACGCCGCTGAGCCTGAGAGGAGAACATGGCCCTCCCAGGGGTGACACCGCCACTCCAGGCCGATaGAGACCTTCCGCAGAGGCT +
Preference number: 4 (lower is better)
Translates to: SQTPLSLRGEHGPPRGDTATPGR*RPSAEA
Trigger: AGCCTCTGCGGAAGGTCTGCATCGGCCTGGAGTGGC...GGTGTCACCCCTGGGAGGGCCATGTTCTCCTCTCAGGCTCAGCGGCGTTTGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCGCTCCACGTGGGCTCTaGCATCCTTTCCTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: ARVVGVELCSHLSPRPCAAPRGL*HPFLQP
Trigger: AGGCTGGAGGAAAGGATGGCAGAGCCCACGTGGAGC...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTGCGGGTGGTTGGTCTTaGCCCGAGACACATGCAGTG +
Preference number: 4 (lower is better)
Translates to: QGRREVQRGMRRPLAAACAGGWS*PETHAV
Trigger: CACTGCATGTGTCTCGGGGCAAGACCAACCACCCGC...ACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GAATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTAGCCAGCCTGACGTGCTaGCTGCAGGAAGGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: EYTTAQPAGASQVTSLGLASLTC*LQEGLV
Trigger: CACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGC...TAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATATTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGGCCAGCCTGACGTGCTaGCTGCAGGAAGGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILASLTC*LQEGLV
Trigger: CACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGC...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp AGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGGCCACTCCAGGCCGATaGAGACCTTCCGCAGAGGCT +
Preference number: 4 (lower is better)
Translates to: RVVGVELCSHLSPRPCASATPGR*RPSAEA
Trigger: AGCCTCTGCGGAAGGTCTGCATCGGCCTGGAGTGGC...CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATGCAGCTGTGGAGAGTTaGTGGCTCCCCCGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHAAVES*WLPRSG
Trigger: TCCTGAGCGGGGGAGCCATCAACTCTCCACAGCTGC...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TGGAGACAAGAAAACCATGTTAGCTACCCCACCTGCTACCCGCAGGCAGCCAGGCCAGACCCGGCCTCGTaGCCAGTACAGCACGCGACT +
Preference number: 4 (lower is better)
Translates to: WRQENHVSYPTCYPQAARPDPAS*PVQHAT
Trigger: AGTCGCGTGCTGTACTGGCCACGAGGCCGGGTCTGG...CCTGGCTGCCTGCGGGTAGCAGGTGGGGTAGCTAACATGGTTTTCTTGTCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp AGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGTGTAGACCATGGCATTaGGGGATGAGGAGCCACCCC +
Preference number: 4 (lower is better)
Translates to: RVVGVELCSHLSPRPCASCRPWH*GMRSHP
Trigger: GGGGTGGCTCCTCATCCCTCAATGCCATGGTCTACA...CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp CTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCCTTGGCTGTAGACCATGGCATTaGGGGATGAGGAGCCACCCC +
Preference number: 4 (lower is better)
Translates to: LGHFWGHHERTSWAHVLGCRPWH*GMRSHP
Trigger: GGGGTGGCTCCTCATCCCTCAATGCCATGGTCTACA...GCCAAGGACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GAGGAGAACATGGCCCTCCCAGGGGTGACACCTGTGCTGCTAAAGATGCTACGGACAGCCAGCAGAGCCTaGGCCCACCACCACAAAGGT +
Preference number: 4 (lower is better)
Translates to: EENMALPGVTPVLLKMLRTASRA*AHHHKG
Trigger: ACCTTTGTGGTGGTGGGCGCAGGCTCTGCTGGCTGT...CCGTAGCATCTTTAGCAGCACAGGTGTCACCCCTGGGAGGGCCATGTTCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp AGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGCATGTCTCTGCGCCTTaGGGAAGTAGGGCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: RVVGVELCSHLSPRPCASHVSAP*GSRAGS
Trigger: ACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACATG...CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCCTTGGCCACCTACTGCACGGGTaGCCTCAAACAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: LGHFWGHHERTSWAHVLGHLLHG*PQTALC
Trigger: GCAGAGTGCTGTTTGAGGGCACCCGTGCAGTAGGTG...GCCAAGGACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTAAGCTTCCTGCTGGGTaGGTTTCCGCCCATGGTCAA +
Preference number: 4 (lower is better)
Translates to: QGRREVQRGMRRPLAAACKLPAG*VSAHGQ
Trigger: TTGACCATGGGCGGAAACCCACCCAGCAGGAAGCTT...ACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp GAATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTAGGATGGATCACAGGGTaGTCCCGGGGGTTGGCACTT +
Preference number: 4 (lower is better)
Translates to: EYTTAQPAGASQVTSLGLGWITG*SRGLAL
Trigger: AAGTGCCAACCCCCGGGACCACCCTGTGATCCATCC...TAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATATTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCCTGCAATCATTACCGTaGGAGCGTTCAGGTTGCCGC +
Preference number: 4 (lower is better)
Translates to: ARVVGVELCSHLSPRPCALQSLP*ERSGCR
Trigger: GCGGCAACCTGAACGCTCCCACGGTAATGATTGCAG...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CAA 72 bp GACGGTTTCATGAGAGCCAGAGTGGTAGGCGTTGAGTaGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCG +
Preference number: 4 (lower is better)
Translates to: DGFMRARVVGVE*CSHLSPRPCAS
Trigger: CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGCTCTCATGAAACCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp GGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGTTCCTCTGTCGTCATGTGGATCTTCCACTaGAGCCGCTTGCTCCCCATC +
Preference number: 4 (lower is better)
Translates to: GQGCTGWISWLGLSSSVVMWIFH*SRLLPI
Trigger: GATGGGGAGCAAGCGGCTTCAGTGGAAGATCCACAT...GACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GAATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTACATGTCTCTGCGCCTTaGGGAAGTAGGGCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: EYTTAQPAGASQVTSLGLHVSAP*GSRAGS
Trigger: ACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACATG...TAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGACCTCCAGGTGGTCCTaGAGGTTCTGCCCAACTCCA +
Preference number: 4 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILTSRWS*RFCPTP
Trigger: TGGAGTTGGGCAGAACCTGCAGGACCACCTGGAGGT...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCGTGGTAAGCACTGTCTaGTTTTGCCCGCACAAAGGC +
Preference number: 4 (lower is better)
Translates to: ARVVGVELCSHLSPRPCAVVSTV*FCPHKG
Trigger: GCCTTTGTGCGGGCAAAAGCAGACAGTGCTTACCAC...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTGTGGTAAGCACTGTCTaGTTTTGCCCGCACAAAGGC +
Preference number: 4 (lower is better)
Translates to: QGRREVQRGMRRPLAAACVVSTV*FCPHKG
Trigger: GCCTTTGTGCGGGCAAAAGCAGACAGTGCTTACCAC...ACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATCCGATGACCTTGGTTTaGGCGTCAACCACGGCAGTG +
Preference number: 4 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHPMTLV*ASTTAV
Trigger: CACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGG...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGCCGATGACCTTGGTTTaGGCGTCAACCACGGCAGTG +
Preference number: 4 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILPMTLV*ASTTAV
Trigger: CACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGG...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TGGTGCCTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCCTGCTTACAAGTGTCTaGACCTCGGCCCTGAGGTTG +
Preference number: 4 (lower is better)
Translates to: WCLGHFWGHHERTSWAHVLLTSV*TSALRL
Trigger: CAACCTCAGGGCCGAGGTCCAGACACTTGTAAGCAG...GACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGGAGCATGAGCAGCTGTaGAGAGTTGATGGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILEHEQL*RVDGSP
Trigger: GGGGGAGCCATCAACTCTCCACAGCTGCTCATGCTC...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATCCAACTCCAGGCAGGTaGCACACCACAGGGATATCC +
Preference number: 4 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHPTPGR*HTTGIS
Trigger: GGATATCCCTGTGGTGTGCCACCTGCCTGGAGTTGG...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCCGTCAACCACGGCAGTaGGGTCAGAGGACCGGCCCA +
Preference number: 4 (lower is better)
Translates to: LFRFKSGQERSAEGDEASRQPRQ*GQRTGP
Trigger: TGGGCCGGTCCTCTGACCCCACTGCCGTGGTTGACG...GGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp CTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCGGGCAGAGTGGAGGGTaGTGGGCTGTGTGCACGCTT +
Preference number: 4 (lower is better)
Translates to: LFRFKSGQERSAEGDEASGQSGG*WAVCTL
Trigger: AAGCGTGCACACAGCCCATCACCCTCCACTCTGCCC...GGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp CGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTGGGCAGAGTGGAGGGTaGTGGGCTGTGTGCACGCTT +
Preference number: 4 (lower is better)
Translates to: RSSDLNQGRREVQRGMRRGQSGG*WAVCTL
Trigger: AAGCGTGCACACAGCCCATCACCCTCCACTCTGCCC...ACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp CTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCAACTGGATGTCCGGATaGGGGACCCCAGGTCGGCTG +
Preference number: 4 (lower is better)
Translates to: LFRFKSGQERSAEGDEASNWMSG*GTPGRL
Trigger: CAGCCGACCTGGGGTCCCTCATCCGGACATCCAGTT...GGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGGCGCTCCACGTGGGCTCTaGCATCCTTTCCTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: QIMGTSHKTHSSCAFPEGAPRGL*HPFLQP
Trigger: AGGCTGGAGGAAAGGATGGCAGAGCCCACGTGGAGC...GCCCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAGGGCATGGCTGGCCCTaGACAGCCCATGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: PDQRALVNAAGICSPDPRGHGWP*TAHARA
Trigger: AGCCCTGGCATGGGCTGTGCAGGGCCAGCCATGCCC...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATGTACTCCACACCTACTaGACGGGTGCCCTCAAACAG +
Preference number: 4 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHVLHTY*TGALKQ
Trigger: CTGTTTGAGGGCACCCGTGCAGTAGGTGTGGAGTAC...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCCCATGGTCAATCACTTaGGATGGCAGGAAGTGGAAC +
Preference number: 4 (lower is better)
Translates to: ARVVGVELCSHLSPRPCAPWSIT*DGRKWN
Trigger: GTTCCACTTCCTGCCATCGCAAGTGATTGACCATGG...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GGGGCATCAGAGAGACACTGGGAAAAGGGACTTGCCTCACTGCCTACCATGACCGGCCCATCTTACAGGTaGACGAGGGGTGGTAAGCAC +
Preference number: 4 (lower is better)
Translates to: GASERHWEKGLASLPTMTGPSYR*TRGGKH
Trigger: GTGCTTACCACCCCTCGTGCACCTGTAAGATGGGCC...GGTCATGGTAGGCAGTGAGGCAAGTCCCTTTTCCCAGTGTCTCTCTGATGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp TGGAGACAAGAAAACCATGTTAGCTACCCCACCTGCTACCCGCAGGCAGCCAGGGGCCCATCTTACAGGTaGACGAGGGGTGGTAAGCAC +
Preference number: 4 (lower is better)
Translates to: WRQENHVSYPTCYPQAARGPSYR*TRGGKH
Trigger: GTGCTTACCACCCCTCGTGCACCTGTAAGATGGGCC...CCTGGCTGCCTGCGGGTAGCAGGTGGGGTAGCTAACATGGTTTTCTTGTCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TCAGAAATATCTAGGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGCCGAGACACATGCAGTaGGCCATCCCCACCGCGGTA +
Preference number: 4 (lower is better)
Translates to: SEISRAGLYWLDLLAWPEPRHMQ*AIPTAV
Trigger: TACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGG...CTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCCCGAAGCCCTCCTGTTaGAAGCCATTCATGTCTTCA +
Preference number: 4 (lower is better)
Translates to: ARVVGVELCSHLSPRPCAPKPSC*KPFMSS
Trigger: TGAAGACATGAATGGCTTCCAACAGGAGGGCTTCGG...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATGTGGGTTTCCGCCCATaGTCAATCACTTGCGATGGC +
Preference number: 4 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHVGFRP*SITCDG
Trigger: GCCATCGCAAGTGATTGACCATGGGCGGAAACCCAC...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATAAGCTTCCTGCTGGGTaGGTTTCCGCCCATGGTCAA +
Preference number: 4 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHKLPAG*VSAHGQ
Trigger: TTGACCATGGGCGGAAACCCACCCAGCAGGAAGCTT...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CCCTGTGCCTCGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGCCAGCCCACACTTGTaGCCCTCATGGTTCCCACGT +
Preference number: 4 (lower is better)
Translates to: PCASLFRFKSGQERSAEGASPHL*PSWFPR
Trigger: ACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGC...CCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCGAGGCACAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTGGAGCCAAGGCTTCCTaGGCAAAAATTTCTCGTGAC +
Preference number: 4 (lower is better)
Translates to: QGRREVQRGMRRPLAAACGAKAS*AKISRD
Trigger: GTCACGAGAAATTTTTGCCCAGGAAGCCTTGGCTCC...ACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CAA 72 bp CCTTGGAGAGCCCAGTCCAGTTCAACCACCCTGACTTaGCAGGAATGGCCTCAGGTGGGAGACCAGGGAAAG +
Preference number: 4 (lower is better)
Translates to: PWRAQSSSTTLT*QEWPQVGDQGK
Trigger: CTTTCCCTGGTCTCCCACCTGAGGCCATTCCTGCAAAGTCAGGGTGGTTGAACTGGACTGGGCTCTCCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTGCGGGTGGTTGGTCTTaGCCCGAGACACATGCAGTG +
Preference number: 4 (lower is better)
Translates to: RSSDLNQGRREVQRGMRRAGGWS*PETHAV
Trigger: CACTGCATGTGTCTCGGGGCAAGACCAACCACCCGC...ACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TCAGCAGATCACACTCACGTGTGTTCTGGAATGGGTGATCGTTCCCAAAGTCAGCCAGACCCGGCCTCGTaGCCAGTACAGCACGCGACT +
Preference number: 4 (lower is better)
Translates to: SADHTHVCSGMGDRSQSQPDPAS*PVQHAT
Trigger: AGTCGCGTGCTGTACTGGCCACGAGGCCGGGTCTGG...CTGACTTTGGGAACGATCACCCATTCCAGAACACACGTGAGTGTGATCTGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp CAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGGCCCAACTCCAGGCAGGTaGCACACCACAGGGATATCC +
Preference number: 4 (lower is better)
Translates to: QIMGTSHKTHSSCAFPEGPTPGR*HTTGIS
Trigger: GGATATCCCTGTGGTGTGCCACCTGCCTGGAGTTGG...GCCCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp CCCTGTGCCTCGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGTCTCAAGATGGGCTGTaGCTCCGTCCCCTGTGTAGC +
Preference number: 4 (lower is better)
Translates to: PCASLFRFKSGQERSAEGSQDGL*LRPLCS
Trigger: GCTACACAGGGGACGGAGCCACAGCCCATCTTGAGA...CCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCGAGGCACAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTCCGCCAGCCCACACTTGTaGCCCTCATGGTTCCCACGT +
Preference number: 4 (lower is better)
Translates to: LFRFKSGQERSAEGDEASASPHL*PSWFPR
Trigger: ACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGC...GGACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TCAGAAATATCTAGGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGGGATGGATCACAGGGTaGTCCCGGGGGTTGGCACTT +
Preference number: 4 (lower is better)
Translates to: SEISRAGLYWLDLLAWPEGWITG*SRGLAL
Trigger: AAGTGCCAACCCCCGGGACCACCCTGTGATCCATCC...CTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGTTCCTCTGTCGTCCCTCAAACAGCACTCTaGTTACAAGTGTCTGGACCT +
Preference number: 4 (lower is better)
Translates to: GQGCTGWISWLGLSSSVVPQTAL*LQVSGP
Trigger: AGGTCCAGACACTTGTAAGCAGAGTGCTGTTTGAGG...GACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp TGGTGCCTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCAGCACTGTCTGCTTTTaGCCGCACAAAGGCATCTAT +
Preference number: 4 (lower is better)
Translates to: WCLGHFWGHHERTSWAHVSTVCF*PHKGIY
Trigger: ATAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCT...GACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TCAGAAATATCTAGGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGGGTGAAGCGGGTGGTTaGTCTTGCCCCGAGACACAT +
Preference number: 4 (lower is better)
Translates to: SEISRAGLYWLDLLAWPEGEAGG*SCPETH
Trigger: ATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACC...CTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCCTTGGCGTCAATCACTTGCGATaGCAGGAAGTGGAACTGGAT +
Preference number: 4 (lower is better)
Translates to: LGHFWGHHERTSWAHVLGVNHLR*QEVELD
Trigger: ATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGAC...GCCAAGGACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGGCCTGCAATCATTACCGTaGGAGCGTTCAGGTTGCCGC +
Preference number: 4 (lower is better)
Translates to: QIMGTSHKTHSSCAFPEGLQSLP*ERSGCR
Trigger: GCGGCAACCTGAACGCTCCCACGGTAATGATTGCAG...GCCCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR TCA 90 bp CGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTATGTGGATCTTCCACTaGAGCCGCTTGCTCCCCATC +
Preference number: 4 (lower is better)
Translates to: RSSDLNQGRREVQRGMRRMWIFH*SRLLPI
Trigger: GATGGGGAGCAAGCGGCTTCAGTGGAAGATCCACAT...ACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp AACATGTGGCCTTCCATGATTGGGGTATTACAGGCTCTTTGCCAAGGAGCCTACTGGTCCTGCAGGTTCTaGCCAACTCCAGGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: NMWPSMIGVLQALCQGAYWSCRF*PTPGRW
Trigger: CCACCTGCCTGGAGTTGGGCAGAACCTGCAGGACCA...GTAGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGATGGTCCTGCAGGTTCTaGCCAACTCCAGGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: PDQRALVNAAGICSPDPRWSCRF*PTPGRW
Trigger: CCACCTGCCTGGAGTTGGGCAGAACCTGCAGGACCA...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GAATATACAACAGCCCAGCCAGCAGGGGCTTCGCAGGTCACCAGCTTGGGCCTAAGCACTGTCTGCTTTTaGCCGCACAAAGGCATCTAT +
Preference number: 4 (lower is better)
Translates to: EYTTAQPAGASQVTSLGLSTVCF*PHKGIY
Trigger: ATAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCT...TAGGCCCAAGCTGGTGACCTGCGAAGCCCCTGCTGGCTGGGCTGTTGTATATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp ACGCTGCCTGGCGTTTCAGGCTGTCCTTCCCGGTATGTCTGCTTTAAGCCTGGTGGAGCCAAGGCTTCCTaGGCAAAAATTTCTCGTGAC +
Preference number: 4 (lower is better)
Translates to: TLPGVSGCPSRYVCFKPGGAKAS*AKISRD
Trigger: GTCACGAGAAATTTTTGCCCAGGAAGCCTTGGCTCC...ACCAGGCTTAAAGCAGACATACCGGGAAGGACAGCCTGAAACGCCAGGCAGCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CAA 72 bp GCTGCTACCTGCCTCTTGGCTTCAGCAAAAGCTTCCTaGGAGAGCCCAGTCCAGTTCAACCACCCTGACTTT +
Preference number: 4 (lower is better)
Translates to: AATCLLASAKAS*ESPVQFNHPDF
Trigger: AAAGTCAGGGTGGTTGAACTGGACTGGGCTCTCCAAGGAAGCTTTTGCTGAAGCCAAGAGGCAGGTAGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp ACGCTGCCTGGCGTTTCAGGCTGTCCTTCCCGGTATGTCTGCTTTAAGCCTGGTCCTCAAACAGCACTCTaGTTACAAGTGTCTGGACCT +
Preference number: 4 (lower is better)
Translates to: TLPGVSGCPSRYVCFKPGPQTAL*LQVSGP
Trigger: AGGTCCAGACACTTGTAAGCAGAGTGCTGTTTGAGG...ACCAGGCTTAAAGCAGACATACCGGGAAGGACAGCCTGAAACGCCAGGCAGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp CCCTGTGCCTCGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGCCATGGTCAATCACTTaGGATGGCAGGAAGTGGAAC +
Preference number: 4 (lower is better)
Translates to: PCASLFRFKSGQERSAEGPWSIT*DGRKWN
Trigger: GTTCCACTTCCTGCCATCGCAAGTGATTGACCATGG...CCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCGAGGCACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGCCGAGACACATGCAGTaGGCCATCCCCACCGCGGTA +
Preference number: 4 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRPRHMQ*AIPTAV
Trigger: TACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGG...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAGAGCATGAGCAGCTGTaGAGAGTTGATGGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: PDQRALVNAAGICSPDPREHEQL*RVDGSP
Trigger: GGGGGAGCCATCAACTCTCCACAGCTGCTCATGCTC...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR TCA 90 bp TCGCAAACCTCTTCGGAAGACATTCTTACTCCAGATGCAGGCAAAAACACTTCAAACTGGATGTCCGGATaGGGGACCCCAGGTCGGCTG +
Preference number: 4 (lower is better)
Translates to: SQTSSEDILTPDAGKNTSNWMSG*GTPGRL
Trigger: CAGCCGACCTGGGGTCCCTCATCCGGACATCCAGTT...TGAAGTGTTTTTGCCTGCATCTGGAGTAAGAATGTCTTCCGAAGAGGTTTGCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp CAGCTCTGCCTTTACTTGGGGAGGATGGAGTGTTGGTTTACTTGTACAAACACCCACCTACTGCACGGGTaGCCTCAAACAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: QLCLYLGRMECWFTCTNTHLLHG*PQTALC
Trigger: GCAGAGTGCTGTTTGAGGGCACCCGTGCAGTAGGTG...GGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp ACCAAATCATGGGCACCTCTCACAAAACCCACTCCAGCTGTGCTTTCCCAGAGGCCGAAGCCCTCCTGTTaGAAGCCATTCATGTCTTCA +
Preference number: 4 (lower is better)
Translates to: TKSWAPLTKPTPAVLSQRPKPSC*KPFMSS
Trigger: TGAAGACATGAATGGCTTCCAACAGGAGGGCTTCGG...CCTCTGGGAAAGCACAGCTGGAGTGGGTTTTGTGAGAGGTGCCCATGATTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp AACATGTGGCCTTCCATGATTGGGGTATTACAGGCTCTTTGCCAAGGAGCCTACGTGGGTTTCCGCCCATaGTCAATCACTTGCGATGGC +
Preference number: 4 (lower is better)
Translates to: NMWPSMIGVLQALCQGAYVGFRP*SITCDG
Trigger: GCCATCGCAAGTGATTGACCATGGGCGGAAACCCAC...GTAGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR TCA 90 bp AGTTCAACCACCCTGACTTTGCAGGAATGGCCTCAGGTGGGAGACCAGGGAAAGGACATCGGTTTCTGTTaGCAAGTAGTTGGGATGGAT +
Preference number: 4 (lower is better)
Translates to: SSTTLTLQEWPQVGDQGKDIGFC*QVVGMD
Trigger: ATCCATCCCAACTACTTGTCAACAGAAACCGATGTC...CTTTCCCTGGTCTCCCACCTGAGGCCATTCCTGCAAAGTCAGGGTGGTTGAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp TGTTCTCCATCAGCCTTGGTGCCATGCTCTCTGTTCTCACGTCTAGAGAATAAGGTACTCCACACCTACTaGACGGGTGCCCTCAAACAG +
Preference number: 4 (lower is better)
Translates to: CSPSALVPCSLFSRLENKVLHTY*TGALKQ
Trigger: CTGTTTGAGGGCACCCGTGCAGTAGGTGTGGAGTAC...CTTATTCTCTAGACGTGAGAACAGAGAGCATGGCACCAAGGCTGATGGAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAGTCGGCTGCTTTCTCTaGAATCATTACCGTGGGAGC +
Preference number: 4 (lower is better)
Translates to: PDQRALVNAAGICSPDPRVGCFL*NHYRGS
Trigger: GCTCCCACGGTAATGATTGCAGAGAAAGCAGCCGAC...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp GCTATTTCCTCTCTCTTCTTCACTCAGCCATGTGATTTCTATACAGCGATCCCTACCTCCAGGTGGTCCTaGAGGTTCTGCCCAACTCCA +
Preference number: 4 (lower is better)
Translates to: AISSLFFTQPCDFYTAIPTSRWS*RFCPTP
Trigger: TGGAGTTGGGCAGAACCTGCAGGACCACCTGGAGGT...AGGGATCGCTGTATAGAAATCACATGGCTGAGTGAAGAAGAGAGAGGAAATAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGCTTAATAATGTCGGCTaGTTTCTCTGCAATCATTAC +
Preference number: 4 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILLNNVG*FLCNHY
Trigger: GTAATGATTGCAGAGAAAGCAGCCGACATTATTAAG...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp CTAACCTACAATGCGTCTGACCCCCATTCTCTCATAAGAACAGTTGGAATGAGGCTGCTTACAAGTGTCTaGACCTCGGCCCTGAGGTTG +
Preference number: 4 (lower is better)
Translates to: LTYNASDPHSLIRTVGMRLLTSV*TSALRL
Trigger: CAACCTCAGGGCCGAGGTCCAGACACTTGTAAGCAG...CCTCATTCCAACTGTTCTTATGAGAGAATGGGGGTCAGACGCATTGTAGGTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp GCTATTTCCTCTCTCTTCTTCACTCAGCCATGTGATTTCTATACAGCGATCCCTTCTCAAGATGGGCTGTaGCTCCGTCCCCTGTGTAGC +
Preference number: 4 (lower is better)
Translates to: AISSLFFTQPCDFYTAIPSQDGL*LRPLCS
Trigger: GCTACACAGGGGACGGAGCCACAGCCCATCTTGAGA...AGGGATCGCTGTATAGAAATCACATGGCTGAGTGAAGAAGAGAGAGGAAATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR GCA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCGGGCATGGCTGGCCCTaGACAGCCCATGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELGHGWP*TAHARA
Trigger: AGCCCTGGCATGGGCTGTGCAGGGCCAGCCATGCCC...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CAA 72 bp CTGCCTTTACTTGGGGAGGATGGAGTGTTGGTTTACTaGTACAAACACCACCAAATCATGGGCACCTCTCAC +
Preference number: 4 (lower is better)
Translates to: LPLLGEDGVLVY*YKHHQIMGTSH
Trigger: GTGAGAGGTGCCCATGATTTGGTGGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR TCA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAGACATCGGTTTCTGTTaGCAAGTAGTTGGGATGGAT +
Preference number: 4 (lower is better)
Translates to: PDQRALVNAAGICSPDPRDIGFC*QVVGMD
Trigger: ATCCATCCCAACTACTTGTCAACAGAAACCGATGTC...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CAA 72 bp CAGCGATCCCTTTCTTCCCGACTACAGATGATGGCTTaGGACATCTTCAGGAAAACTAACCTACAATGCGTC +
Preference number: 4 (lower is better)
Translates to: QRSLSSRLQMMA*DIFRKTNLQCV
Trigger: GACGCATTGTAGGTTAGTTTTCCTGAAGATGTCCAAAGCCATCATCTGTAGTCGGGAAGAAAGGGATCGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CCA 90 bp TCGCAAACCTCTTCGGAAGACATTCTTACTCCAGATGCAGGCAAAAACACTTCAGTCAATCACTTGCGATaGCAGGAAGTGGAACTGGAT +
Preference number: 4 (lower is better)
Translates to: SQTSSEDILTPDAGKNTSVNHLR*QEVELD
Trigger: ATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGAC...TGAAGTGTTTTTGCCTGCATCTGGAGTAAGAATGTCTTCCGAAGAGGTTTGCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CCA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCGGTGGTCCCGGGGGTTaGCACTTCTCAGTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELGGPGG*HFSVSA
Trigger: GGCTGAAACTGAGAAGTGCCAACCCCCGGGACCACC...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
3UTR CAA 72 bp TTATCAGCTCTGCCTTTACTTGGGGAGGATGGAGTGTaGGTTTACTTGTACAAACACCACCAAATCATGGGC +
Preference number: 4 (lower is better)
Translates to: LSALPLLGEDGV*VYLYKHHQIMG
Trigger: GCCCATGATTTGGTGGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CAA 72 bp ACAGTGGTCCAGCTCTTAAGCCAGATCGGCTCTATTTaGTGCTGTGTGCTTTTTACTATCTACGATCTTTAT +
Preference number: 4 (lower is better)
Translates to: TVVQLLSQIGSI*CCVLFTIYDLY
Trigger: ATAAAGATCGTAGATAGTAAAAAGCACACAGCACAAAATAGAGCCGATCTGGCTTAAGAGCTGGACCACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
3UTR CAA 72 bp TTTACTATCTACGATCTTTATCAGCTCTGCCTTTACTaGGGGAGGATGGAGTGTTGGTTTACTTGTACAAAC +
Preference number: 4 (lower is better)
Translates to: FTIYDLYQLCLY*GRMECWFTCTN
Trigger: GTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTGATAAAGATCGTAGATAGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR GCA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCCTTAATAATGTCGGCTaGTTTCTCTGCAATCATTAC +
Preference number: 4 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELLNNVG*FLCNHY
Trigger: GTAATGATTGCAGAGAAAGCAGCCGACATTATTAAG...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp CAGCCTGACGTGCTGCCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTaGTCTTGCCCCGAGACACATGCAGTGGGCCATCCCCACCGCGGT +
Preference number: 5 (lower is better)
Translates to: QPDVLPAGRPGEAGG*SCPETHAVGHPHRG
Trigger: ACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 90 bp ATAGTCCTCGGCGTGTCCTCGGATGTAGACCATGGCATTGAGGGATaGGGAGCCACCCCAGACCCGGCCTCGTGGCCAGTACAGCACGCG +
Preference number: 5 (lower is better)
Translates to: IVLGVSSDVDHGIEG*GATPDPASWPVQHA
Trigger: CGCGTGCTGTACTGGCCACGAGGCCGGGTCTGGGGTGGCTCCTCATCCCTCAATGCCATGGTCTACATCCGAGGACACGCCGAGGACTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 90 bp AGTGGAACTGGATGTCCGGATGAGGGACCCCAGGTCGGCTGCGGATaGACCCTCCGGTCTCAAGATGGGCTGTGGCTCCGTCCCCTGTGT +
Preference number: 5 (lower is better)
Translates to: SGTGCPDEGPQVGCG*TLRSQDGLWLRPLC
Trigger: ACACAGGGGACGGAGCCACAGCCCATCTTGAGACCGGAGGGTTCATCCGCAGCCGACCTGGGGTCCCTCATCCGGACATCCAGTTCCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp GACGTGCTGCCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTGGTCTTaGCCCGAGACACATGCAGTGGGCCATCCCCACCGCGGTACATAT +
Preference number: 5 (lower is better)
Translates to: DVLPAGRPGEAGGWS*PETHAVGHPHRGTY
Trigger: ATATGTACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp TGCCCCGAGACACATGCAGTGGGCCATCCCCACCGCGGTACATATTaGCACCCAGCTCATGTCTCTGCGCCTTGCGGAAGTAGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: CPETHAVGHPHRGTY*HPAHVSAPCGSRAG
Trigger: GCCTGCCCTACTTCCGCAAGGCGCAGAGACATGAGCTGGGTGCCAATATGTACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp CCTACTGCACGGGTGCCCTCAAACAGCACTCTGCTTACAAGTGTCTaGACCTCGGCCCTGAGGTTGGGGCGGCTCAGCACCGGGTGCAAG +
Preference number: 5 (lower is better)
Translates to: PTARVPSNSTLLTSV*TSALRLGRLSTGCK
Trigger: CTTGCACCCGGTGCTGAGCCGCCCCAACCTCAGGGCCGAGGTCCAGACACTTGTAAGCAGAGTGCTGTTTGAGGGCACCCGTGCAGTAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CAGAGGGGGATGAGGCGTCCTCTAGCTGCTGCCTGTCCCTCTAATTGGGGACATGTGGGAGCGTTCAGGTaGCCGCTGACCACGCTGGGC +
Preference number: 5 (lower is better)
Translates to: QRGMRRPLAAACPSNWGHVGAFR*PLTTLG
Trigger: GCCCAGCGTGGTCAGCGGCAACCTGAACGCTCCCAC...ATGTCCCCAATTAGAGGGACAGGCAGCAGCTAGAGGACGCCTCATCCCCCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp GGCCTGGTGAAGCGGGTGGTTGGTCTTGCCCCGAGACACATGCAGTaGGCCATCCCCACCGCGGTACATATTGGCACCCAGCTCATGTCT +
Preference number: 5 (lower is better)
Translates to: GLVKRVVGLAPRHMQ*AIPTAVHIGTQLMS
Trigger: AGACATGAGCTGGGTGCCAATATGTACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACCAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp GGTCCCGGGGGTTGGCACTTCTCAGTTTCAGCCAGCCCACACTTGTaGCCCTCATGGTTCCCACGTGCACCTGGTAAGCTTCCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: GPGGWHFSVSASPHL*PSWFPRAPGKLPAG
Trigger: CCCAGCAGGAAGCTTACCAGGTGCACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACCCCCGGGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 90 bp AGCGGTTATAGTCCTCGGCGTGTCCTCGGATGTAGACCATGGCATTaGGGGATGAGGAGCCACCCCAGACCCGGCCTCGTGGCCAGTACA +
Preference number: 5 (lower is better)
Translates to: SGYSPRRVLGCRPWH*GMRSHPRPGLVAST
Trigger: TGTACTGGCCACGAGGCCGGGTCTGGGGTGGCTCCTCATCCCTCAATGCCATGGTCTACATCCGAGGACACGCCGAGGACTATAACCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp CCCCACCGCGGTACATATTGGCACCCAGCTCATGTCTCTGCGCCTTaGGGAAGTAGGGCAGGCAGTGTGCATAGTCCCAACCCTCAGCAC +
Preference number: 5 (lower is better)
Translates to: PHRGTYWHPAHVSAP*GSRAGSVHSPNPQH
Trigger: GTGCTGAGGGTTGGGACTATGCACACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACATGAGCTGGGTGCCAATATGTACCGCGGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp GAAGCCATTCATGTCTTCAGTGAAGGGGTAGCCAGCCTGACGTGCTaGCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTGGTCTTGCCCCG +
Preference number: 5 (lower is better)
Translates to: EAIHVFSEGVASLTC*LQEGLVKRVVGLAP
Trigger: CGGGGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGCTACCCCTTCACTGAAGACATGAATGGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp AGAAGTCCAGAAGGCAGCTCCTGCCAGTCAACCCTAGGGGACCCTGGAATCCTGAGCAGCTGTGGAGAGTaGATGGCTCCCCCGCTCAGG +
Preference number: 5 (lower is better)
Translates to: RSPEGSSCQSTLGDPGILSSCGE*MAPPLR
Trigger: CCTGAGCGGGGGAGCCATCAACTCTCCACAGCTGCT...CAGGATTCCAGGGTCCCCTAGGGTTGACTGGCAGGAGCTGCCTTCTGGACTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 90 bp CCATCCAGCCGAAGCCCTCCTGTTGGAAGCCATTCATGTCTTCAGTaGAGGGGTAGCCAGCCTGACGTGCTGCCTGCAGGAAGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: PSSRSPPVGSHSCLQ*RGSQPDVLPAGRPG
Trigger: ACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGCTACCCCTTCACTGAAGACATGAATGGCTTCCAACAGGAGGGCTTCGGCTGGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp CCTGAGGTCATCTGCATTGCCAACGCCAGAGAGCATGAGCAGCTGTaGAGAGTTGATGGCTCCCCCGCTCAGGATCACCTCCCTGCTGAC +
Preference number: 5 (lower is better)
Translates to: PEVICIANAREHEQL*RVDGSPAQDHLPAD
Trigger: GTCAGCAGGGAGGTGATCCTGAGCGGGGGAGCCATCAACTCTCCACAGCTGCTCATGCTCTCTGGCGTTGGCAATGCAGATGACCTCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp AGCTTCCTGCTGGGTGGGTTTCCGCCCATGGTCAATCACTTGCGATaGCAGGAAGTGGAACTGGATGTCCGGATGAGGGACCCCAGGTCG +
Preference number: 5 (lower is better)
Translates to: SFLLGGFPPMVNHLR*QEVELDVRMRDPRS
Trigger: CGACCTGGGGTCCCTCATCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGACCATGGGCGGAAACCCACCCAGCAGGAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp GGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGTTCCTCTGTCGTCGCTCCAGCGCTTCCCTaGGTGGACAGTCATGTCCAT +
Preference number: 5 (lower is better)
Translates to: GQGCTGWISWLGLSSSVVAPALP*VDSHVH
Trigger: ATGGACATGACTGTCCACCAAGGGAAGCGCTGGAGC...GACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CTGAGAGGAGAACATGGCCCTCCCAGGGGTGACACCTGTGCTGCTAAAGATGCTAGCAGCTGTGGAGAGTaGATGGCTCCCCCGCTCAGG +
Preference number: 5 (lower is better)
Translates to: LRGEHGPPRGDTCAAKDASSCGE*MAPPLR
Trigger: CCTGAGCGGGGGAGCCATCAACTCTCCACAGCTGCT...AGCATCTTTAGCAGCACAGGTGTCACCCCTGGGAGGGCCATGTTCTCCTCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS TCA 90 bp TGGTCAATCACTTGCGATGGCAGGAAGTGGAACTGGATGTCCGGATaGGGGACCCCAGGTCGGCTGCGGATGAACCCTCCGGTCTCAAGA +
Preference number: 5 (lower is better)
Translates to: WSITCDGRKWNWMSG*GTPGRLRMNPPVSR
Trigger: TCTTGAGACCGGAGGGTTCATCCGCAGCCGACCTGGGGTCCCTCATCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp CACCCCAGACCCGGCCTCGTGGCCAGTACAGCACGCGACTGTCCATaGCGGGCTGAGGCTCAGTGTGATAGTACCAGTTGTATTTGTCAT +
Preference number: 5 (lower is better)
Translates to: HPRPGLVASTARDCP*RAEAQCDSTSCICH
Trigger: ATGACAAATACAACTGGTACTATCACACTGAGCCTCAGCCCGGCATGGACAGTCGCGTGCTGTACTGGCCACGAGGCCGGGTCTGGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp ACCCAGCTCATGTCTCTGCGCCTTGCGGAAGTAGGGCAGGCAGTGTaGATAGTCCCAACCCTCAGCACCTTCACGGTGCCAGCGGTTATA +
Preference number: 5 (lower is better)
Translates to: TQLMSLRLAEVGQAV*IVPTLSTFTVPAVI
Trigger: TATAACCGCTGGCACCGTGAAGGTGCTGAGGGTTGGGACTATGCACACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACATGAGCTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp TTGGAAGCCATTCATGTCTTCAGTGAAGGGGTAGCCAGCCTGACGTaGTGCCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTGGTCTTGCC +
Preference number: 5 (lower is better)
Translates to: LEAIHVFSEGVASLT*CLQEGLVKRVVGLA
Trigger: GGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGCTACCCCTTCACTGAAGACATGAATGGCTTCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp GAGGCATCAACGACCCTGAGGTTTTCTACGCCGATGACCTTGGTTTaGGCGTCAACCACGGCAGTGGGGTCAGAGGACCGGCCCATCTTA +
Preference number: 5 (lower is better)
Translates to: EASTTLRFSTPMTLV*ASTTAVGSEDRPIL
Trigger: TAAGATGGGCCGGTCCTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGGCGTAGAAAACCTCAGGGTCGTTGATGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp TGGCCCTCATGGTTCCCACGTGCACCTGGTAAGCTTCCTGCTGGGTaGGTTTCCGCCCATGGTCAATCACTTGCGATGGCAGGAAGTGGA +
Preference number: 5 (lower is better)
Translates to: WPSWFPRAPGKLPAG*VSAHGQSLAMAGSG
Trigger: TCCACTTCCTGCCATCGCAAGTGATTGACCATGGGCGGAAACCCACCCAGCAGGAAGCTTACCAGGTGCACGTGGGAACCATGAGGGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp AGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCTCGGCCGAAGCCCTCCTGTaGGAAGCCATTCATGTCTTC +
Preference number: 5 (lower is better)
Translates to: RVVGVELCSHLSPRPCASAEALL*EAIHVF
Trigger: GAAGACATGAATGGCTTCCAACAGGAGGGCTTCGGC...CGAGGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp CTGTTGACAAGTAGTTGGGATGGATCACAGGGTGGTCCCGGGGGTTaGCACTTCTCAGTTTCAGCCAGCCCACACTTGTGGCCCTCATGG +
Preference number: 5 (lower is better)
Translates to: LLTSSWDGSQGGPGG*HFSVSASPHLWPSW
Trigger: CCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACCCCCGGGACCACCCTGTGATCCATCCCAACTACTTGTCAACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp TCAGAAATATCTAGGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGGGGTGGTCCCGGGGGTaGGCACTTCTCAGTTTCAGC +
Preference number: 5 (lower is better)
Translates to: SEISRAGLYWLDLLAWPEGWSRG*ALLSFS
Trigger: GCTGAAACTGAGAAGTGCCAACCCCCGGGACCACCC...CTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCCTAGATATTTCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp AACATGTGGCCTTCCATGATTGGGGTATTACAGGCTCTTTGCCAAGGAGCCTACGTGGGAGCGTTCAGGTaGCCGCTGACCACGCTGGGC +
Preference number: 5 (lower is better)
Translates to: NMWPSMIGVLQALCQGAYVGAFR*PLTTLG
Trigger: GCCCAGCGTGGTCAGCGGCAACCTGAACGCTCCCAC...GTAGGCTCCTTGGCAAAGAGCCTGTAATACCCCAATCATGGAAGGCCACATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS TCA 90 bp TCACACAGGTTGGACACAAGGGCAGCCGGCATGTGGATCTTCCACTaGAGCCGCTTGCTCCCCATCAACAAGTCCTTAGGTCCTGCCTCT +
Preference number: 5 (lower is better)
Translates to: SHRLDTRAAGMWIFH*SRLLPINKSLGPAS
Trigger: AGAGGCAGGACCTAAGGACTTGTTGATGGGGAGCAAGCGGCTTCAGTGGAAGATCCACATGCCGGCTGCCCTTGTGTCCAACCTGTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CGCTCTTCAGATTTAAATCAGGGCAGGAGAGAAGTGCAGAGGGGGATGAGGCGTAGCGGGTGGTTGGTCTaGCCCCGAGACACATGCAGT +
Preference number: 5 (lower is better)
Translates to: RSSDLNQGRREVQRGMRRSGWLV*PRDTCS
Trigger: ACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCT...ACGCCTCATCCCCCTCTGCACTTCTCTCCTGCCCTGATTTAAATCTGAAGAGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp GCCAGAGTGGTAGGCGTTGAGTTGTGCAGTCACCTGAGCCCTCGTCCCTGTGCCCGACATCGGTTTCTGTaGACAAGTAGTTGGGATGGA +
Preference number: 5 (lower is better)
Translates to: ARVVGVELCSHLSPRPCARHRFL*TSSWDG
Trigger: TCCATCCCAACTACTTGTCAACAGAAACCGATGTCG...GGCACAGGGACGAGGGCTCAGGTGACTGCACAACTCAACGCCTACCACTCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp GGGCAGGGCTGTACTGGCTGGATCTCTTGGCTTGGCCTGAGTTCCTCTGTCGTCAAGCACTGTCTGCTTTaGCCCGCACAAAGGCATCTA +
Preference number: 5 (lower is better)
Translates to: GQGCTGWISWLGLSSSVVKHCLL*PAQRHL
Trigger: TAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCTT...GACGACAGAGGAACTCAGGCCAAGCCAAGAGATCCAGCCAGTACAGCCCTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp TTCCAGACAACCCCAGCATGTGGATTCAGCACTGCAGGCAAGACTCTCCTGCGTGCCGAAGCCCTCCTGTaGGAAGCCATTCATGTCTTC +
Preference number: 5 (lower is better)
Translates to: FQTTPACGFSTAGKTLLRAEALL*EAIHVF
Trigger: GAAGACATGAATGGCTTCCAACAGGAGGGCTTCGGC...ACGCAGGAGAGTCTTGCCTGCAGTGCTGAATCCACATGCTGGGGTTGTCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CAA 90 bp TGGAGACAAGAAAACCATGTTAGCTACCCCACCTGCTACCCGCAGGCAGCCAGGCCCATGGTCAATCACTaGCGATGGCAGGAAGTGGAA +
Preference number: 5 (lower is better)
Translates to: WRQENHVSYPTCYPQAARPMVNH*RWQEVE
Trigger: TTCCACTTCCTGCCATCGCAAGTGATTGACCATGGG...CCTGGCTGCCTGCGGGTAGCAGGTGGGGTAGCTAACATGGTTTTCTTGTCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCCTTGGCCGACATCGGTTTCTGTaGACAAGTAGTTGGGATGGA +
Preference number: 5 (lower is better)
Translates to: LGHFWGHHERTSWAHVLGRHRFL*TSSWDG
Trigger: TCCATCCCAACTACTTGTCAACAGAAACCGATGTCG...GCCAAGGACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp TGGTGCCTGGGCCATTTCTGGGGCCACCATGAAAGGACCTCGTGGGCTCATGTCAAGGCATCTATCTCTTaGTCTGACTGGACGTGGCTT +
Preference number: 5 (lower is better)
Translates to: WCLGHFWGHHERTSWAHVKASIS*SDWTWL
Trigger: AAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTT...GACATGAGCCCACGAGGTCCTTTCATGGTGGCCCCAGAAATGGCCCAGGCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp GTAAGCCTTGTGTCTCTGGCCGTCCTTGATGTACTCCACACCTACTaGACGGGTGCCCTCAAACAGCACTCTGCTTACAAGTGTCTGGAC +
Preference number: 5 (lower is better)
Translates to: VSLVSLAVLDVLHTY*TGALKQHSAYKCLD
Trigger: GTCCAGACACTTGTAAGCAGAGTGCTGTTTGAGGGCACCCGTGCAGTAGGTGTGGAGTACATCAAGGACGGCCAGAGACACAAGGCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp GTCCTCAAGTGCAGGGTGTCCCTTAATAATGTCGGCTGCTTTCTCTaGAATCATTACCGTGGGAGCGTTCAGGTTGCCGCTGACCACGCT +
Preference number: 5 (lower is better)
Translates to: VLKCRVSLNNVGCFL*NHYRGSVQVAADHA
Trigger: AGCGTGGTCAGCGGCAACCTGAACGCTCCCACGGTAATGATTGCAGAGAAAGCAGCCGACATTATTAAGGGACACCCTGCACTTGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CAGCTCTGCCTTTACTTGGGGAGGATGGAGTGTTGGTTTACTTGTACAAACACCGGGTGGTCCCGGGGGTaGGCACTTCTCAGTTTCAGC +
Preference number: 5 (lower is better)
Translates to: QLCLYLGRMECWFTCTNTGWSRG*ALLSFS
Trigger: GCTGAAACTGAGAAGTGCCAACCCCCGGGACCACCC...GGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS-3UTR CAA 90 bp GGGGCATCAGAGAGACACTGGGAAAAGGGACTTGCCTCACTGCCTACCATGACCAAGCACTGTCTGCTTTaGCCCGCACAAAGGCATCTA +
Preference number: 5 (lower is better)
Translates to: GASERHWEKGLASLPTMTKHCLL*PAQRHL
Trigger: TAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCTT...GGTCATGGTAGGCAGTGAGGCAAGTCCCTTTTCCCAGTGTCTCTCTGATGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp ACAAAGGCATCTATCTCTTTGTCTGACTGGACGTGGCTTCCGGGCTaGAGCTCTTTTCCCCGAAATGGAGCCAAGGCTTCCTGGGCAAAA +
Preference number: 5 (lower is better)
Translates to: TKASISLSDWTWLPG*SSFPRNGAKASWAK
Trigger: TTTTGCCCAGGAAGCCTTGGCTCCATTTCGGGGAAAAGAGCTGCAGCCCGGAAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 90 bp GAGGCTCAGTGTGATAGTACCAGTTGTATTTGTCATCACACAGGTTaGACACAAGGGCAGCCGGCATGTGGATCTTCCACTGAAGCCGCT +
Preference number: 5 (lower is better)
Translates to: EAQCDSTSCICHHTG*TQGQPACGSSTEAA
Trigger: AGCGGCTTCAGTGGAAGATCCACATGCCGGCTGCCCTTGTGTCCAACCTGTGTGATGACAAATACAACTGGTACTATCACACTGAGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCACCTCGGCCCTGAGGTaGGGGCGGCTCAGCACCGGG +
Preference number: 5 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELTSALR*GRLSTG
Trigger: CCCGGTGCTGAGCCGCCCCAACCTCAGGGCCGAGGT...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp GCTATTTCCTCTCTCTTCTTCACTCAGCCATGTGATTTCTATACAGCGATCCCTTCAGCCAGCCCACACTaGTGGCCCTCATGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: AISSLFFTQPCDFYTAIPSASPH*WPSWFP
Trigger: TGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGA...AGGGATCGCTGTATAGAAATCACATGGCTGAGTGAAGAAGAGAGAGGAAATAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 90 bp AACATTCTTGTCCTCAAGTGCAGGGTGTCCCTTAATAATGTCGGCTaGTTTCTCTGCAATCATTACCGTGGGAGCGTTCAGGTTGCCGCT +
Preference number: 5 (lower is better)
Translates to: NILVLKCRVSLNNVG*FLCNHYRGSVQVAA
Trigger: AGCGGCAACCTGAACGCTCCCACGGTAATGATTGCAGAGAAAGCAGCCGACATTATTAAGGGACACCCTGCACTTGAGGACAAGAATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CAGCTCTGCCTTTACTTGGGGAGGATGGAGTGTTGGTTTACTTGTACAAACACCCCCATGGTCAATCACTaGCGATGGCAGGAAGTGGAA +
Preference number: 5 (lower is better)
Translates to: QLCLYLGRMECWFTCTNTPMVNH*RWQEVE
Trigger: TTCCACTTCCTGCCATCGCAAGTGATTGACCATGGG...GGTGTTTGTACAAGTAAACCAACACTCCATCCTCCCCAAGTAAAGGCAGAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067620.12
CDS GCA 90 bp GTCCAGAGTCTGGGGCTTGTAGACAGGAACATTCTTGTCCTCAAGTaGAGGGTGTCCCTTAATAATGTCGGCTGCTTTCTCTGCAATCAT +
Preference number: 5 (lower is better)
Translates to: VQSLGLVDRNILVLK*RVSLNNVGCFLCNH
Trigger: ATGATTGCAGAGAAAGCAGCCGACATTATTAAGGGACACCCTGCACTTGAGGACAAGAATGTTCCTGTCTACAAGCCCCAGACTCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp CCAGATCAAAGAGCTCTTGTAAATGCTGCTGGTATCTGCTCCCCTGACCCAAGAAAGGCATCTATCTCTTaGTCTGACTGGACGTGGCTT +
Preference number: 5 (lower is better)
Translates to: PDQRALVNAAGICSPDPRKASIS*SDWTWL
Trigger: AAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTT...TCTTGGGTCAGGGGAGCAGATACCAGCAGCATTTACAAGAGCTCTTTGATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCAGCGGGTGGTTGGTCTaGCCCCGAGACACATGCAGT +
Preference number: 5 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELSGWLV*PRDTCS
Trigger: ACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCT...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS-3UTR CAA 90 bp ATTAAGTTACCGGTTACATCCAAATTTATGAGGAATTTCCAGATCAAAGAGCTCTCAGCCAGCCCACACTaGTGGCCCTCATGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: IKLPVTSKFMRNFQIKELSASPH*WPSWFP
Trigger: TGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGA...GAGCTCTTTGATCTGGAAATTCCTCATAAATTTGGATGTAACCGGTAACTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp CCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTGGTCTTaGCCCGAGACACATGCAGTGGGCCATCCCCACCGC +
Preference number: 6 (lower is better)
Translates to: PAGRPGEAGGWS*PETHAVGHPHR
Trigger: GCGGTGGGGATGGCCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp GGATGTCCGGATGAGGGACCCCAGGTCGGCTGCGGATaGACCCTCCGGTCTCAAGATGGGCTGTGGCTCCGT +
Preference number: 6 (lower is better)
Translates to: GCPDEGPQVGCG*TLRSQDGLWLR
Trigger: ACGGAGCCACAGCCCATCTTGAGACCGGAGGGTTCATCCGCAGCCGACCTGGGGTCCCTCATCCGGACATCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp CCCTGCACAGCCCATGCCAGGGCTCCACGTGGGCTCTaGCATCCTTTCCTCCAGCCTCTAAGGACCTGCCAC +
Preference number: 6 (lower is better)
Translates to: PCTAHARAPRGL*HPFLQPLRTCH
Trigger: GTGGCAGGTCCTTAGAGGCTGGAGGAAAGGATGGCAGAGCCCACGTGGAGCCCTGGCATGGGCTGTGCAGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp GTGCTGCCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTaGTCTTGCCCCGAGACACATGCAGTGGGCCATCCC +
Preference number: 6 (lower is better)
Translates to: VLPAGRPGEAGG*SCPETHAVGHP
Trigger: GGGATGGCCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp GGCGTGTCCTCGGATGTAGACCATGGCATTGAGGGATaGGGAGCCACCCCAGACCCGGCCTCGTGGCCAGTA +
Preference number: 6 (lower is better)
Translates to: GVSSDVDHGIEG*GATPDPASWPV
Trigger: TACTGGCCACGAGGCCGGGTCTGGGGTGGCTCCTCATCCCTCAATGCCATGGTCTACATCCGAGGACACGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp AGTCCTCGGCGTGTCCTCGGATGTAGACCATGGCATTaGGGGATGAGGAGCCACCCCAGACCCGGCCTCGTG +
Preference number: 6 (lower is better)
Translates to: SPRRVLGCRPWH*GMRSHPRPGLV
Trigger: CACGAGGCCGGGTCTGGGGTGGCTCCTCATCCCTCAATGCCATGGTCTACATCCGAGGACACGCCGAGGACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp CGTCCCCTGTGTAGCTCCAGAGCCACTCCAGGCCGATaGAGACCTTCCGCAGAGGCTTCTGGGCAGAGTGGA +
Preference number: 6 (lower is better)
Translates to: RPLCSSRATPGR*RPSAEASGQSG
Trigger: TCCACTCTGCCCAGAAGCCTCTGCGGAAGGTCTGCATCGGCCTGGAGTGGCTCTGGAGCTACACAGGGGACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp CGGGTGCCCTCAAACAGCACTCTGCTTACAAGTGTCTaGACCTCGGCCCTGAGGTTGGGGCGGCTCAGCACC +
Preference number: 6 (lower is better)
Translates to: RVPSNSTLLTSV*TSALRLGRLST
Trigger: GGTGCTGAGCCGCCCCAACCTCAGGGCCGAGGTCCAGACACTTGTAAGCAGAGTGCTGTTTGAGGGCACCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp CAGCACCGGGTGCAAGTAGGCGCAGGCTGTGCTCCAGCGCTTCCCTaGGTGGACAGTCATGTCCATCCAGCCGAAGCCCTCCTGTTGGAA +
Preference number: 6 (lower is better)
Translates to: QHRVQVGAGCAPALP*VDSHVHPAEALLLE
Trigger: TTCCAACAGGAGGGCTTCGGCTGGATGGACATGACTGTCCACCAAGGGAAGCGCTGGAGCACAGCCTGCGCCTACTTGCACCCGGTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp ACTTGCGATGGCAGGAAGTGGAACTGGATGTCCGGATaGGGGACCCCAGGTCGGCTGCGGATGAACCCTCCG +
Preference number: 6 (lower is better)
Translates to: TCDGRKWNWMSG*GTPGRLRMNPP
Trigger: CGGAGGGTTCATCCGCAGCCGACCTGGGGTCCCTCATCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp CCCGGCCTCGTGGCCAGTACAGCACGCGACTGTCCATaGCGGGCTGAGGCTCAGTGTGATAGTACCAGTTGT +
Preference number: 6 (lower is better)
Translates to: PGLVASTARDCP*RAEAQCDSTSC
Trigger: ACAACTGGTACTATCACACTGAGCCTCAGCCCGGCATGGACAGTCGCGTGCTGTACTGGCCACGAGGCCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp AAGCGGGTGGTTGGTCTTGCCCCGAGACACATGCAGTaGGCCATCCCCACCGCGGTACATATTGGCACCCAG +
Preference number: 6 (lower is better)
Translates to: KRVVGLAPRHMQ*AIPTAVHIGTQ
Trigger: CTGGGTGCCAATATGTACCGCGGTGGGGATGGCCCACTGCATGTGTCTCGGGGCAAGACCAACCACCCGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp GGTGGTCCCGGGGGTTGGCACTTCTCAGTTTCAGCCAGCCCACACTaGTGGCCCTCATGGTTCCCACGTGCACCTGGTAAGCTTCCTGCT +
Preference number: 6 (lower is better)
Translates to: GGPGGWHFSVSASPH*WPSWFPRAPGKLPA
Trigger: AGCAGGAAGCTTACCAGGTGCACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACCCCCGGGACCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp CATGTCTTCAGTGAAGGGGTAGCCAGCCTGACGTGCTaGCTGCAGGAAGGCCTGGTGAAGCGGGTGGTTGGT +
Preference number: 6 (lower is better)
Translates to: HVFSEGVASLTC*LQEGLVKRVVG
Trigger: ACCAACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGCTACCCCTTCACTGAAGACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp ACGACCCTGAGGTTTTCTACGCCGATGACCTTGGTTTaGGCGTCAACCACGGCAGTGGGGTCAGAGGACCGG +
Preference number: 6 (lower is better)
Translates to: TTLRFSTPMTLV*ASTTAVGSEDR
Trigger: CCGGTCCTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGGCGTAGAAAACCTCAGGGTCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp GACACATGCAGTGGGCCATCCCCACCGCGGTACATATaGGCACCCAGCTCATGTCTCTGCGCCTTGCGGAAG +
Preference number: 6 (lower is better)
Translates to: DTCSGPSPPRYI*APSSCLCALRK
Trigger: CTTCCGCAAGGCGCAGAGACATGAGCTGGGTGCCAATATGTACCGCGGTGGGGATGGCCCACTGCATGTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp GGAGGCATCAACGACCCTGAGGTTTTCTACGCCGATGACCTTGGTTaGCGCGTCAACCACGGCAGTGGGGTCAGAGGACCGGCCCATCTT +
Preference number: 6 (lower is better)
Translates to: GGINDPEVFYADDLG*RVNHGSGVRGPAHL
Trigger: AAGATGGGCCGGTCCTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGGCGTAGAAAACCTCAGGGTCGTTGATGCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp ATGATGGAGGCATCAACGACCCTGAGGTTTTCTACGCCGATGACCTaGGTTTGCGCGTCAACCACGGCAGTGGGGTCAGAGGACCGGCCC +
Preference number: 6 (lower is better)
Translates to: MMEASTTLRFSTPMT*VCASTTAVGSEDRP
Trigger: GGGCCGGTCCTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGGCGTAGAAAACCTCAGGGTCGTTGATGCCTCCATCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp ATGTCTCTGCGCCTTGCGGAAGTAGGGCAGGCAGTGTaGATAGTCCCAACCCTCAGCACCTTCACGGTGCCA +
Preference number: 6 (lower is better)
Translates to: MSLRLAEVGQAV*IVPTLSTFTVP
Trigger: TGGCACCGTGAAGGTGCTGAGGGTTGGGACTATGCACACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp ACACATGCAGTGGGCCATCCCCACCGCGGTACATATTaGCACCCAGCTCATGTCTCTGCGCCTTGCGGAAGT +
Preference number: 6 (lower is better)
Translates to: THAVGHPHRGTY*HPAHVSAPCGS
Trigger: ACTTCCGCAAGGCGCAGAGACATGAGCTGGGTGCCAATATGTACCGCGGTGGGGATGGCCCACTGCATGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp GGGGGTTGGCACTTCTCAGTTTCAGCCAGCCCACACTaGTGGCCCTCATGGTTCCCACGTGCACCTGGTAAG +
Preference number: 6 (lower is better)
Translates to: GGWHFSVSASPH*WPSWFPRAPGK
Trigger: CTTACCAGGTGCACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp AACGACCCTGAGGTTTTCTACGCCGATGACCTTGGTTaGCGCGTCAACCACGGCAGTGGGGTCAGAGGACCG +
Preference number: 6 (lower is better)
Translates to: NDPEVFYADDLG*RVNHGSGVRGP
Trigger: CGGTCCTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGGCGTAGAAAACCTCAGGGTCGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp CTGGTAAGCTTCCTGCTGGGTGGGTTTCCGCCCATGGTCAATCACTaGCGATGGCAGGAAGTGGAACTGGATGTCCGGATGAGGGACCCC +
Preference number: 6 (lower is better)
Translates to: LVSFLLGGFPPMVNH*RWQEVELDVRMRDP
Trigger: GGGGTCCCTCATCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGACCATGGGCGGAAACCCACCCAGCAGGAAGCTTACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp ATGTCGGCTGCTTTCTCTGCAATCATTACCGTGGGAGCGTTCAGGTaGCCGCTGACCACGCTGGGCATGATGGAGGCATCAACGACCCTG +
Preference number: 6 (lower is better)
Translates to: MSAAFSAIITVGAFR*PLTTLGMMEASTTL
Trigger: CAGGGTCGTTGATGCCTCCATCATGCCCAGCGTGGTCAGCGGCAACCTGAACGCTCCCACGGTAATGATTGCAGAGAAAGCAGCCGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp ATTCATGTCTTCAGTGAAGGGGTAGCCAGCCTGACGTaGTGCCTGCAGGAAGGCCTGGTGAAGCGGGTGGTT +
Preference number: 6 (lower is better)
Translates to: IHVFSEGVASLT*CLQEGLVKRVV
Trigger: AACCACCCGCTTCACCAGGCCTTCCTGCAGGCAGCACGTCAGGCTGGCTACCCCTTCACTGAAGACATGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp ATCTGCATTGCCAACGCCAGAGAGCATGAGCAGCTGTaGAGAGTTGATGGCTCCCCCGCTCAGGATCACCTC +
Preference number: 6 (lower is better)
Translates to: ICIANAREHEQL*RVDGSPAQDHL
Trigger: GAGGTGATCCTGAGCGGGGGAGCCATCAACTCTCCACAGCTGCTCATGCTCTCTGGCGTTGGCAATGCAGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp CTGGGTGGGTTTCCGCCCATGGTCAATCACTTGCGATaGCAGGAAGTGGAACTGGATGTCCGGATGAGGGAC +
Preference number: 6 (lower is better)
Translates to: LGGFPPMVNHLR*QEVELDVRMRD
Trigger: GTCCCTCATCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGACCATGGGCGGAAACCCACCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp TTCTCAGTTTCAGCCAGCCCACACTTGTGGCCCTCATaGTTCCCACGTGCACCTGGTAAGCTTCCTGCTGGG +
Preference number: 6 (lower is better)
Translates to: FSVSASPHLWPS*FPRAPGKLPAG
Trigger: CCCAGCAGGAAGCTTACCAGGTGCACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp AGTAGTTGGGATGGATCACAGGGTGGTCCCGGGGGTTaGCACTTCTCAGTTTCAGCCAGCCCACACTTGTGG +
Preference number: 6 (lower is better)
Translates to: SSWDGSQGGPGG*HFSVSASPHLW
Trigger: CCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACCCCCGGGACCACCCTGTGATCCATCCCAACTACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp GCATCAACGACCCTGAGGTTTTCTACGCCGATGACCTaGGTTTGCGCGTCAACCACGGCAGTGGGGTCAGAG +
Preference number: 6 (lower is better)
Translates to: ASTTLRFSTPMT*VCASTTAVGSE
Trigger: CTCTGACCCCACTGCCGTGGTTGACGCGCAAACCAAGGTCATCGGCGTAGAAAACCTCAGGGTCGTTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp CTTCCCTTGGTGGACAGTCATGTCCATCCAGCCGAAGCCCTCCTGTaGGAAGCCATTCATGTCTTCAGTGAAGGGGTAGCCAGCCTGACG +
Preference number: 6 (lower is better)
Translates to: LPLVDSHVHPAEALL*EAIHVFSEGVASLT
Trigger: CGTCAGGCTGGCTACCCCTTCACTGAAGACATGAATGGCTTCCAACAGGAGGGCTTCGGCTGGATGGACATGACTGTCCACCAAGGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp GTGACAGCCTCACACACTGACGGAAGTCCTCGACATCGGTTTCTGTaGACAAGTAGTTGGGATGGATCACAGGGTGGTCCCGGGGGTTGG +
Preference number: 6 (lower is better)
Translates to: VTASHTDGSPRHRFL*TSSWDGSQGGPGGW
Trigger: CCAACCCCCGGGACCACCCTGTGATCCATCCCAACTACTTGTCAACAGAAACCGATGTCGAGGACTTCCGTCAGTGTGTGAGGCTGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp GGTACATATTGGCACCCAGCTCATGTCTCTGCGCCTTaGGGAAGTAGGGCAGGCAGTGTGCATAGTCCCAAC +
Preference number: 6 (lower is better)
Translates to: GTYWHPAHVSAP*GSRAGSVHSPN
Trigger: GTTGGGACTATGCACACTGCCTGCCCTACTTCCGCAAGGCGCAGAGACATGAGCTGGGTGCCAATATGTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp GGTTGGCACTTCTCAGTTTCAGCCAGCCCACACTTGTaGCCCTCATGGTTCCCACGTGCACCTGGTAAGCTT +
Preference number: 6 (lower is better)
Translates to: GWHFSVSASPHL*PSWFPRAPGKL
Trigger: AAGCTTACCAGGTGCACGTGGGAACCATGAGGGCCACAAGTGTGGGCTGGCTGAAACTGAGAAGTGCCAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp TTCCTGCTGGGTGGGTTTCCGCCCATGGTCAATCACTaGCGATGGCAGGAAGTGGAACTGGATGTCCGGATG +
Preference number: 6 (lower is better)
Translates to: FLLGGFPPMVNH*RWQEVELDVRM
Trigger: CATCCGGACATCCAGTTCCACTTCCTGCCATCGCAAGTGATTGACCATGGGCGGAAACCCACCCAGCAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp GCTTTCTCTGCAATCATTACCGTGGGAGCGTTCAGGTaGCCGCTGACCACGCTGGGCATGATGGAGGCATCA +
Preference number: 6 (lower is better)
Translates to: AFSAIITVGAFR*PLTTLGMMEAS
Trigger: TGATGCCTCCATCATGCCCAGCGTGGTCAGCGGCAACCTGAACGCTCCCACGGTAATGATTGCAGAGAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 90 bp GGCCCATCTTACAGGTGCACGAGGGGTGGTAAGCACTGTCTGCTTTaGCCCGCACAAAGGCATCTATCTCTTTGTCTGACTGGACGTGGC +
Preference number: 6 (lower is better)
Translates to: GPSYRCTRGGKHCLL*PAQRHLSLCLTGRG
Trigger: GCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCTTACCACCCCTCGTGCACCTGTAAGATGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp TTGGACACAAGGGCAGCCGGCATGTGGATCTTCCACTaGAGCCGCTTGCTCCCCATCAACAAGTCCTTAGGT +
Preference number: 6 (lower is better)
Translates to: LDTRAAGMWIFH*SRLLPINKSLG
Trigger: ACCTAAGGACTTGTTGATGGGGAGCAAGCGGCTTCAGTGGAAGATCCACATGCCGGCTGCCCTTGTGTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp GTGTCTCTGGCCGTCCTTGATGTACTCCACACCTACTaGACGGGTGCCCTCAAACAGCACTCTGCTTACAAG +
Preference number: 6 (lower is better)
Translates to: VSLAVLDVLHTY*TGALKQHSAYK
Trigger: CTTGTAAGCAGAGTGCTGTTTGAGGGCACCCGTGCAGTAGGTGTGGAGTACATCAAGGACGGCCAGAGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp TCTATCTCTTTGTCTGACTGGACGTGGCTTCCGGGCTaGAGCTCTTTTCCCCGAAATGGAGCCAAGGCTTCC +
Preference number: 6 (lower is better)
Translates to: SISLSDWTWLPG*SSFPRNGAKAS
Trigger: GGAAGCCTTGGCTCCATTTCGGGGAAAAGAGCTGCAGCCCGGAAGCCACGTCCAGTCAGACAAAGAGATAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp TTTGCCCGCACAAAGGCATCTATCTCTTTGTCTGACTaGACGTGGCTTCCGGGCTGCAGCTCTTTTCCCCGA +
Preference number: 6 (lower is better)
Translates to: FARTKASISLSD*TWLPGCSSFPR
Trigger: TCGGGGAAAAGAGCTGCAGCCCGGAAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGTGCGGGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp GTGGACAGTCATGTCCATCCAGCCGAAGCCCTCCTGTaGGAAGCCATTCATGTCTTCAGTGAAGGGGTAGCC +
Preference number: 6 (lower is better)
Translates to: VDSHVHPAEALL*EAIHVFSEGVA
Trigger: GGCTACCCCTTCACTGAAGACATGAATGGCTTCCAACAGGAGGGCTTCGGCTGGATGGACATGACTGTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp CTGTCTGCTTTTGCCCGCACAAAGGCATCTATCTCTTaGTCTGACTGGACGTGGCTTCCGGGCTGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: LSAFARTKASIS*SDWTWLPGCSS
Trigger: AGAGCTGCAGCCCGGAAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGTGCGGGCAAAAGCAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp CACACACTGACGGAAGTCCTCGACATCGGTTTCTGTTaGCAAGTAGTTGGGATGGATCACAGGGTGGTCCCG +
Preference number: 6 (lower is better)
Translates to: HTLTEVLDIGFC*QVVGMDHRVVP
Trigger: CGGGACCACCCTGTGATCCATCCCAACTACTTGTCAACAGAAACCGATGTCGAGGACTTCCGTCAGTGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp TGCTTTTGCCCGCACAAAGGCATCTATCTCTTTGTCTaGCTGGACGTGGCTTCCGGGCTGCAGCTCTTTTCC +
Preference number: 6 (lower is better)
Translates to: CFCPHKGIYLFV*LDVASGLQLFS
Trigger: GGAAAAGAGCTGCAGCCCGGAAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGTGCGGGCAAAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp CGCACAAAGGCATCTATCTCTTTGTCTGACTGGACGTaGCTTCCGGGCTGCAGCTCTTTTCCCCGAAATGGA +
Preference number: 6 (lower is better)
Translates to: RTKASISLSDWT*LPGCSSFPRNG
Trigger: TCCATTTCGGGGAAAAGAGCTGCAGCCCGGAAGCCACGTCCAGTCAGACAAAGAGATAGATGCCTTTGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp TGCAGGGTGTCCCTTAATAATGTCGGCTGCTTTCTCTaGAATCATTACCGTGGGAGCGTTCAGGTTGCCGCT +
Preference number: 6 (lower is better)
Translates to: CRVSLNNVGCFL*NHYRGSVQVAA
Trigger: AGCGGCAACCTGAACGCTCCCACGGTAATGATTGCAGAGAAAGCAGCCGACATTATTAAGGGACACCCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp TCACACACTGACGGAAGTCCTCGACATCGGTTTCTGTaGACAAGTAGTTGGGATGGATCACAGGGTGGTCCC +
Preference number: 6 (lower is better)
Translates to: SHTDGSPRHRFL*TSSWDGSQGGP
Trigger: GGGACCACCCTGTGATCCATCCCAACTACTTGTCAACAGAAACCGATGTCGAGGACTTCCGTCAGTGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp AAATGGAGCCAAGGCTTCCTGGGCAAAAATTTCTCGTaGCAGCCTCACACACTGACGGAAGTCCTCGACATC +
Preference number: 6 (lower is better)
Translates to: KWSQGFLGKNFS*QPHTLTEVLDI
Trigger: GATGTCGAGGACTTCCGTCAGTGTGTGAGGCTGTCACGAGAAATTTTTGCCCAGGAAGCCTTGGCTCCATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS GCA 72 bp CATCTTACAGGTGCACGAGGGGTGGTAAGCACTGTCTaGTTTTGCCCGCACAAAGGCATCTATCTCTTTGTC +
Preference number: 6 (lower is better)
Translates to: HLTGARGVVSTV*FCPHKGIYLFV
Trigger: GACAAAGAGATAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCTTACCACCCCTCGTGCACCTGTAAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CAA 72 bp TACAGGTGCACGAGGGGTGGTAAGCACTGTCTGCTTTaGCCCGCACAAAGGCATCTATCTCTTTGTCTGACT +
Preference number: 6 (lower is better)
Translates to: YRCTRGGKHCLL*PAQRHLSLCLT
Trigger: AGTCAGACAAAGAGATAGATGCCTTTGTGCGGGCAAAAGCAGACAGTGCTTACCACCCCTCGTGCACCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS TCA 72 bp TCCTGGGCAAAAATTTCTCGTGACAGCCTCACACACTaGCGGAAGTCCTCGACATCGGTTTCTGTTGACAAG +
Preference number: 6 (lower is better)
Translates to: SWAKISRDSLTH*RKSSTSVSVDK
Trigger: CTTGTCAACAGAAACCGATGTCGAGGACTTCCGTCAGTGTGTGAGGCTGTCACGAGAAATTTTTGCCCAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2
CDS CCA 72 bp TGTGATAGTACCAGTTGTATTTGTCATCACACAGGTTaGACACAAGGGCAGCCGGCATGTGGATCTTCCACT +
Preference number: 6 (lower is better)
Translates to: CDSTSCICHHTG*TQGQPACGSST
Trigger: AGTGGAAGATCCACATGCCGGCTGCCCTTGTGTCCAACCTGTGTGATGACAAATACAACTGGTACTATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067620.12
ENSMUST00000118917.2