RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHD8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053754

Ensembl transcript IDs: ENSMUST00000089752.11, ENSMUST00000149975.9, ENSMUST00000200169.6, ENSMUST00000227897.2

Found 701 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCCCATATTGTTCCCTaGCCCTCCCACATTTCCAAA +
Preference number: 2 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPHIVP*PSHISK
Trigger: TTTGGAAATGTGGGAGGGGCAGGGAACAATATGGGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCCCCATATTGTTCCCTaGCCCTCCCACATTTCCAAA +
Preference number: 2 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAPHIVP*PSHISK
Trigger: TTTGGAAATGTGGGAGGGGCAGGGAACAATATGGGG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTTCTTTTCACCTCCTaGAGTCTTGGGTTTCCCCAT +
Preference number: 2 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVFLFTS*SLGFPH
Trigger: ATGGGGAAACCCAAGACTTCAGGAGGTGAAAAGAAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCAATCCTCTCAAAATTaGGAGCAATTGGGTACAAGT +
Preference number: 2 (lower is better)
Translates to: CQRLGPALHSLWLMEASGQSSQN*EQLGTS
Trigger: ACTTGTACCCAATTGCTCCCAATTTTGAGAGGATTG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCACCTCCTGAAGTCTTaGGTTTCCCCATATTGTTCC +
Preference number: 2 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYHLLKS*VSPYCS
Trigger: GGAACAATATGGGGAAACCCAAGACTTCAGGAGGTG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTTTCTTTTCACCTCCTaGAGTCTTGGGTTTCCCCAT +
Preference number: 2 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYFLFTS*SLGFPH
Trigger: ATGGGGAAACCCAAGACTTCAGGAGGTGAAAAGAAA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTGGGTTTCCCCATATaGTTCCCTGCCCCTCCCACA +
Preference number: 3 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELGFPI*FPAPPT
Trigger: TGTGGGAGGGGCAGGGAACAATATGGGGAAACCCAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTCACCTCCTGAAGTCTaGGGTTTCCCCATATTGTTC +
Preference number: 3 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNESPPEV*GFPILF
Trigger: GAACAATATGGGGAAACCCAAGACTTCAGGAGGTGA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCCAATCCTCTCAAAATaGGGAGCAATTGGGTACAAG +
Preference number: 3 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVPILSK*GAIGYK
Trigger: CTTGTACCCAATTGCTCCCAATTTTGAGAGGATTGG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
3UTR GCA 72 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTaGTTCCCCAGAAACGAGGAAGTGGTCATTTATTAT +
Preference number: 3 (lower is better)
Translates to: GRGEHTSCSKLL*FPRNEEVVIYY
Trigger: ATAATAAATGACCACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGGTCAACGGCTGGGCTaGGGGTGGCGGCTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEGQRLG*GWRLRL
Trigger: CAGCCGCAGCCGCCACCCTCAGCCCAGCCGTTGACC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGTCAACGGCTGGGCTaGGGGTGGCGGCTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGQRLG*GWRLRL
Trigger: CAGCCGCAGCCGCCACCCTCAGCCCAGCCGTTGACC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGGCCGCCGCTGTGGTaGCTGCAGATGCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGPPLW*LQMPLP
Trigger: AGGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCAAGACAGGCTGGGCTaGCTGCTCCTGGCTGGTGGG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEQDRLG*LLLAGG
Trigger: CCCACCAGCCAGGAGCAGCCAGCCCAGCCTGTCTTG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCCAGAAGAGGCTCCCTaGGAAGAGCCAGCCTGTGGC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAPEEAP*EEPACG
Trigger: GCCACAGGCTGGCTCTTCTCAGGGAGCCTCTTCTGG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCAAGACAGGCTGGGCTaGCTGCTCCTGGCTGGTGGG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPQDRLG*LLLAGG
Trigger: CCCACCAGCCAGGAGCAGCCAGCCCAGCCTGTCTTG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTCTGCAAGACAGGCTaGGCTGGCTGCTCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVCKTG*AGCSWL
Trigger: CAGCCAGGAGCAGCCAGCCCAGCCTGTCTTGCAGAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGCTGGACAATGCGCTaGACAGCAGCCTGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGWTMR*TAAWFP
Trigger: TGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCCAGAAGAGGCTCCCTaGGAAGAGCCAGCCTGTGGC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPPEEAP*EEPACG
Trigger: GCCACAGGCTGGCTCTTCTCAGGGAGCCTCTTCTGG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGGCCGCCGCTGTGGTaGCTGCAGATGCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGPPLW*LQMPLP
Trigger: AGGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGCTGAGGGTGGCGGCTaGGGCTGTGGCTGTGGTTGT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPAEGGG*GCGCGC
Trigger: ACAACCACAGCCACAGCCGCAGCCGCCACCCTCAGC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGAGCCAGCCTGTGGCTaGAGCACCATCTTGAGCGGT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGEPACG*STILSG
Trigger: ACCGCTCAAGATGGTGCTGCAGCCACAGGCTGGCTC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTACTGCTGGATCATCTaGCGGCTGGCCAGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEYCWII*RLARLP
Trigger: TGGCAGCCTGGCCAGCCGGCAGATGATCCAGCAGTA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCATGGAAGCTGCACTaGCACTTCGTGGCGTGGGGA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPWKLH*HFVAWG
Trigger: TCCCCACGCCACGAAGTGGCAGTGCAGCTTCCATGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGAGACAGGGACCCAGTaGTTCCACCCTGCATCAGGG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGETGTQ*FHPASG
Trigger: CCCTGATGCAGGGTGGAAGCACTGGGTCCCTGTCTC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGAGACAGGGACCCAGTaGTTCCACCCTGCATCAGGG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAETGTQ*FHPASG
Trigger: CCCTGATGCAGGGTGGAAGCACTGGGTCCCTGTCTC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGACATGCCGATGTCCTTaGGGACCTCCGGACTGTGGC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNETCRCP*GPPDCG
Trigger: GCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTCACCCTCCTCCTCTaGCCGGACACTAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFTLLL*PDTRQL
Trigger: GAGCTGCCTAGTGTCCGGCCAGAGGAGGAGGGTGAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGTTTGGCTCACCCCATaGCGGGCTGCTCCTCGTAGG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPVWLTP*RAAPRR
Trigger: CCTACGAGGAGCAGCCCGCCATGGGGTGAGCCAAAC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGTGCAGCAGTGGAGTaGAGCATCGCGACAGGGATG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGAAVE*SIATGM
Trigger: CATCCCTGTCGCGATGCTCCACTCCACTGCTGCACC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCACTCTCGTCAGTGCTaGAGCTGGAGCTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGHSRQC*SWSWTR
Trigger: CCTCGTCCAGCTCCAGCTCCAGCACTGACGAGAGTG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCACTCTCGTCAGTGCTaGAGCTGGAGCTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEHSRQC*SWSWTR
Trigger: CCTCGTCCAGCTCCAGCTCCAGCACTGACGAGAGTG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCCTGCTGTCACTTCCTaGCTCCGGCGGTTAGAAGGC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAPAVTS*LRRLEG
Trigger: GCCTTCTAACCGCCGGAGCCAGGAAGTGACAGCAGG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTGCCACTTCGTGGCGTaGGGACTGGAGAGTCCCCAT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGCHFVA*GLESPH
Trigger: ATGGGGACTCTCCAGTCCCCACGCCACGAAGTGGCA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTGCACTGCCACTTCGTaGCGTGGGGACTGGAGAGTC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGCTATS*RGDWRV
Trigger: GACTCTCCAGTCCCCACGCCACGAAGTGGCAGTGCA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCAGCCACTAGGGGCTaGGCTGTACTGGTGATACCT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPATRG*AVLVIP
Trigger: AGGTATCACCAGTACAGCTCAGCCCCTAGTGGCTGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAGGAGCTCCCCATCATaGCGGACAGGTTCCCACCAT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGRSSPS*RTGSHH
Trigger: ATGGTGGGAACCTGTCCGTCATGATGGGGAGCTCCT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGGCTTGGCTGGACAATaGGCTGAACAGCAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAGLAGQ*AEQQPG
Trigger: ACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGACGTCAGTGTAACTaGAGGCTTCAGTGGGGGCCC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSARRQCN*RLQWGP
Trigger: GGGCCCCCACTGAAGCCTGCAGTTACACTGACGTCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTACTGCTGGATCATCTaGCGGCTGGCCAGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPYCWII*RLARLP
Trigger: TGGCAGCCTGGCCAGCCGGCAGATGATCCAGCAGTA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCTTCACTCTCGTCAGTaGTGGAGCTGGAGCTGGACG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSALHSRQ*WSWSWT
Trigger: CGTCCAGCTCCAGCTCCAGCACTGACGAGAGTGAAG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACGCCGCTGTGGTGACTaGAGATGCCTCTTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRRCGD*RCLFLR
Trigger: GCGGAGGAAGAGGCATCTGCAGTCACCACAGCGGCG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCGCCGCTGTGGTGACTaGAGATGCCTCTTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVRRCGD*RCLFLR
Trigger: GCGGAGGAAGAGGCATCTGCAGTCACCACAGCGGCG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTCATCACCAGCAGCTaGGGGAAGGCGGCACACTTG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFITSS*GKAAHL
Trigger: CAAGTGTGCCGCCTTCCCCCAGCTGCTGGTGATGAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTTTGGCTCACCCCATaGCGGGCTGCTCCTCGTAGG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVWLTP*RAAPRR
Trigger: CCTACGAGGAGCAGCCCGCCATGGGGTGAGCCAAAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGGTGCAGCAGTGGAGTaGAGCATCGCGACAGGGATG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPGAAVE*SIATGM
Trigger: CATCCCTGTCGCGATGCTCCACTCCACTGCTGCACC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCGTGAGGTACACTGCTaGTGCAGCAGTGGAGTGGAG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAREVHC*CSSGVE
Trigger: CTCCACTCCACTGCTGCACCAGCAGTGTACCTCACG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGTCCTCCAGTTTCACTaGTGGGACACTCCGGGACAG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEVLQFH*WDTPGQ
Trigger: CTGTCCCGGAGTGTCCCACCAGTGAAACTGGAGGAC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCTGAGAGTACAGCCTaGCAGACGAGGTCAATGCGG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPESTA*QTRSMR
Trigger: CCGCATTGACCTCGTCTGCCAGGCTGTACTCTCAGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTGGTGCAACAGGCCCTaGCAAAACCCGGTTGAACGC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAWCNRP*QNPVER
Trigger: GCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCCAGCCACTAGGGGCTaGGCTGTACTGGTGATACCT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPPATRG*AVLVIP
Trigger: AGGTATCACCAGTACAGCTCAGCCCCTAGTGGCTGG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGATTCCCAGCAGGAGCTaGACCCTTTACTGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGIPSRS*TLYWLE
Trigger: CTCCAGCCAGTAAAGGGTTCAGCTCCTGCTGGGAAT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCGGACTGTGGCTGTTaGAGGACCAAAGTGATGCGT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPDCGC*RTKVMR
Trigger: ACGCATCACTTTGGTCCTTCAACAGCCACAGTCCGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTGGGCATTCTTGGCTTaGGTCAAGGCTGCTAGCTGG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEWAFLA*VKAASW
Trigger: CCAGCTAGCAGCCTTGACTCAAGCCAAGAATGCCCA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGTAGGAACCTCCAGCTaGTCCACCACTGGGAACCAT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAVGTSS*STTGNH
Trigger: ATGGTTCCCAGTGGTGGATCAGCTGGAGGTTCCTAC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCGGAAGCGATCCCAGTaGAACTGCATGTTGTCAGGG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNERKRSQ*NCMLSG
Trigger: CCCTGACAACATGCAGTTTCACTGGGATCGCTTCCG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTCAAGACCTGGAGGCTaGCACAATGCCAGCCGATCT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGSRPGG*HNASRS
Trigger: AGATCGGCTGGCATTGTGTCAGCCTCCAGGTCTTGA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGAAGTGGTACTGCTGTaGCCCAGAGACGACACAGAC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAEVVLL*PRDDTD
Trigger: GTCTGTGTCGTCTCTGGGTCACAGCAGTACCACTTC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCATCCCAGTCTTCCCTaGAGTATGAGGGGCACAGCT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGHPSLP*SMRGTA
Trigger: AGCTGTGCCCCTCATACTGCAGGGAAGACTGGGATG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACCCGGAAGCAGTCAGTaGGCCCATAGGTGTGATGCC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPPGSSQ*AHRCDA
Trigger: GGCATCACACCTATGGGCGCACTGACTGCTTCCGGG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTACGTGAGGTACACTaGTGGTGCAGCAGTGGAGTG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVREVH*WCSSGV
Trigger: CACTCCACTGCTGCACCAGCAGTGTACCTCACGTAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGTACGTGAGGTACACTaGTGGTGCAGCAGTGGAGTG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAVREVH*WCSSGV
Trigger: CACTCCACTGCTGCACCAGCAGTGTACCTCACGTAC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCCCAAAATTCCTCCTaGTGTCACTTCCTGGCTCCG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPQNSS*CHFLAP
Trigger: CGGAGCCAGGAAGTGACAGCAGGAGGAATTTTGGGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACCATGGAAGCTGCACTaGCACTTCGTGGCGTGGGGA +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPPWKLH*HFVAWG
Trigger: TCCCCACGCCACGAAGTGGCAGTGCAGCTTCCATGG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCTCCGCCATGGAAGCTaGACTGCCACTTCGTGGCGT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLRHGS*TATSWR
Trigger: ACGCCACGAAGTGGCAGTGCAGCTTCCATGGCGGAG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATGAGGGGGTGCTGCTaGACCCATCACAAACGGCAT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEMRGCC*THHKRH
Trigger: ATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGAAAGTCTCTGCCCTaGGTTTTGGCCTGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSARKSLP*VLAWPH
Trigger: ATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACTGCTGGTGCAGCAGTaGAGTGGAGCATCGCGACAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLLVQQ*SGASRQ
Trigger: CTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTCCAGTTTCACTGGTaGGACACTCCGGGACAGAGG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLQFHW*DTPGQR
Trigger: CCTCTGTCCCGGAGTGTCCCACCAGTGAAACTGGAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTGCTGGAGCTGGAGCTaGACGAGGATGAAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSACWSWS*TRMKKR
Trigger: CCTCTTCTTCATCCTCGTCCAGCTCCAGCTCCAGCA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGTCCCCATCTTCTCCTaGGGTCAAAGAGGGACTGTC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAVPIFS*GQRGTV
Trigger: GACAGTCCCTCTTTGACCCCAGGAGAAGATGGGGAC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTGCCACTTCGTGGCGTaGGGACTGGAGAGTCCCCAT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVCHFVA*GLESPH
Trigger: ATGGGGACTCTCCAGTCCCCACGCCACGAAGTGGCA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGTGATACCTTGGGCCTaGATTTGTGCCACATGGGTG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEVIPWA*ICATWV
Trigger: CACCCATGTGGCACAAATTCAGGCCCAAGGTATCAC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCCGGACTGTGGCTGTTaGAGGACCAAAGTGATGCGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPPDCGC*RTKVMR
Trigger: ACGCATCACTTTGGTCCTTCAACAGCCACAGTCCGG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGAAGACAAAGCGGTCTaGGTCAGGCTTGCTAAAGCG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGEDKAV*VRLAKA
Trigger: CGCTTTAGCAAGCCTGACTCAGACCGCTTTGTCTTC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGGAGCTCCCCATCATaGCGGACAGGTTCCCACCAT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVRSSPS*RTGSHH
Trigger: ATGGTGGGAACCTGTCCGTCATGATGGGGAGCTCCT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGAAGGCCATTTCCCTaGGAGTACAGCCTGGCAGAC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPRRPFP*EYSLAD
Trigger: GTCTGCCAGGCTGTACTCTCAGGGAAATGGCCTTCT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGTTGGTGTTGATGTCTaGAAGACAGGCTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPVGVDV*KTGWAG
Trigger: GCCAGCCCAGCCTGTCTTGCAGACATCAACACCAAC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTGGGCCTGAATTTGTaGCACATGGGTGCCTGTGAC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSALGLNL*HMGACD
Trigger: GTCACAGGCACCCATGTGGCACAAATTCAGGCCCAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGCTTGGCTGGACAATaGGCTGAACAGCAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGLAGQ*AEQQPG
Trigger: ACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACTACTTTGGCAGGCTaGCCCTGGGCATTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPTTLAG*PWAFLA
Trigger: AGCCAAGAATGCCCAGGGGCAGCCTGCCAAAGTAGT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTGTGGTGACTGCAGATaGCTCTTCCTCCGCCATGGA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPCGDCR*LFLRHG
Trigger: TCCATGGCGGAGGAAGAGGCATCTGCAGTCACCACA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTTGCTGTTCTCTGGTaGAACAGGCCCTGGCAAAAC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELAVLW*NRPWQN
Trigger: GTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGAGGGGGTGCTGCTaGACCCATCACAAACGGCAT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPMRGCC*THHKRH
Trigger: ATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCAT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGAGTCCAGAGAGCTTaGCAGTCCAAGTGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGVQRA*QSKCFF
Trigger: GAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGCTGTTTCCTCTGGTaGAGGAACCAGGTCACTTGC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASCFLW*RNQVTC
Trigger: GCAAGTGACCTGGTTCCTCCACCAGAGGAAACAGCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTCCCAGGGACCTTCGTaGCCAACACTGTATTACCAG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGSQGPS*PTLYYQ
Trigger: CTGGTAATACAGTGTTGGCCACGAAGGTCCCTGGGA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTGGATTTTCTGCTGTaGCTGCTGCACCTGCAGCTG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLDFLL*LLHLQL
Trigger: CAGCTGCAGGTGCAGCAGCCACAGCAGAAAATCCAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACCCTGGGTTTTGGCCTaGCCCCATTATCTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPPWVLA*PHYLSL
Trigger: CAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCATCATCTGGGTCCTTTaGAGGACCCTGGAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAIIWVL*RTLEGF
Trigger: AAACCCCTCCAGGGTCCTCCAAAGGACCCAGATGAT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATCACCCTCATCATCTaGGTCCTTTGGAGGACCCTG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEITLII*VLWRTL
Trigger: CAGGGTCCTCCAAAGGACCCAGATGATGAGGGTGAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGGGCAATTCAAGACCTaGAGGCTGACACAATGCCAG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAGQFKT*RLTQCQ
Trigger: CTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACGTGAGGTACACTGCTaGTGCAGCAGTGGAGTGGAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPREVHC*CSSGVE
Trigger: CTCCACTCCACTGCTGCACCAGCAGTGTACCTCACG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCTCCAGTTTCACTGGTaGGACACTCCGGGACAGAGG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLQFHW*DTPGQR
Trigger: CCTCTGTCCCGGAGTGTCCCACCAGTGAAACTGGAG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGTCCTCCAGTTTCACTaGTGGGACACTCCGGGACAG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVVLQFH*WDTPGQ
Trigger: CTGTCCCGGAGTGTCCCACCAGTGAAACTGGAGGAC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACGTCAGTGCTGGAGCTaGAGCTGGACGAGGATGAAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRQCWS*SWTRMK
Trigger: CTTCATCCTCGTCCAGCTCCAGCTCCAGCACTGACG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCCTGAGAGTACAGCCTaGCAGACGAGGTCAATGCGG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVPESTA*QTRSMR
Trigger: CCGCATTGACCTCGTCTGCCAGGCTGTACTCTCAGG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGATGAAGCATGGTGCTaGAGTCTACATGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSADEAWC*SLHEGV
Trigger: CACCCCCTCATGTAGACTCCAGCACCATGCTTCATC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCCATCTTGGTTCATCTaGTCCAAGGAGTCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAPSWFI*SKESRE
Trigger: CTCTCTGGACTCCTTGGATCAGATGAACCAAGATGG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCATCTTGGTTCATCTaGTCCAAGGAGTCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPSWFI*SKESRE
Trigger: CTCTCTGGACTCCTTGGATCAGATGAACCAAGATGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAATTCCCAGCAGGAGCTaGACCCTTTACTGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPIPSRS*TLYWLE
Trigger: CTCCAGCCAGTAAAGGGTTCAGCTCCTGCTGGGAAT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCAGGTCCATGTGCTTaGGACTATCAAGTAGCTTGC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPGPCA*DYQVAC
Trigger: GCAAGCTACTTGATAGTCTCAAGCACATGGACCTGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCCAGGTCCATGTGCTTaGGACTATCAAGTAGCTTGC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAPGPCA*DYQVAC
Trigger: GCAAGCTACTTGATAGTCTCAAGCACATGGACCTGG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGAAGACAAAGCGGTCTaGGTCAGGCTTGCTAAAGCG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPEDKAV*VRLAKA
Trigger: CGCTTTAGCAAGCCTGACTCAGACCGCTTTGTCTTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTAGGAACCTCCAGCTaGTCCACCACTGGGAACCAT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVGTSS*STTGNH
Trigger: ATGGTTCCCAGTGGTGGATCAGCTGGAGGTTCCTAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTCTCCGTCGATGACTaGGATCTCCTCATCCATCAT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELSVDD*DLLIHH
Trigger: ATGATGGATGAGGAGATCTCAGTCATCGACGGAGAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGAAGGCCATTTCCCTaGGAGTACAGCCTGGCAGAC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVRRPFP*EYSLAD
Trigger: GTCTGCCAGGCTGTACTCTCAGGGAAATGGCCTTCT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCTGGCAAAACCCGGTTaGACGCAGTTTCAGCATAGT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLAKPG*TQFQHS
Trigger: ACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGCTTGGCAGTCCAAGTaGTTCTTCAATGGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGAWQSK*FFNGVL
Trigger: CAAGACCCCATTGAAGAAGCACTTGGACTGCCAAGC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTTGGTGTTGATGTCTaGAAGACAGGCTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVGVDV*KTGWAG
Trigger: GCCAGCCCAGCCTGTCTTGCAGACATCAACACCAAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAACTACTTTGGCAGGCTaGCCCTGGGCATTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPTTLAG*PWAFLA
Trigger: AGCCAAGAATGCCCAGGGGCAGCCTGCCAAAGTAGT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACATCCCAGTCTTCCCTaGAGTATGAGGGGCACAGCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPHPSLP*SMRGTA
Trigger: AGCTGTGCCCCTCATACTGCAGGGAAGACTGGGATG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTCTTGCTTTTTCTGGTaGTCCAACCTGCGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNESCFFW*SNLRFS
Trigger: GGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGGCAGCAGCAGTCTTaGTCTTCTTTGGCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSARQQQS*SSLASP
Trigger: AGGAGAAGCCAAAGAAGAGCAAGACTGCTGCTGCCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGGCATCAAACTTATATaGACCAGGGATGAGGCGACC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEGIKLI*TRDEAT
Trigger: GGTCGCCTCATCCCTGGTGCATATAAGTTTGATGCC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGTGGTGACTGCAGATaGCTCTTCCTCCGCCATGGA +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPCGDCR*LFLRHG
Trigger: TCCATGGCGGAGGAAGAGGCATCTGCAGTCACCACA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTTGCTGTTCTCTGGTaGAACAGGCCCTGGCAAAAC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLAVLW*NRPWQN
Trigger: GTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTACGGACCCGTTTCTTaGTGTTCTCTGGTGCAACAG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAYGPVS*CSLVQQ
Trigger: CTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGCTGTTTCCTCTGGTaGAGGAACCAGGTCACTTGC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPSCFLW*RNQVTC
Trigger: GCAAGTGACCTGGTTCCTCCACCAGAGGAAACAGCT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTGGAGCTGGAGCTGTaGATTCTTTGGGAAGTTCAG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELELEL*ILWEVQ
Trigger: CTGAACTTCCCAAAGAATCCACAGCTCCAGCTCCAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTTTACTGGTCGGCTTaGCTGGACAATGCGCTGAAC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAFYWSA*LDNALN
Trigger: GTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGACCAGCTGTTTTACTaGTCGGCTTGGCTGGACAAT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGDQLFY*SAWLDN
Trigger: ATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACTGGATTTTCTGCTGTaGCTGCTGCACCTGCAGCTG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLDFLL*LLHLQL
Trigger: CAGCTGCAGGTGCAGCAGCCACAGCAGAAAATCCAG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGAAGAGCCAGCCTGTaGCTGCAGCACCATCTTGAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRRASL*LQHHLE
Trigger: CTCAAGATGGTGCTGCAGCCACAGGCTGGCTCTTCT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTCTTGCCCTTCGTTTTaGAGGCAGCAGCAGTCTTGC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPSCPSF*RQQQSC
Trigger: GCAAGACTGCTGCTGCCTCCAAAACGAAGGGCAAGA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGGGCTCGGGTTTTATTaGACCAGTTACATCGACCTC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAGLGFY*TSYIDL
Trigger: GAGGTCGATGTAACTGGTCCAATAAAACCCGAGCCC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACTCTTGCACTGGTTCTaGGAGGATGGGCTCGGGTTT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLLHWF*EDGLGF
Trigger: AAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCTCTTGCACTGGTTCTaGGAGGATGGGCTCGGGTTT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLLHWF*EDGLGF
Trigger: AAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCTGGCCAGGCTGCCATaGTACACAATAGTGTTCATC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSALARLP*YTIVFI
Trigger: GATGAACACTATTGTGTACCATGGCAGCCTGGCCAG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTATGTTCTGCTGCGATaGCTTTGTCATCTGGCCTGC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAYVLLR*LCHLAC
Trigger: GCAGGCCAGATGACAAAGCCATCGCAGCAGAACATA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCATCTGGGTCCTTTaGAGGACCCTGGAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPIIWVL*RTLEGF
Trigger: AAACCCCTCCAGGGTCCTCCAAAGGACCCAGATGAT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGATGTTGCAGTCTGTTTaGCTCACCCCATGGCGGGCT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVMLQSV*LTPWRA
Trigger: AGCCCGCCATGGGGTGAGCCAAACAGACTGCAACAT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTCATCATAGAGCTTTaGGCGGGACCGGTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFIIEL*AGPVSS
Trigger: ACTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTTCTTGCTGTTCTCTaGTGCAACAGGCCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFLAVL*CNRPWQ
Trigger: TTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTTCTTGCTGTTCTCTaGTGCAACAGGCCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAFLAVL*CNRPWQ
Trigger: TTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAAGAAGGGTAGCCAGTaGTTCTCAAGCCTGGATGGT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGKKGSQ*FSSLDG
Trigger: ACCATCCAGGCTTGAGAACCACTGGCTACCCTTCTT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGAACAATCTTAGGAGCTaGCTGAGATGGTTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNENNLRS*LRWLSS
Trigger: GGAGGACAACCATCTCAGTCAGCTCCTAAGATTGTT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGGCTGGACAATGCGCTaGACAGCAGCCTGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTGWTMR*TAAWFP
Trigger: TGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTTGAAGGACCAAAGTaGTGCGTTTCGATTCACCCT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVEGPK*CVSIHP
Trigger: AGGGTGAATCGAAACGCATCACTTTGGTCCTTCAAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTGCTGCACCTGCAGCTaGATAGTTACTACTTTGGCA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNECCTCS*IVTTLA
Trigger: TGCCAAAGTAGTAACTATTCAGCTGCAGGTGCAGCA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGATTCTGAGGGGAACTaGGAAGGTTCCAAGAAATGC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGDSEGN*EGSKKC
Trigger: GCATTTCTTGGAACCTTCTCAGTTCCCCTCAGAATC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGATTCTGAGGGGAACTaGGAAGGTTCCAAGAAATGC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEDSEGN*EGSKKC
Trigger: GCATTTCTTGGAACCTTCTCAGTTCCCCTCAGAATC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTAGGCATATTGGTATaGCCTGCCCCTTTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSALGILV*PAPLER
Trigger: CCTTTCCAAAGGGGCAGGTCATACCAATATGCCTAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTTAGGCATATTGGTATaGCCTGCCCCTTTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLGILV*PAPLER
Trigger: CCTTTCCAAAGGGGCAGGTCATACCAATATGCCTAA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAAATGCCCTGGCTGTTaGGTTACCTGGGCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPKCPGC*VTWASS
Trigger: AGAGGAAGCCCAGGTAACTCAACAGCCAGGGCATTT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTACTTCATAGTCTTGTaGGGTGAGTCGGCTCCTAGC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPYFIVL*GESAPS
Trigger: GCTAGGAGCCGACTCACCTCACAAGACTATGAAGTA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGAGGAGGAGGATGGTaGCAACTTGCTCAAGTCCAG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVRGGGW*QLAQVQ
Trigger: CTGGACTTGAGCAAGTTGTCACCATCCTCCTCCTCT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGTCCAGATCAAGGTaGTTAGGCTCTTCCATGCAC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPRSRSR*LGSSMH
Trigger: GTGCATGGAAGAGCCTAATCACCTTGATCTGGACCT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACAGCAAACTCTGGATaGCCCTGTAACCACATCTCC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPTANSG*PCNHIS
Trigger: GGAGATGTGGTTACAGGGTCATCCAGAGTTTGCTGT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTGGCAAAACCCGGTTaGACGCAGTTTCAGCATAGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLAKPG*TQFQHS
Trigger: ACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGCTTGGCAGTCCAAGTaGTTCTTCAATGGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPAWQSK*FFNGVL
Trigger: CAAGACCCCATTGAAGAAGCACTTGGACTGCCAAGC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTGGCTCTTGGAGACCTaGAAGAGTCCTGCTGTTGGT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVWLLET*KSPAVG
Trigger: ACCAACAGCAGGACTCTTGCAGGTCTCCAAGAGCCA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTGGGCCTGAATTTGTaGCACATGGGTGCCTGTGAC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLGLNL*HMGACD
Trigger: GTCACAGGCACCCATGTGGCACAAATTCAGGCCCAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACTCCCTAACACAACATaGCGATGTCCTTGGGGACCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLPNTT*RCPWGP
Trigger: AGGTCCCCAAGGACATCGGCATGTTGTGTTAGGGAG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGAGCCAGCCTGTGGCTaGAGCACCATCTTGAGCGGT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTEPACG*STILSG
Trigger: ACCGCTCAAGATGGTGCTGCAGCCACAGGCTGGCTC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCTAGCAATGGCCTCTaGCACAATCCGATTTGCTTT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPSNGL*HNPICF
Trigger: AAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCCTAGCAATGGCCTCTaGCACAATCCGATTTGCTTT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAPSNGL*HNPICF
Trigger: AAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAACGTCTCTTCTGGATaGTGCTCTCTTCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPNVSSG*CSLRPP
Trigger: GGGAGGACGAAGAGAGCAGCATCCAGAAGAGACGTT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTTCTTCCAGGCATTTaGCTGTGGACGATTCACCCT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAFLPGI*LWTIHP
Trigger: AGGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTGCTCCAGGTCCATGTaGTTGAGACTATCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNECSRSM*LRLSSS
Trigger: GCTACTTGATAGTCTCAAGCACATGGACCTGGAGCA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCCCGGAAGCAGTCAGTaGGCCCATAGGTGTGATGCC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYPGSSQ*AHRCDA
Trigger: GGCATCACACCTATGGGCGCACTGACTGCTTCCGGG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCATATACCAGGAGATaGTTTTCTACCCGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPYTRR*FSTRKQ
Trigger: CTGCTTCCGGGTAGAAAAGCATCTCCTGGTATATGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAGGATGGTGACAACTTaGTCAAGTCCAGCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGRMVTT*SSPAQS
Trigger: ACTCTGAGCTGGACTTGAGCAAGTTGTCACCATCCT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGCTCTTTGTCTTTCCTaGAGTAGCAGCAACTCAGGG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPALCLS*SSSNSG
Trigger: CCCTGAGTTGCTGCTACTGCAGGAAAGACAAAGAGC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGGCAGACGAGGTCAATaGGGTTTATCAGAACACGAT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAGRRGQ*GLSEHD
Trigger: ATCGTGTTCTGATAAACCGCATTGACCTCGTCTGCC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTCCGCCATGGAAGCTaGACTGCCACTTCGTGGCGT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLRHGS*TATSWR
Trigger: ACGCCACGAAGTGGCAGTGCAGCTTCCATGGCGGAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGTCTACATGAGGGGGTaGTGCTGCACCCATCACAAA +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVVYMRG*CCTHHK
Trigger: TTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGAC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGGAGTCCAGAGAGCTTaGCAGTCCAAGTGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVGVQRA*QSKCFF
Trigger: GAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGAAGCTGTTTCCTCTaGTGGAGGAACCAGGTCACT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGSCFL*WRNQVT
Trigger: AGTGACCTGGTTCCTCCACCAGAGGAAACAGCTTCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGAGCTGTGGATTCTTTaGGAAGTTCAGTGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAELWIL*EVQWKL
Trigger: CAGCTTCCACTGAACTTCCCAAAGAATCCACAGCTC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGGCTCAAGATCTCCTaGCTCTTGGAGACCTGCAAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPWLKIS*LLETCK
Trigger: CTTGCAGGTCTCCAAGAGCCAGGAGATCTTGAGCCA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATGAAAGGATTCCCTTaGCTCAAGATCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEMKGFP*LKISWL
Trigger: GAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGACAATGGATACACCTaGTCGAAGGGGTGTACCAGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPDNGYT*SKGCTS
Trigger: ACTGGTACACCCCTTCGACCAGGTGTATCCATTGTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCCCAGGGACCTTCGTaGCCAACACTGTATTACCAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSQGPS*PTLYYQ
Trigger: CTGGTAATACAGTGTTGGCCACGAAGGTCCCTGGGA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTTTACTGGTCGGCTTaGCTGGACAATGCGCTGAAC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFYWSA*LDNALN
Trigger: GTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGACCAGCTGTTTTACTaGTCGGCTTGGCTGGACAAT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPDQLFY*SAWLDN
Trigger: ATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAACATGCCGATGTCCTTaGGGACCTCCGGACTGTGGC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTTCRCP*GPPDCG
Trigger: GCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTTCACCCTCCTCCTCTaGCCGGACACTAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYFTLLL*PDTRQL
Trigger: GAGCTGCCTAGTGTCCGGCCAGAGGAGGAGGGTGAA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCTTGCCCTTCGTTTTaGAGGCAGCAGCAGTCTTGC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSCPSF*RQQQSC
Trigger: GCAAGACTGCTGCTGCCTCCAAAACGAAGGGCAAGA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTCTGGGTGCCTTGACTaGATCCGTTTAAATTCCCGA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNESGCLD*IRLNSR
Trigger: TCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTCTGGGTGCCTTGACTaGATCCGTTTAAATTCCCGA +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGSGCLD*IRLNSR
Trigger: TCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTGGCCAGGCTGCCATaGTACACAATAGTGTTCATC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLARLP*YTIVFI
Trigger: GATGAACACTATTGTGTACCATGGCAGCCTGGCCAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGACAGTACACGAGGATaGCACGGCATATTGTCTCAA +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGDSTRG*HGILSQ
Trigger: TTGAGACAATATGCCGTGCCATCCTCGTGTACTGTC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGACAGTACACGAGGATaGCACGGCATATTGTCTCAA +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSADSTRG*HGILSQ
Trigger: TTGAGACAATATGCCGTGCCATCCTCGTGTACTGTC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAACACCTTCTCTGCCTaGTCTCCAATAACCTCCTGT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSANTFSA*SPITSC
Trigger: ACAGGAGGTTATTGGAGACCAGGCAGAGAAGGTGTT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCAATCTCACTGGCTATaGCACCTCCTAACACCTTCT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEQSHWL*HLLTPS
Trigger: AGAAGGTGTTAGGAGGTGCCATAGCCAGTGAGATTG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCAATCTCACTGGCTATaGCACCTCCTAACACCTTCT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAQSHWL*HLLTPS
Trigger: AGAAGGTGTTAGGAGGTGCCATAGCCAGTGAGATTG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTCCTTTGGAGGACCCTaGAGGGGTTTATATTCAGGA +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGSFGGP*RGLYSG
Trigger: TCCTGAATATAAACCCCTCCAGGGTCCTCCAAAGGA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGATCACCCTCATCATCTaGGTCCTTTGGAGGACCCTG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVITLII*VLWRTL
Trigger: CAGGGTCCTCCAAAGGACCCAGATGATGAGGGTGAT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGGCAATTCAAGACCTaGAGGCTGACACAATGCCAG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGQFKT*RLTQCQ
Trigger: CTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTGCTGGTGCAGCAGTaGAGTGGAGCATCGCGACAG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLLVQQ*SGASRQ
Trigger: CTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCCTGCTGTCACTTCCTaGCTCCGGCGGTTAGAAGGC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYPAVTS*LRRLEG
Trigger: GCCTTCTAACCGCCGGAGCCAGGAAGTGACAGCAGG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGCACTGCCACTTCGTaGCGTGGGGACTGGAGAGTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYCTATS*RGDWRV
Trigger: GACTCTCCAGTCCCCACGCCACGAAGTGGCAGTGCA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGTTCGCTGGCTGTACTaGTTCCATTCCCAAACAGTT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEVRWLY*FHSQTV
Trigger: AACTGTTTGGGAATGGAACCAGTACAGCCAGCGAAC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGATGAAGCATGGTGCTaGAGTCTACATGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVDEAWC*SLHEGV
Trigger: CACCCCCTCATGTAGACTCCAGCACCATGCTTCATC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGGTGATGATGAAGCATaGTGCTGGAGTCTACATGAG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAGDDEA*CWSLHE
Trigger: CTCATGTAGACTCCAGCACCATGCTTCATCATCACC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGAAGGGTAGCCAGTaGTTCTCAAGCCTGGATGGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPKKGSQ*FSSLDG
Trigger: ACCATCCAGGCTTGAGAACCACTGGCTACCCTTCTT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTGTGATGATGGAGGCTaGGGTACAATCTGGATTTTC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGCDDGG*GTIWIF
Trigger: GAAAATCCAGATTGTACCTCAGCCTCCATCATCACA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTTAACTTGGCGGTTTaGACGTCTCTTCTGGATGCT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLNLAV*TSLLDA
Trigger: AGCATCCAGAAGAGACGTTCAAACCGCCAAGTTAAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTGGACAATGGAGCAATaGCCAAAAAGGGACCATGGA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPWTMEQ*PKRDHG
Trigger: TCCATGGTCCCTTTTTGGTCATTGCTCCATTGTCCA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGAGTACTTTCCTCAGGTaGCTTTTCAACAGGAGCATC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNESTFLR*LFNRSI
Trigger: GATGCTCCTGTTGAAAAGTCACCTGAGGAAAGTACT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGACGTCAGTGTAACTaGAGGCTTCAGTGGGGGCCC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRRQCN*RLQWGP
Trigger: GGGCCCCCACTGAAGCCTGCAGTTACACTGACGTCT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCTGTAACACTATCTTaGCTGGTAGACTCCCTAACA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPVTLS*LVDSLT
Trigger: TGTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAACAATCTGGATTTTCTaGTGTGGCTGCTGCACCTGC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPTIWIF*CGCCTC
Trigger: GCAGGTGCAGCAGCCACAGCAGAAAATCCAGATTGT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGGCAGCAGCAGTCTTaGTCTTCTTTGGCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRQQQS*SSLASP
Trigger: AGGAGAAGCCAAAGAAGAGCAAGACTGCTGCTGCCT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTCTCCACAAAGAACTaGATGGAAGGAAGAGTCTCG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFSTKN*MEGRVS
Trigger: CGAGACTCTTCCTTCCATGCAGTTCTTTGTGGAGAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTTCTCCACAAAGAACTaGATGGAAGGAAGAGTCTCG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGFSTKN*MEGRVS
Trigger: CGAGACTCTTCCTTCCATGCAGTTCTTTGTGGAGAA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTTCTTCCAGGCATTTaGCTGTGGACGATTCACCCT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFLPGI*LWTIHP
Trigger: AGGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGCATCAAACTTATATaGACCAGGGATGAGGCGACC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGIKLI*TRDEAT
Trigger: GGTCGCCTCATCCCTGGTGCATATAAGTTTGATGCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGTGAGTAACACTTTATaGTCCAGGTCCATGTGCTTG +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAVSNTL*SRSMCL
Trigger: CAAGCACATGGACCTGGAGCATAAAGTGTTACTCAC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCATATTGGTATGACCTaGCCCTTTGGAAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEHIGMT*PFGKEG
Trigger: TCCTTCCTTTCCAAAGGGGCAGGTCATACCAATATG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGCACAAGGCAGGGTCTaGCCTCATGGTATTGTATTT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPAQGRV*PHGIVF
Trigger: AAATACAATACCATGAGGGCAGACCCTGCCTTGTGC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCAACACTCTATGTTCTaGTGCGATGGCTTTGTCATC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAQHSMF*CDGFVI
Trigger: GATGACAAAGCCATCGCAGCAGAACATAGAGTGTTG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGAGAAGTCTGGGTCCTaGATGATGTTGCAGTCTGTT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPEKSGS*MMLQSV
Trigger: AACAGACTGCAACATCATGCAGGACCCAGACTTCTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGATGGTGACAACTTaGTCAAGTCCAGCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPRMVTT*SSPAQS
Trigger: ACTCTGAGCTGGACTTGAGCAAGTTGTCACCATCCT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTTCACTCTCGTCAGTaGTGGAGCTGGAGCTGGACG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLHSRQ*WSWSWT
Trigger: CGTCCAGCTCCAGCTCCAGCACTGACGAGAGTGAAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTACGGACCCGTTTCTTaGTGTTCTCTGGTGCAACAG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVYGPVS*CSLVQQ
Trigger: CTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCATAAAAGGCAGAGATaGAGAAGTGGTACTGCTGTG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEHKRQR*RSGTAV
Trigger: CACAGCAGTACCACTTCTGCATCTCTGCCTTTTATG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCATAAAAGGCAGAGATaGAGAAGTGGTACTGCTGTG +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGHKRQR*RSGTAV
Trigger: CACAGCAGTACCACTTCTGCATCTCTGCCTTTTATG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCTGGAGCTGGAGCTGTaGATTCTTTGGGAAGTTCAG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLELEL*ILWEVQ
Trigger: CTGAACTTCCCAAAGAATCCACAGCTCCAGCTCCAG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGGCTGGTGGGCTGAGTaGTATAATCATGCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPGWWAE*YNHARL
Trigger: TAACCTTGCATGATTATACCACTCAGCCCACCAGCC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGAACCCTTTACTGGCTaGAGGACCAGCTGTTTTACT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPEPFTG*RTSCFT
Trigger: AGTAAAACAGCTGGTCCTCCAGCCAGTAAAGGGTTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCCCTGGGTTTTGGCCTaGCCCCATTATCTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYPWVLA*PHYLSL
Trigger: CAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATTATCCTTCTCCAGCTaGGAGATCGTTGCCCACTCA +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLSFSS*EIVAHS
Trigger: TGAGTGGGCAACGATCTCCCAGCTGGAGAAGGATAA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCACCTCTACGTAGTCTaGATTGAAAGGCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAHLYVV*IERLFI
Trigger: GATGAAGAGCCTTTCAATCCAGACTACGTAGAGGTG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTATGTTCTGCTGCGATaGCTTTGTCATCTGGCCTGC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVYVLLR*LCHLAC
Trigger: GCAGGCCAGATGACAAAGCCATCGCAGCAGAACATA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATTCATCACCAGCAGCTaGGGGAAGGCGGCACACTTG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTFITSS*GKAAHL
Trigger: CAAGTGTGCCGCCTTCCCCCAGCTGCTGGTGATGAA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCAGGTTCCCACCATTTaGGCAATTCAAGACCTGGAG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVQVPTI*AIQDLE
Trigger: CTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCGTCAGTGCTGGAGCTaGAGCTGGACGAGGATGAAG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRQCWS*SWTRMK
Trigger: CTTCATCCTCGTCCAGCTCCAGCTCCAGCACTGACG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACCTCTTCCTCCGCCATaGAAGCTGCACTGCCACTTC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTPLPPP*KLHCHF
Trigger: GAAGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAGG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCCTCTTCCTCCGCCATaGAAGCTGCACTGCCACTTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYPLPPP*KLHCHF
Trigger: GAAGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAGG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATTTCTAGAGTTCGCTaGCTGTACTGGTTCCATTCC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEISRVR*LYWFHS
Trigger: GGAATGGAACCAGTACAGCCAGCGAACTCTAGAAAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCATTTCTAGAGTTCGCTaGCTGTACTGGTTCCATTCC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAISRVR*LYWFHS
Trigger: GGAATGGAACCAGTACAGCCAGCGAACTCTAGAAAT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGGTGCAACAGGCCCTaGCAAAACCCGGTTGAACGC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYWCNRP*QNPVER
Trigger: GCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGTGGTTCTCAAGCCTaGATGGTGATGGTGGTGATG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSGSQA*MVMVVM
Trigger: CATCACCACCATCACCATCCAGGCTTGAGAACCACT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGTGGTTCTCAAGCCTaGATGGTGATGGTGGTGATG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVSGSQA*MVMVVM
Trigger: CATCACCACCATCACCATCCAGGCTTGAGAACCACT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAACAATCTTAGGAGCTaGCTGAGATGGTTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVNNLRS*LRWLSS
Trigger: GGAGGACAACCATCTCAGTCAGCTCCTAAGATTGTT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTTGAAGGACCAAAGTaGTGCGTTTCGATTCACCCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVEGPK*CVSIHP
Trigger: AGGGTGAATCGAAACGCATCACTTTGGTCCTTCAAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTGCTGCACCTGCAGCTaGATAGTTACTACTTTGGCA +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVCCTCS*IVTTLA
Trigger: TGCCAAAGTAGTAACTATTCAGCTGCAGGTGCAGCA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCTACGTAGTCTGGATTaGAAGGCTCTTCATCTTCAT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSALRSLD*KALHLH
Trigger: ATGAAGATGAAGAGCCTTTCAATCCAGACTACGTAG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTACGTAGTCTGGATTaGAAGGCTCTTCATCTTCAT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELRSLD*KALHLH
Trigger: ATGAAGATGAAGAGCCTTTCAATCCAGACTACGTAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTCCTTGTCAACACTGTaGGACTCGTCCAGTATCCTA +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVSLSTL*DSSSIL
Trigger: TAGGATACTGGACGAGTCTCACAGTGTTGACAAGGA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCCTTGTCAACACTGTaGGACTCGTCCAGTATCCTA +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSLSTL*DSSSIL
Trigger: TAGGATACTGGACGAGTCTCACAGTGTTGACAAGGA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCAGTTCTGGGTGCCTTaGCTGGATCCGTTTAAATTC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVQFWVP*LDPFKF
Trigger: GAATTTAAACGGATCCAGTCAAGGCACCCAGAACTG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACAGTTCTGGGTGCCTTaGCTGGATCCGTTTAAATTC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPQFWVP*LDPFKF
Trigger: GAATTTAAACGGATCCAGTCAAGGCACCCAGAACTG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGGACAATGGAGCAATaGCCAAAAAGGGACCATGGA +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPWTMEQ*PKRDHG
Trigger: TCCATGGTCCCTTTTTGGTCATTGCTCCATTGTCCA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTGCAGGTGGAAATCTTaGGGTATAATATGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSACRWKS*GIIWQA
Trigger: AGCTTGCCATATTATACCTCAAGATTTCCACCTGCA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTAACTTGTCAATaGGAACTAACTTGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEEVTCQ*ELTCQL
Trigger: CAGCTGGCAAGTTAGTTCTCATTGACAAGTTACTTC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTCCCCTTCTTCTTATaGAACAGTGGATGTCCATCT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFPFFL*NSGCPS
Trigger: AGATGGACATCCACTGTTTCATAAGAAGAAGGGGAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTACTACTGCTGTGTTaGAAGGTGTTATGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELLLLC*KVLCRD
Trigger: GTCTCTGCATAACACCTTTCAACACAGCAGTAGTAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGAAGTGGTACTGCTGTaGCCCAGAGACGACACAGAC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYEVVLL*PRDDTD
Trigger: GTCTGTGTCGTCTCTGGGTCACAGCAGTACCACTTC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCACTGCTCTTCTTCCTaGGTTTCTTTTCACCCTCCT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVHCSSS*VSFHPP
Trigger: AGGAGGGTGAAAAGAAACGCAGGAAGAAGAGCAGTG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTGTTTAGCTTACTCTTaGCCTTCGTTTTGGAGGCAG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPCLAYS*PSFWRQ
Trigger: CTGCCTCCAAAACGAAGGGCAAGAGTAAGCTAAACA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGCTCCAGGTCCATGTaGTTGAGACTATCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPCSRSM*LRLSSS
Trigger: GCTACTTGATAGTCTCAAGCACATGGACCTGGAGCA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGGTTCCAAGAAATaGAGTAGACTGAACAGTTCC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEEGSKK*SRLNSS
Trigger: GGAACTGTTCAGTCTACTGCATTTCTTGGAACCTTC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCATATTGGTATGACCTaGCCCTTTGGAAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPHIGMT*PFGKEG
Trigger: TCCTTCCTTTCCAAAGGGGCAGGTCATACCAATATG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCAGGATTTTCTCTTCTaGACCATTGATGAGGTACGG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPQDFLF*TIDEVR
Trigger: CCGTACCTCATCAATGGTGCAGAAGAGAAAATCCTG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGAAGCAACAAAGCTTaGCTTGGCAAAAGTAGAACC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSARSNKA*LGKSRT
Trigger: GGTTCTACTTTTGCCAAGGCAAGCTTTGTTGCTTCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCCAGGCGAGCAAAAGTaGGGAAGCGATCCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYPGEQK*GSDPSE
Trigger: TTCACTGGGATCGCTTCCGCACTTTTGCTCGCCTGG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACCAGGCGAGCAAAAGTaGGGAAGCGATCCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTPGEQK*GSDPSE
Trigger: TTCACTGGGATCGCTTCCGCACTTTTGCTCGCCTGG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGAGGTACACTGCTGGTaGAGCAGTGGAGTGGAGCAT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYEVHCW*SSGVEH
Trigger: ATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGAGGTACACTGCTGGTaGAGCAGTGGAGTGGAGCAT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTEVHCW*SSGVEH
Trigger: ATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACCCCAAAATTCCTCCTaGTGTCACTTCCTGGCTCCG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTPQNSS*CHFLAP
Trigger: CGGAGCCAGGAAGTGACAGCAGGAGGAATTTTGGGG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATACATGAGGGGGTGCTaGTGCACCCATCACAAACGG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTYMRGC*CTHHKR
Trigger: CCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTACATGAGGGGGTGCTaGTGCACCCATCACAAACGG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYYMRGC*CTHHKR
Trigger: CCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCTTTGGGAAGTTCAGTaGAAGCTGTTTCCTCTGGTG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLWEVQ*KLFPLV
Trigger: CACCAGAGGAAACAGCTTCCACTGAACTTCCCAAAG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGAGCTGTGGATTCTTTaGGAAGTTCAGTGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVELWIL*EVQWKL
Trigger: CAGCTTCCACTGAACTTCCCAAAGAATCCACAGCTC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTATTACCAGAGACAATaGATACACCTGGTCGAAGGG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPYYQRQ*IHLVEG
Trigger: CCCTTCGACCAGGTGTATCCATTGTCTCTGGTAATA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGCCCCTGGGCATTCTTaGCTTGAGTCAAGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYAPGHS*LESRLL
Trigger: TAGCAGCCTTGACTCAAGCCAAGAATGCCCAGGGGC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGCCCCTGGGCATTCTTaGCTTGAGTCAAGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTAPGHS*LESRLL
Trigger: TAGCAGCCTTGACTCAAGCCAAGAATGCCCAGGGGC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAGAAAGTCTCTGCCCTaGGTTTTGGCCTGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTRKSLP*VLAWPH
Trigger: ATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAGAAGAGCCAGCCTGTaGCTGCAGCACCATCTTGAG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTRRASL*LQHHLE
Trigger: CTCAAGATGGTGCTGCAGCCACAGGCTGGCTCTTCT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATCAGGCTCTTGCACTaGTTCTGGGAGGATGGGCTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYIRLLH*FWEDGL
Trigger: GAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGAT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTCTTCACAACTCGCATaGAAAGCACTTTGTCCACAA +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASSQLA*KALCPQ
Trigger: TTGTGGACAAAGTGCTTTCCATGCGAGTTGTGAAGA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCGTTTTAGTTTCTGGTaGATCCTCTTATCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGRFSFW*ILLSFS
Trigger: GGAGAAGGATAAGAGGATCCACCAGAAACTAAAACG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATATGTCAATCTCACTaGCTATGGCACCTCCTAACA +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEICQSH*LWHLLT
Trigger: TGTTAGGAGGTGCCATAGCCAGTGAGATTGACATAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACAGCTGATCCACCACTaGGAACCATATGTCAATCTC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPQLIHH*EPYVNL
Trigger: GAGATTGACATATGGTTCCCAGTGGTGGATCAGCTG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCAGGGTCTGCCCTCATaGTATTGTATTTCTCATAGC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPQGLPS*YCISHS
Trigger: GCTATGAGAAATACAATACCATGAGGGCAGACCCTG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAATGTTGCAGTCTGTTTaGCTCACCCCATGGCGGGCT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTMLQSV*LTPWRA
Trigger: AGCCCGCCATGGGGTGAGCCAAACAGACTGCAACAT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCAGAAAAGAGAAGTCTaGGTCCTGCATGATGTTGCA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPQKREV*VLHDVA
Trigger: TGCAACATCATGCAGGACCCAGACTTCTCTTTTCTG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATGCTGGAGCTGGAGCTaGACGAGGATGAAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTCWSWS*TRMKKR
Trigger: CCTCTTCTTCATCCTCGTCCAGCTCCAGCTCCAGCA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGACTGTCTAATAAATaGTTGCCTGGCCCCAAAATT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGLSNK*LPGPKI
Trigger: AATTTTGGGGCCAGGCAACCATTTATTAGACAGTCC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGTCCCCATCTTCTCCTaGGGTCAAAGAGGGACTGTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYVPIFS*GQRGTV
Trigger: GACAGTCCCTCTTTGACCCCAGGAGAAGATGGGGAC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGTGATGATGGAGGCTaGGGTACAATCTGGATTTTC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPCDDGG*GTIWIF
Trigger: GAAAATCCAGATTGTACCTCAGCCTCCATCATCACA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGAAGTAACTTGTCAATaGGAACTAACTTGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPEVTCQ*ELTCQL
Trigger: CAGCTGGCAAGTTAGTTCTCATTGACAAGTTACTTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGGGATAGACAGACCTaGATGATTCTGCAATTCTTT +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSARDRQT*MILQFF
Trigger: AAAGAATTGCAGAATCATTCAGGTCTGTCTATCCCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAAATGCCCTGGCTGTTaGGTTACCTGGGCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTKCPGC*VTWASS
Trigger: AGAGGAAGCCCAGGTAACTCAACAGCCAGGGCATTT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGTACTTTCCTCAGGTaGCTTTTCAACAGGAGCATC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSTFLR*LFNRSI
Trigger: GATGCTCCTGTTGAAAAGTCACCTGAGGAAAGTACT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAGAGGAGGAGGATGGTaGCAACTTGCTCAAGTCCAG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTRGGGW*QLAQVQ
Trigger: CTGGACTTGAGCAAGTTGTCACCATCCTCCTCCTCT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCCTGTAACACTATCTTaGCTGGTAGACTCCCTAACA +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVPVTLS*LVDSLT
Trigger: TGTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAACGTCTCTTCTGGATaGTGCTCTCTTCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTNVSSG*CSLRPP
Trigger: GGGAGGACGAAGAGAGCAGCATCCAGAAGAGACGTT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGACTATCAAGTAGCTTaGAATTACGGTTCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPDYQVA*NYGSSA
Trigger: GGCTGAAGAACCGTAATTGCAAGCTACTTGATAGTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCAGGATTTTCTCTTCTaGACCATTGATGAGGTACGG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVQDFLF*TIDEVR
Trigger: CCGTACCTCATCAATGGTGCAGAAGAGAAAATCCTG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGAAGCAACAAAGCTTaGCTTGGCAAAAGTAGAACC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPRSNKA*LGKSRT
Trigger: GGTTCTACTTTTGCCAAGGCAAGCTTTGTTGCTTCT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGTCTACATGAGGGGGTaGTGCTGCACCCATCACAAA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTVYMRG*CCTHHK
Trigger: TTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGAC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGATCTCCTGGCTCTTaGAGACCTGCAAGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRSPGS*RPARVL
Trigger: CAGGACTCTTGCAGGTCTCCAAGAGCCAGGAGATCT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAGATCTCCTGGCTCTTaGAGACCTGCAAGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTRSPGS*RPARVL
Trigger: CAGGACTCTTGCAGGTCTCCAAGAGCCAGGAGATCT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGACGGAGGAGTTTGGTaGAGCTTTAAGAATAACAAT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEDGGVW*SFKNNN
Trigger: ATTGTTATTCTTAAAGCTCCACCAAACTCCTCCGTC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATATTACCAGAGACAATaGATACACCTGGTCGAAGGG +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPYYQRQ*IHLVEG
Trigger: CCCTTCGACCAGGTGTATCCATTGTCTCTGGTAATA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCTGGTTCTGGGAGGATaGGCTCGGGTTTTATTGGAC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYLVLGG*ARVLLD
Trigger: GTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGACCAAAAAGGGACCATaGATGCCTACATTATATACC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGTKKGP*MPTLYT
Trigger: GGTATATAATGTAGGCATCCATGGTCCCTTTTTGGT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACAGGGTCTGCCCTCATaGTATTGTATTTCTCATAGC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPQGLPS*YCISHS
Trigger: GCTATGAGAAATACAATACCATGAGGGCAGACCCTG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGGCCACAAAACCATaGAAGTACTTGGTAAGGCTT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPMATKP*KYLVRL
Trigger: AAGCCTTACCAAGTACTTCCATGGTTTTGTGGCCAT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTTCATCATAGAGCTTTaGGCGGGACCGGTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYFIIEL*AGPVSS
Trigger: ACTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTCTCCATCTTCATTTaGGAATCCATCTTGGGACAT +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFSIFI*ESILGH
Trigger: ATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCTTCTTATGAAACAGTaGATGTCCATCTCCCATTAC +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLLMKQ*MSISHY
Trigger: GTAATGGGAGATGGACATCCACTGTTTCATAAGAAG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGCAGAGATGCAGAAGTaGTACTGCTGTGACCCAGAG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTAEMQK*YCCDPE
Trigger: CTCTGGGTCACAGCAGTACCACTTCTGCATCTCTGC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGCTGAGCTGTACTGGTaGTACCTTGGGCCTGAATTT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYAELYW*YLGPEF
Trigger: AAATTCAGGCCCAAGGTATCACCAGTACAGCTCAGC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTCATCTCAAAAGTGGTaGTCAAGGCATCAAACTTAT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGSSQKW*SRHQTY
Trigger: ATAAGTTTGATGCCTTGATCACCACTTTTGAGATGA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGAAATGCAGTAGACTaGACAGTTCCTCTACGGTAT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRNAVD*TVPLRY
Trigger: ATACCGTAGAGGAACTGTTCAGTCTACTGCATTTCT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTCTTGGAGAACTGTTaGATTCCAGTAATGTTGCCA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFLENC*IPVMLP
Trigger: TGGCAACATTACTGGAATTCAACAGTTCTCCAAGAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCATAGACAGACCTGAATaGTTCTGCAATTCTTTTGTC +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAIDRPE*FCNSFV
Trigger: GACAAAAGAATTGCAGAATCATTCAGGTCTGTCTAT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATAGACAGACCTGAATaGTTCTGCAATTCTTTTGTC +
Preference number: 4 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEIDRPE*FCNSFV
Trigger: GACAAAAGAATTGCAGAATCATTCAGGTCTGTCTAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTCTCCGTCGATGACTaGGATCTCCTCATCCATCAT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLSVDD*DLLIHH
Trigger: ATGATGGATGAGGAGATCTCAGTCATCGACGGAGAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTCCCCTTCTTCTTATaGAACAGTGGATGTCCATCT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVFPFFL*NSGCPS
Trigger: AGATGGACATCCACTGTTTCATAAGAAGAAGGGGAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGGTCCAGATCAAGGTaGTTAGGCTCTTCCATGCAC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRSRSR*LGSSMH
Trigger: GTGCATGGAAGAGCCTAATCACCTTGATCTGGACCT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACAGCAAACTCTGGATaGCCCTGTAACCACATCTCC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYTANSG*PCNHIS
Trigger: GGAGATGTGGTTACAGGGTCATCCAGAGTTTGCTGT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATTACTACTGCTGTGTTaGAAGGTGTTATGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLLLLC*KVLCRD
Trigger: GTCTCTGCATAACACCTTTCAACACAGCAGTAGTAA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAATCTTCACTGGAGTCTaGGTTGGCTGGCATCATAGG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTIFTGV*VGWHHR
Trigger: CCTATGATGCCAGCCAACTCAGACTCCAGTGAAGAT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATCTTCACTGGAGTCTaGGTTGGCTGGCATCATAGG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYIFTGV*VGWHHR
Trigger: CCTATGATGCCAGCCAACTCAGACTCCAGTGAAGAT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGGCTGCTAGCTGGTTaGCCTGTAACACTATCTTGC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRLLAG*PVTLSC
Trigger: GCAAGATAGTGTTACAGGGCAACCAGCTAGCAGCCT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAACAATCTGGATTTTCTaGTGTGGCTGCTGCACCTGC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTTIWIF*CGCCTC
Trigger: GCAGGTGCAGCAGCCACAGCAGAAAATCCAGATTGT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGACTATCAAGTAGCTTaGAATTACGGTTCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPDYQVA*NYGSSA
Trigger: GGCTGAAGAACCGTAATTGCAAGCTACTTGATAGTC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTTCCGGATCCAGTCTaGCTTATGAATGTCAAAAGT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFPDPV*LMNVKS
Trigger: ACTTTTGACATTCATAAGGCAGACTGGATCCGGAAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTGTTTTTCCCGCCTTaGGATTTCTTTGAGCTTAAA +
Preference number: 4 (lower is better)
Translates to: TVPDPPAVATVWPGTGSALFFPP*DFFELK
Trigger: TTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGCTCTTTGTCTTTCCTaGAGTAGCAGCAACTCAGGG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYALCLS*SSSNSG
Trigger: CCCTGAGTTGCTGCTACTGCAGGAAAGACAAAGAGC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTGTCTAATAAATGGTTaGCTGGCCCCAAAATTCCTC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVCLING*LAPKFL
Trigger: GAGGAATTTTGGGGCCAGGCAACCATTTATTAGACA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAATGCAGAAGTGGTACTaGTGTGACCCAGAGACGACA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTMQKWY*CDPETT
Trigger: TGTCGTCTCTGGGTCACAGCAGTACCACTTCTGCAT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGACGGAGGAGTTTGGTaGAGCTTTAAGAATAACAAT +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPDGGVW*SFKNNN
Trigger: ATTGTTATTCTTAAAGCTCCACCAAACTCCTCCGTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGTGACGGAGGAGTTTaGTGGAGCTTTAAGAATAAC +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPCDGGV*WSFKNN
Trigger: GTTATTCTTAAAGCTCCACCAAACTCCTCCGTCACA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGACAATGGATACACCTaGTCGAAGGGGTGTACCAGT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYDNGYT*SKGCTS
Trigger: ACTGGTACACCCCTTCGACCAGGTGTATCCATTGTC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGTCAAGGCTGCTAGCTaGTTGCCCTGTAACACTATC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTVKAAS*LPCNTI
Trigger: GATAGTGTTACAGGGCAACCAGCTAGCAGCCTTGAC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGTCAAGGCTGCTAGCTaGTTGCCCTGTAACACTATC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYVKAAS*LPCNTI
Trigger: GATAGTGTTACAGGGCAACCAGCTAGCAGCCTTGAC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGTAATGGTGGACAATaGAGCAATGACCAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVSNGGQ*SNDQKG
Trigger: CCCTTTTTGGTCATTGCTCCATTGTCCACCATTACT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATATGACCTGCCCCTTTaGAAAGGAAGGAGAAATTCT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPYDLPL*KGRRNS
Trigger: AGAATTTCTCCTTCCTTTCCAAAGGGGCAGGTCATA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAAGATCAGAACTTTATaGCCACCAGCTTTAAGCTTT +
Preference number: 4 (lower is better)
Translates to: CQRLGPALHSLWLMEASGKIRTL*PPALSF
Trigger: AAAGCTTAAAGCTGGTGGCCATAAAGTTCTGATCTT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGATGGCCACAAAACCATaGAAGTACTTGGTAAGGCTT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVMATKP*KYLVRL
Trigger: AAGCCTTACCAAGTACTTCCATGGTTTTGTGGCCAT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACAGGTTCCCACCATTTaGGCAATTCAAGACCTGGAG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTQVPTI*AIQDLE
Trigger: CTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTTGGGAATCCATCTTaGGACATAGTAAGGGACAGA +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVFGNPS*DIVRDR
Trigger: TCTGTCCCTTACTATGTCCCAAGATGGATTCCCAAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGACTGTCTAATAAATaGTTGCCTGGCCCCAAAATT +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGLSNK*LPGPKI
Trigger: AATTTTGGGGCCAGGCAACCATTTATTAGACAGTCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTTAACTTGGCGGTTTaGACGTCTCTTCTGGATGCT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLNLAV*TSLLDA
Trigger: AGCATCCAGAAGAGACGTTCAAACCGCCAAGTTAAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGAAGTGTCTCATCTaGGCCATTTTTGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPKKCLI*AIFVLN
Trigger: GTTCAAAACAAAAATGGCTCAGATGAGACACTTCTT...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTGACCCCTTCTAACTaGTATTCCCGTAATTGGTTT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLTPSN*YSRNWF
Trigger: AAACCAATTACGGGAATATCAGTTAGAAGGGGTCAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATTCTTGGAGAACTGTTaGATTCCAGTAATGTTGCCA +
Preference number: 4 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPFLENC*IPVMLP
Trigger: TGGCAACATTACTGGAATTCAACAGTTCTCCAAGAA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACACTGCTCTTCTTCCTaGGTTTCTTTTCACCCTCCT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTHCSSS*VSFHPP
Trigger: AGGAGGGTGAAAAGAAACGCAGGAAGAAGAGCAGTG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAAAAGGGACCATGGATaGCTACATTATATACCTCCT +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVKRDHG*LHYIPP
Trigger: AGGAGGTATATAATGTAGGCATCCATGGTCCCTTTT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACCATATACCAGGAGATaGTTTTCTACCCGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTPYTRR*FSTRKQ
Trigger: CTGCTTCCGGGTAGAAAAGCATCTCCTGGTATATGG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGCACAAGGCAGGGTCTaGCCTCATGGTATTGTATTT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTAQGRV*PHGIVF
Trigger: AAATACAATACCATGAGGGCAGACCCTGCCTTGTGC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTGTTTTTCCCGCCTTaGGATTTCTTTGAGCTTAAA +
Preference number: 4 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLFFPP*DFFELK
Trigger: TTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGAGAAGTCTGGGTCCTaGATGATGTTGCAGTCTGTT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTEKSGS*MMLQSV
Trigger: AACAGACTGCAACATCATGCAGGACCCAGACTTCTC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGGCAGACGAGGTCAATaGGGTTTATCAGAACACGAT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYGRRGQ*GLSEHD
Trigger: ATCGTGTTCTGATAAACCGCATTGACCTCGTCTGCC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGGCTGGTGGGCTGAGTaGTATAATCATGCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYGWWAE*YNHARL
Trigger: TAACCTTGCATGATTATACCACTCAGCCCACCAGCC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAATGAAAGGATTCCCTTaGCTCAAGATCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTMKGFP*LKISWL
Trigger: GAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCAT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGAACCCTTTACTGGCTaGAGGACCAGCTGTTTTACT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYEPFTG*RTSCFT
Trigger: AGTAAAACAGCTGGTCCTCCAGCCAGTAAAGGGTTC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGACCAAAAAGGGACCATaGATGCCTACATTATATACC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVTKKGP*MPTLYT
Trigger: GGTATATAATGTAGGCATCCATGGTCCCTTTTTGGT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAACACCTTCTCTGCCTaGTCTCCAATAACCTCCTGT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTNTFSA*SPITSC
Trigger: ACAGGAGGTTATTGGAGACCAGGCAGAGAAGGTGTT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCAGCTGATCCACCACTaGGAACCATATGTCAATCTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYQLIHH*EPYVNL
Trigger: GAGATTGACATATGGTTCCCAGTGGTGGATCAGCTG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTCCTTTGGAGGACCCTaGAGGGGTTTATATTCAGGA +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYSFGGP*RGLYSG
Trigger: TCCTGAATATAAACCCCTCCAGGGTCCTCCAAAGGA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGTTCGCTGGCTGTACTaGTTCCATTCCCAAACAGTT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTVRWLY*FHSQTV
Trigger: AACTGTTTGGGAATGGAACCAGTACAGCCAGCGAAC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGGTGATGATGAAGCATaGTGCTGGAGTCTACATGAG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYGDDEA*CWSLHE
Trigger: CTCATGTAGACTCCAGCACCATGCTTCATCATCACC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAAGAAGTGTCTCATCTaGGCCATTTTTGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVKKCLI*AIFVLN
Trigger: GTTCAAAACAAAAATGGCTCAGATGAGACACTTCTT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTGCAAGAAGGCGATTaGCTGAATAGTTTTGCCCAA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLQEGD*LNSFAQ
Trigger: TTGGGCAAAACTATTCAGTCAATCGCCTTCTTGCAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGTGAGTAACACTTTATaGTCCAGGTCCATGTGCTTG +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTVSNTL*SRSMCL
Trigger: CAAGCACATGGACCTGGAGCATAAAGTGTTACTCAC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCAACACTCTATGTTCTaGTGCGATGGCTTTGTCATC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYQHSMF*CDGFVI
Trigger: GATGACAAAGCCATCGCAGCAGAACATAGAGTGTTG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACACCTCTACGTAGTCTaGATTGAAAGGCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTHLYVV*IERLFI
Trigger: GATGAAGAGCCTTTCAATCCAGACTACGTAGAGGTG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCAGAAAAGAGAAGTCTaGGTCCTGCATGATGTTGCA +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYQKREV*VLHDVA
Trigger: TGCAACATCATGCAGGACCCAGACTTCTCTTTTCTG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTCAGACTCTCCAGATTaGGGACCTGAACAGTACTTT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYSDSPD*GPEQYF
Trigger: AAAGTACTGTTCAGGTCCCCAATCTGGAGAGTCTGA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATCAGACTCTCCAGATTaGGGACCTGAACAGTACTTT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTSDSPD*GPEQYF
Trigger: AAAGTACTGTTCAGGTCCCCAATCTGGAGAGTCTGA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAGAAATGCAGTAGACTaGACAGTTCCTCTACGGTAT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTRNAVD*TVPLRY
Trigger: ATACCGTAGAGGAACTGTTCAGTCTACTGCATTTCT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGCAGGTGGAAATCTTaGGGTATAATATGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYCRWKS*GIIWQA
Trigger: AGCTTGCCATATTATACCTCAAGATTTCCACCTGCA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGTTCTCTCTTGTAGCTaGGTTGATAGGCTGTTACTA +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYVLSCS*VDRLLL
Trigger: TAGTAACAGCCTATCAACGCAGCTACAAGAGAGAAC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGTCTAATAAATGGTTaGCTGGCCCCAAAATTCCTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYCLING*LAPKFL
Trigger: GAGGAATTTTGGGGCCAGGCAACCATTTATTAGACA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTAGCCATCAATCTATaGTTCTGGAATGTTAACTTC +
Preference number: 4 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLAINL*FWNVNF
Trigger: GAAGTTAACATTCCAGAAGCATAGATTGATGGCTAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGTGACGGAGGAGTTTaGTGGAGCTTTAAGAATAAC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYCDGGV*WSFKNN
Trigger: GTTATTCTTAAAGCTCCACCAAACTCCTCCGTCACA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATCTTCACAACTCGCATaGAAAGCACTTTGTCCACAA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTSSQLA*KALCPQ
Trigger: TTGTGGACAAAGTGCTTTCCATGCGAGTTGTGAAGA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCGTTTTAGTTTCTGGTaGATCCTCTTATCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRFSFW*ILLSFS
Trigger: GGAGAAGGATAAGAGGATCCACCAGAAACTAAAACG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGTAATGGTGGACAATaGAGCAATGACCAAAAAGGG +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYSNGGQ*SNDQKG
Trigger: CCCTTTTTGGTCATTGCTCCATTGTCCACCATTACT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATATGACCTGCCCCTTTaGAAAGGAAGGAGAAATTCT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTYDLPL*KGRRNS
Trigger: AGAATTTCTCCTTCCTTTCCAAAGGGGCAGGTCATA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATTTGGGAATCCATCTTaGGACATAGTAAGGGACAGA +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTFGNPS*DIVRDR
Trigger: TCTGTCCCTTACTATGTCCCAAGATGGATTCCCAAA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTTGACCCCTTCTAACTaGTATTCCCGTAATTGGTTT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYLTPSN*YSRNWF
Trigger: AAACCAATTACGGGAATATCAGTTAGAAGGGGTCAA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGGGATAGACAGACCTaGATGATTCTGCAATTCTTT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRDRQT*MILQFF
Trigger: AAAGAATTGCAGAATCATTCAGGTCTGTCTATCCCT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CCA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATTCTCCATCTTCATTTaGGAATCCATCTTGGGACAT +
Preference number: 4 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTFSIFI*ESILGH
Trigger: ATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR TCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTCATCTCAAAAGTGGTaGTCAAGGCATCAAACTTAT +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYSSQKW*SRHQTY
Trigger: ATAAGTTTGATGCCTTGATCACCACTTTTGAGATGA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR GCA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTTAGCCATCAATCTATaGTTCTGGAATGTTAACTTC +
Preference number: 4 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYLAINL*FWNVNF
Trigger: GAAGTTAACATTCCAGAAGCATAGATTGATGGCTAA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TGGCTCACCCCATGGCGGGCTGCTCCTCGTAGGAGCTCCCCATCATaGCGGACAGGTTCCCACCATTTGGGCAATTCAAGACCTGGAGGC +
Preference number: 5 (lower is better)
Translates to: WLTPWRAAPRRSSPS*RTGSHHLGNSRPGG
Trigger: GCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTGTCCGTCATGATGGGGAGCTCCTACGAGGAGCAGCCCGCCATGGGGTGAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp GATGCGTTTCGATTCACCCTGGGTAGGTGTAGACGTCAGTGTAACTaGAGGCTTCAGTGGGGGCCCGGCAGCCCCAGGATTCCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: DAFRFTLGRCRRQCN*RLQWGPGSPRIPSR
Trigger: CCTGCTGGGAATCCTGGGGCTGCCGGGCCCCCACTGAAGCCTGCAGTTACACTGACGTCTACACCTACCCAGGGTGAATCGAAACGCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp GCATCTGGGCGCAGGGGTGATGGTGAAGCAGTACGTGAGGTACACTaGTGGTGCAGCAGTGGAGTGGAGCATCGCGACAGGGATGCAGCT +
Preference number: 5 (lower is better)
Translates to: ASGRRGDGEAVREVH*WCSSGVEHRDRDAA
Trigger: AGCTGCATCCCTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTCACGTACTGCTTCACCATCACCCCTGCGCCCAGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp TCGCCGAAGTTTCGTAAACTGGGCCGCCGCTGTGGTGACTGCAGATaGCTCTTCCTCCGCCATGGAAGCTGCACTGCCACTTCGTGGCGT +
Preference number: 5 (lower is better)
Translates to: SPKFRKLGRRCGDCR*LFLRHGSCTATSWR
Trigger: ACGCCACGAAGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCCAGTTTACGAAACTTCGGCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp CATGCCTCGCCGAAGTTTCGTAAACTGGGCCGCCGCTGTGGTGACTaGAGATGCCTCTTCCTCCGCCATGGAAGCTGCACTGCCACTTCG +
Preference number: 5 (lower is better)
Translates to: HASPKFRKLGRRCGD*RCLFLRHGSCTATS
Trigger: CGAAGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCCAGTTTACGAAACTTCGGCGAGGCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp CCGGCAGCCCCAGGATTCCCAGCAGGAGCTGAACCCTTTACTGGCTaGAGGACCAGCTGTTTTACTGGTCGGCTTGGCTGGACAATGCGC +
Preference number: 5 (lower is better)
Translates to: PAAPGFPAGAEPFTG*RTSCFTGRLGWTMR
Trigger: GCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCCTCCAGCCAGTAAAGGGTTCAGCTCCTGCTGGGAATCCTGGGGCTGCCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp ATGCCTCTTCCTCCGCCATGGAAGCTGCACTGCCACTTCGTGGCGTaGGGACTGGAGAGTCCCCATCTTCTCCTGGGGTCAAAGAGGGAC +
Preference number: 5 (lower is better)
Translates to: MPLPPPWKLHCHFVA*GLESPHLLLGSKRD
Trigger: GTCCCTCTTTGACCCCAGGAGAAGATGGGGACTCTCCAGTCCCCACGCCACGAAGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGACTCGAGGTATGTTTaGCTCGCCCCTGGCCCGGGC +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPDSRYV*LAPGPG
Trigger: GCCCGGGCCAGGGGCGAGCAAAACATACCTCGAGTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp GGTACAGAAAGTCTCTGCCCTGGGTTTTGGCCTGGCCCCATTATCTaGGCCTGCTGCACAGAGGACAGGGTCAACGGCTGGGCTGAGGGT +
Preference number: 5 (lower is better)
Translates to: GTESLCPGFWPGPII*ACCTEDRVNGWAEG
Trigger: ACCCTCAGCCCAGCCGTTGACCCTGTCCTCTGTGCAGCAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCTGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TGCTCCAACCTGCGGTTCTCCTCCATCCCAGTCTTCCCTGCAGTATaGGGGGCACAGCTTGCTGGGGATGACAGGGCTGCCACTTCACTG +
Preference number: 5 (lower is better)
Translates to: CSNLRFSSIPVFPAV*GAQLAGDDRAATSL
Trigger: CAGTGAAGTGGCAGCCCTGTCATCCCCAGCAAGCTGTGCCCCTCATACTGCAGGGAAGACTGGGATGGAGGAGAACCGCAGGTTGGAGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp CTGGCTGGAGGACCAGCTGTTTTACTGGTCGGCTTGGCTGGACAATaGGCTGAACAGCAGCCTGGTTCCCAGGGACCTTCGTGGCCAACA +
Preference number: 5 (lower is better)
Translates to: LAGGPAVLLVGLAGQ*AEQQPGSQGPSWPT
Trigger: TGTTGGCCACGAAGGTCCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCCTCCAGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp CGGACACTAGGCAGCTCATCCTCATTCAGGACTCGAGGTATGTTTTaGTCGCCCCTGGCCCGGGCCCTAGCAATGGCCTCTGCCACAATC +
Preference number: 5 (lower is better)
Translates to: RTLGSSSSFRTRGMF*SPLARALAMASATI
Trigger: GATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGCGAGCAAAACATACCTCGAGTCCTGAATGAGGATGAGCTGCCTAGTGTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAACATGCCGATGTCCTaGGGGACCTCCGGACTGTGG +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGNMPMS*GTSGLW
Trigger: CCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGACTCGAGGTATGTTTaGCTCGCCCCTGGCCCGGGC +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVDSRYV*LAPGPG
Trigger: GCCCGGGCCAGGGGCGAGCAAAACATACCTCGAGTC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTCCTCCCGGGGCGATaGTGCAGGCATAACTTCCAC +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVLPGR*CRHNFH
Trigger: GTGGAAGTTATGCCTGCACAATCGCCCCGGGAGGAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGATGTTGCAGTCTGTTaGGCTCACCCCATGGCGGGC +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEDVAVC*AHPMAG
Trigger: GCCCGCCATGGGGTGAGCCAAACAGACTGCAACATC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp GCCCCTGGCCCGGGCCCTAGCAATGGCCTCTGCCACAATCCGATTTaGTTTCTCTTGCTTTTTCTGGTGCTCCAACCTGCGGTTCTCCTC +
Preference number: 5 (lower is better)
Translates to: APGPGPSNGLCHNPI*FLLLFLVLQPAVLL
Trigger: GAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp ATGGTGAAGCAGTACGTGAGGTACACTGCTGGTGCAGCAGTGGAGTaGAGCATCGCGACAGGGATGCAGCTGATGCTCCCGCCTGATGGT +
Preference number: 5 (lower is better)
Translates to: MVKQYVRYTAGAAVE*SIATGMQLMLPPDG
Trigger: ACCATCAGGCGGGAGCATCAGCTGCATCCCTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTCACGTACTGCTTCACCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTCTCTGCCCTGGGTTTaGGCCTGGCCCCATTATCTG +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASLPWV*AWPHYL
Trigger: CAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTCGCCATCAGGCTCTaGCACTGGTTCTGGGAGGAT +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELAIRL*HWFWED
Trigger: ATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCCATCATCTGGGTCCTTaGGAGGACCCTGGAGGGGTT +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAHHLGP*EDPGGV
Trigger: AACCCCTCCAGGGTCCTCCAAAGGACCCAGATGATG...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGGAAGGCGGCACACTaGTCGACACATGGCCACAAA +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGKAAH*STHGHK
Trigger: TTTGTGGCCATGTGTCGACAAGTGTGCCGCCTTCCC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGGGAAGGCGGCACACTaGTCGACACATGGCCACAAA +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEGKAAH*STHGHK
Trigger: TTTGTGGCCATGTGTCGACAAGTGTGCCGCCTTCCC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCTTCATCATAGAGCTTaGGGCGGGACCGGTCAGCAG +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLHHRA*GGTGQQ
Trigger: CTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAAG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TGGAGGACCAGCTGTTTTACTGGTCGGCTTGGCTGGACAATGCGCTaGACAGCAGCCTGGTTCCCAGGGACCTTCGTGGCCAACACTGTA +
Preference number: 5 (lower is better)
Translates to: WRTSCFTGRLGWTMR*TAAWFPGTFVANTV
Trigger: TACAGTGTTGGCCACGAAGGTCCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp CTGCTGGTGCAGCAGTGGAGTGGAGCATCGCGACAGGGATGCAGCTaGTGCTCCCGCCTGATGGTTCTGCATATAATTCATACGGGCAGC +
Preference number: 5 (lower is better)
Translates to: LLVQQWSGASRQGCS*CSRLMVLHIIHTGS
Trigger: GCTGCCCGTATGAATTATATGCAGAACCATCAGGCGGGAGCATCAGCTGCATCCCTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp CTGTGGCTGCAGCACCATCTTGAGCGGTACAGAAAGTCTCTGCCCTaGGTTTTGGCCTGGCCCCATTATCTGAGCCTGCTGCACAGAGGA +
Preference number: 5 (lower is better)
Translates to: LWLQHHLERYRKSLP*VLAWPHYLSLLHRG
Trigger: TCCTCTGTGCAGCAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCTGTACCGCTCAAGATGGTGCTGCAGCCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGTGACTTTTCCACCGTaGGCTGTCCCAGCCACTAGG +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPVTFPP*AVPATR
Trigger: CCTAGTGGCTGGGACAGCCAACGGTGGAAAAGTCAC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATATGAGGGGCACAGCTaGCTGGGGATGACAGGGCTG +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPYEGHS*LGMTGL
Trigger: CAGCCCTGTCATCCCCAGCAAGCTGTGCCCCTCATA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGAGGCAGCAGCAGTCTaGCTCTTCTTTGGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAEAAAV*LFFGFS
Trigger: GGAGAAGCCAAAGAAGAGCAAGACTGCTGCTGCCTC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTCTTGCCCTTCGTTTaGGAGGCAGCAGCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELLPFV*EAAAVL
Trigger: CAAGACTGCTGCTGCCTCCAAAACGAAGGGCAAGAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTCCTCCCGGGGCGATaGTGCAGGCATAACTTCCAC +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVLPGR*CRHNFH
Trigger: GTGGAAGTTATGCCTGCACAATCGCCCCGGGAGGAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGCAGCTTGTCGAAGGTaGCCTCTAACTCGCCCATCA +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEAACRR*PLTRPS
Trigger: TGATGGGCGAGTTAGAGGCAACCTTCGACAAGCTGC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGCGGTCGATAGCAGCTaGTCGAAGGTTGCCTCTAAC +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGAVDSS*SKVASN
Trigger: GTTAGAGGCAACCTTCGACAAGCTGCTATCGACCGC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGCGGTCGATAGCAGCTaGTCGAAGGTTGCCTCTAAC +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEAVDSS*SKVASN
Trigger: GTTAGAGGCAACCTTCGACAAGCTGCTATCGACCGC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCATCATCTGGGTCCTTaGGAGGACCCTGGAGGGGTT +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPHHLGP*EDPGGV
Trigger: AACCCCTCCAGGGTCCTCCAAAGGACCCAGATGATG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGATGTTGCAGTCTGTTaGGCTCACCCCATGGCGGGC +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPDVAVC*AHPMAG
Trigger: GCCCGCCATGGGGTGAGCCAAACAGACTGCAACATC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGGGTCCTGCATGATGTaGCAGTCTGTTTGGCTCACC +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEGSCMM*QSVWLT
Trigger: GGTGAGCCAAACAGACTGCAACATCATGCAGGACCC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCTTCATCATAGAGCTTaGGGCGGGACCGGTCAGCAG +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLHHRA*GGTGQQ
Trigger: CTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAAG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCTCAGGTTGCAGTGTaGGTAACCGCAAGGCAGTAC +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPQVAV*VTARQY
Trigger: GTACTGCCTTGCGGTTACCAACACTGCAACCTGAGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TCCTCCATATACGCTAGAAATCGGGGATCAACAGCAAACTCTGGATaGCCCTGTAACCACATCTCCAGCTCCGCCCGGCGAGGGGCCTCA +
Preference number: 5 (lower is better)
Translates to: SSIYARNRGSTANSG*PCNHISSSARRGAS
Trigger: TGAGGCCCCTCGCCGGGCGGAGCTGGAGATGTGGTTACAGGGTCATCCAGAGTTTGCTGTTGATCCCCGATTTCTAGCGTATATGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp CCCAACCATATACCAGGAGATGCTTTTCTACCCGGAAGCAGTCAGTaGGCCCATAGGTGTGATGCCGGTCATGTCTTCGGGAACGTGGCC +
Preference number: 5 (lower is better)
Translates to: PNHIPGDAFLPGSSQ*AHRCDAGHVFGNVA
Trigger: GGCCACGTTCCCGAAGACATGACCGGCATCACACCTATGGGCGCACTGACTGCTTCCGGGTAGAAAAGCATCTCCTGGTATATGGTTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp CCGTTGTTGTTTTTCCCGCCTTGCGATTTCTTTGAGCTTAAAGGCTaGTTCACATCGTCGGCGTCTCCGGTCCCCACGTTCCGCAGCCTC +
Preference number: 5 (lower is better)
Translates to: PLLFFPPCDFFELKG*FTSSASPVPTFRSL
Trigger: GAGGCTGCGGAACGTGGGGACCGGAGACGCCGACGATGTGAAGCAGCCTTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAACAACGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp CTGGGGGAGACACCTGTGGCAGAGACACCCATGAAAGGATTCCCTTaGCTCAAGATCTCCTGGCTCTTGGAGACCTGCAAGAGTCCTGCT +
Preference number: 5 (lower is better)
Translates to: LGETPVAETPMKGFP*LKISWLLETCKSPA
Trigger: AGCAGGACTCTTGCAGGTCTCCAAGAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGGTGTCTCCCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGTGACTTTTCCACCGTaGGCTGTCCCAGCCACTAGG +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVVTFPP*AVPATR
Trigger: CCTAGTGGCTGGGACAGCCAACGGTGGAAAAGTCAC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTTTTACTGGTCGGCTaGGCTGGACAATGCGCTGAA +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVLLVG*AGQCAE
Trigger: TTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCTCTGCCCTGGGTTTaGGCCTGGCCCCATTATCTG +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSLPWV*AWPHYL
Trigger: CAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCGGTCTGAGTCAGGCTaGCTAAAGCGGTCGATAGCA +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPRSESG*LKRSIA
Trigger: TGCTATCGACCGCTTTAGCAAGCCTGACTCAGACCG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGGGTCCTGCATGATGTaGCAGTCTGTTTGGCTCACC +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPGSCMM*QSVWLT
Trigger: GGTGAGCCAAACAGACTGCAACATCATGCAGGACCC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCTACGGACCCGTTTCTaGCTGTTCTCTGGTGCAACA +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNELRTRF*LFSGAT
Trigger: TGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCCTCAGGTTGCAGTGTaGGTAACCGCAAGGCAGTAC +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPPQVAV*VTARQY
Trigger: GTACTGCCTTGCGGTTACCAACACTGCAACCTGAGG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTCACTGGAGTCTGAGTaGGCTGGCATCATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASLESE*AGIIGS
Trigger: TGACCCTATGATGCCAGCCAACTCAGACTCCAGTGA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TCCTGCTGTCACTTCCTGGCTCCGGCGGTTAGAAGGCCATTTCCCTaGGAGTACAGCCTGGCAGACGAGGTCAATGCGGTTTATCAGAAC +
Preference number: 5 (lower is better)
Translates to: SCCHFLAPAVRRPFP*EYSLADEVNAVYQN
Trigger: GTTCTGATAAACCGCATTGACCTCGTCTGCCAGGCTGTACTCTCAGGGAAATGGCCTTCTAACCGCCGGAGCCAGGAAGTGACAGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp CTCCTCGTAGGAGCTCCCCATCATGACGGACAGGTTCCCACCATTTaGGCAATTCAAGACCTGGAGGCTGACACAATGCCAGCCGATCTT +
Preference number: 5 (lower is better)
Translates to: LLVGAPHHDGQVPTI*AIQDLEADTMPADL
Trigger: AAGATCGGCTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTGTCCGTCATGATGGGGAGCTCCTACGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGGAGCTGTGGATTCTTaGGGAAGTTCAGTGGAAGCT +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGGAVDS*GSSVEA
Trigger: AGCTTCCACTGAACTTCCCAAAGAATCCACAGCTCC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCATGAAAGGATTCCCTaGGCTCAAGATCTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGHERIP*AQDLLA
Trigger: AGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGACCTTGGGCCTGAATTaGTGCCACATGGGTGCCTGT +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVTLGLN*CHMGAC
Trigger: ACAGGCACCCATGTGGCACAAATTCAGGCCCAAGGT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGTTTTACTGGTCGGCTaGGCTGGACAATGCGCTGAA +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPVLLVG*AGQCAE
Trigger: TTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAAC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTCCGGACTGTGGCTGTaGAAGGACCAAAGTGATGCG +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVSGLWL*KDQSDA
Trigger: CGCATCACTTTGGTCCTTCAACAGCCACAGTCCGGA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCCGGACTGTGGCTGTaGAAGGACCAAAGTGATGCG +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSGLWL*KDQSDA
Trigger: CGCATCACTTTGGTCCTTCAACAGCCACAGTCCGGA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCCCTGTAACACTATCTaGCCTGGTAGACTCCCTAAC +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEPCNTI*PGRLPN
Trigger: GTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGGG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGAGGCAGCAGCAGTCTaGCTCTTCTTTGGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVEAAAV*LFFGFS
Trigger: GGAGAAGCCAAAGAAGAGCAAGACTGCTGCTGCCTC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTGGGCTCGGGTTTTATaGGACCAGTTACATCGACCT +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGWARVL*DQLHRP
Trigger: AGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGATTTCTTCCAGGCATTaGCCTGTGGACGATTCACCC +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEISSRH*PVDDSP
Trigger: GGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAAT...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGCAGCTTGTCGAAGGTaGCCTCTAACTCGCCCATCA +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVAACRR*PLTRPS
Trigger: TGATGGGCGAGTTAGAGGCAACCTTCGACAAGCTGC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACGGTCTGAGTCAGGCTaGCTAAAGCGGTCGATAGCA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRSESG*LKRSIA
Trigger: TGCTATCGACCGCTTTAGCAAGCCTGACTCAGACCG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCCAATGAGCAGGGATTaGTCAGCCTCACTATCCCAC +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPPMSRD*SASLSH
Trigger: GTGGGATAGTGAGGCTGACAAATCCCTGCTCATTGG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTCGGTAGAAATCAGTTaGCTCACGCCTTGTCCACCG +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPSVEIS*LTPCPP
Trigger: CGGTGGACAAGGCGTGAGCAAACTGATTTCTACCGA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp GTCCTCCAGTATTACTGGGGGAGACACCTGTGGCAGAGACACCCATaGAAGGATTCCCTTGGCTCAAGATCTCCTGGCTCTTGGAGACCT +
Preference number: 5 (lower is better)
Translates to: VLQYYWGRHLWQRHP*KDSLGSRSPGSWRP
Trigger: AGGTCTCCAAGAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGGTGTCTCCCCCAGTAATACTGGAGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp AAGGAAGAGTCTCGCCATCAGGCTCTTGCACTGGTTCTGGGAGGATaGGCTCGGGTTTTATTGGACCAGTTACATCGACCTCCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: KEESRHQALALVLGG*ARVLLDQLHRPPPP
Trigger: AGGAGGAGGAGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp CTGCATGGAAGGAAGAGTCTCGCCATCAGGCTCTTGCACTGGTTCTaGGAGGATGGGCTCGGGTTTTATTGGACCAGTTACATCGACCTC +
Preference number: 5 (lower is better)
Translates to: LHGRKSLAIRLLHWF*EDGLGFYWTSYIDL
Trigger: GAGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp AGAAAGGTCTGGTCTTGTCCTACGGACCCGTTTCTTGCTGTTCTCTaGTGCAACAGGCCCTGGCAAAACCCGGTTGAACGCAGTTTCAGC +
Preference number: 5 (lower is better)
Translates to: RKVWSCPTDPFLAVL*CNRPWQNPVERSFS
Trigger: GCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACAAGACCAGACCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CCA 90 bp CCCAGTGCTTCCACCCTGCATCAGGGCCATCATCTTAGAAAGGTCTaGTCTTGTCCTACGGACCCGTTTCTTGCTGTTCTCTGGTGCAAC +
Preference number: 5 (lower is better)
Translates to: PSASTLHQGHHLRKV*SCPTDPFLAVLWCN
Trigger: GTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACAAGACCAGACCTTTCTAAGATGATGGCCCTGATGCAGGGTGGAAGCACTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGGAGTCCAGAGAGCTaGGCAGTCCAAGTGCTTCTT +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVRSPES*AVQVLL
Trigger: AAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCCT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCGAGGAACCAGGTCACTaGCTGATGAATTCCCCACAT +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPEEPGH*LMNSPH
Trigger: ATGTGGGGAATTCATCAGCAAGTGACCTGGTTCCTC...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTGTACTGGTGATACCTaGGGCCTGAATTTGTGCCAC +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPCTGDT*GLNLCH
Trigger: GTGGCACAAATTCAGGCCCAAGGTATCACCAGTACA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCCCCTGTAACACTATCTaGCCTGGTAGACTCCCTAAC +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPPCNTI*PGRLPN
Trigger: GTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGGG...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTATGAGGGGCACAGCTaGCTGGGGATGACAGGGCTG +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYYEGHS*LGMTGL
Trigger: CAGCCCTGTCATCCCCAGCAAGCTGTGCCCCTCATA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGTGTTTAGCTTACTCTaGCCCTTCGTTTTGGAGGCA +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAVFSLL*PFVLEA
Trigger: TGCCTCCAAAACGAAGGGCAAGAGTAAGCTAAACAC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTGTTTAGCTTACTCTaGCCCTTCGTTTTGGAGGCA +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVFSLL*PFVLEA
Trigger: TGCCTCCAAAACGAAGGGCAAGAGTAAGCTAAACAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGTTACGCTTTCTCTTCTaGCCCACTACAGGAGTGATG +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLRFLF*PTTGVM
Trigger: CATCACTCCTGTAGTGGGCAAGAAGAGAAAGCGTAA...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTCCAGGTCCATGTGCTaGAGACTATCAAGTAGCTTG +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASRSMC*RLSSSL
Trigger: CAAGCTACTTGATAGTCTCAAGCACATGGACCTGGA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCGGATGGCACGGCATATaGTCTCAACATCTCTTTCAG +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAGWHGI*SQHLFQ
Trigger: CTGAAAGAGATGTTGAGACAATATGCCGTGCCATCC...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAGCCTCCATCTTCATTaGTTCTCTCTTGTAGCTGCG +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGSLHLH*FSLVAA
Trigger: CGCAGCTACAAGAGAGAACAAATGAAGATGGAGGCT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCGCCTTGCGATTTCTTaGAGCTTAAAGGCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNERLAIS*SLKAAS
Trigger: TGAAGCAGCCTTTAAGCTCAAAGAAATCGCAAGGCG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGTACCATCCACCTTATaGATGACAGGGATCCGGGTC +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVVPSTL*MTGIRV
Trigger: GACCCGGATCCCTGTCATCAATAAGGTGGATGGTAC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACTACGGACCCGTTTCTaGCTGTTCTCTGGTGCAACA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPLRTRF*LFSGAT
Trigger: TGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATCACTGGAGTCTGAGTaGGCTGGCATCATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSLESE*AGIIGS
Trigger: TGACCCTATGATGCCAGCCAACTCAGACTCCAGTGA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp AACACAACATGCCGATGTCCTTGGGGACCTCCGGACTGTGGCTGTTaGAGGACCAAAGTGATGCGTTTCGATTCACCCTGGGTAGGTGTA +
Preference number: 5 (lower is better)
Translates to: NTTCRCPWGPPDCGC*RTKVMRFDSPWVGV
Trigger: TACACCTACCCAGGGTGAATCGAAACGCATCACTTTGGTCCTTCAACAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TATAATTCATACGGGCAGCCAGAAAAGAGAAGTCTGGGTCCTGCATaGTGTTGCAGTCTGTTTGGCTCACCCCATGGCGGGCTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: YNSYGQPEKRSLGPA*CCSLFGSPHGGLLL
Trigger: GAGGAGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp TGGCTTGAGTCAAGGCTGCTAGCTGGTTGCCCTGTAACACTATCTTaGCTGGTAGACTCCCTAACACAACATGCCGATGTCCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: WLESRLLAGCPVTLS*LVDSLTQHADVLGD
Trigger: GTCCCCAAGGACATCGGCATGTTGTGTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGGGCAACCAGCTAGCAGCCTTGACTCAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp GCTGCCCCTGGGCATTCTTGGCTTGAGTCAAGGCTGCTAGCTGGTTaGCCTGTAACACTATCTTGCCTGGTAGACTCCCTAACACAACAT +
Preference number: 5 (lower is better)
Translates to: AAPGHSWLESRLLAG*PVTLSCLVDSLTQH
Trigger: ATGTTGTGTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGGGCAACCAGCTAGCAGCCTTGACTCAAGCCAAGAATGCCCAGGGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp CCACAATCCGATTTGCTTTCTCTTGCTTTTTCTGGTGCTCCAACCTaGGGTTCTCCTCCATCCCAGTCTTCCCTGCAGTATGAGGGGCAC +
Preference number: 5 (lower is better)
Translates to: PQSDLLSLAFSGAPT*GSPPSQSSLQYEGH
Trigger: GTGCCCCTCATACTGCAGGGAAGACTGGGATGGAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp TATCCAACACTCTATGTTCTGCTGCGATGGCTTTGTCATCTGGCCTaGCAGCCTTTTCTAGGAAGCACAAGGCAGGGTCTGCCCTCATGG +
Preference number: 5 (lower is better)
Translates to: YPTLYVLLRWLCHLA*QPFLGSTRQGLPSW
Trigger: CCATGAGGGCAGACCCTGCCTTGTGCTTCCTAGAAAAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAGTGTTGGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp AAGGTCTGGTCTTGTCCTACGGACCCGTTTCTTGCTGTTCTCTGGTaGAACAGGCCCTGGCAAAACCCGGTTGAACGCAGTTTCAGCATA +
Preference number: 5 (lower is better)
Translates to: KVWSCPTDPFLAVLW*NRPWQNPVERSFSI
Trigger: TATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACAAGACCAGACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS GCA 90 bp GTGGTGGTGATGATGAAGCATGGTGCTGGAGTCTACATGAGGGGGTaGTGCTGCACCCATCACAAACGGCATAAAAGGCAGAGATGCAGA +
Preference number: 5 (lower is better)
Translates to: VVVMMKHGAGVYMRG*CCTHHKRHKRQRCR
Trigger: TCTGCATCTCTGCCTTTTATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCATCATCACCACCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp TTGGTGTTGATGTCTGCAAGACAGGCTGGGCTGGCTGCTCCTGGCTaGTGGGCTGAGTGGTATAATCATGCAAGGTTAAGGATTCTGGAG +
Preference number: 5 (lower is better)
Translates to: LVLMSARQAGLAAPG*WAEWYNHARLRILE
Trigger: CTCCAGAATCCTTAACCTTGCATGATTATACCACTCAGCCCACCAGCCAGGAGCAGCCAGCCCAGCCTGTCTTGCAGACATCAACACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp GTGGCAGAGACACCCATGAAAGGATTCCCTTGGCTCAAGATCTCCTaGCTCTTGGAGACCTGCAAGAGTCCTGCTGTTGGTGTTGATGTC +
Preference number: 5 (lower is better)
Translates to: VAETPMKGFPWLKIS*LLETCKSPAVGVDV
Trigger: GACATCAACACCAACAGCAGGACTCTTGCAGGTCTCCAAGAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp GCAATGGCCTCTGCCACAATCCGATTTGCTTTCTCTTGCTTTTTCTaGTGCTCCAACCTGCGGTTCTCCTCCATCCCAGTCTTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: AMASATIRFAFSCFF*CSNLRFSSIPVFPA
Trigger: TGCAGGGAAGACTGGGATGGAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGGAGCTGTGGATTCTTaGGGAAGTTCAGTGGAAGCT +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPGAVDS*GSSVEA
Trigger: AGCTTCCACTGAACTTCCCAAAGAATCCACAGCTCC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTACGCTTTCTCTTCTaGCCCACTACAGGAGTGATG +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPLRFLF*PTTGVM
Trigger: CATCACTCCTGTAGTGGGCAAGAAGAGAAAGCGTAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGTTCAGCCTCAGTGTATaGTCCAGAAGGAAGCTCTTT +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEFSLSV*SRRKLF
Trigger: AAAGAGCTTCCTTCTGGACAATACACTGAGGCTGAA...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGATTTCTTCCAGGCATTaGCCTGTGGACGATTCACCC +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVISSRH*PVDDSP
Trigger: GGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAAT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCTGCAGGTGGAAATCTaGAGGTATAATATGGCAAGC +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLQVEI*RYNMAS
Trigger: GCTTGCCATATTATACCTCAAGATTTCCACCTGCAG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGCAACAAAGCTTGCCTaGGCAAAAGTAGAACCTTTC +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGATKLA*AKVEPF
Trigger: GAAAGGTTCTACTTTTGCCAAGGCAAGCTTTGTTGC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTCCCAAATGAAGCTTTaGATGTTTTCATCCCCACGG +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASQMKL*MFSSPR
Trigger: CCGTGGGGATGAAAACATCAAAAGCTTCATTTGGGA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGAACAGAGTATCAGGGTaGTATTTCCGGATCCAGTCT +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGNRVSG*YFRIQS
Trigger: AGACTGGATCCGGAAATACAACCCTGATACTCTGTT...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCATTTGGGAATCCATCTaGGGACATAGTAAGGGACAG +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAIWESI*GHSKGQ
Trigger: CTGTCCCTTACTATGTCCCAAGATGGATTCCCAAAT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGCAACTCAGGGGTCATTaGTTCTCCATCTTCATTTGG +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEQLRGH*FSIFIW
Trigger: CCAAATGAAGATGGAGAACAAATGACCCCTGAGTTG...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp ATGCCCTGGCTGTTGAGTTACCTGGGCTTCCTCTCCGTCGATGACTaGGATCTCCTCATCCATCATCATCAAGGGATCACCCTCATCATC +
Preference number: 5 (lower is better)
Translates to: MPWLLSYLGFLSVDD*DLLIHHHQGITLII
Trigger: GATGATGAGGGTGATCCCTTGATGATGATGGATGAGGAGATCTCAGTCATCGACGGAGAGGAAGCCCAGGTAACTCAACAGCCAGGGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp ATGGCCTCTGCCACAATCCGATTTGCTTTCTCTTGCTTTTTCTGGTaGTCCAACCTGCGGTTCTCCTCCATCCCAGTCTTCCCTGCAGTA +
Preference number: 5 (lower is better)
Translates to: MASATIRFAFSCFFW*SNLRFSSIPVFPAV
Trigger: TACTGCAGGGAAGACTGGGATGGAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp TCCACAAAGAACTGCATGGAAGGAAGAGTCTCGCCATCAGGCTCTTaGACTGGTTCTGGGAGGATGGGCTCGGGTTTTATTGGACCAGTT +
Preference number: 5 (lower is better)
Translates to: STKNCMEGRVSPSGS*TGSGRMGSGFIGPV
Trigger: AACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATGCAGTTCTTTGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp GTGATGATGAAGCATGGTGCTGGAGTCTACATGAGGGGGTGCTGCTaGACCCATCACAAACGGCATAAAAGGCAGAGATGCAGAAGTGGT +
Preference number: 5 (lower is better)
Translates to: VMMKHGAGVYMRGCC*THHKRHKRQRCRSG
Trigger: ACCACTTCTGCATCTCTGCCTTTTATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCATCATCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp GTGGTGATGATGAAGCATGGTGCTGGAGTCTACATGAGGGGGTGCTaGTGCACCCATCACAAACGGCATAAAAGGCAGAGATGCAGAAGT +
Preference number: 5 (lower is better)
Translates to: VVMMKHGAGVYMRGC*CTHHKRHKRQRCRS
Trigger: ACTTCTGCATCTCTGCCTTTTATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCATCATCACCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp TGTCCTACGGACCCGTTTCTTGCTGTTCTCTGGTGCAACAGGCCCTaGCAAAACCCGGTTGAACGCAGTTTCAGCATAGTGACCCTTTTT +
Preference number: 5 (lower is better)
Translates to: CPTDPFLAVLWCNRP*QNPVERSFSIVTLF
Trigger: AAAAAGGGTCACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCCAGGCCAAATAAGTTaGGGTCATCAAAAAGATCCA +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGPGQIS*GHQKDP
Trigger: TGGATCTTTTTGATGACCCAAACTTATTTGGCCTGG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCTTCTTCAATGGGGTCTaGAGTGACCTGATTAAAGCT +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSAFFNGV*SDLIKA
Trigger: AGCTTTAATCAGGTCACTCAAGACCCCATTGAAGAA...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAACCTTGGGCCTGAATTaGTGCCACATGGGTGCCTGT +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTTLGLN*CHMGAC
Trigger: ACAGGCACCCATGTGGCACAAATTCAGGCCCAAGGT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGTACCAGTCAGCACTTaGGTAAAAGTGACTTTTCCA +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGVPVST*VKVTFP
Trigger: TGGAAAAGTCACTTTTACCAAAGTGCTGACTGGTAC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTCTTGCCCTTCGTTTaGGAGGCAGCAGCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLLPFV*EAAAVL
Trigger: CAAGACTGCTGCTGCCTCCAAAACGAAGGGCAAGAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACGCATGGAAAGCACTTaGTCCACAATAGCTGCATCT +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPRMEST*STIAAS
Trigger: AGATGCAGCTATTGTGGACAAAGTGCTTTCCATGCG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCGCATGGAAAGCACTTaGTCCACAATAGCTGCATCT +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVRMEST*STIAAS
Trigger: AGATGCAGCTATTGTGGACAAAGTGCTTTCCATGCG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGAGCCTCCATCTTCATTaGTTCTCTCTTGTAGCTGCG +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVSLHLH*FSLVAA
Trigger: CGCAGCTACAAGAGAGAACAAATGAAGATGGAGGCT...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp GCTGATGAATTCCCCACATCACCACCTCCACCATCTTGGTTCATCTaGTCCAAGGAGTCCAGAGAGCTTGGCAGTCCAAGTGCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: ADEFPTSPPPPSWFI*SKESRELGSPSASS
Trigger: TGAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCCTTGGATCAGATGAACCAAGATGGTGGAGGTGGTGATGTGGGGAATTCATCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp ACCTTATTGATGACAGGGATCCGGGTCTCCAGGTCCAGATCAAGGTaGTTAGGCTCTTCCATGCACTCCACCTCCAGCTCTACTAGCTTT +
Preference number: 5 (lower is better)
Translates to: TLLMTGIRVSRSRSR*LGSSMHSTSSSTSF
Trigger: AAAGCTAGTAGAGCTGGAGGTGGAGTGCATGGAAGAGCCTAATCACCTTGATCTGGACCTGGAGACCCGGATCCCTGTCATCAATAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp TGGTACTGCTGTGACCCAGAGACGACACAGACTGTAGGTTACTACTaGTGTGTTGAAAGGTGTTATGCAGAGACAGGGACCCAGTGCTTC +
Preference number: 5 (lower is better)
Translates to: WYCCDPETTQTVGYY*CVERCYAETGTQCF
Trigger: GAAGCACTGGGTCCCTGTCTCTGCATAACACCTTTCAACACAGCAGTAGTAACCTACAGTCTGTGTCGTCTCTGGGTCACAGCAGTACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp AAAGAACTGCATGGAAGGAAGAGTCTCGCCATCAGGCTCTTGCACTaGTTCTGGGAGGATGGGCTCGGGTTTTATTGGACCAGTTACATC +
Preference number: 5 (lower is better)
Translates to: KELHGRKSLAIRLLH*FWEDGLGFYWTSYI
Trigger: GATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATGCAGTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTCTTCAATGGGGTCTaGAGTGACCTGATTAAAGCT +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFFNGV*SDLIKA
Trigger: AGCTTTAATCAGGTCACTCAAGACCCCATTGAAGAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGCTGCAGGTGGAAATCTaGAGGTATAATATGGCAAGC +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLQVEI*RYNMAS
Trigger: GCTTGCCATATTATACCTCAAGATTTCCACCTGCAG...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGGAGGGGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGATTCTGCAATTCTTTaGTCTTGCCATTTTCAGCAG +
Preference number: 5 (lower is better)
Translates to: GRGEHTSCSKLLCFPRNEDSAIL*SCHFQQ
Trigger: CTGCTGAAAATGGCAAGACAAAAGAATTGCAGAATC...CTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGGATTCTGCAATTCTTTaGTCTTGCCATTTTCAGCAG +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGDSAIL*SCHFQQ
Trigger: CTGCTGAAAATGGCAAGACAAAAGAATTGCAGAATC...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TGCCAGAGGCTAGGGCCAGCGCTACATAGTCTGTGGTTAATGGAGGCGTCTGGGCTTATAACTCTCATCTaGGAACAGAGTATCAGGGTT +
Preference number: 5 (lower is better)
Translates to: CQRLGPALHSLWLMEASGLITLI*EQSIRV
Trigger: AACCCTGATACTCTGTTCCAAGATGAGAGTTATAAG...CCCAGACGCCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTCTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATCGGTAGAAATCAGTTaGCTCACGCCTTGTCCACCG +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTSVEIS*LTPCPP
Trigger: CGGTGGACAAGGCGTGAGCAAACTGATTTCTACCGA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTTCTCCATCTTCATTaGGGAATCCATCTTGGGACA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVLHLH*GIHLGT
Trigger: TGTCCCAAGATGGATTCCCAAATGAAGATGGAGAAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACAACTCAGGGGTCATTaGTTCTCCATCTTCATTTGG +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPQLRGH*FSIFIW
Trigger: CCAAATGAAGATGGAGAACAAATGACCCCTGAGTTG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGTACCATCCACCTTATaGATGACAGGGATCCGGGTC +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYVPSTL*MTGIRV
Trigger: GACCCGGATCCCTGTCATCAATAAGGTGGATGGTAC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp GGCATTTGCCTGTGGACGATTCACCCTTCTCAGTTCTGGGTGCCTTaGCTGGATCCGTTTAAATTCCCGAATCTTGCCCTCATCAACATC +
Preference number: 5 (lower is better)
Translates to: GICLWTIHPSQFWVP*LDPFKFPNLALINI
Trigger: GATGTTGATGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAGAAGGGTGAATCGTCCACAGGCAAATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp TTCCAGGCATTTGCCTGTGGACGATTCACCCTTCTCAGTTCTGGGTaGCTTGACTGGATCCGTTTAAATTCCCGAATCTTGCCCTCATCA +
Preference number: 5 (lower is better)
Translates to: FQAFACGRFTLLSSG*LDWIRLNSRILPSS
Trigger: TGATGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAGAAGGGTGAATCGTCCACAGGCAAATGCCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp ATCAGTTTGCTCACGCCTTGTCCACCGTTGTTGTTTTTCCCGCCTTaGGATTTCTTTGAGCTTAAAGGCTGCTTCACATCGTCGGCGTCT +
Preference number: 5 (lower is better)
Translates to: ISLLTPCPPLLFFPP*DFFELKGCFTSSAS
Trigger: AGACGCCGACGATGTGAAGCAGCCTTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAACAACGGTGGACAAGGCGTGAGCAAACTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp ACCTCCACCATCTTGGTTCATCTGATCCAAGGAGTCCAGAGAGCTTaGCAGTCCAAGTGCTTCTTCAATGGGGTCTTGAGTGACCTGATT +
Preference number: 5 (lower is better)
Translates to: TSTILVHLIQGVQRA*QSKCFFNGVLSDLI
Trigger: AATCAGGTCACTCAAGACCCCATTGAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCCTTGGATCAGATGAACCAAGATGGTGGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp TTAAGGATTCTGGAGCTGGAGCTGTGGATTCTTTGGGAAGTTCAGTaGAAGCTGTTTCCTCTGGTGGAGGAACCAGGTCACTTGCTGATG +
Preference number: 5 (lower is better)
Translates to: LRILELELWILWEVQ*KLFPLVEEPGHLLM
Trigger: CATCAGCAAGTGACCTGGTTCCTCCACCAGAGGAAACAGCTTCCACTGAACTTCCCAAAGAATCCACAGCTCCAGCTCCAGAATCCTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp CTACCAGGTCGGAGAAATTATCCAACACTCTATGTTCTGCTGCGATaGCTTTGTCATCTGGCCTGCCAGCCTTTTCTAGGAAGCACAAGG +
Preference number: 5 (lower is better)
Translates to: LPGRRNYPTLYVLLR*LCHLACQPFLGSTR
Trigger: CCTTGTGCTTCCTAGAAAAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAGTGTTGGATAATTTCTCCGACCTGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp ATGGTTCTGCATATAATTCATACGGGCAGCCAGAAAAGAGAAGTCTaGGTCCTGCATGATGTTGCAGTCTGTTTGGCTCACCCCATGGCG +
Preference number: 5 (lower is better)
Translates to: MVLHIIHTGSQKREV*VLHDVAVCLAHPMA
Trigger: CGCCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATATGCAGAACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCACCAGGCCAAATAAGTTaGGGTCATCAAAAAGATCCA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPPGQIS*GHQKDP
Trigger: TGGATCTTTTTGATGACCCAAACTTATTTGGCCTGG...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGAGGAACCAGGTCACTaGCTGATGAATTCCCCACAT +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYEEPGH*LMNSPH
Trigger: ATGTGGGGAATTCATCAGCAAGTGACCTGGTTCCTC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACATGAAAGGATTCCCTaGGCTCAAGATCTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTHERIP*AQDLLA
Trigger: AGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGTACTGGTGATACCTaGGGCCTGAATTTGTGCCAC +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYCTGDT*GLNLCH
Trigger: GTGGCACAAATTCAGGCCCAAGGTATCACCAGTACA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAGTACCAGTCAGCACTTaGGTAAAAGTGACTTTTCCA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPVPVST*VKVTFP
Trigger: TGGAAAAGTCACTTTTACCAAAGTGCTGACTGGTAC...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAAGGCTGCTAGCTGGTaGCCCTGTAACACTATCTTG +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYKAASW*PCNTIL
Trigger: CAAGATAGTGTTACAGGGCAACCAGCTAGCAGCCTT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACTGGGCTCGGGTTTTATaGGACCAGTTACATCGACCT +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYWARVL*DQLHRP
Trigger: AGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCA...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTAAATTCCCGAATCTaGCCCTCATCAACATCCTCT +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVLNSRI*PSSTSS
Trigger: AGAGGATGTTGATGAGGGCAAGATTCGGGAATTTAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CCTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCTTTTCAACATCCTCTTaGAGTCTCCTCAGCATCATT +
Preference number: 5 (lower is better)
Translates to: PPTFPKSKGQSKGFQQPPFSTSS*SLLSII
Trigger: AATGATGCTGAGGAGACTCAAAGAGGATGTTGAAAA...GGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp ACAGTTCCTGACCCTCCAGCTGTAGCCACAGTTTGGCCAGGAACAGGCTCTGCCAGCTTTGGAAGTAACTaGTCAATGAGAACTAACTTG +
Preference number: 5 (lower is better)
Translates to: TVPDPPAVATVWPGTGSASFGSN*SMRTNL
Trigger: CAAGTTAGTTCTCATTGACAAGTTACTTCCAAAGCT...GGCAGAGCCTGTTCCTGGCCAAACTGTGGCTACAGCTGGAGGGTCAGGAACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCATGCAATTCTTTTGTCTaGCCATTTTCAGCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPCNSFV*PFSAGL
Trigger: TAGCCCTGCTGAAAATGGCAAGACAAAAGAATTGCA...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGGTTACTACTGCTGTGTaGAAAGGTGTTATGCAGAGA +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVVTTAV*KGVMQR
Trigger: TCTCTGCATAACACCTTTCAACACAGCAGTAGTAAC...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp TTTGCCTGTGGACGATTCACCCTTCTCAGTTCTGGGTGCCTTGACTaGATCCGTTTAAATTCCCGAATCTTGCCCTCATCAACATCCTCT +
Preference number: 5 (lower is better)
Translates to: FACGRFTLLSSGCLD*IRLNSRILPSSTSS
Trigger: AGAGGATGTTGATGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAGAAGGGTGAATCGTCCACAGGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATCCAGGTCCATGTGCTaGAGACTATCAAGTAGCTTG +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTSRSMC*RLSSSL
Trigger: CAAGCTACTTGATAGTCTCAAGCACATGGACCTGGA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp GGTGAGCACACCAGCTGCTCTAAGCTCCTTTGCTTCCCCAGAAACGAGGAAGTGTTTTCAACATCCTCTTaGAGTCTCCTCAGCATCATT +
Preference number: 5 (lower is better)
Translates to: GEHTSCSKLLCFPRNEEVFSTSS*SLLSII
Trigger: AATGATGCTGAGGAGACTCAAAGAGGATGTTGAAAA...CACTTCCTCGTTTCTGGGGAAGCAAAGGAGCTTAGAGCAGCTGGTGTGCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGGATGGCACGGCATATaGTCTCAACATCTCTTTCAG +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYGWHGI*SQHLFQ
Trigger: CTGAAAGAGATGTTGAGACAATATGCCGTGCCATCC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACCGCCTTGCGATTTCTTaGAGCTTAAAGGCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRLAIS*SLKAAS
Trigger: TGAAGCAGCCTTTAAGCTCAAAGAAATCGCAAGGCG...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp GAGGAGTTTGGTGGAGCTTTAAGAATAACAATCTTAGGAGCTGACTaGGATGGTTGTCCTCCAGTATTACTGGGGGAGACACCTGTGGCA +
Preference number: 5 (lower is better)
Translates to: EEFGGALRITILGAD*DGCPPVLLGETPVA
Trigger: TGCCACAGGTGTCTCCCCCAGTAATACTGGAGGACAACCATCTCAGTCAGCTCCTAAGATTGTTATTCTTAAAGCTCCACCAAACTCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp GACGGAGGAGTTTGGTGGAGCTTTAAGAATAACAATCTTAGGAGCTaGCTGAGATGGTTGTCCTCCAGTATTACTGGGGGAGACACCTGT +
Preference number: 5 (lower is better)
Translates to: DGGVWWSFKNNNLRS*LRWLSSSITGGDTC
Trigger: ACAGGTGTCTCCCCCAGTAATACTGGAGGACAACCATCTCAGTCAGCTCCTAAGATTGTTATTCTTAAAGCTCCACCAAACTCCTCCGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp TTGGTTCATCTGATCCAAGGAGTCCAGAGAGCTTGGCAGTCCAAGTaGTTCTTCAATGGGGTCTTGAGTGACCTGATTAAAGCTGTCATC +
Preference number: 5 (lower is better)
Translates to: LVHLIQGVQRAWQSK*FFNGVLSDLIKAVI
Trigger: GATGACAGCTTTAATCAGGTCACTCAAGACCCCATTGAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCCTTGGATCAGATGAACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp GAGTGGTATAATCATGCAAGGTTAAGGATTCTGGAGCTGGAGCTGTaGATTCTTTGGGAAGTTCAGTGGAAGCTGTTTCCTCTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: EWYNHARLRILELEL*ILWEVQWKLFPLVE
Trigger: CTCCACCAGAGGAAACAGCTTCCACTGAACTTCCCAAAGAATCCACAGCTCCAGCTCCAGAATCCTTAACCTTGCATGATTATACCACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp GACCTTCGTGGCCAACACTGTATTACCAGAGACAATGGATACACCTaGTCGAAGGGGTGTACCAGTCAGCACTTTGGTAAAAGTGACTTT +
Preference number: 5 (lower is better)
Translates to: DLRGQHCITRDNGYT*SKGCTSQHFGKSDF
Trigger: AAAGTCACTTTTACCAAAGTGCTGACTGGTACACCCCTTCGACCAGGTGTATCCATTGTCTCTGGTAATACAGTGTTGGCCACGAAGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATTCAGCCTCAGTGTATaGTCCAGAAGGAAGCTCTTT +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTFSLSV*SRRKLF
Trigger: AAAGAGCTTCCTTCTGGACAATACACTGAGGCTGAA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp CTCCCACATTTCCAAAGTCCAAGGGCCAGAGTAAGGGATTCCAGCAGCCACCCAAGCTTTGGAAGTAACTaGTCAATGAGAACTAACTTG +
Preference number: 5 (lower is better)
Translates to: LPHFQSPRARVRDSSSHPSFGSN*SMRTNL
Trigger: CAAGTTAGTTCTCATTGACAAGTTACTTCCAAAGCT...TGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGCAACAAAGCTTGCCTaGGCAAAAGTAGAACCTTTC +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTATKLA*AKVEPF
Trigger: GAAAGGTTCTACTTTTGCCAAGGCAAGCTTTGTTGC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAATTTGGGAATCCATCTaGGGACATAGTAAGGGACAG +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTIWESI*GHSKGQ
Trigger: CTGTCCCTTACTATGTCCCAAGATGGATTCCCAAAT...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACGTTCTCCATCTTCATTaGGGAATCCATCTTGGGACA +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYVLHLH*GIHLGT
Trigger: TGTCCCAAGATGGATTCCCAAATGAAGATGGAGAAC...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACACTGTCTAATAAATGGTaGCCTGGCCCCAAAATTCCT +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTLSNKW*PGPKIP
Trigger: AGGAATTTTGGGGCCAGGCAACCATTTATTAGACAG...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGACTATCAAGTAGCTaGCAATTACGGTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: FRSSPAHPILSKLGAIGYRLSSS*QLRFFS
Trigger: GCTGAAGAACCGTAATTGCAAGCTACTTGATAGTCT...GTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACATGCAATTCTTTTGTCTaGCCATTTTCAGCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTCNSFV*PFSAGL
Trigger: TAGCCCTGCTGAAAATGGCAAGACAAAAGAATTGCA...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS-3UTR CAA 90 bp TTAGGAGTTCCCCTGCCCACCCAATCCTCTCAAAATTGGGAGCAATTGGGTACAGTTACTACTGCTGTGTaGAAAGGTGTTATGCAGAGA +
Preference number: 5 (lower is better)
Translates to: LGVPLPTQSSQNWEQLGTVTTAV*KGVMQR
Trigger: TCTCTGCATAACACCTTTCAACACAGCAGTAGTAAC...TGTACCCAATTGCTCCCAATTTTGAGAGGATTGGGTGGGCAGGGGAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp ACTAACTTGCCAGCTGACCGAACCATAGCCTGCAGGTGGAAATCTTaGGGTATAATATGGCAAGCTTCCCGAAATTCCATCAGGATTTTC +
Preference number: 5 (lower is better)
Translates to: TNLPADRTIACRWKS*GIIWQASRNSIRIF
Trigger: GAAAATCCTGATGGAATTTCGGGAAGCTTGCCATATTATACCTCAAGATTTCCACCTGCAGGCTATGGTTCGGTCAGCTGGCAAGTTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp CCTTCAGACTCAATAGTGATGGTTGTGGTCCGTCTCAGTAAGATCTaGTCTATGTCCTCCTCACAAAACTTAGAACCCTCATCGTCTTCC +
Preference number: 5 (lower is better)
Translates to: PSDSIVMVVVRLSKI*SMSSSQNLEPSSSS
Trigger: GGAAGACGATGAGGGTTCTAAGTTTTGTGAGGAGGACATAGATCAGATCTTACTGAGACGGACCACAACCATCACTATTGAGTCTGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp TGTAACGGTGTCCCTGTGAGTAACACTTTATGCTCCAGGTCCATGTaGTTGAGACTATCAAGTAGCTTGCAATTACGGTTCTTCAGCCTA +
Preference number: 5 (lower is better)
Translates to: CNGVPVSNTLCSRSM*LRLSSSLQLRFFSL
Trigger: TAGGCTGAAGAACCGTAATTGCAAGCTACTTGATAGTCTCAAGCACATGGACCTGGAGCATAAAGTGTTACTCACAGGGACACCGTTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 90 bp ATCAGAACACGATCCTTAGGCCATTCAGAGGCTCTTTGTCTTTCCTaGAGTAGCAGCAACTCAGGGGTCATTTGTTCTCCATCTTCATTT +
Preference number: 5 (lower is better)
Translates to: IRTRSLGHSEALCLS*SSSNSGVICSPSSF
Trigger: AAATGAAGATGGAGAACAAATGACCCCTGAGTTGCTGCTACTGCAGGAAAGACAAAGAGCCTCTGAATGGCCTAAGGATCGTGTTCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp ATCATCAAGGGATCACCCTCATCATCTGGGTCCTTTGGAGGACCCTaGAGGGGTTTATATTCAGGATCTTCACAATCCTTATCAAAGTCA +
Preference number: 5 (lower is better)
Translates to: IIKGSPSSSGSFGGP*RGLYSGSSQSLSKS
Trigger: TGACTTTGATAAGGATTGTGAAGATCCTGAATATAAACCCCTCCAGGGTCCTCCAAAGGACCCAGATGATGAGGGTGATCCCTTGATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 90 bp AGATCGTTGCCCACTCACAGTGCAGATAAGAGTAGTTCTTGTACTTaGCGAAGAATTCTTCAGCCTCAGTGTATTGTCCAGAAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: RSLPTHSADKSSSCT*RRILQPQCIVQKEA
Trigger: AGCTTCCTTCTGGACAATACACTGAGGCTGAAGAATTCTTCGTCAAGTACAAGAACTACTCTTATCTGCACTGTGAGTGGGCAACGATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TCCACCTCCAGCTCTACTAGCTTTTTCCTGTTCCCCTTCTTCTTATaGAACAGTGGATGTCCATCTCCCATTACACCATTAGCCATCAAT +
Preference number: 5 (lower is better)
Translates to: STSSSTSFFLFPFFL*NSGCPSPITPLAIN
Trigger: ATTGATGGCTAATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACAGGAAAAAGCTAGTAGAGCTGGAGGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 90 bp AACACTGTGAGACTCGTCCAGTATCCTATCCACCTCTACGTAGTCTaGATTGAAAGGCTCTTCATCTTCATGAAAGAAGTGTCTCATCTG +
Preference number: 5 (lower is better)
Translates to: NTVRLVQYPIHLYVV*IERLFIFMKEVSHL
Trigger: CAGATGAGACACTTCTTTCATGAAGATGAAGAGCCTTTCAATCCAGACTACGTAGAGGTGGATAGGATACTGGACGAGTCTCACAGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 90 bp CGCAGTTTCAGCATAGTGACCCTTTTTCCCATTTCTAGAGTTCGCTaGCTGTACTGGTTCCATTCCCAAACAGTTCAATTCTGCCTTATT +
Preference number: 5 (lower is better)
Translates to: RSFSIVTLFPISRVR*LYWFHSQTVQFCLI
Trigger: AATAAGGCAGAATTGAACTGTTTGGGAATGGAACCAGTACAGCCAGCGAACTCTAGAAATGGGAAAAAGGGTCACTATGCTGAAACTGCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS TCA 90 bp TTTCCAAATCAGAAAACTCAACCAGGTCATCATCTTTCAAAGTGCTaGAGTGTCGAGTCTGTTTCCGAACTCGAGGTGTGTCGATCACTA +
Preference number: 5 (lower is better)
Translates to: FPNQKTQPGHHLSKC*SVESVSELEVCRSL
Trigger: TAGTGATCGACACACCTCGAGTTCGGAAACAGACTCGACACTTCAGCACTTTGAAAGATGATGACCTGGTTGAGTTTTCTGATTTGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 90 bp TCCTCTACGGTATTTTGTAACGGTGTCCCTGTGAGTAACACTTTATaGTCCAGGTCCATGTGCTTGAGACTATCAAGTAGCTTGCAATTA +
Preference number: 5 (lower is better)
Translates to: SSTVFCNGVPVSNTL*SRSMCLRLSSSLQL
Trigger: TAATTGCAAGCTACTTGATAGTCTCAAGCACATGGACCTGGAGCATAAAGTGTTACTCACAGGGACACCGTTACAAAATACCGTAGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 90 bp TCCTCCATATACTCTACTAGCTTTTTCCTGTTCCCCTTCTTCTTATaGAACAGTGGATGTCCATCTCCCATTACACCATTAGCCATCAAT +
Preference number: 5 (lower is better)
Translates to: SSIYSTSFFLFPFFL*NSGCPSPITPLAIN
Trigger: ATTGATGGCTAATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACAGGAAAAAGCTAGTAGAGTATATGGAGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227897.2
CDS TCA 72 bp CTGCGGTTCTCCTCCATCCCAGTCTTCCCTGCAGTATaGGGGGCACAGCTTGCTGGGGATGACAGGGCTGCC +
Preference number: 6 (lower is better)
Translates to: LRFSSIPVFPAV*GAQLAGDDRAA
Trigger: GGCAGCCCTGTCATCCCCAGCAAGCTGTGCCCCTCATACTGCAGGGAAGACTGGGATGGAGGAGAACCGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CTCTTCCTCCGCCATGGAAGCTGCACTGCCACTTCGTaGCGTGGGGACTGGAGAGTCCCCATCTTCTCCTGG +
Preference number: 6 (lower is better)
Translates to: LFLRHGSCTATS*RGDWRVPIFSW
Trigger: CCAGGAGAAGATGGGGACTCTCCAGTCCCCACGCCACGAAGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp CGATTCACCCTGGGTAGGTGTAGACGTCAGTGTAACTaGAGGCTTCAGTGGGGGCCCGGCAGCCCCAGGATT +
Preference number: 6 (lower is better)
Translates to: RFTLGRCRRQCN*RLQWGPGSPRI
Trigger: AATCCTGGGGCTGCCGGGCCCCCACTGAAGCCTGCAGTTACACTGACGTCTACACCTACCCAGGGTGAATCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp GGCAGCTCATCCTCATTCAGGACTCGAGGTATGTTTTaGTCGCCCCTGGCCCGGGCCCTAGCAATGGCCTCT +
Preference number: 6 (lower is better)
Translates to: GSSSSFRTRGMF*SPLARALAMAS
Trigger: AGAGGCCATTGCTAGGGCCCGGGCCAGGGGCGAGCAAAACATACCTCGAGTCCTGAATGAGGATGAGCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp CGCAGGGGTGATGGTGAAGCAGTACGTGAGGTACACTaGTGGTGCAGCAGTGGAGTGGAGCATCGCGACAGG +
Preference number: 6 (lower is better)
Translates to: RRGDGEAVREVH*WCSSGVEHRDR
Trigger: CCTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTCACGTACTGCTTCACCATCACCCCTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp AGGCAGCTCATCCTCATTCAGGACTCGAGGTATGTTTaGCTCGCCCCTGGCCCGGGCCCTAGCAATGGCCTC +
Preference number: 6 (lower is better)
Translates to: RQLILIQDSRYV*LAPGPGPSNGL
Trigger: GAGGCCATTGCTAGGGCCCGGGCCAGGGGCGAGCAAAACATACCTCGAGTCCTGAATGAGGATGAGCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp CCGGACACTAGGCAGCTCATCCTCATTCAGGACTCGAGGTATGTTTaGCTCGCCCCTGGCCCGGGCCCTAGCAATGGCCTCTGCCACAAT +
Preference number: 6 (lower is better)
Translates to: PDTRQLILIQDSRYV*LAPGPGPSNGLCHN
Trigger: ATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGCGAGCAAAACATACCTCGAGTCCTGAATGAGGATGAGCTGCCTAGTGTCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp AGCTGTTTTACTGGTCGGCTTGGCTGGACAATGCGCTaGACAGCAGCCTGGTTCCCAGGGACCTTCGTGGCC +
Preference number: 6 (lower is better)
Translates to: SCFTGRLGWTMR*TAAWFPGTFVA
Trigger: GGCCACGAAGGTCCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp GAGACCTGCAAGAGTCCTGCTGTTGGTGTTGATGTCTaGAAGACAGGCTGGGCTGGCTGCTCCTGGCTGGTG +
Preference number: 6 (lower is better)
Translates to: ETCKSPAVGVDV*KTGWAGCSWLV
Trigger: CACCAGCCAGGAGCAGCCAGCCCAGCCTGTCTTGCAGACATCAACACCAACAGCAGGACTCTTGCAGGTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp GGACCAGCTGTTTTACTGGTCGGCTTGGCTGGACAATaGGCTGAACAGCAGCCTGGTTCCCAGGGACCTTCG +
Preference number: 6 (lower is better)
Translates to: GPAVLLVGLAGQ*AEQQPGSQGPS
Trigger: CGAAGGTCCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp TTTCGTAAACTGGGCCGCCGCTGTGGTGACTGCAGATaGCTCTTCCTCCGCCATGGAAGCTGCACTGCCACT +
Preference number: 6 (lower is better)
Translates to: FRKLGRRCGDCR*LFLRHGSCTAT
Trigger: AGTGGCAGTGCAGCTTCCATGGCGGAGGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCCAGTTTACGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp CCGAAGTTTCGTAAACTGGGCCGCCGCTGTGGTGACTaGAGATGCCTCTTCCTCCGCCATGGAAGCTGCACT +
Preference number: 6 (lower is better)
Translates to: PKFRKLGRRCGD*RCLFLRHGSCT
Trigger: AGTGCAGCTTCCATGGCGGAGGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCCAGTTTACGAAACTTCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 90 bp CTGAACCCTTTACTGGCTGGAGGACCAGCTGTTTTACTGGTCGGCTaGGCTGGACAATGCGCTGAACAGCAGCCTGGTTCCCAGGGACCT +
Preference number: 6 (lower is better)
Translates to: LNPLLAGGPAVLLVG*AGQCAEQQPGSQGP
Trigger: AGGTCCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCCTCCAGCCAGTAAAGGGTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp CTGCAGCACCATCTTGAGCGGTACAGAAAGTCTCTGCCCTGGGTTTaGGCCTGGCCCCATTATCTGAGCCTGCTGCACAGAGGACAGGGT +
Preference number: 6 (lower is better)
Translates to: LQHHLERYRKSLPWV*AWPHYLSLLHRGQG
Trigger: ACCCTGTCCTCTGTGCAGCAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCTGTACCGCTCAAGATGGTGCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp TGGCTGTCCCAGCCACTAGGGGCTGAGCTGTACTGGTaGTACCTTGGGCCTGAATTTGTGCCACATGGGTGC +
Preference number: 6 (lower is better)
Translates to: WLSQPLGAELYW*YLGPEFVPHGC
Trigger: GCACCCATGTGGCACAAATTCAGGCCCAAGGTATCACCAGTACAGCTCAGCCCCTAGTGGCTGGGACAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp CCTGAGAAGAGCCAGCCTGTGGCTGCAGCACCATCTTaGGCGGTACAGAAAGTCTCTGCCCTGGGTTTTGGC +
Preference number: 6 (lower is better)
Translates to: PEKSQPVAAAPS*AVQKVSALGFG
Trigger: GCCAAAACCCAGGGCAGAGACTTTCTGTACCGCTCAAGATGGTGCTGCAGCCACAGGCTGGCTCTTCTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp CCATGGCGGGCTGCTCCTCGTAGGAGCTCCCCATCATaGCGGACAGGTTCCCACCATTTGGGCAATTCAAGA +
Preference number: 6 (lower is better)
Translates to: PWRAAPRRSSPS*RTGSHHLGNSR
Trigger: TCTTGAATTGCCCAAATGGTGGGAACCTGTCCGTCATGATGGGGAGCTCCTACGAGGAGCAGCCCGCCATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp GGTGATGGTGAAGCAGTACGTGAGGTACACTGCTGGTaGAGCAGTGGAGTGGAGCATCGCGACAGGGATGCA +
Preference number: 6 (lower is better)
Translates to: GDGEAVREVHCW*SSGVEHRDRDA
Trigger: TGCATCCCTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTCACGTACTGCTTCACCATCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp TACTGGCTGGAGGACCAGCTGTTTTACTGGTCGGCTTaGCTGGACAATGCGCTGAACAGCAGCCTGGTTCCC +
Preference number: 6 (lower is better)
Translates to: YWLEDQLFYWSA*LDNALNSSLVP
Trigger: GGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCCTCCAGCCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp GAACAGATTAGGGTCTGGAGGTTCATCACCAGCAGCTaGGGGAAGGCGGCACACTTGTCGACACATGGCCAC +
Preference number: 6 (lower is better)
Translates to: EQIRVWRFITSS*GKAAHLSTHGH
Trigger: GTGGCCATGTGTCGACAAGTGTGCCGCCTTCCCCCAGCTGCTGGTGATGAACCTCCAGACCCTAATCTGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp AGGGGTGATGGTGAAGCAGTACGTGAGGTACACTGCTaGTGCAGCAGTGGAGTGGAGCATCGCGACAGGGAT +
Preference number: 6 (lower is better)
Translates to: RGDGEAVREVHC*CSSGVEHRDRD
Trigger: ATCCCTGTCGCGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTCACGTACTGCTTCACCATCACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 90 bp ACTGGGGGAGACACCTGTGGCAGAGACACCCATGAAAGGATTCCCTaGGCTCAAGATCTCCTGGCTCTTGGAGACCTGCAAGAGTCCTGC +
Preference number: 6 (lower is better)
Translates to: TGGDTCGRDTHERIP*AQDLLALGDLQESC
Trigger: GCAGGACTCTTGCAGGTCTCCAAGAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGGTGTCTCCCCCAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp TTCATACGGGCAGCCAGAAAAGAGAAGTCTGGGTCCTGCATGATGTaGCAGTCTGTTTGGCTCACCCCATGGCGGGCTGCTCCTCGTAGG +
Preference number: 6 (lower is better)
Translates to: FIRAARKEKSGSCMM*QSVWLTPWRAAPRR
Trigger: CCTACGAGGAGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp TGCCGATGTCCTTGGGGACCTCCGGACTGTGGCTGTTaGAGGACCAAAGTGATGCGTTTCGATTCACCCTGG +
Preference number: 6 (lower is better)
Translates to: CRCPWGPPDCGC*RTKVMRFDSPW
Trigger: CCAGGGTGAATCGAAACGCATCACTTTGGTCCTTCAACAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp TTGCTCGCCCCTGGCCCGGGCCCTAGCAATGGCCTCTaGCACAATCCGATTTGCTTTCTCTTGCTTTTTCTG +
Preference number: 6 (lower is better)
Translates to: LLAPGPGPSNGL*HNPICFLLLFL
Trigger: CAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGCGAGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CAGCACCATCTTGAGCGGTACAGAAAGTCTCTGCCCTaGGTTTTGGCCTGGCCCCATTATCTGAGCCTGCTG +
Preference number: 6 (lower is better)
Translates to: QHHLERYRKSLP*VLAWPHYLSLL
Trigger: CAGCAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCTGTACCGCTCAAGATGGTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp TCTTTCTCATCCATGCCTCGCCGAAGTTTCGTAAACTaGGCCGCCGCTGTGGTGACTGCAGATGCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: SFSSMPRRSFVN*AAAVVTADASS
Trigger: GGAAGAGGCATCTGCAGTCACCACAGCGGCGGCCCAGTTTACGAAACTTCGGCGAGGCATGGATGAGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp TGGTCTTGTCCTACGGACCCGTTTCTTGCTGTTCTCTaGTGCAACAGGCCCTGGCAAAACCCGGTTGAACGC +
Preference number: 6 (lower is better)
Translates to: WSCPTDPFLAVL*CNRPWQNPVER
Trigger: GCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACAAGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CAA 72 bp GGGCTGAGCTGTACTGGTGATACCTTGGGCCTGAATTaGTGCCACATGGGTGCCTGTGACGGAGGAGTTTGG +
Preference number: 6 (lower is better)
Translates to: GLSCTGDTLGLN*CHMGACDGGVW
Trigger: CCAAACTCCTCCGTCACAGGCACCCATGTGGCACAAATTCAGGCCCAAGGTATCACCAGTACAGCTCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp TTACTGGCTGGAGGACCAGCTGTTTTACTGGTCGGCTaGGCTGGACAATGCGCTGAACAGCAGCCTGGTTCC +
Preference number: 6 (lower is better)
Translates to: LLAGGPAVLLVG*AGQCAEQQPGS
Trigger: GGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAACAGCTGGTCCTCCAGCCAGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp GCAGCCAGAAAAGAGAAGTCTGGGTCCTGCATGATGTaGCAGTCTGTTTGGCTCACCCCATGGCGGGCTGCT +
Preference number: 6 (lower is better)
Translates to: AARKEKSGSCMM*QSVWLTPWRAA
Trigger: AGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 90 bp CCGGGCCCTAGCAATGGCCTCTGCCACAATCCGATTTGCTTTCTCTaGCTTTTTCTGGTGCTCCAACCTGCGGTTCTCCTCCATCCCAGT +
Preference number: 6 (lower is better)
Translates to: PGPSNGLCHNPICFL*LFLVLQPAVLLHPS
Trigger: ACTGGGATGGAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGGGCCCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp ACTACTTTGGCAGGCTGCCCCTGGGCATTCTTGGCTTaGGTCAAGGCTGCTAGCTGGTTGCCCTGTAACACT +
Preference number: 6 (lower is better)
Translates to: TTLAGCPWAFLA*VKAASWLPCNT
Trigger: AGTGTTACAGGGCAACCAGCTAGCAGCCTTGACTCAAGCCAAGAATGCCCAGGGGCAGCCTGCCAAAGTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp ATGACAGGGATCCGGGTCTCCAGGTCCAGATCAAGGTaGTTAGGCTCTTCCATGCACTCCACCTCCAGCTCT +
Preference number: 6 (lower is better)
Translates to: MTGIRVSRSRSR*LGSSMHSTSSS
Trigger: AGAGCTGGAGGTGGAGTGCATGGAAGAGCCTAATCACCTTGATCTGGACCTGGAGACCCGGATCCCTGTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp TACGCTAGAAATCGGGGATCAACAGCAAACTCTGGATaGCCCTGTAACCACATCTCCAGCTCCGCCCGGCGA +
Preference number: 6 (lower is better)
Translates to: YARNRGSTANSG*PCNHISSSARR
Trigger: TCGCCGGGCGGAGCTGGAGATGTGGTTACAGGGTCATCCAGAGTTTGCTGTTGATCCCCGATTTCTAGCGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp CTGAGCTGTACTGGTGATACCTTGGGCCTGAATTTGTaGCACATGGGTGCCTGTGACGGAGGAGTTTGGTGG +
Preference number: 6 (lower is better)
Translates to: LSCTGDTLGLNL*HMGACDGGVWW
Trigger: CCACCAAACTCCTCCGTCACAGGCACCCATGTGGCACAAATTCAGGCCCAAGGTATCACCAGTACAGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp CCGGGCCCTAGCAATGGCCTCTGCCACAATCCGATTTaGTTTCTCTTGCTTTTTCTGGTGCTCCAACCTGCG +
Preference number: 6 (lower is better)
Translates to: PGPSNGLCHNPI*FLLLFLVLQPA
Trigger: CGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGGGCCCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp ATACCAGGAGATGCTTTTCTACCCGGAAGCAGTCAGTaGGCCCATAGGTGTGATGCCGGTCATGTCTTCGGG +
Preference number: 6 (lower is better)
Translates to: IPGDAFLPGSSQ*AHRCDAGHVFG
Trigger: CCCGAAGACATGACCGGCATCACACCTATGGGCGCACTGACTGCTTCCGGGTAGAAAAGCATCTCCTGGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp CATGGAAGGAAGAGTCTCGCCATCAGGCTCTTGCACTaGTTCTGGGAGGATGGGCTCGGGTTTTATTGGACC +
Preference number: 6 (lower is better)
Translates to: HGRKSLAIRLLH*FWEDGLGFYWT
Trigger: GGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp GGAGCTCCCCATCATGACGGACAGGTTCCCACCATTTaGGCAATTCAAGACCTGGAGGCTGACACAATGCCA +
Preference number: 6 (lower is better)
Translates to: GAPHHDGQVPTI*AIQDLEADTMP
Trigger: TGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTGTCCGTCATGATGGGGAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp ATGCCGATGTCCTTGGGGACCTCCGGACTGTGGCTGTaGAAGGACCAAAGTGATGCGTTTCGATTCACCCTG +
Preference number: 6 (lower is better)
Translates to: MPMSLGTSGLWL*KDQSDAFRFTL
Trigger: CAGGGTGAATCGAAACGCATCACTTTGGTCCTTCAACAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp CATCTTGAGCGGTACAGAAAGTCTCTGCCCTGGGTTTaGGCCTGGCCCCATTATCTGAGCCTGCTGCACAGA +
Preference number: 6 (lower is better)
Translates to: HLERYRKSLPWV*AWPHYLSLLHR
Trigger: TCTGTGCAGCAGGCTCAGATAATGGGGCCAGGCCAAAACCCAGGGCAGAGACTTTCTGTACCGCTCAAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp CTTCTGGATGCTGCTCTCTTCGTCCTCCCGGGGCGATaGTGCAGGCATAACTTCCACGTCAGAGTTGTCAGA +
Preference number: 6 (lower is better)
Translates to: LLDAALFVLPGR*CRHNFHVRVVR
Trigger: TCTGACAACTCTGACGTGGAAGTTATGCCTGCACAATCGCCCCGGGAGGACGAAGAGAGCAGCATCCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp TCACGCCTTGTCCACCGTTGTTGTTTTTCCCGCCTTGCGATTTCTTaGAGCTTAAAGGCTGCTTCACATCGTCGGCGTCTCCGGTCCCCA +
Preference number: 6 (lower is better)
Translates to: SRLVHRCCFSRLAIS*SLKAASHRRRLRSP
Trigger: TGGGGACCGGAGACGCCGACGATGTGAAGCAGCCTTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAACAACGGTGGACAAGGCGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp GGTTCCCACCATTTGGGCAATTCAAGACCTGGAGGCTaGCACAATGCCAGCCGATCTTCTAAAAGGGGGTGG +
Preference number: 6 (lower is better)
Translates to: GSHHLGNSRPGG*HNASRSSKRGW
Trigger: CCACCCCCTTTTAGAAGATCGGCTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp CAGCAGTGGAGTGGAGCATCGCGACAGGGATGCAGCTaGTGCTCCCGCCTGATGGTTCTGCATATAATTCAT +
Preference number: 6 (lower is better)
Translates to: QQWSGASRQGCS*CSRLMVLHIIH
Trigger: ATGAATTATATGCAGAACCATCAGGCGGGAGCATCAGCTGCATCCCTGTCGCGATGCTCCACTCCACTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp AACACTATCTTGCCTGGTAGACTCCCTAACACAACATaGCGATGTCCTTGGGGACCTCCGGACTGTGGCTGT +
Preference number: 6 (lower is better)
Translates to: NTILPGRLPNTT*RCPWGPPDCGC
Trigger: ACAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTTGTGTTAGGGAGTCTACCAGGCAAGATAGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp CTCTATGTTCTGCTGCGATGGCTTTGTCATCTGGCCTaGCAGCCTTTTCTAGGAAGCACAAGGCAGGGTCTG +
Preference number: 6 (lower is better)
Translates to: LYVLLRWLCHLA*QPFLGSTRQGL
Trigger: CAGACCCTGCCTTGTGCTTCCTAGAAAAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp TTTTTCCCGCCTTGCGATTTCTTTGAGCTTAAAGGCTaGTTCACATCGTCGGCGTCTCCGGTCCCCACGTTC +
Preference number: 6 (lower is better)
Translates to: FFPPCDFFELKG*FTSSASPVPTF
Trigger: GAACGTGGGGACCGGAGACGCCGACGATGTGAAGCAGCCTTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp AAGCATGGTGCTGGAGTCTACATGAGGGGGTGCTGCTaGACCCATCACAAACGGCATAAAAGGCAGAGATGC +
Preference number: 6 (lower is better)
Translates to: KHGAGVYMRGCC*THHKRHKRQRC
Trigger: GCATCTCTGCCTTTTATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CACAACATGCCGATGTCCTTGGGGACCTCCGGACTGTaGCTGTTGAAGGACCAAAGTGATGCGTTTCGATTC +
Preference number: 6 (lower is better)
Translates to: HNMPMSLGTSGL*LLKDQSDAFRF
Trigger: GAATCGAAACGCATCACTTTGGTCCTTCAACAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp TCTCGCCATCAGGCTCTTGCACTGGTTCTGGGAGGATaGGCTCGGGTTTTATTGGACCAGTTACATCGACCT +
Preference number: 6 (lower is better)
Translates to: SRHQALALVLGG*ARVLLDQLHRP
Trigger: AGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp AGGAAGAGTCTCGCCATCAGGCTCTTGCACTGGTTCTaGGAGGATGGGCTCGGGTTTTATTGGACCAGTTAC +
Preference number: 6 (lower is better)
Translates to: RKSLAIRLLHWF*EDGLGFYWTSY
Trigger: GTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp GACCCGTTTCTTGCTGTTCTCTGGTGCAACAGGCCCTaGCAAAACCCGGTTGAACGCAGTTTCAGCATAGTG +
Preference number: 6 (lower is better)
Translates to: DPFLAVLWCNRP*QNPVERSFSIV
Trigger: CACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CAA 72 bp GAACTGCATGGAAGGAAGAGTCTCGCCATCAGGCTCTaGCACTGGTTCTGGGAGGATGGGCTCGGGTTTTAT +
Preference number: 6 (lower is better)
Translates to: ELHGRKSLAIRL*HWFWEDGLGFY
Trigger: ATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATGCAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp TCGTCCTCCCGGGGCGATTGTGCAGGCATAACTTCCACGTCAGAGTaGTCAGACGATGTGTTACGCTTTCTCTTCTTGCCCACTACAGGA +
Preference number: 6 (lower is better)
Translates to: SSSRGDCAGITSTSE*SDDVLRFLFLPTTG
Trigger: TCCTGTAGTGGGCAAGAAGAGAAAGCGTAACACATCGTCTGACAACTCTGACGTGGAAGTTATGCCTGCACAATCGCCCCGGGAGGACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp CTCCACAAAGAACTGCATGGAAGGAAGAGTCTCGCCATCAGGCTCTaGCACTGGTTCTGGGAGGATGGGCTCGGGTTTTATTGGACCAGT +
Preference number: 6 (lower is better)
Translates to: LHKELHGRKSLAIRL*HWFWEDGLGFYWTS
Trigger: ACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATGCAGTTCTTTGTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp GCCATCATCTTAGAAAGGTCTGGTCTTGTCCTACGGACCCGTTTCTaGCTGTTCTCTGGTGCAACAGGCCCTGGCAAAACCCGGTTGAAC +
Preference number: 6 (lower is better)
Translates to: AIILERSGLVLRTRF*LFSGATGPGKTRLN
Trigger: GTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACAAGACCAGACCTTTCTAAGATGATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS TCA 72 bp TATTACTGGGGGAGACACCTGTGGCAGAGACACCCATaGAAGGATTCCCTTGGCTCAAGATCTCCTGGCTCT +
Preference number: 6 (lower is better)
Translates to: YYWGRHLWQRHP*KDSLGSRSPGS
Trigger: AGAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGGTGTCTCCCCCAGTAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp TTGTCCAGGCGAGCAAAAGTGCGGAAGCGATCCCAGTaGAACTGCATGTTGTCAGGGTCATACTCCACACCA +
Preference number: 6 (lower is better)
Translates to: LSRRAKVRKRSQ*NCMLSGSYSTP
Trigger: TGGTGTGGAGTATGACCCTGACAACATGCAGTTTCACTGGGATCGCTTCCGCACTTTTGCTCGCCTGGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp AACTGCATGGAAGGAAGAGTCTCGCCATCAGGCTCTTaGACTGGTTCTGGGAGGATGGGCTCGGGTTTTATT +
Preference number: 6 (lower is better)
Translates to: NCMEGRVSPSGS*TGSGRMGSGFI
Trigger: AATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATGGCGAGACTCTTCCTTCCATGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp TTCATACGGGCAGCCAGAAAAGAGAAGTCTGGGTCCTaGATGATGTTGCAGTCTGTTTGGCTCACCCCATGG +
Preference number: 6 (lower is better)
Translates to: FIRAARKEKSGS*MMLQSVWLTPW
Trigger: CCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp GTGTTATGCAGAGACAGGGACCCAGTGCTTCCACCCTaGATCAGGGCCATCATCTTAGAAAGGTCTGGTCTT +
Preference number: 6 (lower is better)
Translates to: VLCRDRDPVLPP*IRAIILERSGL
Trigger: AAGACCAGACCTTTCTAAGATGATGGCCCTGATGCAGGGTGGAAGCACTGGGTCCCTGTCTCTGCATAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS GCA 72 bp TGCTGCACCCATCACAAACGGCATAAAAGGCAGAGATaGAGAAGTGGTACTGCTGTGACCCAGAGACGACAC +
Preference number: 6 (lower is better)
Translates to: CCTHHKRHKRQR*RSGTAVTQRRH
Trigger: GTGTCGTCTCTGGGTCACAGCAGTACCACTTCTGCATCTCTGCCTTTTATGCCGTTTGTGATGGGTGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp ATGAAGCATGGTGCTGGAGTCTACATGAGGGGGTGCTaGTGCACCCATCACAAACGGCATAAAAGGCAGAGA +
Preference number: 6 (lower is better)
Translates to: MKHGAGVYMRGC*CTHHKRHKRQR
Trigger: TCTCTGCCTTTTATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp ATGATGAAGCATGGTGCTGGAGTCTACATGAGGGGGTaGTGCTGCACCCATCACAAACGGCATAAAAGGCAG +
Preference number: 6 (lower is better)
Translates to: MMKHGAGVYMRG*CCTHHKRHKRQ
Trigger: CTGCCTTTTATGCCGTTTGTGATGGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCATCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp ACACCCATGAAAGGATTCCCTTGGCTCAAGATCTCCTaGCTCTTGGAGACCTGCAAGAGTCCTGCTGTTGGT +
Preference number: 6 (lower is better)
Translates to: TPMKGFPWLKIS*LLETCKSPAVG
Trigger: ACCAACAGCAGGACTCTTGCAGGTCTCCAAGAGCCAGGAGATCTTGAGCCAAGGGAATCCTTTCATGGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp TTGCACTGGTTCTGGGAGGATGGGCTCGGGTTTTATTaGACCAGTTACATCGACCTCCTCCTCCTCTTCATC +
Preference number: 6 (lower is better)
Translates to: LHWFWEDGLGFY*TSYIDLLLLFI
Trigger: GATGAAGAGGAGGAGGAGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CCACCAAGTTGTAGGAACCTCCAGCTGATCCACCACTaGGAACCATATGTCAATCTCACTGGCTATGGCACC +
Preference number: 6 (lower is better)
Translates to: PPSCRNLQLIHH*EPYVNLTGYGT
Trigger: GGTGCCATAGCCAGTGAGATTGACATATGGTTCCCAGTGGTGGATCAGCTGGAGGTTCCTACAACTTGGTGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp TGGAAGCTGTTTCCTCTGGTGGAGGAACCAGGTCACTaGCTGATGAATTCCCCACATCACCACCTCCACCAT +
Preference number: 6 (lower is better)
Translates to: WKLFPLVEEPGH*LMNSPHHHLHH
Trigger: ATGGTGGAGGTGGTGATGTGGGGAATTCATCAGCAAGTGACCTGGTTCCTCCACCAGAGGAAACAGCTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp CGGGGCGATTGTGCAGGCATAACTTCCACGTCAGAGTaGTCAGACGATGTGTTACGCTTTCTCTTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: RGDCAGITSTSE*SDDVLRFLFLP
Trigger: GGGCAAGAAGAGAAAGCGTAACACATCGTCTGACAACTCTGACGTGGAAGTTATGCCTGCACAATCGCCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp CTTGCACTGGTTCTGGGAGGATGGGCTCGGGTTTTATaGGACCAGTTACATCGACCTCCTCCTCCTCTTCAT +
Preference number: 6 (lower is better)
Translates to: LALVLGGWARVL*DQLHRPPPPLH
Trigger: ATGAAGAGGAGGAGGAGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp TCTCCGGTCCCCACGTTCCGCAGCCTCCATCTTCATTaGTTCTCTCTTGTAGCTGCGTTGATAGGCTGTTAC +
Preference number: 6 (lower is better)
Translates to: SPVPTFRSLHLH*FSLVAALIGCY
Trigger: GTAACAGCCTATCAACGCAGCTACAAGAGAGAACAAATGAAGATGGAGGCTGCGGAACGTGGGGACCGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp TTAGAAAGGTCTGGTCTTGTCCTACGGACCCGTTTCTaGCTGTTCTCTGGTGCAACAGGCCCTGGCAAAACC +
Preference number: 6 (lower is better)
Translates to: LERSGLVLRTRF*LFSGATGPGKT
Trigger: GGTTTTGCCAGGGCCTGTTGCACCAGAGAACAGCAAGAAACGGGTCCGTAGGACAAGACCAGACCTTTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CAA 90 bp CATCAGGCTCTTGCACTGGTTCTGGGAGGATGGGCTCGGGTTTTATaGGACCAGTTACATCGACCTCCTCCTCCTCTTCATCGTCTGTTA +
Preference number: 6 (lower is better)
Translates to: HQALALVLGGWARVL*DQLHRPPPPLHRLL
Trigger: TAACAGACGATGAAGAGGAGGAGGAGGTCGATGTAACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCAAGAGCCTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp GAAGTTCAGTGGAAGCTGTTTCCTCTGGTGGAGGAACCAGGTCACTaGCTGATGAATTCCCCACATCACCACCTCCACCATCTTGGTTCA +
Preference number: 6 (lower is better)
Translates to: EVQWKLFPLVEEPGH*LMNSPHHHLHHLGS
Trigger: TGAACCAAGATGGTGGAGGTGGTGATGTGGGGAATTCATCAGCAAGTGACCTGGTTCCTCCACCAGAGGAAACAGCTTCCACTGAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp AGGTCGGAGAAATTATCCAACACTCTATGTTCTGCTGCGATGGCTTaGTCATCTGGCCTGCCAGCCTTTTCTAGGAAGCACAAGGCAGGG +
Preference number: 6 (lower is better)
Translates to: RSEKLSNTLCSAAMA*SSGLPAFSRKHKAG
Trigger: CCCTGCCTTGTGCTTCCTAGAAAAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAGTGTTGGATAATTTCTCCGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp CTGTGGACGATTCACCCTTCTCAGTTCTGGGTGCCTTaGCTGGATCCGTTTAAATTCCCGAATCTTGCCCTC +
Preference number: 6 (lower is better)
Translates to: LWTIHPSQFWVP*LDPFKFPNLAL
Trigger: GAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAGAAGGGTGAATCGTCCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp GCCTCACTATCCCACCAAGTTGTAGGAACCTCCAGCTaGTCCACCACTGGGAACCATATGTCAATCTCACTG +
Preference number: 6 (lower is better)
Translates to: ASLSHQVVGTSS*STTGNHMSISL
Trigger: CAGTGAGATTGACATATGGTTCCCAGTGGTGGATCAGCTGGAGGTTCCTACAACTTGGTGGGATAGTGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp CTGTTGAGTTACCTGGGCTTCCTCTCCGTCGATGACTaGGATCTCCTCATCCATCATCATCAAGGGATCACC +
Preference number: 6 (lower is better)
Translates to: LLSYLGFLSVDD*DLLIHHHQGIT
Trigger: GGTGATCCCTTGATGATGATGGATGAGGAGATCTCAGTCATCGACGGAGAGGAAGCCCAGGTAACTCAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp TGTTCTCTGGTGCAACAGGCCCTGGCAAAACCCGGTTaGACGCAGTTTCAGCATAGTGACCCTTTTTCCCAT +
Preference number: 6 (lower is better)
Translates to: CSLVQQALAKPG*TQFQHSDPFSH
Trigger: ATGGGAAAAAGGGTCACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTGTTGCACCAGAGAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS GCA 72 bp TCAAGGCTGCTAGCTGGTTGCCCTGTAACACTATCTTaGCTGGTAGACTCCCTAACACAACATGCCGATGTC +
Preference number: 6 (lower is better)
Translates to: SRLLAGCPVTLS*LVDSLTQHADV
Trigger: GACATCGGCATGTTGTGTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGGGCAACCAGCTAGCAGCCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp GCCACAATCCGATTTGCTTTCTCTTGCTTTTTCTGGTaGTCCAACCTGCGGTTCTCCTCCATCCCAGTCTTC +
Preference number: 6 (lower is better)
Translates to: ATIRFAFSCFFW*SNLRFSSIPVF
Trigger: GAAGACTGGGATGGAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp GTCAAGGCTGCTAGCTGGTTGCCCTGTAACACTATCTaGCCTGGTAGACTCCCTAACACAACATGCCGATGT +
Preference number: 6 (lower is better)
Translates to: VKAASWLPCNTI*PGRLPNTTCRC
Trigger: ACATCGGCATGTTGTGTTAGGGAGTCTACCAGGCAAGATAGTGTTACAGGGCAACCAGCTAGCAGCCTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp AGCAATGGCCTCTGCCACAATCCGATTTGCTTTCTCTaGCTTTTTCTGGTGCTCCAACCTGCGGTTCTCCTC +
Preference number: 6 (lower is better)
Translates to: SNGLCHNPICFL*LFLVLQPAVLL
Trigger: GAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATCGGATTGTGGCAGAGGCCATTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp TTGCCCACTACAGGAGTGATGGTGTTTAGCTTACTCTaGCCCTTCGTTTTGGAGGCAGCAGCAGTCTTGCTC +
Preference number: 6 (lower is better)
Translates to: LPTTGVMVFSLL*PFVLEAAAVLL
Trigger: GAGCAAGACTGCTGCTGCCTCCAAAACGAAGGGCAAGAGTAAGCTAAACACCATCACTCCTGTAGTGGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp GATTTGCTTTCTCTTGCTTTTTCTGGTGCTCCAACCTaGGGTTCTCCTCCATCCCAGTCTTCCCTGCAGTAT +
Preference number: 6 (lower is better)
Translates to: DLLSLAFSGAPT*GSPPSQSSLQY
Trigger: ATACTGCAGGGAAGACTGGGATGGAGGAGAACCGCAGGTTGGAGCACCAGAAAAAGCAAGAGAAAGCAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp TACCAGGTCGGAGAAATTATCCAACACTCTATGTTCTaGTGCGATGGCTTTGTCATCTGGCCTGCCAGCCTT +
Preference number: 6 (lower is better)
Translates to: YQVGEIIQHSMF*CDGFVIWPASL
Trigger: AAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAGTGTTGGATAATTTCTCCGACCTGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp CGATCCTTAGGCCATTCAGAGGCTCTTTGTCTTTCCTaGAGTAGCAGCAACTCAGGGGTCATTTGTTCTCCA +
Preference number: 6 (lower is better)
Translates to: RSLGHSEALCLS*SSSNSGVICSP
Trigger: TGGAGAACAAATGACCCCTGAGTTGCTGCTACTGCAGGAAAGACAAAGAGCCTCTGAATGGCCTAAGGATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp TGTGACCCAGAGACGACACAGACTGTAGGTTACTACTaGTGTGTTGAAAGGTGTTATGCAGAGACAGGGACC +
Preference number: 6 (lower is better)
Translates to: CDPETTQTVGYY*CVERCYAETGT
Trigger: GGTCCCTGTCTCTGCATAACACCTTTCAACACAGCAGTAGTAACCTACAGTCTGTGTCGTCTCTGGGTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CCA 72 bp GGACGATTCACCCTTCTCAGTTCTGGGTGCCTTGACTaGATCCGTTTAAATTCCCGAATCTTGCCCTCATCA +
Preference number: 6 (lower is better)
Translates to: GRFTLLSSGCLD*IRLNSRILPSS
Trigger: TGATGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAGAAGGGTGAATCGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp CATCTTGGTTCATCTGATCCAAGGAGTCCAGAGAGCTaGGCAGTCCAAGTGCTTCTTCAATGGGGTCTTGAG +
Preference number: 6 (lower is better)
Translates to: HLGSSDPRSPES*AVQVLLQWGLE
Trigger: CTCAAGACCCCATTGAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCCTTGGATCAGATGAACCAAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp CTCAGTTCTGGGTGCCTTGACTGGATCCGTTTAAATTCCCGAATCTaGCCCTCATCAACATCCTCTTTTAGCTCCCACGTACTGTCCTCA +
Preference number: 6 (lower is better)
Translates to: LSSGCLDWIRLNSRI*PSSTSSFSSHVLSS
Trigger: TGAGGACAGTACGTGGGAGCTAAAAGAGGATGTTGATGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp AGAGACGACACAGACTGTAGGTTACTACTGCTGTGTTaGAAGGTGTTATGCAGAGACAGGGACCCAGTGCTT +
Preference number: 6 (lower is better)
Translates to: RDDTDCRLLLLC*KVLCRDRDPVL
Trigger: AAGCACTGGGTCCCTGTCTCTGCATAACACCTTTCAACACAGCAGTAGTAACCTACAGTCTGTGTCGTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS GCA 72 bp CTGATCCAAGGAGTCCAGAGAGCTTGGCAGTCCAAGTaGTTCTTCAATGGGGTCTTGAGTGACCTGATTAAA +
Preference number: 6 (lower is better)
Translates to: LIQGVQRAWQSK*FFNGVLSDLIK
Trigger: TTTAATCAGGTCACTCAAGACCCCATTGAAGAAGCACTTGGACTGCCAAGCTCTCTGGACTCCTTGGATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp GTGGATCCTCTTATCCTTCTCCAGCTGGGAGATCGTTaGCCACTCACAGTGCAGATAAGAGTAGTTCTTGTA +
Preference number: 6 (lower is better)
Translates to: VDPLILLQLGDR*PLTVQIRVVLV
Trigger: TACAAGAACTACTCTTATCTGCACTGTGAGTGGGCAACGATCTCCCAGCTGGAGAAGGATAAGAGGATCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS GCA 72 bp TTTGCCTGTGGACGATTCACCCTTCTCAGTTCTGGGTaGCTTGACTGGATCCGTTTAAATTCCCGAATCTTG +
Preference number: 6 (lower is better)
Translates to: FACGRFTLLSSG*LDWIRLNSRIL
Trigger: CAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCCAGAACTGAGAAGGGTGAATCGTCCACAGGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp GGCCAACACTGTATTACCAGAGACAATGGATACACCTaGTCGAAGGGGTGTACCAGTCAGCACTTTGGTAAA +
Preference number: 6 (lower is better)
Translates to: GQHCITRDNGYT*SKGCTSQHFGK
Trigger: TTTACCAAAGTGCTGACTGGTACACCCCTTCGACCAGGTGTATCCATTGTCTCTGGTAATACAGTGTTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CCCATAGGTGTGATGCCGGTCATGTCTTCGGGAACGTaGCCGTTCATCATCTTCACTTTCCAAATCAGAAAA +
Preference number: 6 (lower is better)
Translates to: PIGVMPVMSSGT*PFIIFTFQIRK
Trigger: TTTTCTGATTTGGAAAGTGAAGATGATGAACGGCCACGTTCCCGAAGACATGACCGGCATCACACCTATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp CGGAGAAATTATCCAACACTCTATGTTCTGCTGCGATaGCTTTGTCATCTGGCCTGCCAGCCTTTTCTAGGA +
Preference number: 6 (lower is better)
Translates to: RRNYPTLYVLLR*LCHLACQPFLG
Trigger: TCCTAGAAAAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAGTGTTGGATAATTTCTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp GGATCACCCTCATCATCTGGGTCCTTTGGAGGACCCTaGAGGGGTTTATATTCAGGATCTTCACAATCCTTA +
Preference number: 6 (lower is better)
Translates to: GSPSSSGSFGGP*RGLYSGSSQSL
Trigger: TAAGGATTGTGAAGATCCTGAATATAAACCCCTCCAGGGTCCTCCAAAGGACCCAGATGATGAGGGTGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp GGGTGCCTTGACTGGATCCGTTTAAATTCCCGAATCTaGCCCTCATCAACATCCTCTTTTAGCTCCCACGTA +
Preference number: 6 (lower is better)
Translates to: GCLDWIRLNSRI*PSSTSSFSSHV
Trigger: TACGTGGGAGCTAAAAGAGGATGTTGATGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp ACTTCCACGTCAGAGTTGTCAGACGATGTGTTACGCTTTCTCTTCTaGCCCACTACAGGAGTGATGGTGTTTAGCTTACTCTTGCCCTTC +
Preference number: 6 (lower is better)
Translates to: TSTSELSDDVLRFLF*PTTGVMVFSLLLPF
Trigger: GAAGGGCAAGAGTAAGCTAAACACCATCACTCCTGTAGTGGGCAAGAAGAGAAAGCGTAACACATCGTCTGACAACTCTGACGTGGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 90 bp GTCATACTCCACACCAAAGGTAGATACTACTCGGTAGAAATCAGTTaGCTCACGCCTTGTCCACCGTTGTTGTTTTTCCCGCCTTGCGAT +
Preference number: 6 (lower is better)
Translates to: VILHTKGRYYSVEIS*LTPCPPLLFFPPCD
Trigger: ATCGCAAGGCGGGAAAAACAACAACGGTGGACAAGGCGTGAGCAAACTGATTTCTACCGAGTAGTATCTACCTTTGGTGTGGAGTATGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 90 bp AGATACTACTCGGTAGAAATCAGTTTGCTCACGCCTTGTCCACCGTaGTTGTTTTTCCCGCCTTGCGATTTCTTTGAGCTTAAAGGCTGC +
Preference number: 6 (lower is better)
Translates to: RYYSVEISLLTPCPP*LFFPPCDFFELKGC
Trigger: GCAGCCTTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAACAACGGTGGACAAGGCGTGAGCAAACTGATTTCTACCGAGTAGTATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp CATATAATTCATACGGGCAGCCAGAAAAGAGAAGTCTaGGTCCTGCATGATGTTGCAGTCTGTTTGGCTCAC +
Preference number: 6 (lower is better)
Translates to: HIIHTGSQKREV*VLHDVAVCLAH
Trigger: GTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp AAATTATCCAACACTCTATGTTCTGCTGCGATGGCTTaGTCATCTGGCCTGCCAGCCTTTTCTAGGAAGCAC +
Preference number: 6 (lower is better)
Translates to: KLSNTLCSAAMA*SSGLPAFSRKH
Trigger: GTGCTTCCTAGAAAAGGCTGGCAGGCCAGATGACAAAGCCATCGCAGCAGAACATAGAGTGTTGGATAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp TCGGTAGAAATCAGTTTGCTCACGCCTTGTCCACCGTaGTTGTTTTTCCCGCCTTGCGATTTCTTTGAGCTT +
Preference number: 6 (lower is better)
Translates to: SVEISLLTPCPP*LFFPPCDFFEL
Trigger: AAGCTCAAAGAAATCGCAAGGCGGGAAAAACAACAACGGTGGACAAGGCGTGAGCAAACTGATTTCTACCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp CACACCAAAGGTAGATACTACTCGGTAGAAATCAGTTaGCTCACGCCTTGTCCACCGTTGTTGTTTTTCCCG +
Preference number: 6 (lower is better)
Translates to: HTKGRYYSVEIS*LTPCPPLLFFP
Trigger: CGGGAAAAACAACAACGGTGGACAAGGCGTGAGCAAACTGATTTCTACCGAGTAGTATCTACCTTTGGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp AGGGGAACTGAGAAGGTTCCAAGAAATGCAGTAGACTaGACAGTTCCTCTACGGTATTTTGTAACGGTGTCC +
Preference number: 6 (lower is better)
Translates to: RGTEKVPRNAVD*TVPLRYFVTVS
Trigger: GGACACCGTTACAAAATACCGTAGAGGAACTGTTCAGTCTACTGCATTTCTTGGAACCTTCTCAGTTCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp CAGAAAACTCAACCAGGTCATCATCTTTCAAAGTGCTaGAGTGTCGAGTCTGTTTCCGAACTCGAGGTGTGT +
Preference number: 6 (lower is better)
Translates to: QKTQPGHHLSKC*SVESVSELEVC
Trigger: ACACACCTCGAGTTCGGAAACAGACTCGACACTTCAGCACTTTGAAAGATGATGACCTGGTTGAGTTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS GCA 72 bp GTCCCTGTGAGTAACACTTTATGCTCCAGGTCCATGTaGTTGAGACTATCAAGTAGCTTGCAATTACGGTTC +
Preference number: 6 (lower is better)
Translates to: VPVSNTLCSRSM*LRLSSSLQLRF
Trigger: GAACCGTAATTGCAAGCTACTTGATAGTCTCAAGCACATGGACCTGGAGCATAAAGTGTTACTCACAGGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp AATCATGCAAGGTTAAGGATTCTGGAGCTGGAGCTGTaGATTCTTTGGGAAGTTCAGTGGAAGCTGTTTCCT +
Preference number: 6 (lower is better)
Translates to: NHARLRILELEL*ILWEVQWKLFP
Trigger: AGGAAACAGCTTCCACTGAACTTCCCAAAGAATCCACAGCTCCAGCTCCAGAATCCTTAACCTTGCATGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CAGCAACTCAGGGGTCATTTGTTCTCCATCTTCATTTaGGAATCCATCTTGGGACATAGTAAGGGACAGAAG +
Preference number: 6 (lower is better)
Translates to: QQLRGHLFSIFI*ESILGHSKGQK
Trigger: CTTCTGTCCCTTACTATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAACAAATGACCCCTGAGTTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 72 bp TCAGAGTTGTCAGACGATGTGTTACGCTTTCTCTTCTaGCCCACTACAGGAGTGATGGTGTTTAGCTTACTC +
Preference number: 6 (lower is better)
Translates to: SELSDDVLRFLF*PTTGVMVFSLL
Trigger: GAGTAAGCTAAACACCATCACTCCTGTAGTGGGCAAGAAGAGAAAGCGTAACACATCGTCTGACAACTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp CGTCCAGTATCCTATCCACCTCTACGTAGTCTGGATTaGAAGGCTCTTCATCTTCATGAAAGAAGTGTCTCA +
Preference number: 6 (lower is better)
Translates to: RPVSYPPLRSLD*KALHLHERSVS
Trigger: TGAGACACTTCTTTCATGAAGATGAAGAGCCTTTCAATCCAGACTACGTAGAGGTGGATAGGATACTGGACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp AGACTCGTCCAGTATCCTATCCACCTCTACGTAGTCTaGATTGAAAGGCTCTTCATCTTCATGAAAGAAGTG +
Preference number: 6 (lower is better)
Translates to: RLVQYPIHLYVV*IERLFIFMKEV
Trigger: CACTTCTTTCATGAAGATGAAGAGCCTTTCAATCCAGACTACGTAGAGGTGGATAGGATACTGGACGAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp CCTCATCCTCTAACTTTAAAGTCAGACTCTCCAGATTaGGGACCTGAACAGTACTTTCCTCAGGTGACTTTT +
Preference number: 6 (lower is better)
Translates to: PHPLTLKSDSPD*GPEQYFPQVTF
Trigger: AAAAGTCACCTGAGGAAAGTACTGTTCAGGTCCCCAATCTGGAGAGTCTGACTTTAAAGTTAGAGGATGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CCA 72 bp AGCATAGTGACCCTTTTTCCCATTTCTAGAGTTCGCTaGCTGTACTGGTTCCATTCCCAAACAGTTCAATTC +
Preference number: 6 (lower is better)
Translates to: SIVTLFPISRVR*LYWFHSQTVQF
Trigger: GAATTGAACTGTTTGGGAATGGAACCAGTACAGCCAGCGAACTCTAGAAATGGGAAAAAGGGTCACTATGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CAA 72 bp CCTGTGAGTAACACTTTATGCTCCAGGTCCATGTGCTaGAGACTATCAAGTAGCTTGCAATTACGGTTCTTC +
Preference number: 6 (lower is better)
Translates to: PVSNTLCSRSMC*RLSSSLQLRFF
Trigger: GAAGAACCGTAATTGCAAGCTACTTGATAGTCTCAAGCACATGGACCTGGAGCATAAAGTGTTACTCACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp TTAAGCTTTGGAAGTAACTTGTCAATGAGAACTAACTaGCCAGCTGACCGAACCATAGCCTGCAGGTGGAAA +
Preference number: 6 (lower is better)
Translates to: LSFGSNLSMRTN*PADRTIACRWK
Trigger: TTTCCACCTGCAGGCTATGGTTCGGTCAGCTGGCAAGTTAGTTCTCATTGACAAGTTACTTCCAAAGCTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp GTAGAAATCAGTTTGCTCACGCCTTGTCCACCGTTGTaGTTTTTCCCGCCTTGCGATTTCTTTGAGCTTAAA +
Preference number: 6 (lower is better)
Translates to: VEISLLTPCPPL*FFPPCDFFELK
Trigger: TTTAAGCTCAAAGAAATCGCAAGGCGGGAAAAACAACAACGGTGGACAAGGCGTGAGCAAACTGATTTCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS CAA 90 bp AGAGTAGTTCTTGTACTTGACGAAGAATTCTTCAGCCTCAGTGTATaGTCCAGAAGGAAGCTCTTTCTTCACAACTCGCATGGAAAGCAC +
Preference number: 6 (lower is better)
Translates to: RVVLVLDEEFFSLSV*SRRKLFLHNSHGKH
Trigger: GTGCTTTCCATGCGAGTTGTGAAGAAAGAGCTTCCTTCTGGACAATACACTGAGGCTGAAGAATTCTTCGTCAAGTACAAGAACTACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp TCAATAGTGATGGTTGTGGTCCGTCTCAGTAAGATCTaGTCTATGTCCTCCTCACAAAACTTAGAACCCTCA +
Preference number: 6 (lower is better)
Translates to: SIVMVVVRLSKI*SMSSSQNLEPS
Trigger: TGAGGGTTCTAAGTTTTGTGAGGAGGACATAGATCAGATCTTACTGAGACGGACCACAACCATCACTATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CCA 72 bp ACCCTTTTTCCCATTTCTAGAGTTCGCTGGCTGTACTaGTTCCATTCCCAAACAGTTCAATTCTGCCTTATT +
Preference number: 6 (lower is better)
Translates to: TLFPISRVRWLY*FHSQTVQFCLI
Trigger: AATAAGGCAGAATTGAACTGTTTGGGAATGGAACCAGTACAGCCAGCGAACTCTAGAAATGGGAAAAAGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
ENSMUST00000227897.2
CDS CAA 72 bp CTTGTACTTGACGAAGAATTCTTCAGCCTCAGTGTATaGTCCAGAAGGAAGCTCTTTCTTCACAACTCGCAT +
Preference number: 6 (lower is better)
Translates to: LVLDEEFFSLSV*SRRKLFLHNSH
Trigger: ATGCGAGTTGTGAAGAAAGAGCTTCCTTCTGGACAATACACTGAGGCTGAAGAATTCTTCGTCAAGTACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS CAA 72 bp TATATTCATGTGATAACTCCAATTTCTTCCAGGCATTaGCCTGTGGACGATTCACCCTTCTCAGTTCTGGGT +
Preference number: 6 (lower is better)
Translates to: YIHVITPISSRH*PVDDSPFSVLG
Trigger: ACCCAGAACTGAGAAGGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAATTGGAGTTATCACATGAATATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp CCAAAATCCTTAAGGAATTCTGATTCTGAGGGGAACTaGGAAGGTTCCAAGAAATGCAGTAGACTGAACAGT +
Preference number: 6 (lower is better)
Translates to: PKSLRNSDSEGN*EGSKKCSRLNS
Trigger: ACTGTTCAGTCTACTGCATTTCTTGGAACCTTCTCAGTTCCCCTCAGAATCAGAATTCCTTAAGGATTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089752.11
ENSMUST00000200169.6
CDS TCA 72 bp AGCTCTACTAGCTTTTTCCTGTTCCCCTTCTTCTTATaGAACAGTGGATGTCCATCTCCCATTACACCATTA +
Preference number: 6 (lower is better)
Translates to: SSTSFFLFPFFL*NSGCPSPITPL
Trigger: TAATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACAGGAAAAAGCTAGTAGAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6
CDS TCA 72 bp TACTCTACTAGCTTTTTCCTGTTCCCCTTCTTCTTATaGAACAGTGGATGTCCATCTCCCATTACACCATTA +
Preference number: 6 (lower is better)
Translates to: YSTSFFLFPFFL*NSGCPSPITPL
Trigger: TAATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACAGGAAAAAGCTAGTAGAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227897.2
CDS GCA 72 bp TGTCCATCTCCCATTACACCATTAGCCATCAATCTATaGTTCTGGAATGTTAACTTCAATCCTTCTTCATCT +
Preference number: 6 (lower is better)
Translates to: CPSPITPLAINL*FWNVNFNPSSS
Trigger: AGATGAAGAAGGATTGAAGTTAACATTCCAGAAGCATAGATTGATGGCTAATGGTGTAATGGGAGATGGACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089752.11
ENSMUST00000149975.9
ENSMUST00000200169.6