Pregenerated sensors for CHCHD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034203Ensembl transcript IDs: ENSMUST00000040835.9
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTGTCGGGAACGAGGCAGCAGCCCCATGTACTCCAGCAAGCACCTaGCCACCAGCCTCTTCCAGTAGGAATGGACCCACTCTTAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: AVGNEAAAPCTPAST*PPASSSRNGPTLKG Trigger: TCCTTTAAGAGTGGGTCCATTCCTACTGGAAGAGGCTGGTGGTCAGGTGCTTGCTGGAGTACATGGGGCTGCTGCCTCGTTCCCGACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR GCA 90 bp | CTTTCACTTAGGAAGGACCGGGAGTCACAGGATCCAATGCCACCCTaGAGCTGTAGGCACTGGAGCCTGGACAGCAAACAGACAATTAGC | + |
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Preference number: 1 (lower is better) Translates to: LSLRKDRESQDPMPP*SCRHWSLDSKQTIS Trigger: GCTAATTGTCTGTTTGCTGTCCAGGCTCCAGTGCCTACAGCTGCAGGGTGGCATTGGATCCTGTGACTCCCGGTCCTTCCTAAGTGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR TCA 90 bp | GATGAACTGACGCCTCAATCCAAAGACCCACAGACTCAACTCCCTTaGGTCCTGCCAGAAGTGGCTCTAGAGTGTCTGAGGAGTTGGCCA | + |
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Preference number: 1 (lower is better) Translates to: DELTPQSKDPQTQLP*VLPEVALECLRSWP Trigger: TGGCCAACTCCTCAGACACTCTAGAGCCACTTCTGGCAGGACTCAAGGGAGTTGAGTCTGTGGGTCTTTGGATTGAGGCGTCAGTTCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR TCA 90 bp | TCAGTACAGTGTGCTATCCATCATTCCTTTTTGCTTTTAGATGTGTaGGCACCACTCCTACTTAGCTACCCTGGCAGATGCCACGTGTCA | + |
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Preference number: 1 (lower is better) Translates to: SVQCAIHHSFLLLDV*APLLLSYPGRCHVS Trigger: TGACACGTGGCATCTGCCAGGGTAGCTAAGTAGGAGTGGTGCTCACACATCTAAAAGCAAAAAGGAATGATGGATAGCACACTGTACTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 90 bp | CTCCTACTTAGCTACCCTGGCAGATGCCACGTGTCACACTTTATATaGGCGTTCAGGTTTCTTGAACCCATAAATGAGTATTACCAGACA | + |
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Preference number: 1 (lower is better) Translates to: LLLSYPGRCHVSHFI*AFRFLEPINEYYQT Trigger: TGTCTGGTAATACTCATTTATGGGTTCAAGAAACCTGAACGCCCATATAAAGTGTGACACGTGGCATCTGCCAGGGTAGCTAAGTAGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 90 bp | GCTCTAGAGTGTCTGAGGAGTTGGCCAAGCCTGGAGAGGACTCTGTaGAAGGAAGGACCTAGACGTCATGCCTGGGAGCCCCCAGCATCA | + |
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Preference number: 2 (lower is better) Translates to: ALECLRSWPSLERTL*KEGPRRHAWEPPAS Trigger: TGATGCTGGGGGCTCCCAGGCATGACGTCTAGGTCCTTCCTTCAACAGAGTCCTCTCCAGGCTTGGCCAACTCCTCAGACACTCTAGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CTGAGGGTCTGTAGGGTAGCTTGGTGCGTGTCCCTTGGTTACAAAAGGGCTGTGTTCTCAGCAACCACATaGTGGCTCACAACCACCTGT | + |
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Preference number: 2 (lower is better) Translates to: LRVCRVAWCVSLGYKRAVFSATT*WLTTTC Trigger: ACAGGTGGTTGTGAGCCACCATGTGGTTGCTGAGAA...CACAGCCCTTTTGTAACCAAGGGACACGCACCAAGCTACCCTACAGACCCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAGATGCCACGTGTCACACTTTATATGGGCGTTCAGGTTTCTTGAACCCATAGAGTGTCTGAGGAGTTaGCCAAGCCTGGAGAGGACT | + |
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Preference number: 2 (lower is better) Translates to: GRCHVSHFIWAFRFLEPIECLRS*PSLERT Trigger: AGTCCTCTCCAGGCTTGGCCAACTCCTCAGACACTC...TATGGGTTCAAGAAACCTGAACGCCCATATAAAGTGTGACACGTGGCATCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAGATGCCACGTGTCACACTTTATATGGGCGTTCAGGTTTCTTGAACCCATAGCACCTGTCCCAGTGTaGTATGGCAGCATCCTGGTA | + |
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Preference number: 2 (lower is better) Translates to: GRCHVSHFIWAFRFLEPIAPVPV*YGSILV Trigger: TACCAGGATGCTGCCATACCACACTGGGACAGGTGC...TATGGGTTCAAGAAACCTGAACGCCCATATAAAGTGTGACACGTGGCATCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CTGAGGGTCTGTAGGGTAGCTTGGTGCGTGTCCCTTGGTTACAAAAGGGCTGTGAAAATTACAAAAGGCTaGGATGTGGCTTCATGGCGA | + |
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Preference number: 2 (lower is better) Translates to: LRVCRVAWCVSLGYKRAVKITKG*DVASWR Trigger: TCGCCATGAAGCCACATCCCAGCCTTTTGTAATTTT...CACAGCCCTTTTGTAACCAAGGGACACGCACCAAGCTACCCTACAGACCCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | AGTCCTGCCAGAAGTGGCTCTAGAGTGTCTGAGGAGTTGGCCAAGCCTGGAGAGTTAGACCATCTACCCTaGCCATATTCAATTGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: SPARSGSRVSEELAKPGELDHLP*PYSIAL Trigger: TAAGGCAATTGAATATGGCCAGGGTAGATGGTCTAA...CTCTCCAGGCTTGGCCAACTCCTCAGACACTCTAGAGCCACTTCTGGCAGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR TCA 90 bp | AGTAGTACATCCAGGAGTGGACTAATGTTTAAGGACAGGTTTATGCAGGACACACAGAAAGTCCCATGGTaGGTGGCAGCCATGTGGCCT | + |
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Preference number: 2 (lower is better) Translates to: SSTSRSGLMFKDRFMQDTQKVPW*VAAMWP Trigger: AGGCCACATGGCTGCCACTCACCATGGGACTTTCTG...TGTGTCCTGCATAAACCTGTCCTTAAACATTAGTCCACTCCTGGATGTACTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR TCA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATACTCCAGCAAGCACCTaGCCACCAGCCTCTTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHTPAST*PPASSS Trigger: ACTGGAAGAGGCTGGTGGTCAGGTGCTTGCTGGAGT...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR GCA 90 bp | CAAATGGCTTACAATCACTTGTTAATAACTTCCGCGCCAGGCAATCCAACACCCTGTAGGGTAGCTTGGTaGGTGTCCCTTGGTTACAAA | + |
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Preference number: 2 (lower is better) Translates to: QMAYNHLLITSAPGNPTPCRVAW*VSLGYK Trigger: TTTGTAACCAAGGGACACGCACCAAGCTACCCTACA...GGGTGTTGGATTGCCTGGCGCGGAAGTTATTAACAAGTGATTGTAAGCCATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR GCA 90 bp | TCAATTGCCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAGCTTGCTATTCACTAGTCACAGGATCCAATaGCACCCTGCAGCTGTAGGC | + |
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Preference number: 2 (lower is better) Translates to: SIALSVDVFRRKRSLLFTSHRIQ*HPAAVG Trigger: GCCTACAGCTGCAGGGTGGCATTGGATCCTGTGACT...AGTGAATAGCAAGCTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | TCAATTGCCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAGCTTGCTATTCACTTGCAGCTGTAGGCACTaGAGCCTGGACAGCAAACAG | + |
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Preference number: 2 (lower is better) Translates to: SIALSVDVFRRKRSLLFTCSCRH*SLDSKQ Trigger: CTGTTTGCTGTCCAGGCTCCAGTGCCTACAGCTGCA...AGTGAATAGCAAGCTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR GCA 90 bp | GGCAGATGCCACGTGTCACACTTTATATGGGCGTTCAGGTTTCTTGAACCCATAAGCAAAACAATAAACTaGAAACCCAGCCCATCCTTT | + |
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Preference number: 2 (lower is better) Translates to: GRCHVSHFIWAFRFLEPISKTIN*KPSPSF Trigger: AAAGGATGGGCTGGGTTTGCAGTTTATTGTTTTGCT...TATGGGTTCAAGAAACCTGAACGCCCATATAAAGTGTGACACGTGGCATCTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATTGTCCCAGTGTGGTATaGCAGCATCCTGGTACTCAG | + |
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Preference number: 2 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHCPSVV*QHPGTQ Trigger: CTGAGTACCAGGATGCTGCCATACCACACTGGGACA...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CAAGCCTCAGACATGTTCAGTCTCCACCATCATAAGAAAGCTAACAACTTTCTAGTAGGCACTGGAGCCTaGACAGCAAACAGACAATTA | + |
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Preference number: 2 (lower is better) Translates to: QASDMFSLHHHKKANNFLVGTGA*TANRQL Trigger: TAATTGTCTGTTTGCTGTCCAGGCTCCAGTGCCTAC...TAGAAAGTTGTTAGCTTTCTTATGATGGTGGAGACTGAACATGTCTGAGGCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATCAGACATTCCTCTGTTaGCTTCTGCTCTGGAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHQTFLC*LLLWKQ Trigger: CTGCTTCCAGAGCAGAAGCCAACAGAGGAATGTCTG...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CAAATGGCTTACAATCACTTGTTAATAACTTCCGCGCCAGGCAATCCAACACCCACAAAACTAACAGCTTaGCATGGTATTTGGGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: QMAYNHLLITSAPGNPTPTKLTA*HGIWEA Trigger: AGCTTCCCAAATACCATGCCAAGCTGTTAGTTTTGT...GGGTGTTGGATTGCCTGGCGCGGAAGTTATTAACAAGTGATTGTAAGCCATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR GCA 90 bp | TCAGACATGTTCAGTCTCCACCATCATAAGAAAGCTAACAACTTTCTAACTAGTTATGCAGGACACAGGTaGACACACGCCCTTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: SDMFSLHHHKKANNFLTSYAGHR*THALFF Trigger: GAAGAAAAGGGCGTGTGTGCACCTGTGTCCTGCATA...ACTAGTTAGAAAGTTGTTAGCTTTCTTATGATGGTGGAGACTGAACATGTCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAGATGCCACGTGTCACACTTTATATGGGCGTTCAGGTTTCTTGAACCCATAAAAGGGATACCAAAATaGATCAGAATAGATCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: GRCHVSHFIWAFRFLEPIKGIPK*IRIDQL Trigger: AAGCTGATCTATTCTGATCCATTTTGGTATCCCTTT...TATGGGTTCAAGAAACCTGAACGCCCATATAAAGTGTGACACGTGGCATCTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATCAGACTCCTCAAGACTaGAGTTACAGATGTGAGTGC | + |
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Preference number: 2 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHQTPQD*SYRCEC Trigger: GCACTCACATCTGTAACTCCAGTCTTGAGGAGTCTG...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR GCA 90 bp | TCAATTGCCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAGCTTGCTATTCACTTTAAGGACAGGTTTATaGAGGACACAGGTGCACACA | + |
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Preference number: 2 (lower is better) Translates to: SIALSVDVFRRKRSLLFTLRTGL*RTQVHT Trigger: TGTGTGCACCTGTGTCCTGCATAAACCTGTCCTTAA...AGTGAATAGCAAGCTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR TCA 90 bp | CAAGCCTCAGACATGTTCAGTCTCCACCATCATAAGAAAGCTAACAACTTTCTAGAACTTTCACAAAAGTaGCCAAAAGGCATTGTACAG | + |
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Preference number: 2 (lower is better) Translates to: QASDMFSLHHHKKANNFLELSQK*PKGIVQ Trigger: CTGTACAATGCCTTTTGGTCACTTTTGTGAAAGTTC...TAGAAAGTTGTTAGCTTTCTTATGATGGTGGAGACTGAACATGTCTGAGGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR GCA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATTTAGGTATGAGTGCCTaGACATATGTGTGCATGAAG | + |
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Preference number: 2 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHLGMSA*TYVCMK Trigger: CTTCATGCACACATATGTGCAGGCACTCATACCTAA...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CCA 90 bp | CAAGCCTCAGACATGTTCAGTCTCCACCATCATAAGAAAGCTAACAACTTTCTACTGAGTAACAACTTTTaGTTGCTGAGAAGTCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: QASDMFSLHHHKKANNFLLSNNF*LLRSLN Trigger: GTTGAGACTTCTCAGCAACCAAAAGTTGTTACTCAG...TAGAAAGTTGTTAGCTTTCTTATGATGGTGGAGACTGAACATGTCTGAGGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR TCA 90 bp | TCAATTGCCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAGCTTGCTATTCACTCACGATAAACTTTCCTaGGTAACAACTTTTGGTTGC | + |
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Preference number: 2 (lower is better) Translates to: SIALSVDVFRRKRSLLFTHDKLS*VTTFGC Trigger: GCAACCAAAAGTTGTTACTCAGGAAAGTTTATCGTG...AGTGAATAGCAAGCTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR GCA 72 bp | AGGAAGGACCGGGAGTCACAGGATCCAATGCCACCCTaGAGCTGTAGGCACTGGAGCCTGGACAGCAAACAG | + |
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Preference number: 3 (lower is better) Translates to: RKDRESQDPMPP*SCRHWSLDSKQ Trigger: CTGTTTGCTGTCCAGGCTCCAGTGCCTACAGCTGCAGGGTGGCATTGGATCCTGTGACTCCCGGTCCTTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR TCA 72 bp | AACGAGGCAGCAGCCCCATGTACTCCAGCAAGCACCTaGCCACCAGCCTCTTCCAGTAGGAATGGACCCACT | + |
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Preference number: 3 (lower is better) Translates to: NEAAAPCTPAST*PPASSSRNGPT Trigger: AGTGGGTCCATTCCTACTGGAAGAGGCTGGTGGTCAGGTGCTTGCTGGAGTACATGGGGCTGCTGCCTCGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR GCA 72 bp | CAATGCCACTGGCTGAGGGTCTGTAGGGTAGCTTGGTaGGTGTCCCTTGGTTACAAAAGGGCTGTGCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: QCHWLRVCRVAW*VSLGYKRAVPP Trigger: GGGAGGCACAGCCCTTTTGTAACCAAGGGACACGCACCAAGCTACCCTACAGACCCTCAGCCAGTGGCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | AGGCAATGCCACTGGCTGAGGGTCTGTAGGGTAGCTTaGTGCGTGTCCCTTGGTTACAAAAGGGCTGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: RQCHWLRVCRVA*CVSLGYKRAVP Trigger: AGGCACAGCCCTTTTGTAACCAAGGGACACGCACCAAGCTACCCTACAGACCCTCAGCCAGTGGCATTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | TCACAGGATCCAATGCCACCCTGCAGCTGTAGGCACTaGAGCCTGGACAGCAAACAGACAATTAGCTGTCGG | + |
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Preference number: 3 (lower is better) Translates to: SQDPMPPCSCRH*SLDSKQTISCR Trigger: CCGACAGCTAATTGTCTGTTTGCTGTCCAGGCTCCAGTGCCTACAGCTGCAGGGTGGCATTGGATCCTGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | AAGGCTGGGATGTGGCTTCATGGCGACCTTTCTGCCTaGCACACAAGCCTCAGACATGTTCAGTCTCCACCA | + |
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Preference number: 3 (lower is better) Translates to: KAGMWLHGDLSA*HTSLRHVQSPP Trigger: TGGTGGAGACTGAACATGTCTGAGGCTTGTGTGCCAGGCAGAAAGGTCGCCATGAAGCCACATCCCAGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CAA 90 bp | CTGAGGGTCTGTAGGGTAGCTTGGTGCGTGTCCCTTGGTTACAAAAGGGCTGTGTCAGACATTCCTCTGTaGGCTTCTGCTCTGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: LRVCRVAWCVSLGYKRAVSDIPL*ASALEA Trigger: TGCTTCCAGAGCAGAAGCCAACAGAGGAATGTCTGA...CACAGCCCTTTTGTAACCAAGGGACACGCACCAAGCTACCCTACAGACCCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR TCA 72 bp | TCCCAGTGTGGTATGGCAGCATCCTGGTACTCAGGATaGAGTATGGGCTGGGCCACTTCTCACAAACAGCTA | + |
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Preference number: 3 (lower is better) Translates to: SQCGMAASWYSG*SMGWATSHKQL Trigger: TAGCTGTTTGTGAGAAGTGGCCCAGCCCATACTTCATCCTGAGTACCAGGATGCTGCCATACCACACTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR TCA 72 bp | TCTGAGTCCTCTGAAAGAGCCAGTGCTCTTAACCACTaGGCCATTACACCCAGCCCTAACGTCACCAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: SESSERASALNH*AITPSPNVTKF Trigger: GAACTTGGTGACGTTAGGGCTGGGTGTAATGGCTCAGTGGTTAAGAGCACTGGCTCTTTCAGAGGACTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | GGCAACCTTGTCTCAAAATTACAAAAGGCTGGGATGTaGCTTCATGGCGACCTTTCTGCCTGGCACACAAGC | + |
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Preference number: 3 (lower is better) Translates to: GNLVSKLQKAGM*LHGDLSAWHTS Trigger: GCTTGTGTGCCAGGCAGAAAGGTCGCCATGAAGCCACATCCCAGCCTTTTGTAATTTTGAGACAAGGTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | GTGGTATGGCAGCATCCTGGTACTCAGGATGAAGTATaGGCTGGGCCACTTCTCACAAACAGCTATAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: VVWQHPGTQDEV*AGPLLTNSYSS Trigger: ACTGCTATAGCTGTTTGTGAGAAGTGGCCCAGCCCATACTTCATCCTGAGTACCAGGATGCTGCCATACCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | GAGTTTTACAGTAGTGGCACCTGTCCCAGTGTGGTATaGCAGCATCCTGGTACTCAGGATGAAGTATGGGCT | + |
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Preference number: 3 (lower is better) Translates to: EFYSSGTCPSVV*QHPGTQDEVWA Trigger: AGCCCATACTTCATCCTGAGTACCAGGATGCTGCCATACCACACTGGGACAGGTGCCACTACTGTAAAACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR TCA 72 bp | CATGGTGGCTCACAACCACCTGTAATGAATGGGACCTaGTGCCCTCCTCTGGTGCATCTGAAGAGAATGATT | + |
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Preference number: 3 (lower is better) Translates to: HGGSQPPVMNGT*CPPLVHLKRMI Trigger: AATCATTCTCTTCAGATGCACCAGAGGAGGGCATCAGGTCCCATTCATTACAGGTGGTTGTGAGCCACCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | TGTCTCAAAATTACAAAAGGCTGGGATGTGGCTTCATaGCGACCTTTCTGCCTGGCACACAAGCCTCAGACA | + |
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Preference number: 3 (lower is better) Translates to: CLKITKGWDVAS*RPFCLAHKPQT Trigger: TGTCTGAGGCTTGTGTGCCAGGCAGAAAGGTCGCCATGAAGCCACATCCCAGCCTTTTGTAATTTTGAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | GATCAAGGGCAACCTTGTCTCAAAATTACAAAAGGCTaGGATGTGGCTTCATGGCGACCTTTCTGCCTGGCA | + |
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Preference number: 3 (lower is better) Translates to: DQGQPCLKITKG*DVASWRPFCLA Trigger: TGCCAGGCAGAAAGGTCGCCATGAAGCCACATCCCAGCCTTTTGTAATTTTGAGACAAGGTTGCCCTTGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | CTCTCGAGTTTTACAGTAGTGGCACCTGTCCCAGTGTaGTATGGCAGCATCCTGGTACTCAGGATGAAGTAT | + |
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Preference number: 3 (lower is better) Translates to: LSSFTVVAPVPV*YGSILVLRMKY Trigger: ATACTTCATCCTGAGTACCAGGATGCTGCCATACCACACTGGGACAGGTGCCACTACTGTAAAACTCGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CAA 90 bp | CAAATGGCTTACAATCACTTGTTAATAACTTCCGCGCCAGGCAATCCAACACCCCCCCAGCATCAGATCTaGCAAGGAAATCGTCATTGC | + |
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Preference number: 3 (lower is better) Translates to: QMAYNHLLITSAPGNPTPPQHQI*QGNRHC Trigger: GCAATGACGATTTCCTTGCAAGATCTGATGCTGGGG...GGGTGTTGGATTGCCTGGCGCGGAAGTTATTAACAAGTGATTGTAAGCCATTTG 48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CAA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATAGAGTGTCTGAGGAGTaGGCCAAGCCTGGAGAGGAC | + |
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Preference number: 3 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHRVSEE*AKPGED Trigger: GTCCTCTCCAGGCTTGGCCAACTCCTCAGACACTCT...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | AATAACTTCCGCGCCAGGCAATCCAACACCCTCTTCTaGTTTCCACAGGTAATGTGCACACGTAATTACAGA | + |
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Preference number: 3 (lower is better) Translates to: NNFRARQSNTLF*FPQVMCTRNYR Trigger: TCTGTAATTACGTGTGCACATTACCTGTGGAAACCAGAAGAGGGTGTTGGATTGCCTGGCGCGGAAGTTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | AGCTACCCTGGCAGATGCCACGTGTCACACTTTATATaGGCGTTCAGGTTTCTTGAACCCATAAATGAGTAT | + |
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Preference number: 3 (lower is better) Translates to: SYPGRCHVSHFI*AFRFLEPINEY Trigger: ATACTCATTTATGGGTTCAAGAAACCTGAACGCCCATATAAAGTGTGACACGTGGCATCTGCCAGGGTAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CAA 90 bp | CATTCAGTGAACTCTACATTGTCACAATTCTCAAATTTGGTCAGCTCCATCCATCTGGAGAGGACTCTGTaGAAGGAAGGACCTAGACGT | + |
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Preference number: 3 (lower is better) Translates to: HSVNSTLSQFSNLVSSIHLERTL*KEGPRR Trigger: ACGTCTAGGTCCTTCCTTCAACAGAGTCCTCTCCAG...ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR GCA 72 bp | CCTCCTCTTAGACCATCTACCCTGGCCATATTCAATTaGCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: PPLRPSTLAIFN*LICRRVQKKEK Trigger: CTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGAATATGGCCAGGGTAGATGGTCTAAGAGGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR-3UTR CAA 90 bp | CAAATGGCTTACAATCACTTGTTAATAACTTCCGCGCCAGGCAATCCAACACCCAGAAGAAAGAGAAGCTaGCTATTCACTCAACATTCT | + |
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Preference number: 3 (lower is better) Translates to: QMAYNHLLITSAPGNPTPRRKRS*LFTQHS Trigger: AGAATGTTGAGTGAATAGCAAGCTTCTCTTTCTTCT...GGGTGTTGGATTGCCTGGCGCGGAAGTTATTAACAAGTGATTGTAAGCCATTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CCA 72 bp | ACAAAACAAACAAAACTAACAGCTTGGCATGGTATTTaGGAAGCTAATGCAGGAAGATCAAGGGCAACCTTG | + |
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Preference number: 3 (lower is better) Translates to: TKQTKLTAWHGI*EANAGRSRATL Trigger: CAAGGTTGCCCTTGATCTTCCTGCATTAGCTTCCCAAATACCATGCCAAGCTGTTAGTTTTGTTTGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | TGTCTGAGGAGTTGGCCAAGCCTGGAGAGGACTCTGTaGAAGGAAGGACCTAGACGTCATGCCTGGGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: CLRSWPSLERTL*KEGPRRHAWEP Trigger: GGGCTCCCAGGCATGACGTCTAGGTCCTTCCTTCAACAGAGTCCTCTCCAGGCTTGGCCAACTCCTCAGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| CDS-3UTR GCA 90 bp | AGTCCTGCCAGAAGTGGCTCTAGAGTGTCTGAGGAGTTGGCCAAGCCTGGAGAGCAAGAGCTTGTCCCTTaGTCTTTGGCTGCAGAGACC | + |
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Preference number: 4 (lower is better) Translates to: SPARSGSRVSEELAKPGEQELVP*SLAAET Trigger: GGTCTCTGCAGCCAAAGAGCAAGGGACAAGCTCTTG...CTCTCCAGGCTTGGCCAACTCCTCAGACACTCTAGAGCCACTTCTGGCAGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | AGTCCTGCCAGAAGTGGCTCTAGAGTGTCTGAGGAGTaGGCCAAGCCTGGAGAGGACTCTGTTGAAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SPARSGSRVSEE*AKPGEDSVEGR Trigger: CCTTCCTTCAACAGAGTCCTCTCCAGGCTTGGCCAACTCCTCAGACACTCTAGAGCCACTTCTGGCAGGACT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| CDS-3UTR CCA 90 bp | CTGAGGGTCTGTAGGGTAGCTTGGTGCGTGTCCCTTGGTTACAAAAGGGCTGTGGCATGCACTCTTGCATaGCCCGGAACTGGTCTATAC | + |
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Preference number: 4 (lower is better) Translates to: LRVCRVAWCVSLGYKRAVACTLA*PGTGLY Trigger: GTATAGACCAGTTCCGGGCCATGCAAGAGTGCATGC...CACAGCCCTTTTGTAACCAAGGGACACGCACCAAGCTACCCTACAGACCCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | GACGCCTCAATCCAAAGACCCACAGACTCAACTCCCTaGAGTCCTGCCAGAAGTGGCTCTAGAGTGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: DASIQRPTDSTP*SPARSGSRVSE Trigger: CTCAGACACTCTAGAGCCACTTCTGGCAGGACTCAAGGGAGTTGAGTCTGTGGGTCTTTGGATTGAGGCGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | CTAGACGTCATGCCTGGGAGCCCCCAGCATCAGATCTaGCAAGGAAATCGTCATTGCTTCAAGGTTACCTTT | + |
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Preference number: 4 (lower is better) Translates to: LDVMPGSPQHQI*QGNRHCFKVTF Trigger: AAAGGTAACCTTGAAGCAATGACGATTTCCTTGCAAGATCTGATGCTGGGGGCTCCCAGGCATGACGTCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| CDS-3UTR CCA 90 bp | TCAGACATGTTCAGTCTCCACCATCATAAGAAAGCTAACAACTTTCTAACTAGTCTCCACCGGCTCCACTaGCTTTGCCTCCTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SDMFSLHHHKKANNFLTSLHRLH*LCLLFL Trigger: GAGGAAGAGGAGGCAAAGCCAGTGGAGCCGGTGGAG...ACTAGTTAGAAAGTTGTTAGCTTTCTTATGATGGTGGAGACTGAACATGTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| CDS-3UTR GCA 90 bp | TCAATTGCCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAGCTTGCTATTCACTCCCTTGCTCTTTGGCTaGAGAGACCTTAGTGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SIALSVDVFRRKRSLLFTPLLFG*RDLSVS Trigger: GCTGACACTAAGGTCTCTGCAGCCAAAGAGCAAGGG...AGTGAATAGCAAGCTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | ATTTGGGAAGCTAATGCAGGAAGATCAAGGGCAACCTaGTCTCAAAATTACAAAAGGCTGGGATGTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: IWEANAGRSRAT*SQNYKRLGCGF Trigger: GAAGCCACATCCCAGCCTTTTGTAATTTTGAGACAAGGTTGCCCTTGATCTTCCTGCATTAGCTTCCCAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | TTTGAGAACTGGTATCACTGTGTAACCTTGGCTGTCTaGAAACTCACTACACTAAGAGATCAAGCTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: FENWYHCVTLAV*KLTTLRDQADQ Trigger: TTGGTCAGCTTGATCTCTTAGTGTAGTGAGTTTCAAGACAGCCAAGGTTACACAGTGATACCAGTTCTCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | GTTCCATGTGTGAAGTTGCATTCAGTGAACTCTACATaGTCACAATTCTCAAATTTGGTCAGCTCCATCCAT | + |
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Preference number: 4 (lower is better) Translates to: VPCVKLHSVNST*SQFSNLVSSIH Trigger: ATGGATGGAGCTGACCAAATTTGAGAATTGTGACAATGTAGAGTTCACTGAATGCAACTTCACACATGGAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| 3UTR CAA 72 bp | TTTCTTTCTCTCTGTTTTATTGTTCCATGTGTGAAGTaGCATTCAGTGAACTCTACATTGTCACAATTCTCA | + |
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Preference number: 4 (lower is better) Translates to: FLSLCFIVPCVK*HSVNSTLSQFS Trigger: TGAGAATTGTGACAATGTAGAGTTCACTGAATGCAACTTCACACATGGAACAATAAAACAGAGAGAAAGAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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| CDS-3UTR CAA 90 bp | TCAATTGCCTTATCTGTAGACGTGTTCAGAAGAAAGAGAAGCTTGCTATTCACTTCAAGAGCTTGTCCCTaGCTCTTTGGCTGCAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: SIALSVDVFRRKRSLLFTSRACP*LFGCRD Trigger: GTCTCTGCAGCCAAAGAGCAAGGGACAAGCTCTTGA...AGTGAATAGCAAGCTTCTCTTTCTTCTGAACACGTCTACAGATAAGGCAATTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040835.9 |
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