RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHCHD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053768

Ensembl transcript IDs: ENSMUST00000066379.11, ENSMUST00000115091.2, ENSMUST00000124436.8, ENSMUST00000127666.8, ENSMUST00000129069.8

Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATCTaGAATAGTTTAATGTCCCTCCTCCCAGCTTTGTCAGAGTGGAAG +
Preference number: 1 (lower is better)
Translates to: LHCCPSPVLSCCLSI*NSLMSLLPALSEWK
Trigger: CTTCCACTCTGACAAAGCTGGGAGGAGGGACATTAAACTATTTCAGATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR GCA 90 bp GAAGGAACATCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATaGCACTCAGAAGATGTCAGCACAGAGACCTCTGGAATTAACGTT +
Preference number: 1 (lower is better)
Translates to: EGTSGLQVCSHLTRQ*HSEDVSTETSGINV
Trigger: AACGTTAATTCCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
3UTR CCA 90 bp GAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATaGCTGTCCCTTGCCCACCCAAAACCACTTCCAAATACTCCTCAG +
Preference number: 1 (lower is better)
Translates to: EQQQSFTNVLVKQIT*LSLAHPKPLPNTPQ
Trigger: CTGAGGAGTATTTGGAAGTGGTTTTGGGTGGGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
3UTR-3UTR TCA 90 bp CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCCCAGAGCAGAGCAGCTaGGAGTCTGCTGGGTGTTCT +
Preference number: 2 (lower is better)
Translates to: PQSWQVYTVAPAQCFLAVPEQSS*ESAGCS
Trigger: AGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGG...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC +
Preference number: 2 (lower is better)
Translates to: VLASLHCCPSPVLSCCLSDTPRW*LCRTLS
Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCGAGAGTACAAAAAGGTaGGGTGGACTGCCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPESTKR*GGLPSS
Trigger: AGAGGAAGGCAGTCCACCCCACCTTTTTGTACTCTC...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCGAAGTCACTAAATGCTaGATGGAGCCTGGAGTGACG +
Preference number: 2 (lower is better)
Translates to: VLASLHCCPSPVLSCCLSEVTKC*MEPGVT
Trigger: CGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTC...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCTCTGTTTGGCATGGTTaGCACAGTGCATGTATTGGC +
Preference number: 2 (lower is better)
Translates to: VLASLHCCPSPVLSCCLSSVWHG*HSACIG
Trigger: GCCAATACATGCACTGTGTCAACCATGCCAAACAGA...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR GCA 90 bp TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATA +
Preference number: 2 (lower is better)
Translates to: SLLPALSEWKSLNAGWSLDASPS*APLHWI
Trigger: TATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATC...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR GCA 90 bp TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACACTGCTCTTTGTAGAATaGATCCTGCTTCCGCATCAC +
Preference number: 2 (lower is better)
Translates to: LASQSRAAESLLGVLTVTLLFVE*ILLPHH
Trigger: GTGATGCGGAAGCAGGATGCATTCTACAAAGAGCAG...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATGAGAGTACAAAAAGGTaGGGTGGACTGCCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHESTKR*GGLPSS
Trigger: AGAGGAAGGCAGTCCACCCCACCTTTTTGTACTCTC...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACAGATATTCATACCGCTTaGACTTGGCTTCCACCTCTT +
Preference number: 2 (lower is better)
Translates to: LASQSRAAESLLGVLTVTDIHTA*TWLPPL
Trigger: AAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATC...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACATCTGCACAGACTGGATaGTATTCATACCGCTTGAAC +
Preference number: 2 (lower is better)
Translates to: LASQSRAAESLLGVLTVTSAQTG*YSYRLN
Trigger: GTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGA...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR GCA 90 bp CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCGAGTCCATTTTCCAGTaGCTGTCTGTCTTTAGTGGT +
Preference number: 2 (lower is better)
Translates to: PQSWQVYTVAPAQCFLAVESIFQ*LSVFSG
Trigger: ACCACTAAAGACAGACAGGCACTGGAAAATGGACTC...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR GCA 90 bp GGAGCCTGGAGTGACGAGAACGTTTTATATCAGTGGAAGCTGGAAAGAGAGTACTCTTTCTCTTCCAGCTaGCGAGCCAGATGCTTCGCC +
Preference number: 2 (lower is better)
Translates to: GAWSDENVLYQWKLEREYSFSSS*RARCFA
Trigger: GGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGA...GTACTCTCTTTCCAGCTTCCACTGATATAAAACGTTCTCGTCACTCCAGGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp CACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTATGCTGGATGGAGCCTaGAGTGACGAGAACGTTTTA +
Preference number: 2 (lower is better)
Translates to: HSLGKSTLLPQPSAFLLSMLDGA*SDENVL
Trigger: TAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCAT...AGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCCCAGCTTTGTCAGAGTaGAAGTCACTAAATGCTGGA +
Preference number: 2 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPPALSE*KSLNAG
Trigger: TCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGG...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCAACACTGGAGGATTTTaGTCTGCAGATCTGCACAGA +
Preference number: 2 (lower is better)
Translates to: PQSWQVYTVAPAQCFLAVNTGGF*SADLHR
Trigger: TCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGTT...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR GCA 90 bp TCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCAGAGTCCATTTTCCAGTaGCTGTCTGTCTTTAGTGGT +
Preference number: 2 (lower is better)
Translates to: SWQVYTVAPAQCFLAVSPESIFQ*LSVFSG
Trigger: ACCACTAAAGACAGACAGGCACTGGAAAATGGACTC...TGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACACAGATCTGCACAGACTaGATGATATTCATACCGCTT +
Preference number: 2 (lower is better)
Translates to: LASQSRAAESLLGVLTVTQICTD*MIFIPL
Trigger: AAGCGGTATGAATATCATCCAGTCTGTGCAGATCTG...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR CAA 90 bp ATTAGCTTCTATATAATGAGAAGAGCACACCCAGGCTCCACAGTCTaGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGT +
Preference number: 2 (lower is better)
Translates to: ISFYIMRRAHPGSTV*ASLHCCPSPVLSCC
Trigger: ACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCATTATATAGAAGCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCTTGATGACTGATCGCTaGTCTAGAACATGGCTTTTT +
Preference number: 2 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPLMTDR*SRTWLF
Trigger: AAAAAGCCATGTTCTAGATCAGCGATCAGTCATCAA...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR GCA 90 bp TCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGGTCTCATCTGACGAGGCAATaGCACTCAGAAGATGTCAGC +
Preference number: 2 (lower is better)
Translates to: SVIMEGGSPLPLRRNIRSHLTRQ*HSEDVS
Trigger: GCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATG...AGACCTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
3UTR-3UTR TCA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATTTGATGACTGATCGCTaGTCTAGAACATGGCTTTTT +
Preference number: 2 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHLMTDR*SRTWLF
Trigger: AAAAAGCCATGTTCTAGATCAGCGATCAGTCATCAA...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCCCTTTCTGTCTTCCTTaGAAGATCATCATAAGTTAC +
Preference number: 2 (lower is better)
Translates to: PQSWQVYTVAPAQCFLAVPFCLP*KIIISY
Trigger: GTAACTTATGATGATCTTTCAAGGAAGACAGAAAGG...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCAACGTTTTATATCAGTaGAAGCTGGAAAGAGAGTAC +
Preference number: 2 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPNVLYQ*KLEREY
Trigger: GTACTCTCTTTCCAGCTTCCACTGATATAAAACGTT...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp AATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTGTAAAGCAGATAACATaGCTGTCCCTTGCCCACCCA +
Preference number: 2 (lower is better)
Translates to: NMRTGGKENREGYGSWTLVKQIT*LSLAHP
Trigger: TGGGTGGGCAAGGGACAGCCATGTTATCTGCTTTAC...AAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
3UTR-3UTR CCA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATAACGTTTTATATCAGTaGAAGCTGGAAAGAGAGTAC +
Preference number: 2 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHNVLYQ*KLEREY
Trigger: GTACTCTCTTTCCAGCTTCCACTGATATAAAACGTT...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR TCA 90 bp TTTAATGTCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGTGCTGTCTCTCCATCTaGAATAGTTTAATGTCCCTC +
Preference number: 2 (lower is better)
Translates to: FNVPPPSFVRVEVTKCWMCCLSI*NSLMSL
Trigger: GAGGGACATTAAACTATTTCAGATGGAGAGACAGCA...CATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGACATTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp TTTAATGTCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGTCAGTATTCACTACTTaGTTGAACAAGCCAAGGTTG +
Preference number: 2 (lower is better)
Translates to: FNVPPPSFVRVEVTKCWMSVFTT*LNKPRL
Trigger: CAACCTTGGCTTGTTCAACCAAGTAGTGAATACTGA...CATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGACATTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CCA 90 bp AATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTCAAGATATCCAAATTTaGATCTGCCCATCATTTTAC +
Preference number: 2 (lower is better)
Translates to: NMRTGGKENREGYGSWTLQDIQI*ICPSFY
Trigger: GTAAAATGATGGGCAGATCCAAATTTGGATATCTTG...AAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
3UTR-3UTR TCA 90 bp AATATCATCTTACCTAATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGTTCATAAAATGGATTaGGCAGCAACAATCTTTCAC +
Preference number: 2 (lower is better)
Translates to: NIILPNMRTGGKENREGYVHKMD*AATIFH
Trigger: GTGAAAGATTGTTGCTGCTCAATCCATTTTATGAAC...ATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATTAGGTAAGATGATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
3UTR GCA 72 bp CACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTaGCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATC +
Preference number: 3 (lower is better)
Translates to: HPGSTVLASLHC*PSPVLSCCLSI
Trigger: GATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CAA 90 bp GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCTCCCTCCTCCCAGCTTaGTCAGAGTGGAAGTCACTA +
Preference number: 3 (lower is better)
Translates to: VLASLHCCPSPVLSCCLSSLLPA*SEWKSL
Trigger: TAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR GCA 72 bp TCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATaGCACTCAGAAGATGTCAGCACAGAGACCTCTGGA +
Preference number: 3 (lower is better)
Translates to: SGLQVCSHLTRQ*HSEDVSTETSG
Trigger: TCCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
3UTR-3UTR CAA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATTCCCTCCTCCCAGCTTaGTCAGAGTGGAAGTCACTA +
Preference number: 3 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHSLLPA*SEWKSL
Trigger: TAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR TCA 72 bp CAGAAGGAACATCAGGTCTCCAGGTGTGTTCCCATCTaGCGAGGCAATGCCACTCAGAAGATGTCAGCACAG +
Preference number: 3 (lower is better)
Translates to: QKEHQVSRCVPI*RGNATQKMSAQ
Trigger: CTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
3UTR-3UTR CAA 90 bp TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGCCTCTGGAATTAACGTaGAAGGAGCTTGCATGTTCT +
Preference number: 3 (lower is better)
Translates to: SLLPALSEWKSLNAGWSLPLELT*KELACS
Trigger: AGAACATGCAAGCTCCTTCAACGTTAATTCCAGAGG...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CAA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATCCTCTGGAATTAACGTaGAAGGAGCTTGCATGTTCT +
Preference number: 3 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHPLELT*KELACS
Trigger: AGAACATGCAAGCTCCTTCAACGTTAATTCCAGAGG...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR-3UTR CAA 90 bp CAGGTGTGTTCCCATCTGACGAGGCAATGCCACTCAGAAGATGTCAGCACAGAGCCTCTGGAATTAACGTaGAAGGAGCTTGCATGTTCT +
Preference number: 3 (lower is better)
Translates to: QVCSHLTRQCHSEDVSTEPLELT*KELACS
Trigger: AGAACATGCAAGCTCCTTCAACGTTAATTCCAGAGG...CTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
3UTR-3UTR CAA 90 bp TCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCAGTATTCACTACTTGGTaGAACAAGCCAAGGTTGCCT +
Preference number: 3 (lower is better)
Translates to: SWQVYTVAPAQCFLAVSPVFTTW*NKPRLP
Trigger: AGGCAACCTTGGCTTGTTCAACCAAGTAGTGAATAC...TGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR TCA 72 bp TGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATCTaGAATAGTTTAATGTCCCTCCTCCCAGCTTTGTCA +
Preference number: 3 (lower is better)
Translates to: CPSPVLSCCLSI*NSLMSLLPALS
Trigger: TGACAAAGCTGGGAGGAGGGACATTAAACTATTTCAGATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR GCA 72 bp CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATaGTGGATGGAGCCTGGAGTGACGAGAACGTTTTAT +
Preference number: 3 (lower is better)
Translates to: PPPSFVRVEVTK*WMEPGVTRTFY
Trigger: ATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR CCA 72 bp CCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTaGATGGAGCCTGGAGTGACGAGAACGTTTTATATC +
Preference number: 3 (lower is better)
Translates to: PPSFVRVEVTKC*MEPGVTRTFYI
Trigger: GATATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR CCA 72 bp ACACTGGAGGATTTTGGTCTGCAGATCTGCACAGACTaGATGATATTCATACCGCTTGAACTTGGCTTCCAC +
Preference number: 3 (lower is better)
Translates to: TLEDFGLQICTD*MIFIPLELGFH
Trigger: GTGGAAGCCAAGTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124436.8
3UTR-3UTR CAA 90 bp GAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTTGATCCAGCAAGATATCCAAATTaGGATCTGCCCATCATTTTA +
Preference number: 3 (lower is better)
Translates to: ELAVKRTEKAMGRGHFDPARYPN*DLPIIL
Trigger: TAAAATGATGGGCAGATCCAAATTTGGATATCTTGC...TGGATCAAAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
3UTR CCA 72 bp CAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATaGCTGTCCCTTGCCCACCCAAAACCACTTCCAAAT +
Preference number: 3 (lower is better)
Translates to: QSFTNVLVKQIT*LSLAHPKPLPN
Trigger: ATTTGGAAGTGGTTTTGGGTGGGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
3UTR TCA 72 bp CTGATCGCTGATCTAGAACATGGCTTTTTAAACTGTTaGTCAAAACACGTTATGATTCAGTTGAGTCCATTT +
Preference number: 3 (lower is better)
Translates to: LIADLEHGFLNC*SKHVMIQLSPF
Trigger: AAATGGACTCAACTGAATCATAACGTGTTTTGATCAACAGTTTAAAAAGCCATGTTCTAGATCAGCGATCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
3UTR TCA 72 bp ATCCAAATTTGGATCTGCCCATCATTTTACTACAAGTaGTTGATTCCCATGTTTCAGTTAATAGAGGTAGCA +
Preference number: 3 (lower is better)
Translates to: IQIWICPSFYYK*LIPMFQLIEVA
Trigger: TGCTACCTCTATTAACTGAAACATGGGAATCAATCACTTGTAGTAAAATGATGGGCAGATCCAAATTTGGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR TCA 90 bp GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCCCAGAGCAGAGCAGCTaGGAGTCTGCTGGGTGTTCT +
Preference number: 4 (lower is better)
Translates to: VLASLHCCPSPVLSCCLSPEQSS*ESAGCS
Trigger: AGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGG...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
3UTR CAA 72 bp ACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTaGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TPRLHSLGKSTL*PQPSAFLLSLH
Trigger: ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
CDS-3UTR TCA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCGCGTCTCTGGTGTTCTaGCTCCTTTTTGGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPASLVF*LLFGLL
Trigger: GAGCAAGCCAAAAAGGAGTCAGAACACCAGAGACGC...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
CDS-3UTR GCA 90 bp CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATCTTTCTCTTCCAGCTaGCGAGCCAGATGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: PPPSFVRVEVTKCWMEPGSFSSS*RARCFA
Trigger: GGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGA...TCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR TCA 90 bp TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC +
Preference number: 4 (lower is better)
Translates to: SLLPALSEWKSLNAGWSLDTPRW*LCRTLS
Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR TCA 90 bp AGGAACATCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATGCCACTCAGAGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC +
Preference number: 4 (lower is better)
Translates to: RNIRSPGVFPSDEAMPLRDTPRW*LCRTLS
Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...TCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR TCA 90 bp TGCCACTCAGAAGATGTCAGCACAGAGACCTCTGGAATTAACGTTGAAGGAGCTCCAGAGCAGAGCAGCTaGGAGTCTGCTGGGTGTTCT +
Preference number: 4 (lower is better)
Translates to: CHSEDVSTETSGINVEGAPEQSS*ESAGCS
Trigger: AGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGG...AGCTCCTTCAACGTTAATTCCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR GCA 90 bp CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGAGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATA +
Preference number: 4 (lower is better)
Translates to: PPPSFVRVEVTKCWMEPGDASPS*APLHWI
Trigger: TATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATC...TCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR GCA 90 bp GAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTTGATCCATCTTTCTCTTCCAGCTaGCGAGCCAGATGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: ELAVKRTEKAMGRGHFDPSFSSS*RARCFA
Trigger: GGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGA...TGGATCAAAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR GCA 90 bp GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCCTGCTCTTTGTAGAATaGATCCTGCTTCCGCATCAC +
Preference number: 4 (lower is better)
Translates to: VLASLHCCPSPVLSCCLSLLFVE*ILLPHH
Trigger: GTGATGCGGAAGCAGGATGCATTCTACAAAGAGCAG...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CCA 90 bp CACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTTGGTCAGCTGCTCATTaGCTGCAGCCCTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: HSLGKSTLLPQPSAFLLSWSAAH*LQPFLF
Trigger: AAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCA...AGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CCA 90 bp CACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTACACAGTGCATGTATTaGCTAGCCAGAGCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: HSLGKSTLLPQPSAFLLSTQCMY*LARAEQ
Trigger: CTGCTCTGCTCTGGCTAGCCAATACATGCACTGTGT...AGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CCA 90 bp TTCCCATCTGACGAGGCAATGCCACTCAGAAGATGTCAGCACAGAGACCTCTGGACACAGTGCATGTATTaGCTAGCCAGAGCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: FPSDEAMPLRRCQHRDLWTQCMY*LARAEQ
Trigger: CTGCTCTGCTCTGGCTAGCCAATACATGCACTGTGT...CCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR TCA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCGATATTCATACCGCTTaGACTTGGCTTCCACCTCTT +
Preference number: 4 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPDIHTA*TWLPPL
Trigger: AAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATC...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR TCA 90 bp CAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTTCTGTTTGGCATGGTTaGCACAGTGCATGTATTGGC +
Preference number: 4 (lower is better)
Translates to: QSWQVYTVAPAQCFLAVSSVWHG*HSACIG
Trigger: GCCAATACATGCACTGTGTCAACCATGCCAAACAGA...AGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR TCA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATTCTGCACAGACTGGATaGTATTCATACCGCTTGAAC +
Preference number: 4 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHSAQTG*YSYRLN
Trigger: GTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGA...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CCA 90 bp CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATGCTTAAGGCGTCTCTaGTGTTCTGACTCCTTTTTG +
Preference number: 4 (lower is better)
Translates to: PPPSFVRVEVTKCWMEPGCLRRL*CSDSFL
Trigger: CAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCA...TCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR TCA 90 bp CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATATCTTCATCAGAAACTaGAGCACCATAAACGCTGGA +
Preference number: 4 (lower is better)
Translates to: LGKSTLLPQPSAFLLSLHIFIRN*STINAG
Trigger: TCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGAT...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
CDS-3UTR TCA 90 bp CAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTATCTTCATCAGAAACTaGAGCACCATAAACGCTGGA +
Preference number: 4 (lower is better)
Translates to: QSWQVYTVAPAQCFLAVSIFIRN*STINAG
Trigger: TCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGAT...AGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066379.11
ENSMUST00000124436.8
CDS-3UTR CCA 90 bp TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGCAGATCTGCACAGACTaGATGATATTCATACCGCTT +
Preference number: 4 (lower is better)
Translates to: SLLPALSEWKSLNAGWSLQICTD*MIFIPL
Trigger: AAGCGGTATGAATATCATCCAGTCTGTGCAGATCTG...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR TCA 90 bp TGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGGGATATTCATACCGCTTaGACTTGGCTTCCACCTCTT +
Preference number: 4 (lower is better)
Translates to: CSVIMEGGSPLPLRRNIRDIHTA*TWLPPL
Trigger: AAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATC...CCTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR TCA 90 bp TGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGGTCTGCACAGACTGGATaGTATTCATACCGCTTGAAC +
Preference number: 4 (lower is better)
Translates to: CSVIMEGGSPLPLRRNIRSAQTG*YSYRLN
Trigger: GTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGA...CCTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR TCA 90 bp TTGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGTCTGTTTGGCATGGTTaGCACAGTGCATGTATTGGC +
Preference number: 4 (lower is better)
Translates to: LLSNYGRRVSTATQKEHQSVWHG*HSACIG
Trigger: GCCAATACATGCACTGTGTCAACCATGCCAAACAGA...CTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR CCA 90 bp ATGGCAATCACTGGGTTGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTAACACTGGAGGATTTTaGTCTGCAGATCTGCACAGA +
Preference number: 4 (lower is better)
Translates to: MAITGLLSNYGRRVSTATNTGGF*SADLHR
Trigger: TCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGTT...AGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCAACCCAGTGATTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS-3UTR CCA 90 bp AGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGAGTGACGAGAACGTTTTATAACACTGGAGGATTTTaGTCTGCAGATCTGCACAGA +
Preference number: 4 (lower is better)
Translates to: RVEVTKCWMEPGVTRTFYNTGGF*SADLHR
Trigger: TCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGTT...ATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR GCA 90 bp CAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGCTGTCCCTTGCCGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATA +
Preference number: 4 (lower is better)
Translates to: QQSFTNVLVKQITWLSLADASPS*APLHWI
Trigger: TATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATC...GGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR TCA 90 bp AATATCATCTTACCTAATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGCGTCTCTGGTGTTCTaGCTCCTTTTTGGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: NIILPNMRTGGKENREGYASLVF*LLFGLL
Trigger: GAGCAAGCCAAAAAGGAGTCAGAACACCAGAGACGC...ATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATTAGGTAAGATGATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR TCA 90 bp TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC +
Preference number: 4 (lower is better)
Translates to: WIEQQQSFTNVLVKQITWDTPRW*LCRTLS
Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR CCA 90 bp TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGTGGTCAGCTGCTCATTaGCTGCAGCCCTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: WIEQQQSFTNVLVKQITWWSAAH*LQPFLF
Trigger: AAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCA...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR TCA 90 bp CAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGCTGTCCCTTGCCATCTTCATCAGAAACTaGAGCACCATAAACGCTGGA +
Preference number: 4 (lower is better)
Translates to: QQSFTNVLVKQITWLSLAIFIRN*STINAG
Trigger: TCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGAT...GGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR CCA 90 bp TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGTGCTTAAGGCGTCTCTaGTGTTCTGACTCCTTTTTG +
Preference number: 4 (lower is better)
Translates to: WIEQQQSFTNVLVKQITWCLRRL*CSDSFL
Trigger: CAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCA...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS-3UTR CAA 90 bp CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTT +
Preference number: 5 (lower is better)
Translates to: PQSWQVYTVAPAQCFLAVLVSCS*AAALSL
Trigger: AAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAG...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CAA 90 bp ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCTCCAGCATGCTCTGTTaGGCATGGTTGACACAGTGC +
Preference number: 5 (lower is better)
Translates to: MRRAHPGSTVLASLHCCPSSMLC*AWLTQC
Trigger: GCACTGTGTCAACCATGCCAAACAGAGCATGCTGGA...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CAA 90 bp AGGAACATCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATGCCACTCAGAGACACAGTGCATGTATaGGCTAGCCAGAGCAGAGCA +
Preference number: 5 (lower is better)
Translates to: RNIRSPGVFPSDEAMPLRDTVHV*ASQSRA
Trigger: TGCTCTGCTCTGGCTAGCCAATACATGCACTGTGTC...TCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129069.8
CDS GCA 90 bp CCAGCTGCCGAGCTTTGTCTTCAATATCCAGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATATTCTTTCCCGAAGGACAGCTCTGG +
Preference number: 5 (lower is better)
Translates to: PAAELCLQYPDASPS*APLHWIFFPEGQLW
Trigger: CCAGAGCTGTCCTTCGGGAAAGAATATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATCTGGATATTGAAGACAAAGCTCGGCAGCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127666.8
CDS-3UTR CAA 90 bp AGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGAGTGACGAGAACGTTTTATGACACAGTGCATGTATaGGCTAGCCAGAGCAGAGCA +
Preference number: 5 (lower is better)
Translates to: RVEVTKCWMEPGVTRTFYDTVHV*ASQSRA
Trigger: TGCTCTGCTCTGGCTAGCCAATACATGCACTGTGTC...ATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066379.11
CDS-3UTR CAA 90 bp TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTT +
Preference number: 5 (lower is better)
Translates to: WIEQQQSFTNVLVKQITWLVSCS*AAALSL
Trigger: AAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAG...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115091.2
CDS GCA 72 bp CTGGATATTCTTTCCCGAAGGACAGCTCTGGTCAGCTaGTCATTGGCTGCAGCCCTTTCTCTTTCTAGGTCC +
Preference number: 6 (lower is better)
Translates to: LDILSRRTALVS*SLAAALSLSRS
Trigger: GGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAATATCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066379.11
ENSMUST00000115091.2
ENSMUST00000127666.8
CDS CCA 72 bp TTCTTTCCCGAAGGACAGCTCTGGTCAGCTGCTCATTaGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCTT +
Preference number: 6 (lower is better)
Translates to: FFPEGQLWSAAH*LQPFLFLGPLL
Trigger: AAGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066379.11
ENSMUST00000115091.2
ENSMUST00000127666.8
CDS CAA 72 bp ATTCTTTCCCGAAGGACAGCTCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCT +
Preference number: 6 (lower is better)
Translates to: ILSRRTALVSCS*AAALSLSRSLA
Trigger: AGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066379.11
ENSMUST00000115091.2
ENSMUST00000127666.8
CDS CAA 90 bp TCACTGGATATTCTTTCCCGAAGGACAGCTCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCTTGCTTAAGG +
Preference number: 6 (lower is better)
Translates to: SLDILSRRTALVSCS*AAALSLSRSLACLR
Trigger: CCTTAAGCAAGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAATATCCAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066379.11
ENSMUST00000115091.2
ENSMUST00000127666.8
CDS GCA 72 bp TTGGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCTTaGTTAAGGCGTCTCTGGTGTTCTGACTCCTTTTTG +
Preference number: 6 (lower is better)
Translates to: LAAALSLSRSLA*LRRLWCSDSFL
Trigger: CAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCAAGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066379.11
ENSMUST00000115091.2
ENSMUST00000127666.8
CDS GCA 72 bp TCTTCCAGCTGCCGAGCTTTGTCTTCAATATCCAGATaGTTCGCCTTCATGCGCTCCTCTTCACTGGATATT +
Preference number: 6 (lower is better)
Translates to: SSSCRALSSISR*FAFMRSSSLDI
Trigger: AATATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATCTGGATATTGAAGACAAAGCTCGGCAGCTGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127666.8