Pregenerated sensors for CHCHD7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042198Ensembl transcript IDs: ENSMUST00000120732.8, ENSMUST00000121210.8, ENSMUST00000131746.2, ENSMUST00000150618.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCATCCTCAAGCACAACTAAAGGCCCCAGAGCCTTGCAGTTTGTCTaGATCAGGACCCTCCACCGAGACTCGCATCAGGCCCCAGACAGT | + |
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Preference number: 1 (lower is better) Translates to: SSSSTTKGPRALQFV*IRTLHRDSHQAPDS Trigger: ACTGTCTGGGGCCTGATGCGAGTCTCGGTGGAGGGTCCTGATGCAGACAAACTGCAAGGCTCTGGGGCCTTTAGTTGTGCTTGAGGATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR TCA 90 bp | ACAGTGGCAAGTTCAGCAGTGGTGACAACTCCTTCCCCATGTTTGTaGAACAGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: TVASSAVVTTPSPCL*NSMRGDGISFFLRS Trigger: ACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCTGTTTCACAAACATGGGGAAGGAGTTGTCACCACTGCTGAACTTGCCACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CCA 90 bp | ACTCAGAAGATAAGGTCAAAGAGTAAGTGTACCTACAGCCATCACTaGGAAACTGTGGATTACTGGTTATTCTCAGCTACGGCCACAAGC | + |
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Preference number: 1 (lower is better) Translates to: TQKIRSKSKCTYSHH*ETVDYWLFSATATS Trigger: GCTTGTGGCCGTAGCTGAGAATAACCAGTAATCCACAGTTTCCCAGTGATGGCTGTAGGTACACTTACTCTTTGACCTTATCTTCTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121210.8 |
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| 3UTR CCA 90 bp | TCTAGAAATTTTACATTTTCCTTCCTGATTTGTTCGACGATTCACTaGTCTGTTGGCTTTGATATGGATCTTCTAATTGAGCAGGTCAAT | + |
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Preference number: 1 (lower is better) Translates to: SRNFTFSFLICSTIH*SVGFDMDLLIEQVN Trigger: ATTGACCTGCTCAATTAGAAGATCCATATCAAAGCCAACAGACCAGTGAATCGTCGAACAAATCAGGAAGGAAAATGTAAAATTTCTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATGTGTCTGTCATCACTTaGCCTCACAGGCTGGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: SMRGDGISFFLRSLVQLDVSVIT*PHRLVN Trigger: GTTCACCAGCCTGTGAGGTCAAGTGATGACAGACAC...ATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR TCA 90 bp | AAATGTAACAGTGGCAAGTTCAGCAGTGGTGACAACTCCTTCCCCATGTTTGTGAAACAGCATGAGGGGTaGTGGCATCAGCTTCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: KCNSGKFSSGDNSFPMFVKQHEG*WHQLLP Trigger: AGGAAGAAGCTGATGCCATCACCCCTCATGCTGTTT...CACAAACATGGGGAAGGAGTTGTCACCACTGCTGAACTTGCCACTGTTACATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATACACTGGTCAATAATAGTTaGGTGGTCAGCCCCCAAGTA | + |
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Preference number: 2 (lower is better) Translates to: MRGDGISFFLRSLVQLDTLVNNS*VVSPQV Trigger: TACTTGGGGGCTGACCACTCAACTATTATTGACCAG...TGTATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CCA 90 bp | AGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATTTTCTGATCTTGTGTTaGTTCTGCTTGCAGCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: SMRGDGISFFLRSLVQLDFLILC*FCLQPS Trigger: GGAAGGCTGCAAGCAGAACCAACACAAGATCAGAAA...ATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CAA 90 bp | TTAAATTATCAACTGAACCAGCCCCATTCCTCACAAAGCAGGATCTaGGAGAAATGTAACAGTGGCAAGTTCAGCAGTGGTGACAACTCC | + |
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Preference number: 2 (lower is better) Translates to: LNYQLNQPHSSQSRI*EKCNSGKFSSGDNS Trigger: GGAGTTGTCACCACTGCTGAACTTGCCACTGTTACATTTCTCCAAGATCCTGCTTTGTGAGGAATGGGGCTGGTTCAGTTGATAATTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATACAGGAAAACTGAACAGCTaGACCAGATCCTTTCTGATC | + |
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Preference number: 2 (lower is better) Translates to: MRGDGISFFLRSLVQLDTGKLNS*TRSFLI Trigger: GATCAGAAAGGATCTGGTCCAGCTGTTCAGTTTTCC...TGTATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATACAATACCATCGAGGATCTaGAAAACTGAACAGCTGGAC | + |
|
Preference number: 2 (lower is better) Translates to: MRGDGISFFLRSLVQLDTIPSRI*KTEQLD Trigger: GTCCAGCTGTTCAGTTTTCCAGATCCTCGATGGTAT...TGTATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CAA 90 bp | TTCTGCTGCTGTAGGCATAGATGGCTGAACTCCATTTTGTCTTCTTaGGATCATGACAGAATTCCAGAATCGCCGGCAGTTTTTGTACTT | + |
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Preference number: 2 (lower is better) Translates to: FCCCRHRWLNSILSS*DHDRIPESPAVFVL Trigger: AAGTACAAAAACTGCCGGCGATTCTGGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCTATGCCTACAGCAGCAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131746.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTCTGCTTTACCCTAAGTaGTTGCTATGGGTCTATTTA | + |
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Preference number: 2 (lower is better) Translates to: NSMRGDGISFFLRSLVQLLLYPK*LLWVYL Trigger: TAAATAGACCCATAGCAAGCACTTAGGGTAAAGCAG...AAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR TCA 90 bp | ATGCTTTTTAAAACACTGCTTTACCCTAAGTGCTTGCTATGGGTCTATTTAAACGGACCAGATCCTTTCTaGTCTTGTGTTGGTTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: MLFKTLLYPKCLLWVYLNGPDPF*SCVGSA Trigger: AGCAGAACCAACACAAGATCAGAAAGGATCTGGTCC...GTTTAAATAGACCCATAGCAAGCACTTAGGGTAAAGCAGTGTTTTAAAAAGCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CCA 90 bp | AAACCTTGGAAAAGAATGAAACAAGCGCTCAAGGATGCCACAGAACTAAAATCCATCACTGGGAAACTGTaGATTACTGGTTATTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KPWKRMKQALKDATELKSITGKL*ITGYSQ Trigger: CTGAGAATAACCAGTAATCCACAGTTTCCCAGTGAT...GGATTTTAGTTCTGTGGCATCCTTGAGCGCTTGTTTCATTCTTTTCCAAGGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121210.8 |
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| 3UTR CAA 90 bp | TTCTGCTGCTGTAGGCATAGATGGCTGAACTCCATTTTGTCTTCTTaGGATCATGACAGAATTCTAGGAAGACTTATTGATATTAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: FCCCRHRWLNSILSS*DHDRILGRLIDIKG Trigger: ACCTTTAATATCAATAAGTCTTCCTAGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCTATGCCTACAGCAGCAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120732.8 |
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| 3UTR GCA 72 bp | AGCACAACTAAAGGCCCCAGAGCCTTGCAGTTTGTCTaGATCAGGACCCTCCACCGAGACTCGCATCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: STTKGPRALQFV*IRTLHRDSHQA Trigger: GGCCTGATGCGAGTCTCGGTGGAGGGTCCTGATGCAGACAAACTGCAAGGCTCTGGGGCCTTTAGTTGTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR TCA 72 bp | AGTTCAGCAGTGGTGACAACTCCTTCCCCATGTTTGTaGAACAGCATGAGGGGTGATGGCATCAGCTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: SSAVVTTPSPCL*NSMRGDGISFF Trigger: GAAGAAGCTGATGCCATCACCCCTCATGCTGTTTCACAAACATGGGGAAGGAGTTGTCACCACTGCTGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR TCA 72 bp | CCATCTCTGTGCAGGCCTAAAGAACTCCTTTCCAGATaGGGTGAAGCTCATCAAGATGTGTCTGTCATCACT | + |
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Preference number: 3 (lower is better) Translates to: PSLCRPKELLSR*GEAHQDVSVIT Trigger: AGTGATGACAGACACATCTTGATGAGCTTCACCTCATCTGGAAAGGAGTTCTTTAGGCCTGCACAGAGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR TCA 72 bp | AACTCCTTCCCCATGTTTGTGAAACAGCATGAGGGGTaGTGGCATCAGCTTCTTCCTGAGAAGTTTGGTACA | + |
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Preference number: 3 (lower is better) Translates to: NSFPMFVKQHEG*WHQLLPEKFGT Trigger: TGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCTGTTTCACAAACATGGGGAAGGAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CAA 90 bp | AGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATAGATCCTTTCTGATCTaGTGTTGGTTCTGCTTGCAG | + |
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Preference number: 3 (lower is better) Translates to: SMRGDGISFFLRSLVQLDRSFLI*CWFCLQ Trigger: CTGCAAGCAGAACCAACACAAGATCAGAAAGGATCT...ATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CAA 90 bp | TTCAGTCTGTCATTAATCTCTGCCCTGACCTTTGTTGTTTCTTTTTGCCAAATGCTTTCTGATCTTGTGTaGGTTCTGCTTGCAGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: FSLSLISALTFVVSFCQMLSDLV*VLLAAF Trigger: GAAGGCTGCAAGCAGAACCAACACAAGATCAGAAAG...CATTTGGCAAAAAGAAACAACAAAGGTCAGGGCAGAGATTAATGACAGACTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCAAATACTCAGTAGGGCATCTTTTGCATTGCTCCCAAAATTTCGTCTCTTTTGGCTGAACTCCATTTaGTCTTCTTTGGATCATGAC | + |
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Preference number: 3 (lower is better) Translates to: MQILSRASFALLPKFRLFWLNSI*SSLDHD Trigger: GTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCA...AAAGAGACGAAATTTTGGGAGCAATGCAAAAGATGCCCTACTGAGTATTTGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000120732.8 ENSMUST00000131746.2 |
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| 3UTR GCA 72 bp | GTTTATATATTGTTCTTTCAGTCTGTCATTAATCTCTaGCCTGACCTTTGTTGTTTCTTTTTGCCAAATGCT | + |
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Preference number: 3 (lower is better) Translates to: VYILFFQSVINL*PDLCCFFLPNA Trigger: AGCATTTGGCAAAAAGAAACAACAAAGGTCAGGGCAGAGATTAATGACAGACTGAAAGAACAATATATAAAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CAA 72 bp | ACTGAACAGCTGGACCAGATCCTTTCTGATCTTGTGTaGGTTCTGCTTGCAGCCTTCCATCTCTGTGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: TEQLDQILSDLV*VLLAAFHLCAG Trigger: GCCTGCACAGAGATGGAAGGCTGCAAGCAGAACCAACACAAGATCAGAAAGGATCTGGTCCAGCTGTTCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CAA 72 bp | GGAAAACTGAACAGCTGGACCAGATCCTTTCTGATCTaGTGTTGGTTCTGCTTGCAGCCTTCCATCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GKLNSWTRSFLI*CWFCLQPSISV Trigger: CACAGAGATGGAAGGCTGCAAGCAGAACCAACACAAGATCAGAAAGGATCTGGTCCAGCTGTTCAGTTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CCA 90 bp | GTGAACTCCTGGACTACATGGGGCACGTATCTCTTCCAGCCAGAGCTCATCATCCCATTTTGTCTTCTTTaGATCATGACAGAATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: VNSWTTWGTYLFQPELIIPFCLL*IMTEFQ Trigger: CTGGAATTCTGTCATGATCCAAAGAAGACAAAATGG...GATGATGAGCTCTGGCTGGAAGAGATACGTGCCCCATGTAGTCCAGGAGTTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR TCA 90 bp | AACAGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGTAGGCATAGATGGCTaGACTCCATTTTGTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: NSMRGDGISFFLRSLVQLVGIDG*TPFCLL Trigger: AAGAAGACAAAATGGAGTTCAGCCATCTATGCCTAC...AAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CCA 90 bp | GTACCTACAGCCATCACTGGGAAACTGTGGATTACTGGTTATTCTCAGCTACGGACTTCAAGAAGTAACTaGAACACCTTTCCCTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: VPTAITGKLWITGYSQLRTSRSN*NTFPCH Trigger: ATGACAGGGAAAGGTGTTCCAGTTACTTCTTGAAGT...CCGTAGCTGAGAATAACCAGTAATCCACAGTTTCCCAGTGATGGCTGTAGGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121210.8 |
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| 3UTR CAA 72 bp | TGTAGGCATAGATGGCTGAACTCCATTTTGTCTTCTTaGGATCATGACAGAATTCCAGAATCGCCGGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: CRHRWLNSILSS*DHDRIPESPAV Trigger: AACTGCCGGCGATTCTGGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCTATGCCTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131746.2 |
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| CDS-3UTR GCA 90 bp | AGGATCTGGAAAACTGAACAGCTGGACCAGATCCTTTCTGATCTTGTGTTGGTTAATTTCGTCTCTTTCTaGTGCTGTAGGCATAGATGG | + |
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Preference number: 4 (lower is better) Translates to: RIWKTEQLDQILSDLVLVNFVSF*CCRHRW Trigger: CCATCTATGCCTACAGCAGCAGAAAGAGACGAAATT...AACCAACACAAGATCAGAAAGGATCTGGTCCAGCTGTTCAGTTTTCCAGATCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CCA 90 bp | AAATGTAACAGTGGCAAGTTCAGCAGTGGTGACAACTCCTTCCCCATGTTTGTGACTTCAAGAAGTAACTaGAACACCTTTCCCTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: KCNSGKFSSGDNSFPMFVTSRSN*NTFPCH Trigger: ATGACAGGGAAAGGTGTTCCAGTTACTTCTTGAAGT...CACAAACATGGGGAAGGAGTTGTCACCACTGCTGAACTTGCCACTGTTACATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CAA 72 bp | TTCTGCTGCTGTAGGCATAGATGGCTGAACTCCATTTaGTCTTCTTTGGATCATGACAGAATTCCAGAATCG | + |
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Preference number: 4 (lower is better) Translates to: FCCCRHRWLNSI*SSLDHDRIPES Trigger: CGATTCTGGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCTATGCCTACAGCAGCAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131746.2 |
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| CDS-3UTR TCA 90 bp | AGAATTCCAGAATCGCCGGCAGTTTTTGTACTTCAAGAAGTAACTGGAACACCTAAACACAAAGACTTCTaGAGCTGTTTTCCCCGACAA | + |
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Preference number: 4 (lower is better) Translates to: RIPESPAVFVLQEVTGTPKHKDF*SCFPRQ Trigger: TTGTCGGGGAAAACAGCTTCAGAAGTCTTTGTGTTT...AGGTGTTCCAGTTACTTCTTGAAGTACAAAAACTGCCGGCGATTCTGGAATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000131746.2 |
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| 3UTR CAA 72 bp | TTCTGCTGCTGTAGGCATAGATGGCTGAACTCCATTTaGTCTTCTTTGGATCATGACAGAATTCTAGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: FCCCRHRWLNSI*SSLDHDRILGR Trigger: TCTTCCTAGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCTATGCCTACAGCAGCAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120732.8 |
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| CDS-3UTR CCA 90 bp | AATTTCGTCTCTTTCTGCTGCTGTAGGCATAGATGGCTGAACTCCATTTTGTCTACTTCAAGAAGTAACTaGAACACCTTTCCCTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: NFVSFCCCRHRWLNSILSTSRSN*NTFPCH Trigger: ATGACAGGGAAAGGTGTTCCAGTTACTTCTTGAAGT...AGACAAAATGGAGTTCAGCCATCTATGCCTACAGCAGCAGAAAGAGACGAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120732.8 |
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| 3UTR CAA 72 bp | TGTAGGCATAGATGGCTGAACTCCATTTTGTCTTCTTaGGATCATGACAGAATTCTAGGAAGACTTATTGAT | + |
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Preference number: 4 (lower is better) Translates to: CRHRWLNSILSS*DHDRILGRLID Trigger: ATCAATAAGTCTTCCTAGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCTATGCCTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120732.8 |
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| 3UTR CAA 72 bp | GCCCTGACCTTTGTTGTTTCTTTTTGCCAAATGCTTTaGGTTTGGATCATTCGTGTTTTTCTAAGACTTTCA | + |
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Preference number: 4 (lower is better) Translates to: ALTFVVSFCQML*VWIIRVFLRLS Trigger: TGAAAGTCTTAGAAAAACACGAATGATCCAAACCAAAAGCATTTGGCAAAAAGAAACAACAAAGGTCAGGGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| 3UTR CAA 72 bp | GTCATTAATCTCTGCCCTGACCTTTGTTGTTTCTTTTaGCCAAATGCTTTTGGTTTGGATCATTCGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: VINLCPDLCCFF*PNAFGLDHSCF Trigger: AAAACACGAATGATCCAAACCAAAAGCATTTGGCAAAAAGAAACAACAAAGGTCAGGGCAGAGATTAATGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CAA 90 bp | GTGAACTCCTGGACTACATGGGGCACGTATCTCTTCCAGCCAGAGCTCATCATCAGGGCATCTTTTGCATaGCTCCCAAAATTTCGTCTC | + |
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Preference number: 5 (lower is better) Translates to: VNSWTTWGTYLFQPELIIRASFA*LPKFRL Trigger: GAGACGAAATTTTGGGAGCAATGCAAAAGATGCCCT...GATGATGAGCTCTGGCTGGAAGAGATACGTGCCCCATGTAGTCCAGGAGTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CAA 90 bp | GTGAACTCCTGGACTACATGGGGCACGTATCTCTTCCAGCCAGAGCTCATCATCTCAGTAGGGCATCTTTaGCATTGCTCCCAAAATTTC | + |
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Preference number: 5 (lower is better) Translates to: VNSWTTWGTYLFQPELIISVGHL*HCSQNF Trigger: GAAATTTTGGGAGCAATGCAAAAGATGCCCTACTGA...GATGATGAGCTCTGGCTGGAAGAGATACGTGCCCCATGTAGTCCAGGAGTTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CAA 90 bp | GGTCAAAGAGTAAGTGTACCTACAGCCATCACTGGGAAACTGTGGATTACTGGTAAGAAGCTTGAGAAGTaGGGCTTACCCAGAATCGCC | + |
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Preference number: 5 (lower is better) Translates to: GQRVSVPTAITGKLWITGKKLEK*GLPRIA Trigger: GGCGATTCTGGGTAAGCCCAACTTCTCAAGCTTCTT...ACCAGTAATCCACAGTTTCCCAGTGATGGCTGTAGGTACACTTACTCTTTGACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121210.8 |
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| CDS-3UTR CAA 90 bp | AGCATGAGGGGTGATGGCATCAGCTTCTTCCTGAGAAGTTTGGTACAACTTGATTCCATTTTGTCTTCTTaGGATCATGACAGAATTCCA | + |
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Preference number: 5 (lower is better) Translates to: SMRGDGISFFLRSLVQLDSILSS*DHDRIP Trigger: TGGAATTCTGTCATGATCCAAAGAAGACAAAATGGA...ATCAAGTTGTACCAAACTTCTCAGGAAGAAGCTGATGCCATCACCCCTCATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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| CDS-3UTR CAA 90 bp | AAGAACTCCTTTCCAGATGAGGTGAAGCTCATCAAGATGTGTCTGTCATCACTTTGGCTGAACTCCATTTaGTCTTCTTTGGATCATGAC | + |
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Preference number: 5 (lower is better) Translates to: KNSFPDEVKLIKMCLSSLWLNSI*SSLDHD Trigger: GTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCA...AAGTGATGACAGACACATCTTGATGAGCTTCACCTCATCTGGAAAGGAGTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150618.8 |
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