Pregenerated sensors for CHCHD10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049422

Ensembl transcript IDs: ENSMUST00000058906.7, ENSMUST00000219839.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	TCTCCTGTTAGTCTGCGGGGTGAGAACGATCCTTCCTTACTCCCAGTCACATGGTGCTGGACGGCAGGCTaGGCAGGCTCTGAATTTCCC	+
Preference number: 4 (lower is better) Translates to: SPVSLRGENDPSLLPVTWCWTAG*AGSEFP Trigger: GGGAAATTCAGAGCCTGCCCAGCCTGCCGTCCAGCA...CCATGTGACTGGGAGTAAGGAAGGATCGTTCTCACCCCGCAGACTAACAGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058906.7 ENSMUST00000219839.2
CDS-3UTR TCA 90 bp	AGTCTGCGGGGTGAGAACGATCCTTCCTTACTCCCAGTCACATGGAACCTCTCCAGTCCAGGAACTGCTTaGTCTCATAGGAGCAGGGCC	+
Preference number: 4 (lower is better) Translates to: SLRGENDPSLLPVTWNLSSPGTA*SHRSRA Trigger: GGCCCTGCTCCTATGAGATCAAGCAGTTCCTGGACT...GGAGAGGTTCCATGTGACTGGGAGTAAGGAAGGATCGTTCTCACCCCGCAGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058906.7 ENSMUST00000219839.2
CDS-3UTR TCA 90 bp	TCTCCTGTTAGTCTGCGGGGTGAGAACGATCCTTCCTTACTCCCAGTCACATGGAGTCCAGGAACTGCTTaGTCTCATAGGAGCAGGGCC	+
Preference number: 4 (lower is better) Translates to: SPVSLRGENDPSLLPVTWSPGTA*SHRSRA Trigger: GGCCCTGCTCCTATGAGATCAAGCAGTTCCTGGACT...CCATGTGACTGGGAGTAAGGAAGGATCGTTCTCACCCCGCAGACTAACAGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058906.7 ENSMUST00000219839.2
CDS-3UTR TCA 90 bp	GAGAACGATCCTTCCTTACTCCCAGTCACATGGAACCTCTCCTTTCCATCAAGCAGGGTTAGGTCGCTCTaGGTGGTGGAGCAGTCCAGG	+
Preference number: 4 (lower is better) Translates to: ENDPSLLPVTWNLSFPSSRVRSL*VVEQSR Trigger: CCTGGACTGCTCCACCACTCAGAGCGACCTAACCCT...GCTTGATGGAAAGGAGAGGTTCCATGTGACTGGGAGTAAGGAAGGATCGTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058906.7 ENSMUST00000219839.2
CDS-3UTR CCA 90 bp	GGTGAGAACGATCCTTCCTTACTCCCAGTCACATGGAACCTCTCCTTTCCATCATGCTGGACGGCAGGCTaGGCAGGCTCTGAATTTCCC	+
Preference number: 4 (lower is better) Translates to: GENDPSLLPVTWNLSFPSCWTAG*AGSEFP Trigger: GGGAAATTCAGAGCCTGCCCAGCCTGCCGTCCAGCA...TGATGGAAAGGAGAGGTTCCATGTGACTGGGAGTAAGGAAGGATCGTTCTCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058906.7 ENSMUST00000219839.2
CDS-3UTR TCA 90 bp	GTGAGAACGATCCTTCCTTACTCCCAGTCACATGGAACCTCTCCTTTCCATCAAAGGGTTAGGTCGCTCTaGGTGGTGGAGCAGTCCAGG	+
Preference number: 4 (lower is better) Translates to: VRTILPYSQSHGTSPFHQRVRSL*VVEQSR Trigger: CCTGGACTGCTCCACCACTCAGAGCGACCTAACCCT...TTGATGGAAAGGAGAGGTTCCATGTGACTGGGAGTAAGGAAGGATCGTTCTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058906.7 ENSMUST00000219839.2

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