Pregenerated sensors for CHCHD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037938Ensembl transcript IDs: ENSMUST00000035481.5
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGCCTACCTCCAACACACAGACAGCAGGGCCAGGGAGGGCTGGCTaGGTCATCCTACTCCTGAGCCTAGAACAAGAGCACCCAGGCCCC | + |
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Preference number: 1 (lower is better) Translates to: KPTSNTQTAGPGRAG*VILLLSLEQEHPGP Trigger: GGGGCCTGGGTGCTCTTGTTCTAGGCTCAGGAGTAGGATGACTCAGCCAGCCCTCCCTGGCCCTGCTGTCTGTGTGTTGGAGGTAGGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR TCA 90 bp | GCTGGAATCAGAGCCCAGTACTCAGTCTTTATTTATTTAGTGTCCTaGTGTCCAGGAGCGCCAGACACACAGCAGGGCCCTCAAGACTCC | + |
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Preference number: 1 (lower is better) Translates to: AGIRAQYSVFIYLVS*CPGAPDTQQGPQDS Trigger: GGAGTCTTGAGGGCCCTGCTGTGTGTCTGGCGCTCCTGGACATCAGGACACTAAATAAATAAAGACTGAGTACTGGGCTCTGATTCCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR TCA 90 bp | CTCCTGAGCGCTCACTTGGCAGACCAAGGAAAGCCGGGGGATGGATaGGTAAGCTTTCTCTCATCGCTCTTCTCCCTTTCAATACTGAAG | + |
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Preference number: 1 (lower is better) Translates to: LLSAHLADQGKPGDG*VSFLSSLFSLSILK Trigger: CTTCAGTATTGAAAGGGAGAAGAGCGATGAGAGAAAGCTTACTCATCCATCCCCCGGCTTTCCTTGGTCTGCCAAGTGAGCGCTCAGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR CCA 90 bp | TGCCCAAAGTCCATGTCTACTGCTCAACTGGTTCTAATTCAGCAGTaGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAG | + |
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Preference number: 1 (lower is better) Translates to: CPKSMSTAQLVLIQQ*KKCAIYCSSATSQE Trigger: CTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAATTAGAACCAGTTGAGCAGTAGACATGGACTTTGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR-3UTR TCA 90 bp | ACGAGAAGGGGCCTCAGGTGGCCCAGTCTGGCCTCAAACCATGCAGCAAAGGACCCAGGGAGGGCTGGCTaGGTCATCCTACTCCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: TRRGLRWPSLASNHAAKDPGRAG*VILLLS Trigger: GCTCAGGAGTAGGATGACTCAGCCAGCCCTCCCTGG...GTCCTTTGCTGCATGGTTTGAGGCCAGACTGGGCCACCTGAGGCCCCTTCTCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR-3UTR CCA 90 bp | ACGAGAAGGGGCCTCAGGTGGCCCAGTCTGGCCTCAAACCATGCAGCAAAGGACAGGGCCAGGGAGGGCTaGCTGAGTCATCCTACTCCT | + |
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Preference number: 2 (lower is better) Translates to: TRRGLRWPSLASNHAAKDRAREG*LSHPTP Trigger: AGGAGTAGGATGACTCAGCCAGCCCTCCCTGGCCCT...GTCCTTTGCTGCATGGTTTGAGGCCAGACTGGGCCACCTGAGGCCCCTTCTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGGGCCTCAGGTGGCCCAGTCTGGCCTCAAACCATGCAGCAAAGGACGACGAAAGCTGGGCATTGTaGTTCACACCTAGAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: RRGLRWPSLASNHAAKDDESWAL*FTPRAL Trigger: CAGGGCTCTAGGTGTGAACCACAATGCCCAGCTTTC...GTCGTCCTTTGCTGCATGGTTTGAGGCCAGACTGGGCCACCTGAGGCCCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR-3UTR CCA 90 bp | GCATTGTGGTTCACACCTAGAGCCCTGGCACTCAGGAGACGGCTGTTGAATCTGTTCAATACTGAAGGCTaGAATCAGAGCCCAGTACTC | + |
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Preference number: 2 (lower is better) Translates to: ALWFTPRALALRRRLLNLFNTEG*NQSPVL Trigger: GAGTACTGGGCTCTGATTCCAGCCTTCAGTATTGAA...CAGATTCAACAGCCGTCTCCTGAGTGCCAGGGCTCTAGGTGTGAACCACAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR-3UTR CCA 90 bp | TTCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAGAATGTGTGTGGAAAGCTaGGCATTGTGGTTCACACCT | + |
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Preference number: 2 (lower is better) Translates to: FSSGRNVLFIAPLPRLKRMCVES*ALWFTP Trigger: AGGTGTGAACCACAATGCCCAGCTTTCCACACACAT...TCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR TCA 72 bp | AGAGCCCAGTACTCAGTCTTTATTTATTTAGTGTCCTaGTGTCCAGGAGCGCCAGACACACAGCAGGGCCCT | + |
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Preference number: 3 (lower is better) Translates to: RAQYSVFIYLVS*CPGAPDTQQGP Trigger: AGGGCCCTGCTGTGTGTCTGGCGCTCCTGGACATCAGGACACTAAATAAATAAAGACTGAGTACTGGGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR CCA 72 bp | ATTTTTAATGTTTATTTAACGAGAAGGGGCCTCAGGTaGCCCAGTCTGGCCTCAAACCATGCAGCAAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: IFNVYLTRRGLR*PSLASNHAAKD Trigger: GTCCTTTGCTGCATGGTTTGAGGCCAGACTGGGCCACCTGAGGCCCCTTCTCGTTAAATAAACATTAAAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR GCA 72 bp | TCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTaGCACGTCTCAAGAGAACAGTGTTACGGTGTAGTG | + |
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Preference number: 3 (lower is better) Translates to: SAVEEMCYLLLL*HVSREQCYGVV Trigger: CACTACACCGTAACACTGTTCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR CCA 72 bp | AAAACTCTTGTCACTCTTCTAGGCGAGGACATCAAGTaGGACGGTCAATCATGTCGGTTTTCTCAAAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: KTLVTLLGEDIK*DGQSCRFSQSP Trigger: TGGACTTTGAGAAAACCGACATGATTGACCGTCCCACTTGATGTCCTCGCCTAGAAGAGTGACAAGAGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR GCA 72 bp | TGCTCAACTGGTTCTAATTCAGCAGTGGAAGAAATGTaGTATTTATTGCTCCTCTGCCACGTCTCAAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: CSTGSNSAVEEM*YLLLLCHVSRE Trigger: TTCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAATTAGAACCAGTTGAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CCA 90 bp | CTGAGTCATCCTACTCCTGAGCCTAGAACAAGAGCACCCAGGCCCCTCCTGAGCTGGCGGATGATCGGGTaGGAGGACGTGCAGCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LSHPTPEPRTRAPRPLLSWRMIG*EDVQRA Trigger: TGCTCGCTGCACGTCCTCCCACCCGATCATCCGCCA...GCTCAGGAGGGGCCTGGGTGCTCTTGTTCTAGGCTCAGGAGTAGGATGACTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR GCA 90 bp | AAGGGGCCTCAGGTGGCCCAGTCTGGCCTCAAACCATGCAGCAAAGGACGACCTACCTGCTCTGCACACTaGAGGAAGCGGCGCATGTGT | + |
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Preference number: 4 (lower is better) Translates to: KGPQVAQSGLKPCSKGRPTCSAH*RKRRMC Trigger: ACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGGT...AGGTCGTCCTTTGCTGCATGGTTTGAGGCCAGACTGGGCCACCTGAGGCCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR GCA 90 bp | AAAGCTGGGCATTGTGGTTCACACCTAGAGCCCTGGCACTCAGGAGACGGCTGTTGGCTGCACCTGCTCTaGACACTGCAGGAAGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: KAGHCGSHLEPWHSGDGCWLHLL*TLQEAA Trigger: CGCCGCTTCCTGCAGTGTGCAGAGCAGGTGCAGCCA...ACAGCCGTCTCCTGAGTGCCAGGGCTCTAGGTGTGAACCACAATGCCCAGCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CCA 90 bp | TATTTATTTAGTGTCCTGATGTCCAGGAGCGCCAGACACACAGCAGGGCCCTCAGGCTCAGCACAGGCCTaGCGGATCTGGCGGATGATC | + |
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Preference number: 4 (lower is better) Translates to: YLFSVLMSRSARHTAGPSGSAQA*RIWRMI Trigger: GATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCC...TGAGGGCCCTGCTGTGTGTCTGGCGCTCCTGGACATCAGGACACTAAATAAATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR GCA 90 bp | GAGCGCTCACTTGGCAGACCAAGGAAAGCCGGGGGATGGATGAGTAAGCTTTCTCGACTCTGGCTTGGCTaGCACACATTGGCCATACTG | + |
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Preference number: 4 (lower is better) Translates to: ERSLGRPRKAGGWMSKLSRLWLG*HTLAIL Trigger: CAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCG...AGAAAGCTTACTCATCCATCCCCCGGCTTTCCTTGGTCTGCCAAGTGAGCGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CCA 90 bp | ATTCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAGCAGGCCTGGCGGATCTaGCGGATGATCGGGTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: IQQWKKCAIYCSSATSQEQAWRI*RMIGWE Trigger: CTCCCACCCGATCATCCGCCAGATCCGCCAGGCCTG...CTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR GCA 90 bp | TCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAGAATCGGGTGGGAGGACGTaGAGCGAGCAATGCTCATCT | + |
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Preference number: 4 (lower is better) Translates to: SAVEEMCYLLLLCHVSRESGGRT*SEQCSS Trigger: AGATGAGCATTGCTCGCTGCACGTCCTCCCACCCGA...TTCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR GCA 90 bp | TTCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAGACTTGGTGGCTGCACCTaGTCTGCACACTGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: FSSGRNVLFIAPLPRLKRLGGCT*SAHCRK Trigger: CTTCCTGCAGTGTGCAGAGCAGGTGCAGCCACCAAG...TCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CCA 90 bp | ATTCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAGGCCACGACTCTGGCTTaGCTGCCACACATTGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: IQQWKKCAIYCSSATSQEATTLA*LPHIGH Trigger: ATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGC...CTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CCA 90 bp | CAAGCCATAGCTTTCCGGCTTTCAATTTTTAATGTTTATTTAACGAGAAGGGGCGTGCCTCTCCAGTTGTaGGTGAACTTGGTGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QAIAFRLSIFNVYLTRRGVPLQL*VNLVAA Trigger: TGCAGCCACCAAGTTCACCCACAACTGGAGAGGCAC...GCCCCTTCTCGTTAAATAAACATTAAAAATTGAAAGCCGGAAAGCTATGGCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| 3UTR CAA 72 bp | GGTTCTAATTCAGCAGTGGAAGAAATGTGCTATTTATaGCTCCTCTGCCACGTCTCAAGAGAACAGTGTTAC | + |
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Preference number: 4 (lower is better) Translates to: GSNSAVEEMCYL*LLCHVSREQCY Trigger: GTAACACTGTTCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAATTAGAACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 90 bp | GCAGGCAGGGGCTGTGCCTCTCCAGTTGTGGGTGAACTTGGTGGCTaGACCTGCTCTGCACACTGCAGGAAGCGGCGCATGTGTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: AGRGCASPVVGELGG*TCSAHCRKRRMCSA Trigger: TGCTGAACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGGTGCAGCCACCAAGTTCACCCACAACTGGAGAGGCACAGCCCCTGCCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 90 bp | AGGGGCTGTGCCTCTCCAGTTGTGGGTGAACTTGGTGGCTGCACCTaGTCTGCACACTGCAGGAAGCGGCGCATGTGTTCAGCACAGTTG | + |
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Preference number: 5 (lower is better) Translates to: RGCASPVVGELGGCT*SAHCRKRRMCSAQL Trigger: CAACTGTGCTGAACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGGTGCAGCCACCAAGTTCACCCACAACTGGAGAGGCACAGCCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CCA 90 bp | CACTTCTCAAAGGCTTCAAAGGGCTCAGCACAGGCCTGGCGGATCTaGCGGATGATCGGGTGGGAGGACGTGCAGCGAGCAATGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: HFSKASKGSAQAWRI*RMIGWEDVQRAMLI Trigger: GATGAGCATTGCTCGCTGCACGTCCTCCCACCCGATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCCCTTTGAAGCCTTTGAGAAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CCA 90 bp | AAGCGAAGACACTTCTCAAAGGCTTCAAAGGGCTCAGCACAGGCCTaGCGGATCTGGCGGATGATCGGGTGGGAGGACGTGCAGCGAGCA | + |
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Preference number: 5 (lower is better) Translates to: KRRHFSKASKGSAQA*RIWRMIGWEDVQRA Trigger: TGCTCGCTGCACGTCCTCCCACCCGATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCCCTTTGAAGCCTTTGAGAAGTGTCTTCGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS TCA 90 bp | TCTCGATGCCACGACTCTGGCTTGGCTGCCACACATTGGCCATACTaGTCCAGCTCTCGGCTGCAGTATCGAGCAGTGACTTCCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SRCHDSGLAATHWPY*SSSRLQYRAVTSRA Trigger: AGCCCTGGAAGTCACTGCTCGATACTGCAGCCGAGAGCTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS TCA 90 bp | ATCGGGTGGGAGGACGTGCAGCGAGCAATGCTCATCTTAAGGTGGTaGCAATCTCGATGCCACGACTCTGGCTTGGCTGCCACACATTGG | + |
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Preference number: 5 (lower is better) Translates to: IGWEDVQRAMLILRW*QSRCHDSGLAATHW Trigger: CCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCACCTTAAGATGAGCATTGCTCGCTGCACGTCCTCCCACCCGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 90 bp | CCTGCTCTGCACACTGCAGGAAGCGGCGCATGTGTTCAGCACAGTTaGCCACTGCTGCCTCATTCAAGCGAAGACACTTCTCAAAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: PALHTAGSGACVQHS*PLLPHSSEDTSQRL Trigger: AAGCCTTTGAGAAGTGTCTTCGCTTGAATGAGGCAGCAGTGGGCAACTGTGCTGAACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 90 bp | CATCTTAAGGTGGTGACAATCTCGATGCCACGACTCTGGCTTGGCTaGCACACATTGGCCATACTGATCCAGCTCTCGGCTGCAGTATCG | + |
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Preference number: 5 (lower is better) Translates to: HLKVVTISMPRLWLG*HTLAILIQLSAAVS Trigger: CGATACTGCAGCCGAGAGCTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCACCTTAAGATG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 90 bp | TGCACACTGCAGGAAGCGGCGCATGTGTTCAGCACAGTTGCCCACTaGTGCCTCATTCAAGCGAAGACACTTCTCAAAGGCTTCAAAGGG | + |
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Preference number: 5 (lower is better) Translates to: CTLQEAAHVFSTVAH*CLIQAKTLLKGFKG Trigger: CCCTTTGAAGCCTTTGAGAAGTGTCTTCGCTTGAATGAGGCAGCAGTGGGCAACTGTGCTGAACACATGCGCCGCTTCCTGCAGTGTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CAA 90 bp | ACTAATGGTAGGCGGGGCATAGCCCACTGGCATGTGTGTGGAAAGCTGGGCATTATGTGTTCAGCACAGTaGCCCACTGCTGCCTCATTC | + |
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Preference number: 5 (lower is better) Translates to: TNGRRGIAHWHVCGKLGIMCSAQ*PTAASF Trigger: GAATGAGGCAGCAGTGGGCAACTGTGCTGAACACAT...AATGCCCAGCTTTCCACACACATGCCAGTGGGCTATGCCCCGCCTACCATTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CCA 90 bp | AGCAATGCTCATCTTAAGGTGGTGACAATCTCGATGCCACGACTCTaGCTTGGCTGCCACACATTGGCCATACTGATCCAGCTCTCGGCT | + |
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Preference number: 5 (lower is better) Translates to: SNAHLKVVTISMPRL*LGCHTLAILIQLSA Trigger: AGCCGAGAGCTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCACCTTAAGATGAGCATTGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS-3UTR CAA 90 bp | TTCAGCAGTGGAAGAAATGTGCTATTTATTGCTCCTCTGCCACGTCTCAAGAGACAGTTGTGGGTGAACTaGGTGGCTGCACCTGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: FSSGRNVLFIAPLPRLKRQLWVN*VAAPAL Trigger: CAGAGCAGGTGCAGCCACCAAGTTCACCCACAACTG...TCTCTTGAGACGTGGCAGAGGAGCAATAAATAGCACATTTCTTCCACTGCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS TCA 72 bp | CAAAGGGCTCAGCACAGGCCTGGCGGATCTGGCGGATaGTCGGGTGGGAGGACGTGCAGCGAGCAATGCTCA | + |
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Preference number: 6 (lower is better) Translates to: QRAQHRPGGSGG*SGGRTCSEQCS Trigger: TGAGCATTGCTCGCTGCACGTCCTCCCACCCGATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCCCTTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CCA 72 bp | AAGGCTTCAAAGGGCTCAGCACAGGCCTGGCGGATCTaGCGGATGATCGGGTGGGAGGACGTGCAGCGAGCA | + |
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Preference number: 6 (lower is better) Translates to: KASKGSAQAWRI*RMIGWEDVQRA Trigger: TGCTCGCTGCACGTCCTCCCACCCGATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCCCTTTGAAGCCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CCA 72 bp | CACTTCTCAAAGGCTTCAAAGGGCTCAGCACAGGCCTaGCGGATCTGGCGGATGATCGGGTGGGAGGACGTG | + |
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Preference number: 6 (lower is better) Translates to: HFSKASKGSAQA*RIWRMIGWEDV Trigger: CACGTCCTCCCACCCGATCATCCGCCAGATCCGCCAGGCCTGTGCTGAGCCCTTTGAAGCCTTTGAGAAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 72 bp | GCCTCTCCAGTTGTGGGTGAACTTGGTGGCTGCACCTaGTCTGCACACTGCAGGAAGCGGCGCATGTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ASPVVGELGGCT*SAHCRKRRMCS Trigger: TGAACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGGTGCAGCCACCAAGTTCACCCACAACTGGAGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CAA 90 bp | GTGGTGACAATCTCGATGCCACGACTCTGGCTTGGCTGCCACACATaGGCCATACTGATCCAGCTCTCGGCTGCAGTATCGAGCAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: VVTISMPRLWLGCHT*AILIQLSAAVSSSD Trigger: GTCACTGCTCGATACTGCAGCCGAGAGCTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 72 bp | GTGGTGACAATCTCGATGCCACGACTCTGGCTTGGCTaGCACACATTGGCCATACTGATCCAGCTCTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: VVTISMPRLWLG*HTLAILIQLSA Trigger: AGCCGAGAGCTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CAA 72 bp | ATCTCGATGCCACGACTCTGGCTTGGCTGCCACACATaGGCCATACTGATCCAGCTCTCGGCTGCAGTATCG | + |
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Preference number: 6 (lower is better) Translates to: ISMPRLWLGCHT*AILIQLSAAVS Trigger: CGATACTGCAGCCGAGAGCTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGAT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CAA 90 bp | ACCTGCTCTGCACACTGCAGGAAGCGGCGCATGTGTTCAGCACAGTaGCCCACTGCTGCCTCATTCAAGCGAAGACACTTCTCAAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: TCSAHCRKRRMCSAQ*PTAASFKRRHFSKA Trigger: AGCCTTTGAGAAGTGTCTTCGCTTGAATGAGGCAGCAGTGGGCAACTGTGCTGAACACATGCGCCGCTTCCTGCAGTGTGCAGAGCAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 72 bp | CAGGAAGCGGCGCATGTGTTCAGCACAGTTGCCCACTaGTGCCTCATTCAAGCGAAGACACTTCTCAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: QEAAHVFSTVAH*CLIQAKTLLKG Trigger: GCCTTTGAGAAGTGTCTTCGCTTGAATGAGGCAGCAGTGGGCAACTGTGCTGAACACATGCGCCGCTTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS GCA 72 bp | CACACTGCAGGAAGCGGCGCATGTGTTCAGCACAGTTaGCCACTGCTGCCTCATTCAAGCGAAGACACTTCT | + |
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Preference number: 6 (lower is better) Translates to: HTAGSGACVQHS*PLLPHSSEDTS Trigger: AGAAGTGTCTTCGCTTGAATGAGGCAGCAGTGGGCAACTGTGCTGAACACATGCGCCGCTTCCTGCAGTGTG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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| CDS CCA 72 bp | CATCTTAAGGTGGTGACAATCTCGATGCCACGACTCTaGCTTGGCTGCCACACATTGGCCATACTGATCCAG | + |
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Preference number: 6 (lower is better) Translates to: HLKVVTISMPRL*LGCHTLAILIQ Trigger: CTGGATCAGTATGGCCAATGTGTGGCAGCCAAGCCAGAGTCGTGGCATCGAGATTGTCACCACCTTAAGATG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035481.5 |
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