Pregenerated sensors for CHCHD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070493Ensembl transcript IDs: ENSMUST00000094280.4
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTCACAATCACAACACAGTCCAAGGAGGCCAAACACTTCCCCAGTAACCAACACCCCCCAGTGATGGCGTaGCCCAGGGTGTGTCCCACT | + |
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Preference number: 4 (lower is better) Translates to: LTITTQSKEAKHFPSNQHPPVMA*PRVCPT Trigger: AGTGGGACACACCCTGGGTCACGCCATCACTGGGGG...GTGTTGGTTACTGGGGAAGTGTTTGGCCTCCTTGGACTGTGTTGTGATTGTGAG 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094280.4 |
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| CDS-3UTR CCA 90 bp | CTCACAATCACAACACAGTCCAAGGAGGCCAAACACTTCCCCAGTAACCAACACGGTCCAAAAGACTGCTaGTTCTGCAGCTGGGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LTITTQSKEAKHFPSNQHGPKDC*FCSWAP Trigger: GGGAGCCCAGCTGCAGAACCAGCAGTCTTTTGGACC...GTGTTGGTTACTGGGGAAGTGTTTGGCCTCCTTGGACTGTGTTGTGATTGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094280.4 |
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| CDS-3UTR TCA 90 bp | GCATCCACAGTTAGATCTCTTTCACGGCCATTCCAAAGCAATGAACTGTTAGAAGCTGCTGCTGGAGGCTaGGCTGCAGGTGCTCTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: ASTVRSLSRPFQSNELLEAAAGG*AAGALR Trigger: CCGAAGAGCACCTGCAGCTCAGCCTCCAGCAGCAGC...TTCTAACAGTTCATTGCTTTGGAATGGCCGTGAAAGAGATCTAACTGTGGATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094280.4 |
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| CDS-3UTR CCA 90 bp | GCATCCACAGTTAGATCTCTTTCACGGCCATTCCAAAGCAATGAACTGTTAGAAGCGGTGGTAGCCATCTaGGCCATCAGGCCTGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ASTVRSLSRPFQSNELLEAVVAI*AIRPGC Trigger: GCAGCCAGGCCTGATGGCCCAGATGGCTACCACCGC...TTCTAACAGTTCATTGCTTTGGAATGGCCGTGAAAGAGATCTAACTGTGGATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094280.4 |
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