Pregenerated sensors for CHCHD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053768Ensembl transcript IDs: ENSMUST00000066379.11, ENSMUST00000115091.2, ENSMUST00000124436.8, ENSMUST00000127666.8, ENSMUST00000129069.8
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATCTaGAATAGTTTAATGTCCCTCCTCCCAGCTTTGTCAGAGTGGAAG | + |
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Preference number: 1 (lower is better) Translates to: LHCCPSPVLSCCLSI*NSLMSLLPALSEWK Trigger: CTTCCACTCTGACAAAGCTGGGAGGAGGGACATTAAACTATTTCAGATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR GCA 90 bp | GAAGGAACATCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATaGCACTCAGAAGATGTCAGCACAGAGACCTCTGGAATTAACGTT | + |
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Preference number: 1 (lower is better) Translates to: EGTSGLQVCSHLTRQ*HSEDVSTETSGINV Trigger: AACGTTAATTCCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
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| 3UTR CCA 90 bp | GAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATaGCTGTCCCTTGCCCACCCAAAACCACTTCCAAATACTCCTCAG | + |
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Preference number: 1 (lower is better) Translates to: EQQQSFTNVLVKQIT*LSLAHPKPLPNTPQ Trigger: CTGAGGAGTATTTGGAAGTGGTTTTGGGTGGGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
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| 3UTR-3UTR TCA 90 bp | CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCCCAGAGCAGAGCAGCTaGGAGTCTGCTGGGTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: PQSWQVYTVAPAQCFLAVPEQSS*ESAGCS Trigger: AGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGG...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: VLASLHCCPSPVLSCCLSDTPRW*LCRTLS Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCGAGAGTACAAAAAGGTaGGGTGGACTGCCTTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: MRRAHPGSTVLASLHCCPESTKR*GGLPSS Trigger: AGAGGAAGGCAGTCCACCCCACCTTTTTGTACTCTC...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCGAAGTCACTAAATGCTaGATGGAGCCTGGAGTGACG | + |
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Preference number: 2 (lower is better) Translates to: VLASLHCCPSPVLSCCLSEVTKC*MEPGVT Trigger: CGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTC...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCTCTGTTTGGCATGGTTaGCACAGTGCATGTATTGGC | + |
|
Preference number: 2 (lower is better) Translates to: VLASLHCCPSPVLSCCLSSVWHG*HSACIG Trigger: GCCAATACATGCACTGTGTCAACCATGCCAAACAGA...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR GCA 90 bp | TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATA | + |
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Preference number: 2 (lower is better) Translates to: SLLPALSEWKSLNAGWSLDASPS*APLHWI Trigger: TATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATC...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR GCA 90 bp | TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACACTGCTCTTTGTAGAATaGATCCTGCTTCCGCATCAC | + |
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Preference number: 2 (lower is better) Translates to: LASQSRAAESLLGVLTVTLLFVE*ILLPHH Trigger: GTGATGCGGAAGCAGGATGCATTCTACAAAGAGCAG...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATGAGAGTACAAAAAGGTaGGGTGGACTGCCTTCCTCT | + |
|
Preference number: 2 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHESTKR*GGLPSS Trigger: AGAGGAAGGCAGTCCACCCCACCTTTTTGTACTCTC...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACAGATATTCATACCGCTTaGACTTGGCTTCCACCTCTT | + |
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Preference number: 2 (lower is better) Translates to: LASQSRAAESLLGVLTVTDIHTA*TWLPPL Trigger: AAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATC...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACATCTGCACAGACTGGATaGTATTCATACCGCTTGAAC | + |
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Preference number: 2 (lower is better) Translates to: LASQSRAAESLLGVLTVTSAQTG*YSYRLN Trigger: GTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGA...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR GCA 90 bp | CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCGAGTCCATTTTCCAGTaGCTGTCTGTCTTTAGTGGT | + |
|
Preference number: 2 (lower is better) Translates to: PQSWQVYTVAPAQCFLAVESIFQ*LSVFSG Trigger: ACCACTAAAGACAGACAGGCACTGGAAAATGGACTC...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR GCA 90 bp | GGAGCCTGGAGTGACGAGAACGTTTTATATCAGTGGAAGCTGGAAAGAGAGTACTCTTTCTCTTCCAGCTaGCGAGCCAGATGCTTCGCC | + |
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Preference number: 2 (lower is better) Translates to: GAWSDENVLYQWKLEREYSFSSS*RARCFA Trigger: GGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGA...GTACTCTCTTTCCAGCTTCCACTGATATAAAACGTTCTCGTCACTCCAGGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | CACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTATGCTGGATGGAGCCTaGAGTGACGAGAACGTTTTA | + |
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Preference number: 2 (lower is better) Translates to: HSLGKSTLLPQPSAFLLSMLDGA*SDENVL Trigger: TAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCAT...AGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCCCAGCTTTGTCAGAGTaGAAGTCACTAAATGCTGGA | + |
|
Preference number: 2 (lower is better) Translates to: MRRAHPGSTVLASLHCCPPALSE*KSLNAG Trigger: TCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGG...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCAACACTGGAGGATTTTaGTCTGCAGATCTGCACAGA | + |
|
Preference number: 2 (lower is better) Translates to: PQSWQVYTVAPAQCFLAVNTGGF*SADLHR Trigger: TCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGTT...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR GCA 90 bp | TCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCAGAGTCCATTTTCCAGTaGCTGTCTGTCTTTAGTGGT | + |
|
Preference number: 2 (lower is better) Translates to: SWQVYTVAPAQCFLAVSPESIFQ*LSVFSG Trigger: ACCACTAAAGACAGACAGGCACTGGAAAATGGACTC...TGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGCTAGCCAGAGCAGAGCAGCTGAGAGTCTGCTGGGTGTTCTGACGGTAACACAGATCTGCACAGACTaGATGATATTCATACCGCTT | + |
|
Preference number: 2 (lower is better) Translates to: LASQSRAAESLLGVLTVTQICTD*MIFIPL Trigger: AAGCGGTATGAATATCATCCAGTCTGTGCAGATCTG...TGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR CAA 90 bp | ATTAGCTTCTATATAATGAGAAGAGCACACCCAGGCTCCACAGTCTaGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGT | + |
|
Preference number: 2 (lower is better) Translates to: ISFYIMRRAHPGSTV*ASLHCCPSPVLSCC Trigger: ACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCATTATATAGAAGCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCTTGATGACTGATCGCTaGTCTAGAACATGGCTTTTT | + |
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Preference number: 2 (lower is better) Translates to: MRRAHPGSTVLASLHCCPLMTDR*SRTWLF Trigger: AAAAAGCCATGTTCTAGATCAGCGATCAGTCATCAA...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGGTCTCATCTGACGAGGCAATaGCACTCAGAAGATGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: SVIMEGGSPLPLRRNIRSHLTRQ*HSEDVS Trigger: GCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATG...AGACCTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
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| 3UTR-3UTR TCA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATTTGATGACTGATCGCTaGTCTAGAACATGGCTTTTT | + |
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Preference number: 2 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHLMTDR*SRTWLF Trigger: AAAAAGCCATGTTCTAGATCAGCGATCAGTCATCAA...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCCCTTTCTGTCTTCCTTaGAAGATCATCATAAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: PQSWQVYTVAPAQCFLAVPFCLP*KIIISY Trigger: GTAACTTATGATGATCTTTCAAGGAAGACAGAAAGG...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCAACGTTTTATATCAGTaGAAGCTGGAAAGAGAGTAC | + |
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Preference number: 2 (lower is better) Translates to: MRRAHPGSTVLASLHCCPNVLYQ*KLEREY Trigger: GTACTCTCTTTCCAGCTTCCACTGATATAAAACGTT...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | AATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTGTAAAGCAGATAACATaGCTGTCCCTTGCCCACCCA | + |
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Preference number: 2 (lower is better) Translates to: NMRTGGKENREGYGSWTLVKQIT*LSLAHP Trigger: TGGGTGGGCAAGGGACAGCCATGTTATCTGCTTTAC...AAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATAACGTTTTATATCAGTaGAAGCTGGAAAGAGAGTAC | + |
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Preference number: 2 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHNVLYQ*KLEREY Trigger: GTACTCTCTTTCCAGCTTCCACTGATATAAAACGTT...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR TCA 90 bp | TTTAATGTCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGTGCTGTCTCTCCATCTaGAATAGTTTAATGTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: FNVPPPSFVRVEVTKCWMCCLSI*NSLMSL Trigger: GAGGGACATTAAACTATTTCAGATGGAGAGACAGCA...CATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGACATTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAATGTCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGTCAGTATTCACTACTTaGTTGAACAAGCCAAGGTTG | + |
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Preference number: 2 (lower is better) Translates to: FNVPPPSFVRVEVTKCWMSVFTT*LNKPRL Trigger: CAACCTTGGCTTGTTCAACCAAGTAGTGAATACTGA...CATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGACATTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CCA 90 bp | AATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTCAAGATATCCAAATTTaGATCTGCCCATCATTTTAC | + |
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Preference number: 2 (lower is better) Translates to: NMRTGGKENREGYGSWTLQDIQI*ICPSFY Trigger: GTAAAATGATGGGCAGATCCAAATTTGGATATCTTG...AAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
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| 3UTR-3UTR TCA 90 bp | AATATCATCTTACCTAATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGTTCATAAAATGGATTaGGCAGCAACAATCTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: NIILPNMRTGGKENREGYVHKMD*AATIFH Trigger: GTGAAAGATTGTTGCTGCTCAATCCATTTTATGAAC...ATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATTAGGTAAGATGATATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
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| 3UTR GCA 72 bp | CACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTaGCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATC | + |
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Preference number: 3 (lower is better) Translates to: HPGSTVLASLHC*PSPVLSCCLSI Trigger: GATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CAA 90 bp | GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCTCCCTCCTCCCAGCTTaGTCAGAGTGGAAGTCACTA | + |
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Preference number: 3 (lower is better) Translates to: VLASLHCCPSPVLSCCLSSLLPA*SEWKSL Trigger: TAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR GCA 72 bp | TCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATaGCACTCAGAAGATGTCAGCACAGAGACCTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: SGLQVCSHLTRQ*HSEDVSTETSG Trigger: TCCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
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| 3UTR-3UTR CAA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATTCCCTCCTCCCAGCTTaGTCAGAGTGGAAGTCACTA | + |
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Preference number: 3 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHSLLPA*SEWKSL Trigger: TAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR TCA 72 bp | CAGAAGGAACATCAGGTCTCCAGGTGTGTTCCCATCTaGCGAGGCAATGCCACTCAGAAGATGTCAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: QKEHQVSRCVPI*RGNATQKMSAQ Trigger: CTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCTTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
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| 3UTR-3UTR CAA 90 bp | TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGCCTCTGGAATTAACGTaGAAGGAGCTTGCATGTTCT | + |
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Preference number: 3 (lower is better) Translates to: SLLPALSEWKSLNAGWSLPLELT*KELACS Trigger: AGAACATGCAAGCTCCTTCAACGTTAATTCCAGAGG...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CAA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATCCTCTGGAATTAACGTaGAAGGAGCTTGCATGTTCT | + |
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Preference number: 3 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHPLELT*KELACS Trigger: AGAACATGCAAGCTCCTTCAACGTTAATTCCAGAGG...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGTGTGTTCCCATCTGACGAGGCAATGCCACTCAGAAGATGTCAGCACAGAGCCTCTGGAATTAACGTaGAAGGAGCTTGCATGTTCT | + |
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Preference number: 3 (lower is better) Translates to: QVCSHLTRQCHSEDVSTEPLELT*KELACS Trigger: AGAACATGCAAGCTCCTTCAACGTTAATTCCAGAGG...CTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
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| 3UTR-3UTR CAA 90 bp | TCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCAGTATTCACTACTTGGTaGAACAAGCCAAGGTTGCCT | + |
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Preference number: 3 (lower is better) Translates to: SWQVYTVAPAQCFLAVSPVFTTW*NKPRLP Trigger: AGGCAACCTTGGCTTGTTCAACCAAGTAGTGAATAC...TGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR TCA 72 bp | TGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATCTaGAATAGTTTAATGTCCCTCCTCCCAGCTTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: CPSPVLSCCLSI*NSLMSLLPALS Trigger: TGACAAAGCTGGGAGGAGGGACATTAAACTATTTCAGATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR GCA 72 bp | CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATaGTGGATGGAGCCTGGAGTGACGAGAACGTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: PPPSFVRVEVTK*WMEPGVTRTFY Trigger: ATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR CCA 72 bp | CCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTaGATGGAGCCTGGAGTGACGAGAACGTTTTATATC | + |
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Preference number: 3 (lower is better) Translates to: PPSFVRVEVTKC*MEPGVTRTFYI Trigger: GATATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
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| 3UTR CCA 72 bp | ACACTGGAGGATTTTGGTCTGCAGATCTGCACAGACTaGATGATATTCATACCGCTTGAACTTGGCTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: TLEDFGLQICTD*MIFIPLELGFH Trigger: GTGGAAGCCAAGTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124436.8 |
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| 3UTR-3UTR CAA 90 bp | GAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTTGATCCAGCAAGATATCCAAATTaGGATCTGCCCATCATTTTA | + |
|
Preference number: 3 (lower is better) Translates to: ELAVKRTEKAMGRGHFDPARYPN*DLPIIL Trigger: TAAAATGATGGGCAGATCCAAATTTGGATATCTTGC...TGGATCAAAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| 3UTR CCA 72 bp | CAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATaGCTGTCCCTTGCCCACCCAAAACCACTTCCAAAT | + |
|
Preference number: 3 (lower is better) Translates to: QSFTNVLVKQIT*LSLAHPKPLPN Trigger: ATTTGGAAGTGGTTTTGGGTGGGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| 3UTR TCA 72 bp | CTGATCGCTGATCTAGAACATGGCTTTTTAAACTGTTaGTCAAAACACGTTATGATTCAGTTGAGTCCATTT | + |
|
Preference number: 3 (lower is better) Translates to: LIADLEHGFLNC*SKHVMIQLSPF Trigger: AAATGGACTCAACTGAATCATAACGTGTTTTGATCAACAGTTTAAAAAGCCATGTTCTAGATCAGCGATCAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
||
| 3UTR TCA 72 bp | ATCCAAATTTGGATCTGCCCATCATTTTACTACAAGTaGTTGATTCCCATGTTTCAGTTAATAGAGGTAGCA | + |
|
Preference number: 3 (lower is better) Translates to: IQIWICPSFYYK*LIPMFQLIEVA Trigger: TGCTACCTCTATTAACTGAAACATGGGAATCAATCACTTGTAGTAAAATGATGGGCAGATCCAAATTTGGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR TCA 90 bp | GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCCCAGAGCAGAGCAGCTaGGAGTCTGCTGGGTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VLASLHCCPSPVLSCCLSPEQSS*ESAGCS Trigger: AGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGG...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| 3UTR CAA 72 bp | ACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTaGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TPRLHSLGKSTL*PQPSAFLLSLH Trigger: ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
||
| CDS-3UTR TCA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCGCGTCTCTGGTGTTCTaGCTCCTTTTTGGCTTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: MRRAHPGSTVLASLHCCPASLVF*LLFGLL Trigger: GAGCAAGCCAAAAAGGAGTCAGAACACCAGAGACGC...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
||
| CDS-3UTR GCA 90 bp | CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATCTTTCTCTTCCAGCTaGCGAGCCAGATGCTTCGCC | + |
|
Preference number: 4 (lower is better) Translates to: PPPSFVRVEVTKCWMEPGSFSSS*RARCFA Trigger: GGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGA...TCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR TCA 90 bp | TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLLPALSEWKSLNAGWSLDTPRW*LCRTLS Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR TCA 90 bp | AGGAACATCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATGCCACTCAGAGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: RNIRSPGVFPSDEAMPLRDTPRW*LCRTLS Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...TCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR TCA 90 bp | TGCCACTCAGAAGATGTCAGCACAGAGACCTCTGGAATTAACGTTGAAGGAGCTCCAGAGCAGAGCAGCTaGGAGTCTGCTGGGTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: CHSEDVSTETSGINVEGAPEQSS*ESAGCS Trigger: AGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGG...AGCTCCTTCAACGTTAATTCCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR GCA 90 bp | CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGAGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: PPPSFVRVEVTKCWMEPGDASPS*APLHWI Trigger: TATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATC...TCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR GCA 90 bp | GAACTGGCGGTAAAGAGAACAGAGAAGGCTATGGGTCGTGGACACTTTGATCCATCTTTCTCTTCCAGCTaGCGAGCCAGATGCTTCGCC | + |
|
Preference number: 4 (lower is better) Translates to: ELAVKRTEKAMGRGHFDPSFSSS*RARCFA Trigger: GGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGA...TGGATCAAAGTGTCCACGACCCATAGCCTTCTCTGTTCTCTTTACCGCCAGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR GCA 90 bp | GTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCCTGCTCTTTGTAGAATaGATCCTGCTTCCGCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: VLASLHCCPSPVLSCCLSLLFVE*ILLPHH Trigger: GTGATGCGGAAGCAGGATGCATTCTACAAAGAGCAG...GGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CCA 90 bp | CACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTTGGTCAGCTGCTCATTaGCTGCAGCCCTTTCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: HSLGKSTLLPQPSAFLLSWSAAH*LQPFLF Trigger: AAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCA...AGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CCA 90 bp | CACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTACACAGTGCATGTATTaGCTAGCCAGAGCAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: HSLGKSTLLPQPSAFLLSTQCMY*LARAEQ Trigger: CTGCTCTGCTCTGGCTAGCCAATACATGCACTGTGT...AGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CCA 90 bp | TTCCCATCTGACGAGGCAATGCCACTCAGAAGATGTCAGCACAGAGACCTCTGGACACAGTGCATGTATTaGCTAGCCAGAGCAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: FPSDEAMPLRRCQHRDLWTQCMY*LARAEQ Trigger: CTGCTCTGCTCTGGCTAGCCAATACATGCACTGTGT...CCAGAGGTCTCTGTGCTGACATCTTCTGAGTGGCATTGCCTCGTCAGATGGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR TCA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCGATATTCATACCGCTTaGACTTGGCTTCCACCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: MRRAHPGSTVLASLHCCPDIHTA*TWLPPL Trigger: AAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATC...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR TCA 90 bp | CAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTTCTGTTTGGCATGGTTaGCACAGTGCATGTATTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QSWQVYTVAPAQCFLAVSSVWHG*HSACIG Trigger: GCCAATACATGCACTGTGTCAACCATGCCAAACAGA...AGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR TCA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATTCTGCACAGACTGGATaGTATTCATACCGCTTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHSAQTG*YSYRLN Trigger: GTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGA...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CCA 90 bp | CCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGATGCTTAAGGCGTCTCTaGTGTTCTGACTCCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: PPPSFVRVEVTKCWMEPGCLRRL*CSDSFL Trigger: CAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCA...TCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR TCA 90 bp | CTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTCCATATCTTCATCAGAAACTaGAGCACCATAAACGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LGKSTLLPQPSAFLLSLHIFIRN*STINAG Trigger: TCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGAT...ATGGAGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
||
| CDS-3UTR TCA 90 bp | CAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCTCTATCTTCATCAGAAACTaGAGCACCATAAACGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QSWQVYTVAPAQCFLAVSIFIRN*STINAG Trigger: TCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGAT...AGAGACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066379.11 ENSMUST00000124436.8 |
||
| CDS-3UTR CCA 90 bp | TCCCTCCTCCCAGCTTTGTCAGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGCAGATCTGCACAGACTaGATGATATTCATACCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SLLPALSEWKSLNAGWSLQICTD*MIFIPL Trigger: AAGCGGTATGAATATCATCCAGTCTGTGCAGATCTG...CAGGCTCCATCCAGCATTTAGTGACTTCCACTCTGACAAAGCTGGGAGGAGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR TCA 90 bp | TGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGGGATATTCATACCGCTTaGACTTGGCTTCCACCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: CSVIMEGGSPLPLRRNIRDIHTA*TWLPPL Trigger: AAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATC...CCTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR TCA 90 bp | TGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGGTCTGCACAGACTGGATaGTATTCATACCGCTTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: CSVIMEGGSPLPLRRNIRSAQTG*YSYRLN Trigger: GTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGA...CCTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR TCA 90 bp | TTGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTCAGAAGGAACATCAGTCTGTTTGGCATGGTTaGCACAGTGCATGTATTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LLSNYGRRVSTATQKEHQSVWHG*HSACIG Trigger: GCCAATACATGCACTGTGTCAACCATGCCAAACAGA...CTGATGTTCCTTCTGAGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR CCA 90 bp | ATGGCAATCACTGGGTTGCTCAGTAATTATGGAAGGAGGGTCTCCACTGCCACTAACACTGGAGGATTTTaGTCTGCAGATCTGCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: MAITGLLSNYGRRVSTATNTGGF*SADLHR Trigger: TCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGTT...AGTGGCAGTGGAGACCCTCCTTCCATAATTACTGAGCAACCCAGTGATTGCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS-3UTR CCA 90 bp | AGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGAGTGACGAGAACGTTTTATAACACTGGAGGATTTTaGTCTGCAGATCTGCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: RVEVTKCWMEPGVTRTFYNTGGF*SADLHR Trigger: TCTGTGCAGATCTGCAGACCAAAATCCTCCAGTGTT...ATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR GCA 90 bp | CAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGCTGTCCCTTGCCGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: QQSFTNVLVKQITWLSLADASPS*APLHWI Trigger: TATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATC...GGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR TCA 90 bp | AATATCATCTTACCTAATATGAGAACTGGCGGTAAAGAGAACAGAGAAGGCTATGCGTCTCTGGTGTTCTaGCTCCTTTTTGGCTTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: NIILPNMRTGGKENREGYASLVF*LLFGLL Trigger: GAGCAAGCCAAAAAGGAGTCAGAACACCAGAGACGC...ATAGCCTTCTCTGTTCTCTTTACCGCCAGTTCTCATATTAGGTAAGATGATATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR TCA 90 bp | TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGGATACTCCTCGGTGGTaGCTTTGTAGAACTCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: WIEQQQSFTNVLVKQITWDTPRW*LCRTLS Trigger: GCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR CCA 90 bp | TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGTGGTCAGCTGCTCATTaGCTGCAGCCCTTTCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: WIEQQQSFTNVLVKQITWWSAAH*LQPFLF Trigger: AAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCA...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR TCA 90 bp | CAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGCTGTCCCTTGCCATCTTCATCAGAAACTaGAGCACCATAAACGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QQSFTNVLVKQITWLSLAIFIRN*STINAG Trigger: TCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGAT...GGCAAGGGACAGCCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR CCA 90 bp | TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGTGCTTAAGGCGTCTCTaGTGTTCTGACTCCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: WIEQQQSFTNVLVKQITWCLRRL*CSDSFL Trigger: CAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCA...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS-3UTR CAA 90 bp | CCACAGTCTTGGCAAGTCTACACTGTTGCCCCAGCCCAGTGCTTTCTTGCTGTCCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: PQSWQVYTVAPAQCFLAVLVSCS*AAALSL Trigger: AAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAG...GACAGCAAGAAAGCACTGGGCTGGGGCAACAGTGTAGACTTGCCAAGACTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CAA 90 bp | ATGAGAAGAGCACACCCAGGCTCCACAGTCTTGGCAAGTCTACACTGTTGCCCCTCCAGCATGCTCTGTTaGGCATGGTTGACACAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: MRRAHPGSTVLASLHCCPSSMLC*AWLTQC Trigger: GCACTGTGTCAACCATGCCAAACAGAGCATGCTGGA...GGGGCAACAGTGTAGACTTGCCAAGACTGTGGAGCCTGGGTGTGCTCTTCTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CAA 90 bp | AGGAACATCAGGTCTCCAGGTGTGTTCCCATCTGACGAGGCAATGCCACTCAGAGACACAGTGCATGTATaGGCTAGCCAGAGCAGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: RNIRSPGVFPSDEAMPLRDTVHV*ASQSRA Trigger: TGCTCTGCTCTGGCTAGCCAATACATGCACTGTGTC...TCTGAGTGGCATTGCCTCGTCAGATGGGAACACACCTGGAGACCTGATGTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129069.8 |
||
| CDS GCA 90 bp | CCAGCTGCCGAGCTTTGTCTTCAATATCCAGATGCTTCGCCTTCATaGGCTCCTCTTCACTGGATATTCTTTCCCGAAGGACAGCTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PAAELCLQYPDASPS*APLHWIFFPEGQLW Trigger: CCAGAGCTGTCCTTCGGGAAAGAATATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATCTGGATATTGAAGACAAAGCTCGGCAGCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127666.8 |
||
| CDS-3UTR CAA 90 bp | AGAGTGGAAGTCACTAAATGCTGGATGGAGCCTGGAGTGACGAGAACGTTTTATGACACAGTGCATGTATaGGCTAGCCAGAGCAGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: RVEVTKCWMEPGVTRTFYDTVHV*ASQSRA Trigger: TGCTCTGCTCTGGCTAGCCAATACATGCACTGTGTC...ATAAAACGTTCTCGTCACTCCAGGCTCCATCCAGCATTTAGTGACTTCCACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066379.11 |
||
| CDS-3UTR CAA 90 bp | TGGATTGAGCAGCAACAATCTTTCACAAATGTTCTTGTAAAGCAGATAACATGGCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: WIEQQQSFTNVLVKQITWLVSCS*AAALSL Trigger: AAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAG...CCATGTTATCTGCTTTACAAGAACATTTGTGAAAGATTGTTGCTGCTCAATCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115091.2 |
||
| CDS GCA 72 bp | CTGGATATTCTTTCCCGAAGGACAGCTCTGGTCAGCTaGTCATTGGCTGCAGCCCTTTCTCTTTCTAGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: LDILSRRTALVS*SLAAALSLSRS Trigger: GGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAATATCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066379.11 ENSMUST00000115091.2 ENSMUST00000127666.8 |
||
| CDS CCA 72 bp | TTCTTTCCCGAAGGACAGCTCTGGTCAGCTGCTCATTaGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: FFPEGQLWSAAH*LQPFLFLGPLL Trigger: AAGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066379.11 ENSMUST00000115091.2 ENSMUST00000127666.8 |
||
| CDS CAA 72 bp | ATTCTTTCCCGAAGGACAGCTCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: ILSRRTALVSCS*AAALSLSRSLA Trigger: AGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066379.11 ENSMUST00000115091.2 ENSMUST00000127666.8 |
||
| CDS CAA 90 bp | TCACTGGATATTCTTTCCCGAAGGACAGCTCTGGTCAGCTGCTCATaGGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCTTGCTTAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SLDILSRRTALVSCS*AAALSLSRSLACLR Trigger: CCTTAAGCAAGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAATATCCAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066379.11 ENSMUST00000115091.2 ENSMUST00000127666.8 |
||
| CDS GCA 72 bp | TTGGCTGCAGCCCTTTCTCTTTCTAGGTCCCTTGCTTaGTTAAGGCGTCTCTGGTGTTCTGACTCCTTTTTG | + |
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Preference number: 6 (lower is better) Translates to: LAAALSLSRSLA*LRRLWCSDSFL Trigger: CAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCAAGCAAGGGACCTAGAAAGAGAAAGGGCTGCAGCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066379.11 ENSMUST00000115091.2 ENSMUST00000127666.8 |
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| CDS GCA 72 bp | TCTTCCAGCTGCCGAGCTTTGTCTTCAATATCCAGATaGTTCGCCTTCATGCGCTCCTCTTCACTGGATATT | + |
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Preference number: 6 (lower is better) Translates to: SSSCRALSSISR*FAFMRSSSLDI Trigger: AATATCCAGTGAAGAGGAGCGCATGAAGGCGAAGCATCTGGATATTGAAGACAAAGCTCGGCAGCTGGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127666.8 |
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